Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 242 of 378
Found at i:71901050 original size:28 final size:28
Alignment explanation
Indices: 71901010--71901138 Score: 170
Period size: 28 Copynumber: 4.6 Consensus size: 28
71901000 ATTGCATGAC
71901010 TATGAATGTGATTGGGGCCGATGGACAA
1 TATGAATGTGATTGGGGCCGATGGACAA
71901038 TATGAATGTGATTGGGGCCGATGGACAA
1 TATGAATGTGATTGGGGCCGATGGACAA
* * *
71901066 TATGAATATGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCGATGGACAA
* * *
71901094 TATGAATGTGATTTGGGCCTAATAGG-CCA
1 TATGAATGTGATTGGGGCC-GAT-GGACAA
*
71901123 TATGAATGAGATTGGG
1 TATGAATGTGATTGGG
71901139 CCTAGTGGGC
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 70 0.77
29 19 0.21
30 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCCGATGGACAA
Found at i:71901139 original size:28 final size:29
Alignment explanation
Indices: 71901089--71901154 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
71901079 GGGGCCGATG
*
71901089 GGCCATATGAATGTGATTTGGGCCTAATA
1 GGCCATATGAATGAGATTTGGGCCTAATA
* *
71901118 GGCCATATGAATGAGA-TTGGGCCTAGTG
1 GGCCATATGAATGAGATTTGGGCCTAATA
71901146 GGCCATATG
1 GGCCATATG
71901155 CATGTATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 19 0.56
29 15 0.44
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
GGCCATATGAATGAGATTTGGGCCTAATA
Found at i:71901140 original size:56 final size:56
Alignment explanation
Indices: 71901010--71901159 Score: 171
Period size: 56 Copynumber: 2.7 Consensus size: 56
71901000 ATTGCATGAC
* * * *
71901010 TATGAATGTGATTGGGGCCGATGGACAATATGAATGTGATTGGGGCCGATGGACAA
1 TATGAATGAGATTGGGGCCGATGGGCCATATGAATGTGATTGGGGCCAATGGACAA
* *
71901066 TATGAAT-ATGATTGGGGCCGATGGGCCATATGAATGTGATTTGGGCCTAATAGG-CCA
1 TATGAATGA-GATTGGGGCCGATGGGCCATATGAATGTGATTGGGGCC-AAT-GGACAA
* *
71901123 TATGAATGAGATT-GGGCCTAGTGGGCCATATGCATGT
1 TATGAATGAGATTGGGGCCGA-TGGGCCATATGAATGT
71901160 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
56 48 0.59
57 30 0.37
58 3 0.04
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (56 bp):
TATGAATGAGATTGGGGCCGATGGGCCATATGAATGTGATTGGGGCCAATGGACAA
Found at i:71906289 original size:68 final size:67
Alignment explanation
Indices: 71906217--71906366 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
71906207 CATCATGTGT
* * * *
71906217 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
71906279 ATGTAG
62 ATGTAG
** * *
71906285 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
71906350 AG
66 AG
71906352 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
71906367 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:71906322 original size:64 final size:64
Alignment explanation
Indices: 71906241--71906424 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
71906231 AGACATTATG
* *
71906241 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71906305 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71906370 AA
63 AA
* * * *
71906372 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71906425 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71907512 original size:2 final size:2
Alignment explanation
Indices: 71907505--71907529 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
71907495 TCATGACATG
71907505 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
71907530 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71910724 original size:68 final size:67
Alignment explanation
Indices: 71910652--71910801 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
71910642 CATCATGTGT
* * * *
71910652 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
71910714 ATGTAG
62 ATGTAG
** * *
71910720 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
71910785 AG
66 AG
71910787 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
71910802 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:71910757 original size:64 final size:64
Alignment explanation
Indices: 71910676--71910859 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
71910666 AGACATTATG
* *
71910676 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71910740 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71910805 AA
63 AA
* * * *
71910807 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71910860 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71917927 original size:39 final size:39
Alignment explanation
Indices: 71917873--71918004 Score: 176
Period size: 39 Copynumber: 3.4 Consensus size: 39
71917863 ATGTAAAGAT
* *
71917873 TGAAAATATATCCGGACATGAGGTCTGCAGGCTACATGC
1 TGAAAAAATATCCGGACATGAGGTCCGCAGGCTACATGC
* *
71917912 TGAAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TGAAAAAATATCCGGACATGAGGTCCGCAGGCTACATGC
* * *
71917951 T-AGAAATATATCCGGACTTGAGGTCCGCAGGCTACTTGC
1 TGA-AAAAATATCCGGACATGAGGTCCGCAGGCTACATGC
*
71917990 TGGAAAAATATCCGG
1 TGAAAAAATATCCGG
71918005 GTTAAAGACC
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 79 0.99
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (39 bp):
TGAAAAAATATCCGGACATGAGGTCCGCAGGCTACATGC
Found at i:71918018 original size:78 final size:77
Alignment explanation
Indices: 71917876--71918030 Score: 213
Period size: 78 Copynumber: 2.0 Consensus size: 77
71917866 TAAAGATTGA
* * *
71917876 AAATATATCCGGACATGAGGTCTGCAGGCTACATGCTGAAAAAATATCCGGACATGAGATCCGCA
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACATAAGACCCGCA
71917941 GGCTATATGCTAG
66 GGCT-TATGCTAG
* * * **
71917954 AAATATATCCGGACTTGAGGTCCGCAGGCTACTTGCTGGAAAAATATCCGG-GTTAAAGACCCGC
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACAT-AAGACCCGC
71918018 AGGCTTATGCTAG
65 AGGCTTATGCTAG
71918031 TAATGTATTC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 9 0.13
78 59 0.87
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (77 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACATAAGACCCGCA
GGCTTATGCTAG
Found at i:71926384 original size:72 final size:72
Alignment explanation
Indices: 71926262--71926418 Score: 233
Period size: 72 Copynumber: 2.2 Consensus size: 72
71926252 ACGGACTGGG
* * * *
71926262 ACACGGCCGTGTGTCATTAGTTCAAAGGTTACACAGCTTGAGACATGGGTGTATGTCTCAGCCAT
1 ACACGGCCGTGTGTCACTAGTTCAAAGGTTACACAGCCTGAGACACGGGTGTATGTCTAAGCCAT
71926327 GTGAGGC
66 GTGAGGC
* * *
71926334 ACACGGCCGTGTGTCCCTAGTTCGAAGGTTACACAGCCTGAGACACGGGTGTGTGTCTAAGCCAT
1 ACACGGCCGTGTGTCACTAGTTCAAAGGTTACACAGCCTGAGACACGGGTGTATGTCTAAGCCAT
71926399 GTGAGGC
66 GTGAGGC
* *
71926406 ATACAGCCGTGTG
1 ACACGGCCGTGTG
71926419 ACCTCTATAG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.24
Consensus pattern (72 bp):
ACACGGCCGTGTGTCACTAGTTCAAAGGTTACACAGCCTGAGACACGGGTGTATGTCTAAGCCAT
GTGAGGC
Found at i:71927660 original size:17 final size:17
Alignment explanation
Indices: 71927628--71927661 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71927618 TATAAACATG
*
71927628 TTTAACCATGTATTCAA
1 TTTAACCAAGTATTCAA
*
71927645 TTTAACCAAGTGTTCAA
1 TTTAACCAAGTATTCAA
71927662 CTAACTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (17 bp):
TTTAACCAAGTATTCAA
Found at i:71928580 original size:25 final size:25
Alignment explanation
Indices: 71928552--71928618 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
71928542 GAATCGATAT
* **
71928552 GCTCTCATGAGCAAAAAATTGGTAA
1 GCTCTCATGAGCTAAAAACCGGTAA
* *
71928577 GCTCAT-ACGAGCTAAGAACCGGTAA
1 GCTC-TCATGAGCTAAAAACCGGTAA
71928602 GCTCTCATGAGCTAAAA
1 GCTCTCATGAGCTAAAA
71928619 TCGGTAAACT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
24 1 0.03
25 31 0.94
26 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (25 bp):
GCTCTCATGAGCTAAAAACCGGTAA
Found at i:71928635 original size:24 final size:24
Alignment explanation
Indices: 71928566--71928638 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
71928556 TCATGAGCAA
* *
71928566 AAAATTGGTAAGCTCATACGAGCT
1 AAAATCGGTAAGCTCATATGAGCT
*
71928590 AAGAACCGGTAAGCTC-TCATGAGCT
1 AA-AATCGGTAAGCTCAT-ATGAGCT
*
71928615 AAAATCGGTAAACTCATATGAGCT
1 AAAATCGGTAAGCTCATATGAGCT
71928639 GTGGTGTGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (24 bp):
AAAATCGGTAAGCTCATATGAGCT
Found at i:71928638 original size:49 final size:50
Alignment explanation
Indices: 71928528--71928638 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
71928518 TACATGTATG
* * * * *
71928528 CTCATACGAGCTATGAATCGATATGCTCTCATGAGCAAAAAATTGGTAAG
1 CTCATACGAGCTAAGAACCGATAAGCTCTCATGAGCAAAAAATCGGTAAA
* *
71928578 CTCATACGAGCTAAGAACCGGTAAGCTCTCATGAGC-TAAAATCGGTAAA
1 CTCATACGAGCTAAGAACCGATAAGCTCTCATGAGCAAAAAATCGGTAAA
*
71928627 CTCATATGAGCT
1 CTCATACGAGCT
71928639 GTGGTGTGTC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
49 21 0.40
50 32 0.60
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (50 bp):
CTCATACGAGCTAAGAACCGATAAGCTCTCATGAGCAAAAAATCGGTAAA
Found at i:71929512 original size:16 final size:18
Alignment explanation
Indices: 71929481--71929513 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71929471 TTGTTTTATT
71929481 TATTTTATCATTAATTAC
1 TATTTTATCATTAATTAC
71929499 TATTTTA-C-TTAATTA
1 TATTTTATCATTAATTA
71929514 ACCTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTTATCATTAATTAC
Found at i:71937490 original size:16 final size:16
Alignment explanation
Indices: 71937469--71937505 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
71937459 CGGAAAATCC
**
71937469 CGAAATGCTGAAAAGT
1 CGAAATGCCAAAAAGT
71937485 CGAAATGCCAAAAAGT
1 CGAAATGCCAAAAAGT
71937501 CGAAA
1 CGAAA
71937506 GTTCGGCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.22, T:0.14
Consensus pattern (16 bp):
CGAAATGCCAAAAAGT
Found at i:71937798 original size:28 final size:29
Alignment explanation
Indices: 71937731--71937805 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
71937721 AAGTGGTTTA
* *
71937731 GGCCTAATGGGCCATACGAATGTGATTTG
1 GGCCTAATGGGCCATATGAATGAGATTTG
71937760 GGCCTAATGGGCCATATGAATGAGA-TTG
1 GGCCTAATGGGCCATATGAATGAGATTTG
*
71937788 GGCCTAGTGGGCCATATG
1 GGCCTAATGGGCCATATG
71937806 CATGTATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
28 20 0.47
29 23 0.53
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATGAGATTTG
Found at i:71939450 original size:19 final size:19
Alignment explanation
Indices: 71939412--71939451 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
71939402 CTAAGTTAAA
*
71939412 TAAAACTAACCAAACTAAT
1 TAAAACTAACCAAACCAAT
71939431 TAAAA-TAACCAAACCCAAT
1 TAAAACTAACCAAA-CCAAT
71939450 TA
1 TA
71939452 CACCAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (19 bp):
TAAAACTAACCAAACCAAT
Found at i:71945728 original size:27 final size:27
Alignment explanation
Indices: 71945706--71945830 Score: 189
Period size: 27 Copynumber: 4.6 Consensus size: 27
71945696 TTAGTTTACC
71945706 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
71945733 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
71945760 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
71945787 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
71945814 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
71945831 TCGACCTGTA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 1 0.01
27 92 0.99
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:71945844 original size:27 final size:27
Alignment explanation
Indices: 71945706--71945885 Score: 134
Period size: 27 Copynumber: 6.7 Consensus size: 27
71945696 TTAGTTTACC
* * *
71945706 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTCGA-CTTGTA
* **
71945733 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCGAAATACCCTC-GACTTGTA
* **
71945760 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCGAAATACCCTC-GACTTGTA
* * *
71945787 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GACTTGTA
* *
71945814 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGACTTGTA
** *
71945841 AAATTATTGAAATACTCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACTTGTA
*
71945868 AAATTACCGAAGTACCCT
1 AAATTACCGAAATACCCT
71945886 TGATTTATAG
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGACTTGTA
Found at i:71945854 original size:81 final size:81
Alignment explanation
Indices: 71945706--71945903 Score: 195
Period size: 81 Copynumber: 2.4 Consensus size: 81
71945696 TTAGTTTACC
***
71945706 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAA
**
71945770 AATACCC-CTGGTTTGTA
65 AATACCCTC-GACTTGTA
* ** ***
71945787 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-GACCTGTAAAATTACCAA
*
71945851 AATACTCTCGACTTGTA
65 AATACCCTCGACTTGTA
* * * * *
71945868 AAATTACCGAAGTACCCTTGATTTATAGAATTACCA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCA
71945904 TTTTACCCTC
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
80 4 0.04
81 88 0.94
82 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAA
ATACCCTCGACTTGTA
Found at i:71945855 original size:54 final size:54
Alignment explanation
Indices: 71945706--71945846 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
71945696 TTAGTTTACC
** *
71945706 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGA-CCTGTAAAATTACCAAAATACCCCTGATTTGTA
*** *
71945760 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAATACCCCTGATTTGTA
**
71945814 AAATTACTGAAATA-CCCTCGACCTGTAAAATTA
1 AAATTACCAAAATACCCCT-GACCTGTAAAATTA
71945847 TTGAAATACT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 4 0.05
54 73 0.95
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:71945953 original size:27 final size:27
Alignment explanation
Indices: 71945923--71945992 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
71945913 CGATTTACAA
* * *
71945923 AATTATTGAACTACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
71945950 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71945977 AATTACCGAGATACCC
1 AATTACTGAAATACCC
71945993 TTATGGGTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:71946883 original size:25 final size:25
Alignment explanation
Indices: 71946855--71946910 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
71946845 CATTCACATT
* * * *
71946855 CTGATTCTAATTTTGTTACCTGATA
1 CTGATTCTAACTCTGTCACCTAATA
*
71946880 CTGATTCTGACTCTGTCACCTAATA
1 CTGATTCTAACTCTGTCACCTAATA
71946905 CTGATT
1 CTGATT
71946911 TTGATTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.43
Consensus pattern (25 bp):
CTGATTCTAACTCTGTCACCTAATA
Found at i:71946924 original size:37 final size:37
Alignment explanation
Indices: 71946874--71946955 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
71946864 ATTTTGTTAC
* * *
71946874 CTGATACTGATTCTGACTCTGTCACCTAATACTGATT
1 CTGATTCTAATTCTAACTCTGTCACCTAATACTGATT
* * * *
71946911 TTGATTCTAATTCTAATTCTGTTACCTGATACTGATT
1 CTGATTCTAATTCTAACTCTGTCACCTAATACTGATT
71946948 CTGATTCT
1 CTGATTCT
71946956 GTCACCTGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (37 bp):
CTGATTCTAATTCTAACTCTGTCACCTAATACTGATT
Found at i:71946948 original size:25 final size:25
Alignment explanation
Indices: 71946920--71946980 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
71946910 TTTGATTCTA
* *
71946920 ATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
*
71946945 ATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGTCACCTGATACTG
71946970 ATTCTGATTCT
1 ATTCTGATTCT
71946981 CATTTTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTGATACTG
Found at i:71946953 original size:6 final size:6
Alignment explanation
Indices: 71946905--71946992 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
71946895 TCACCTAATA
* * * *
71946905 CTGATT TTGATT CTAATT CTAATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
71946954 CTG-TCAC CTGATT CTGATT CTGATT CTCATT TTGATT CT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CT
71946993 AGTTTTGATA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.05
6 53 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:71946992 original size:62 final size:62
Alignment explanation
Indices: 71946852--71946980 Score: 204
Period size: 62 Copynumber: 2.1 Consensus size: 62
71946842 TTGCATTCAC
* * *
71946852 ATTCTGATTCTAATTTTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTTTG
1 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
* * *
71946914 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
71946976 ATTCT
1 ATTCT
71946981 CATTTTGATT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (62 bp):
ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
Found at i:71949066 original size:27 final size:26
Alignment explanation
Indices: 71948968--71949146 Score: 151
Period size: 27 Copynumber: 6.7 Consensus size: 26
71948958 TTTAGTTTAC
* *
71948968 AAAATTACCAAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCT-GATTTGT
* *
71948995 AAAATTACCAAAATACCATGGTTTGT
1 AAAATTACCAAAATACCCTGATTTGT
*
71949021 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
* * *
71949048 GAAATTACCAAAATACCCCTAATTTTT
1 AAAATTACCAAAATA-CCCTGATTTGT
* ** * *
71949075 GAAATTACTGAAAGACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-GATTTGT
*** *
71949102 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-GATTTGT
*
71949129 AAAATTACCAAAGTACCC
1 AAAATTACCAAAATACCC
71949147 CCGATTTATA
Statistics
Matches: 128, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 23 0.18
27 105 0.82
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGT
Found at i:71949162 original size:81 final size:81
Alignment explanation
Indices: 71949044--71949201 Score: 183
Period size: 81 Copynumber: 2.0 Consensus size: 81
71949034 TACCCCTGGT
* * * **
71949044 TTGTGAAATTACCAAAATACCCCTAATTTTTGAAATTACTGAAAGACCCTCGACTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCCAATTTTAGAAATTACTGAAAGACCCTCGACTTACAAAATTA
71949109 TTGAAATACCCTCGAC
66 TTGAAATACCCTCGAC
* * **** * *
71949125 TTGTAAAATTACCAAAGTACCCCCGATTTATAG-AATTACTGTTTTACCTTCGATTTACAAAATT
1 TTGTAAAATTACCAAAATACCCCCAATTT-TAGAAATTACTGAAAGACCCTCGACTTACAAAATT
71949189 ATTGAAATACCCT
65 ATTGAAATACCCT
71949202 TGTAGGGTAG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 61 0.97
82 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCCAATTTTAGAAATTACTGAAAGACCCTCGACTTACAAAATTA
TTGAAATACCCTCGAC
Found at i:71949215 original size:27 final size:27
Alignment explanation
Indices: 71949185--71949307 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
71949175 CGATTTACAA
*
71949185 AATTATTGAAATACC-CTTGTAGGGTAG
1 AATTACTGAAATACCTC-TGTAGGGTAG
* *
71949212 AATTACTGGAATACCTCTGTTGGGTAG
1 AATTACTGAAATACCTCTGTAGGGTAG
*
71949239 AATTACTGAAATACC-CTTGTAAGGTAG
1 AATTACTGAAATACCTC-TGTAGGGTAG
* * *
71949266 AAATACCGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCTCTGTAGGGTAG
* *
71949293 AATTACCGATATACC
1 AATTACTGAAATACC
71949308 CTTTTGGGAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 78 0.96
28 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCTCTGTAGGGTAG
Found at i:71949243 original size:54 final size:54
Alignment explanation
Indices: 71949185--71949310 Score: 171
Period size: 54 Copynumber: 2.3 Consensus size: 54
71949175 CGATTTACAA
* * * * * * *
71949185 AATTATTGAAATACCCTTGTAGGGTAGAATTACTGGAATACCTCTGTTGGGTAG
1 AATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATACCTCTATAGGGTAG
71949239 AATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATACCTCTATAGGGTAG
* *
71949293 AATTACCGATATACCCTT
1 AATTACTGAAATACCCTT
71949311 TTGGGATAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATACCTCTATAGGGTAG
Found at i:71949892 original size:22 final size:22
Alignment explanation
Indices: 71949840--71949902 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
71949830 GCCAATTATT
*
71949840 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
71949862 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
* *
71949884 TTGATTATGGCTATGTGCC
1 CTGATTATGGCTTTGTGCC
71949903 GTTATTGTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:71950019 original size:27 final size:26
Alignment explanation
Indices: 71949989--71950069 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
71949979 ATTCTGTTAA
* *
71949989 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
71950016 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
71950043 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
71950069 G
1 G
71950070 CCATGCTACA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 6 0.12
27 43 0.88
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:71950225 original size:31 final size:30
Alignment explanation
Indices: 71950183--71950287 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 30
71950173 TTGCATTCAC
*
71950183 ATTCTGATTCTGATTCTATTACTTGATACTA
1 ATTCTGATTCTGATTCTATTAC-TGATACTG
* * * * *
71950214 ATTTTGATTCTG-TCACCTAATACTAATTCTG
1 ATTCTGATTCTGAT--TCTATTACTGATACTG
*
71950245 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATTA-CTGATACTG
71950276 ATTCTGATTCTG
1 ATTCTGATTCTG
71950288 TCACCTGATT
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
30 5 0.09
31 46 0.79
32 7 0.12
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTATTACTGATACTG
Found at i:71950248 original size:6 final size:6
Alignment explanation
Indices: 71950239--71950332 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
71950229 CCTAATACTA
*
71950239 ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * * *
71950288 -TCACCTG ATTTTG ATTTTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
71950333 AATTGTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71950270 original size:25 final size:25
Alignment explanation
Indices: 71950242--71950311 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
71950232 AATACTAATT
*
71950242 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
71950267 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
71950292 CTGATTTTGATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
71950312 CATTTTGATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:71951659 original size:27 final size:27
Alignment explanation
Indices: 71951601--71951662 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
71951591 ATATATATAC
* *
71951601 ATCACATAGGGGCAAAACAGTCATCTT
1 ATCATATAAGGGCAAAACAGTCATCTT
* *
71951628 ATCATATAAGGGCAAAATAGTCATTTT
1 ATCATATAAGGGCAAAACAGTCATCTT
71951655 ATCATATA
1 ATCATATA
71951663 TAGAGGGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (27 bp):
ATCATATAAGGGCAAAACAGTCATCTT
Found at i:71953311 original size:40 final size:39
Alignment explanation
Indices: 71953265--71953449 Score: 167
Period size: 40 Copynumber: 4.7 Consensus size: 39
71953255 CCACAGCATG
*
71953265 AATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATAGAAC-ACTAGCACA
* ** * *
71953305 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGTCTTAGCCCGGATAGAAC-ACTAGCACA
* **
71953345 AATGCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCAC-
1 AATGCCTTCGGGTCTTAGCCCGGAT-AGAACACTAGCACA
* * * * *
71953384 AATGGCCTTC-GGTCTTAACCCGGGTATAATTACTAGCATA
1 AAT-GCCTTCGGGTCTTAGCCCGGATAGAA-CACTAGCACA
* *
71953424 AATGTCTTCGGGACTTAGCCCGGATA
1 AATGCCTTCGGGTCTTAGCCCGGATA
71953450 TCATTCAATT
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
39 28 0.24
40 88 0.75
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATAGAACACTAGCACA
Found at i:71961334 original size:40 final size:39
Alignment explanation
Indices: 71961289--71961493 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
71961279 CGGAATACAA
*
71961289 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71961329 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71961369 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
71961409 CCGGATGT-GTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
71961447 CCGG-TATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71961486 CCGGATAT
1 CCGGATAT
71961494 CATTCAATTG
Statistics
Matches: 139, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
37 2 0.01
38 31 0.22
39 26 0.19
40 80 0.58
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71963966 original size:24 final size:24
Alignment explanation
Indices: 71963793--71963964 Score: 281
Period size: 24 Copynumber: 7.1 Consensus size: 24
71963783 GCAAAGACCA
*
71963793 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
71963817 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
71963841 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
71963865 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
71963889 TATGTGCACTATGTGTGCGATTTAC
1 TATG-GCACTATGTGTGCGATTTAC
*
71963914 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
71963938 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
71963962 TAT
1 TAT
71963965 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
24 118 0.84
25 22 0.16
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:71971893 original size:24 final size:24
Alignment explanation
Indices: 71971721--71971891 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
71971711 GCAAAGACCA
*
71971721 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
71971745 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
71971769 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
71971793 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
71971817 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
71971841 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
71971865 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
71971889 TAT
1 TAT
71971892 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:71974445 original size:51 final size:51
Alignment explanation
Indices: 71974369--71974520 Score: 232
Period size: 51 Copynumber: 3.0 Consensus size: 51
71974359 TACGTGCAGT
* *
71974369 AGCAACATTATCCAGTCCATTTGATGTTGCAAAATCACCAGCATATTCATC
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
* * * **
71974420 AGCAACATTATCAACTTCATCTGATGTTACAAAATCACCAAAATATTCATC
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
*
71974471 AGCAACATTATCCACTCCATCTGATGTTGTAAAATCACCAGCATATTCAT
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
71974521 TACCAGCAAC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (51 bp):
AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
Found at i:71975520 original size:117 final size:117
Alignment explanation
Indices: 71975348--71975558 Score: 318
Period size: 117 Copynumber: 1.8 Consensus size: 117
71975338 GGTACCAGAA
* * *
71975348 ATCAACATCATCGGGACCATAATCGCATCACAAATCGACAAAACAAACCCTACATTCTAGCACTG
1 ATCAACAACATCGGGACCATAATCGCATCAAAAATCGACAAAACAAACCCTACATTCTAGCACTC
*
71975413 AAATTGCAATAATAAATCACAATTAACCATCTACAATTTTTACAACAATTTT
66 AAATTGCAATAATAAATCACAAATAACCATCTACAATTTTTACAACAATTTT
* *
71975465 ATCAACAACATCGGGACCACT-ATCGCATCAAAAATCGA-AAAGACAAACCCTACATTGTCGCAC
1 ATCAACAACATCGGGACCA-TAATCGCATCAAAAATCGACAAA-ACAAACCCTACATTCTAGCAC
* *
71975528 TCAAATTGCAATACTAAATCGCAAATAACCA
64 TCAAATTGCAATAATAAATCACAAATAACCA
71975559 ACAAATCAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
116 3 0.04
117 80 0.95
118 1 0.01
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (117 bp):
ATCAACAACATCGGGACCATAATCGCATCAAAAATCGACAAAACAAACCCTACATTCTAGCACTC
AAATTGCAATAATAAATCACAAATAACCATCTACAATTTTTACAACAATTTT
Found at i:71975767 original size:16 final size:16
Alignment explanation
Indices: 71975746--71975780 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
71975736 AATGCTAACA
*
71975746 ATTTAGGTATTTAAAG
1 ATTTAGGGATTTAAAG
*
71975762 ATTTAGGGATTTGAAG
1 ATTTAGGGATTTAAAG
71975778 ATT
1 ATT
71975781 GTTAGAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (16 bp):
ATTTAGGGATTTAAAG
Found at i:71976099 original size:19 final size:18
Alignment explanation
Indices: 71976057--71976102 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
71976047 TTTCAACTGG
71976057 GTTACTGTTTGAAAAATCC
1 GTTA-TGTTTGAAAAATCC
* *
71976076 ATTATGTTCTGAAAAATCT
1 GTTATGTT-TGAAAAATCC
71976095 GTTATGTT
1 GTTATGTT
71976103 AAGGGCCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (18 bp):
GTTATGTTTGAAAAATCC
Found at i:71983818 original size:48 final size:48
Alignment explanation
Indices: 71983728--71983892 Score: 182
Period size: 48 Copynumber: 3.6 Consensus size: 48
71983718 GCGTGTTGAT
* * *
71983728 GCCATGTCCCAAACA-GGTCTTATACGGGATCACATAATGATGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACGGGATCACATAACGATGCCGAC
* * * *
71983775 GCCATGTCCCAGACATGGTATTACACTGGCTCACATAACGATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCACATAACGATGCCGAC
* *
71983823 GCCATGTCCCAGACATGGTCTTACAC-GG-T---ATTAC-ATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCACATAACGATGCCGAC
* *
71983865 GCCATATCCCAGATATGGTCTTACACGG
1 GCCATGTCCCAGACATGGTCTTACACGG
71983893 TTACACATAT
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 32 0.30
43 5 0.05
46 1 0.01
47 16 0.15
48 51 0.49
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACGGGATCACATAACGATGCCGAC
Found at i:71985087 original size:44 final size:44
Alignment explanation
Indices: 71985025--71985109 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
71985015 TATATATGAG
* *
71985025 GCATCCGAGCTCACTGAGTCGGTCTGAGTTGATTATGGATGCGA
1 GCATCCGAGCTCACTGAGTCGGTCCGAGTTCATTATGGATGCGA
* *
71985069 GCATCCGAGCTTC-TTGAGTTGGTCCGAGTTCATTATGGATG
1 GCATCCGAGC-TCACTGAGTCGGTCCGAGTTCATTATGGATG
71985110 TGATAAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (44 bp):
GCATCCGAGCTCACTGAGTCGGTCCGAGTTCATTATGGATGCGA
Found at i:71987478 original size:49 final size:50
Alignment explanation
Indices: 71987418--71987587 Score: 163
Period size: 49 Copynumber: 3.5 Consensus size: 50
71987408 TGTGTGTCAG
* *
71987418 TGTAAGACCTGTCTAGGACATGGCATCGA-CATT-GATAGATGATAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGAGC-TTCGATAGATGAAAGCCAA
* * * * *
71987467 TGTAAGTCCTGTTTGGGACATGGCATC-AGCTTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAGCTTCGATAGATGAAAGCCAA
* * * * *
71987516 TGTAAGACCTATCTGGGACATGGCATCGA-ATTTGAT-G-TGCAAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAGCTTCGATAGATGAAAGCCAA
*
71987563 TGTAAGACCATGACTGGGACATGGC
1 TGTAAGACC-TGTCTGGGACATGGC
71987588 GTCGGCATCT
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
47 17 0.17
48 16 0.16
49 66 0.66
50 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (50 bp):
TGTAAGACCTGTCTGGGACATGGCATCGAGCTTCGATAGATGAAAGCCAA
Found at i:71987485 original size:93 final size:96
Alignment explanation
Indices: 71987374--71987590 Score: 236
Period size: 98 Copynumber: 2.3 Consensus size: 96
71987364 TATAAGCTAG
* * *
71987374 TGTAAGACC-T-ATCTGGGACATGGCGTCAGCTT-G-T-TGTG-TGTCAGTGTAAGACCTGTCTA
1 TGTAAGACCATGA-CTGGGACATGGCGTCAGCTTCGATATATGAAGTCAGTGTAAGACCTATCTA
71987433 GGACATGGCATCGACA-TTGATAGATG-ATAGCCAA
65 GGACATGGCATCGA-ATTTGAT-G-TGCA-AGCCAA
* ** * *
71987467 TGTAAGTCC-TGTTTGGGACATGGCATCAGCTTCGATATATGAAAGTCAGTGTAAGACCTATCTG
1 TGTAAGACCATGACTGGGACATGGCGTCAGCTTCGATATATG-AAGTCAGTGTAAGACCTATCTA
*
71987531 GGACATGGCATCGAATTTGATGTGCAAGCCAG
65 GGACATGGCATCGAATTTGATGTGCAAGCCAA
71987563 TGTAAGACCATGACTGGGACATGGCGTC
1 TGTAAGACCATGACTGGGACATGGCGTC
71987591 GGCATCTTAT
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
93 27 0.26
94 1 0.01
95 1 0.01
96 18 0.18
97 18 0.18
98 37 0.36
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGACTGGGACATGGCGTCAGCTTCGATATATGAAGTCAGTGTAAGACCTATCTAG
GACATGGCATCGAATTTGATGTGCAAGCCAA
Found at i:71987536 original size:142 final size:137
Alignment explanation
Indices: 71987277--71987539 Score: 332
Period size: 142 Copynumber: 1.9 Consensus size: 137
71987267 TATTAAGAGC
* * ** *
71987277 CAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGAGTTAGTGTAAGACATGTATGG
1 CAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGATGAGAGCCAATGTAAGACATGTATGG
*
71987342 GACATGCATCTGCCTCAAGATATATAAGCTAGTGTAAGACCTATCTGGGACATGGCGTCAGCTTG
66 GACATGCATCAGCCTC-AGATATATAAGCTAGTGTAAGACCTATCTGGGACATGGCGTCAGCTTG
71987407 TTGTGTGT
130 TTGTGTGT
* * * * *
71987415 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGATAGATGATAGCCAATGTAAGTCCTGTT
1 CAGTGTAAGACATGTCTAGGACAT-GCATCGACATTG--AGATGAGAGCCAATGTAAGACATGTA
*
71987480 TGGGACATGGCATCAGCTTC-GATATATGAAAG-TCAGTGTAAGACCTATCTGGGACATGGC
63 TGGGACAT-GCATCAGCCTCAGATATAT--AAGCT-AGTGTAAGACCTATCTGGGACATGGC
71987540 ATCGAATTTG
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
138 22 0.21
139 11 0.10
140 7 0.07
141 28 0.26
142 38 0.36
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (137 bp):
CAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGATGAGAGCCAATGTAAGACATGTATGG
GACATGCATCAGCCTCAGATATATAAGCTAGTGTAAGACCTATCTGGGACATGGCGTCAGCTTGT
TGTGTGT
Found at i:71989751 original size:19 final size:19
Alignment explanation
Indices: 71989719--71989765 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
71989709 TGGAGGACAT
71989719 GGGCGTGTCAAGAGCACAC
1 GGGCGTGTCAAGAGCACAC
* *
71989738 GGGTGTGTCGAGAGCACAC
1 GGGCGTGTCAAGAGCACAC
71989757 GGGCGTGTC
1 GGGCGTGTC
71989766 CTCTGTCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.43, T:0.15
Consensus pattern (19 bp):
GGGCGTGTCAAGAGCACAC
Found at i:71994211 original size:46 final size:46
Alignment explanation
Indices: 71994153--71994327 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
71994143 TGTAACCCGC
*
71994153 CCATAAGCGAACTCAGACTCAACTCAATAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
* * * * *
71994199 CCATAAGTGAACTCGGACTCAACTAAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACAAGCTCGG--G-C--GTTCGCAT
* ** *
71994249 -C-TCA-CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
** * * *
71994292 CCATAAGTAAACTCGGACTCGACTCAACGAGCTCGG
1 CCATAAGCGAACTCAGACTCAACTCAACAAGCTCGG
71994328 ATGCCCAAAT
Statistics
Matches: 98, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 54 0.55
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
Found at i:71994268 original size:93 final size:93
Alignment explanation
Indices: 71994160--71994332 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
71994150 CGCCCATAAG
* ** * *
71994160 CGAACTCAGACTCAACTCAATAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTAA
1 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTAA
71994225 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
71994253 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCGACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTAA
71994318 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
71994333 CAAATATCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTAA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:71998944 original size:44 final size:44
Alignment explanation
Indices: 71998894--71998981 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
71998884 TATGTATGAG
* *
71998894 GCATCCGAGCACGTTGAGTTGGTCCGAGTTCATTAGGGATGCGA
1 GCATCCGAACACATTGAGTTGGTCCGAGTTCATTAGGGATGCGA
* * *
71998938 GCATCCGAACTCATTGAGTTGGTTCGAGTTCATTATGGATGCGA
1 GCATCCGAACACATTGAGTTGGTCCGAGTTCATTAGGGATGCGA
71998982 TAAATGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (44 bp):
GCATCCGAACACATTGAGTTGGTCCGAGTTCATTAGGGATGCGA
Found at i:72004111 original size:48 final size:48
Alignment explanation
Indices: 72004055--72004153 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
72004045 GAGTATATGT
* * *
72004055 GATACATTGAGTTGGTTTCGGGCCATGATATTGGCACGTCGGGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
* * *
72004103 GATACATTGAGTTGGCTTCAGGCCGTGATATTGGCACTTAGTGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
72004151 GAT
1 GAT
72004154 TCCCATGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (48 bp):
GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
Found at i:72014021 original size:28 final size:28
Alignment explanation
Indices: 72013946--72014065 Score: 149
Period size: 28 Copynumber: 4.4 Consensus size: 28
72013936 GATACAAAAT
* *
72013946 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
*
72013973 --T-CTAAGTGAAATAAGTATATGGCAA
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
*
72013998 TGTGCTTAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
* * *
72014026 TGTGCTAAGTGAAACAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
72014054 TGTGCTAAGTGA
1 TGTGCTAAGTGA
72014066 GAAGTTTCCC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
24 19 0.24
25 2 0.03
27 1 0.01
28 58 0.73
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCTATGGCAA
Found at i:72014193 original size:51 final size:51
Alignment explanation
Indices: 72014089--72014285 Score: 303
Period size: 50 Copynumber: 3.9 Consensus size: 51
72014079 TGAACCTTAG
*
72014089 GAATAAAGTAGCTTTGGACACAAGTGT-GTAC-AGTGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTA-TGTGAAGGCCACTTTGT
*
72014139 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
72014190 GAATAAAATAGTTTTGGACACAA-TGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
72014240 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
72014286 CATGTATCTG
Statistics
Matches: 136, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
49 1 0.01
50 71 0.52
51 63 0.46
52 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:72014269 original size:101 final size:101
Alignment explanation
Indices: 72014089--72014285 Score: 301
Period size: 101 Copynumber: 2.0 Consensus size: 101
72014079 TGAACCTTAG
* * *
72014089 GAATAAAGTAGCTTTGGACACAAGTGTGTACAGTGTGAAGGCCACTTTGTGAATATAATAGCTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGTACAGTGTGAAGGCCACTTTATGAATAAAATAGCTTT
*
72014154 GGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
66 GGACACAAGGGTGGTACTATGTGAAGGCCACTTTGT
*
72014190 GAATAAAATAGTTTTGGACACAA-TGTGGTACTA-TGTGAAGGCCACTTTATGAATAAAATAGCT
1 GAATAAAATAGCTTTGGACACAAGTGT-GTAC-AGTGTGAAGGCCACTTTATGAATAAAATAGCT
72014253 TTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
64 TTGGAC-ACAAGGGTGGTACTATGTGAAGGCCAC
72014286 CATGTATCTG
Statistics
Matches: 88, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
100 4 0.05
101 83 0.94
102 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (101 bp):
GAATAAAATAGCTTTGGACACAAGTGTGTACAGTGTGAAGGCCACTTTATGAATAAAATAGCTTT
GGACACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:72018698 original size:40 final size:40
Alignment explanation
Indices: 72018647--72018838 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
72018637 GGATATAGCT
* *
72018647 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
72018687 ACTCCCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* * *
72018727 ACTCGCACCAATGCCTTCGGG-CTTAGCCCAG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * * *
72018766 ACTCGCACAAATGCCTTC-GGATCTTAGTCTGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* ** *
72018806 ACTTAGTGCAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
72018839 ATATCATTCG
Statistics
Matches: 123, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 65 0.53
41 23 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:72018755 original size:79 final size:79
Alignment explanation
Indices: 72018615--72018791 Score: 207
Period size: 79 Copynumber: 2.2 Consensus size: 79
72018605 ATTCCCGAAT
* * * *
72018615 CAAATACCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCC-GG
1 CAAATGCCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGA
*
72018679 TTATAGTAACTCCCA
66 AT-TAGTAACTCCCA
* * * *
72018694 CAAATGCCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTCGGAACTTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCA
*
72018757 GAATTAGTAACTCGCA
64 GAATTAGTAACTCCCA
*
72018773 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGAACTTA
72018792 GTCTGGATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 53 0.64
80 30 0.36
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGA
ATTAGTAACTCCCA
Found at i:72020562 original size:28 final size:27
Alignment explanation
Indices: 72020499--72020568 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
72020489 ATAGTGAGTC
72020499 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
72020526 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
72020554 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72020569 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:72028566 original size:53 final size:54
Alignment explanation
Indices: 72028409--72028567 Score: 144
Period size: 53 Copynumber: 3.0 Consensus size: 54
72028399 AGCAAATCAT
* * * * * * * *
72028409 GTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATG-GAAAGTTTAATAAGGCAAAGGTACCAC
* ** * *
72028464 GTAAGACCATGCCACAG-CATGGCAATGGTGAG-TTCATAAGGCAAGGGTACCAC
1 GTAAGACCATGTCA-AGACATGGCAATGGAAAGTTTAATAAGGCAAAGGTACCAC
* *
72028517 GTAAGACCATGTCAAGACATGGCAATGGCAAGTTTAAAAAGG-AAAGGTACC
1 GTAAGACCATGTCAAGACATGGCAATGGAAAGTTTAATAAGGCAAAGGTACC
72028568 TGTGATCCTT
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
52 2 0.02
53 49 0.59
54 8 0.10
55 22 0.27
56 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGAAAGTTTAATAAGGCAAAGGTACCAC
Found at i:72044476 original size:40 final size:40
Alignment explanation
Indices: 72044370--72044553 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
72044360 TGCTGGAAAT
* * * * * **
72044370 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
72044410 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
72044450 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
72044488 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
72044529 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
72044554 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:72052275 original size:40 final size:40
Alignment explanation
Indices: 72052169--72052352 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
72052159 TGCTGGAAAT
* * * * * **
72052169 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
72052209 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
72052249 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
72052287 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
72052328 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
72052353 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:72062746 original size:18 final size:18
Alignment explanation
Indices: 72062723--72062759 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
72062713 GCTTGTAAAG
72062723 TTAGAAACGAGCCAAAAA
1 TTAGAAACGAGCCAAAAA
*
72062741 TTAGAAACGAGTCAAAAA
1 TTAGAAACGAGCCAAAAA
72062759 T
1 T
72062760 CACATACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.16
Consensus pattern (18 bp):
TTAGAAACGAGCCAAAAA
Found at i:72063420 original size:79 final size:79
Alignment explanation
Indices: 72063286--72063438 Score: 234
Period size: 79 Copynumber: 1.9 Consensus size: 79
72063276 CTTTTTAAAA
* * * * * * *
72063286 CCATATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTTGTTGGATTTTTTGCCCC
1 CCATATTTGACTAGTAAATATCAAATAACAATATTTACAAACTTACTTATCGGATTTGTGGCCCC
72063351 GAAACCACTATTTC
66 GAAACCACTATTTC
*
72063365 CCATATTTGACTAGTAAATATCAAATAACAATATTTACTAACTTACTTATCGGATTTGTGGCCCC
1 CCATATTTGACTAGTAAATATCAAATAACAATATTTACAAACTTACTTATCGGATTTGTGGCCCC
72063430 GAAACCACT
66 GAAACCACT
72063439 GTCTCTGACA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 66 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (79 bp):
CCATATTTGACTAGTAAATATCAAATAACAATATTTACAAACTTACTTATCGGATTTGTGGCCCC
GAAACCACTATTTC
Found at i:72072937 original size:24 final size:24
Alignment explanation
Indices: 72072910--72072958 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
72072900 CTGAGGATAA
72072910 AAGAACATATAGAATGCCTAGAAG
1 AAGAACATATAGAATGCCTAGAAG
*
72072934 AAGAACATATAGAATTCCTAGAAG
1 AAGAACATATAGAATGCCTAGAAG
72072958 A
1 A
72072959 GATCATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.18
Consensus pattern (24 bp):
AAGAACATATAGAATGCCTAGAAG
Found at i:72074911 original size:6 final size:6
Alignment explanation
Indices: 72074900--72075171 Score: 249
Period size: 6 Copynumber: 44.8 Consensus size: 6
72074890 AACCAAAATG
*
72074900 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
72074948 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
72074997 AGAATC AGTAA-C AGAATT AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
72075045 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AG-AATC
* *
72075094 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
72075142 AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
72075172 GTGAATGCAA
Statistics
Matches: 219, Mismatches: 24, Indels: 46
0.76 0.08 0.16
Matches are distributed among these distances:
5 16 0.07
6 184 0.84
7 15 0.07
8 4 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:72074915 original size:30 final size:30
Alignment explanation
Indices: 72074900--72075171 Score: 354
Period size: 30 Copynumber: 9.4 Consensus size: 30
72074890 AACCAAAATG
*
72074900 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
72074930 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
72074960 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
* *
72074985 AGAATCAGAATCAGAATCAGTAACAGAATT
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
72075015 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
72075045 AGAATCAGAATCAGAATTACGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
72075070 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
72075100 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
72075130 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
72075161 AGAATCAGAAT
1 AGAATCAGAAT
72075172 GTGAATGCAA
Statistics
Matches: 213, Mismatches: 12, Indels: 33
0.83 0.05 0.13
Matches are distributed among these distances:
24 4 0.02
25 38 0.18
26 2 0.01
27 2 0.01
28 2 0.01
29 3 0.01
30 136 0.64
31 26 0.12
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:72075000 original size:85 final size:85
Alignment explanation
Indices: 72074900--72075171 Score: 517
Period size: 85 Copynumber: 3.2 Consensus size: 85
72074890 AACCAAAATG
*
72074900 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
72074965 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
72074985 AGAATCAGAATCAGAATCAGTAACAGAATTAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
72075050 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
72075070 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
72075135 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
72075155 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
72075172 GTGAATGCAA
Statistics
Matches: 183, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 183 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:72075326 original size:27 final size:26
Alignment explanation
Indices: 72075289--72075354 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
72075279 AGCATGGCTG
*
72075289 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* **
72075315 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
72075342 CCAGAATCAGATA
1 CCAGAA-CAGATA
72075355 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:72075359 original size:27 final size:27
Alignment explanation
Indices: 72075308--72075360 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72075298 ATATCGTGAC
* *
72075308 AGAGTCACCAGATACAGATATTGTGGT
1 AGAGCCACCAGATACAGATAATGTGGT
72075335 AGAGCCACCAGA-ATCAGATAATGTGG
1 AGAGCCACCAGATA-CAGATAATGTGG
72075361 CAAACCTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGT
Found at i:72075575 original size:22 final size:22
Alignment explanation
Indices: 72075527--72075585 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
72075517 GTAAATACGT
*
72075527 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
72075549 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
72075571 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
72075586 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:72075746 original size:26 final size:25
Alignment explanation
Indices: 72075673--72075754 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 25
72075663 TCGATCGGTC
* *
72075673 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTG-CAGAGCCACCAG
72075699 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGT-GCAGAGCCACCAG
*
72075726 AACAGATATTTGTGCATAGCCACCAG
1 AACAGATA-TTGTGCAGAGCCACCAG
72075752 AAC
1 AAC
72075755 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 23 0.46
27 26 0.52
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.20
Consensus pattern (25 bp):
AACAGATATTGTGCAGAGCCACCAG
Found at i:72075983 original size:27 final size:27
Alignment explanation
Indices: 72075953--72076140 Score: 205
Period size: 27 Copynumber: 7.0 Consensus size: 27
72075943 GGGGCAAAAT
* * *
72075953 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72075980 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72076007 GGTATTTCTACCCTACAAGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
72076034 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72076061 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72076088 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
72076115 GAAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
72076141 TAGTAATTTC
Statistics
Matches: 135, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72076000 original size:54 final size:54
Alignment explanation
Indices: 72075952--72076140 Score: 236
Period size: 54 Copynumber: 3.5 Consensus size: 54
72075942 AGGGGCAAAA
* * *
72075952 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTT
* *
72076006 TGGT-ATTTCTACCCTACAAGGTTATTTCGATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTT
* * * *
72076060 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTT
* ** * *
72076114 CGAAAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
72076141 TAGTAATTTC
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 4 0.03
54 109 0.94
55 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTT
Found at i:72076097 original size:81 final size:81
Alignment explanation
Indices: 72075956--72076148 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 81
72075946 GCAAAATGGT
* * * * * * ** *
72075956 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCT
1 AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
72076021 ACAAGGTTATTTCGAT
66 ACAAGGGTATTTCGAA
* * *
72076037 AATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
72076102 ATAGGGGTATTTCGAA
66 ACAAGGGTATTTCGAA
*
72076118 AATTCTACCCTACAGGGGTATTTTAGTAATT
1 AATTCTACCCTACAGGGGTATTTTGGTAATT
72076149 TCACAATCAA
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 94 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGAA
Found at i:72076217 original size:80 final size:81
Alignment explanation
Indices: 72076153--72076424 Score: 372
Period size: 80 Copynumber: 3.4 Consensus size: 81
72076143 GTAATTTCAC
*
72076153 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTGAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
72076218 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* ** * * * * *
72076234 AATCGAGGGTAAAATAGTAATTCTGTAACT-GAGGGTAAAACGGTAATTCTGTAAA-CTGAGGAT
1 AATCAAGGGTAAAACGGTAATTTTGAAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGT
72076297 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTGTA
* *
72076314 AA-CTAAGGGTAAAACGGTAA-TTTGAAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTTTGAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT
72076377 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTGTA
* * *
72076394 AATCAAGGGTAAAACGATAATTCTGTAAATC
1 AATCAAGGGTAAAACGGTAATTTTGAAAATC
72076425 AGGAGTACTT
Statistics
Matches: 163, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
79 8 0.05
80 122 0.75
81 33 0.20
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTGAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:72076425 original size:27 final size:27
Alignment explanation
Indices: 72076153--72076424 Score: 354
Period size: 27 Copynumber: 10.1 Consensus size: 27
72076143 GTAATTTCAC
* * **
72076153 AATCAAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72076180 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
72076207 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
72076234 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72076261 ACT-GAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72076287 AA-CTGAGGATAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
72076314 AA-CTAAGGGTAAAACGGTAATT-TGAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
72076340 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
72076367 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72076394 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
72076421 AATC
1 AATC
72076425 AGGAGTACTT
Statistics
Matches: 220, Mismatches: 21, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
26 44 0.20
27 176 0.80
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:72076443 original size:107 final size:106
Alignment explanation
Indices: 72076153--72076427 Score: 356
Period size: 107 Copynumber: 2.6 Consensus size: 106
72076143 GTAATTTCAC
* * ** *
72076153 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGTA
* * **
72076218 AAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
65 AAACGGTAATT-TGAAAATCGAGGGTAAAACAGTAATTCTAAA
* * *
72076261 ACT-GAGGGTAAAACGGTAATTCTGTAAA-CTGAGGATAAAACGGTAATTCTGTAAACTAAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAA-TCAGGGT
* *
72076324 AAAACGGTAATTTGAAAATCGAGGGTAAAACGGTAATTTTAAA
64 AAAACGGTAATTTGAAAATCGAGGGTAAAACAGTAATTCTAAA
* *
72076367 AATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTGTAAATCAGG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGG
72076428 AGTACTTTGG
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
106 32 0.22
107 108 0.75
108 4 0.03
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (106 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAA
AACGGTAATTTGAAAATCGAGGGTAAAACAGTAATTCTAAA
Found at i:72080903 original size:40 final size:40
Alignment explanation
Indices: 72080775--72080905 Score: 167
Period size: 40 Copynumber: 3.2 Consensus size: 40
72080765 ATGCTGGAAA
* *
72080775 TTATATCCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATAT-CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72080816 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72080856 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72080896 TTATATCCGG
1 TTATATCCGG
72080906 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.05
40 70 0.90
41 4 0.05
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72083546 original size:70 final size:70
Alignment explanation
Indices: 72083459--72084043 Score: 972
Period size: 70 Copynumber: 8.2 Consensus size: 70
72083449 CAAGTGACAG
*
72083459 AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72083524 TTTCA
66 TTTCA
*
72083529 AAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72083594 TTTCA
66 TTTCA
*
72083599 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72083664 TTTCA
66 TTTCA
*
72083669 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTTCAA
72083734 TTTATGTTTCA
60 TTTATGTTTCA
*
72083745 AAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72083810 TTTCA
66 TTTCA
*
72083815 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72083880 TTTCA
66 TTTCA
*
72083885 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTCA
72083950 ATTTATGTTTCA
59 ATTTATGTTTCA
*
72083962 AAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
72084027 TTTCAA
66 TTTC-A
72084033 AAATCAACTCA
1 AAATCAACTCA
72084044 GGTGAGTTGA
Statistics
Matches: 487, Mismatches: 14, Indels: 27
0.92 0.03 0.05
Matches are distributed among these distances:
70 335 0.69
71 15 0.03
72 1 0.00
75 2 0.00
76 69 0.14
77 65 0.13
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
TTTCA
Found at i:72083827 original size:216 final size:216
Alignment explanation
Indices: 72083459--72084043 Score: 1074
Period size: 216 Copynumber: 2.7 Consensus size: 216
72083449 CAAGTGACAG
* *
72083459 AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTCAA
* *
72083518 TTTATGTTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
66 TTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
72083583 TTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAG
131 TTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAG
72083648 GTAATTTCAATTTATGTTTCA
196 GTAATTTCAATTTATGTTTCA
72083669 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTCAA
72083734 TTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
66 TTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
72083799 TTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAG
131 TTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAG
72083864 GTAATTTCAATTTATGTTTCA
196 GTAATTTCAATTTATGTTTCA
72083885 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA-TTTCA
72083950 ATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
65 ATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
72084015 TTTCAATTTATGTTTCAAAAATCAACTCA
130 TTTCAATTTATGTTTC-AAAATCAACTCA
72084044 GGTGAGTTGA
Statistics
Matches: 363, Mismatches: 4, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 48 0.13
215 1 0.00
216 216 0.60
217 86 0.24
218 12 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (216 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTCAA
TTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
TTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAG
GTAATTTCAATTTATGTTTCA
Found at i:72083960 original size:77 final size:77
Alignment explanation
Indices: 72083868--72084023 Score: 294
Period size: 77 Copynumber: 2.0 Consensus size: 77
72083858 GTTGAGGTAA
*
72083868 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
72083933 GGTAATTTCAAT
66 GGTAATTTCAAT
*
72083945 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
72084010 GGTAATTTCAAT
66 GGTAATTTCAAT
72084022 TT
1 TT
72084024 ATGTTTCAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
GGTAATTTCAAT
Found at i:72084185 original size:54 final size:52
Alignment explanation
Indices: 72084093--72084247 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 52
72084083 CTACTTTCCA
* *
72084093 AATTCCTGTTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
* *
72084147 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
**
72084198 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
72084247 A
1 A
72084248 GGTCATACGT
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.43
49 4 0.04
51 1 0.01
54 44 0.49
55 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:72085004 original size:35 final size:35
Alignment explanation
Indices: 72084953--72085057 Score: 176
Period size: 35 Copynumber: 3.0 Consensus size: 35
72084943 CACTTGCCTC
72084953 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
*
72084988 TTCCCACTCTCTCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
72085023 CT-CCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
72085057 T
1 T
72085058 CACACACCCC
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
34 30 0.46
35 35 0.54
ACGTcount: A:0.16, C:0.48, G:0.12, T:0.24
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:72085513 original size:33 final size:31
Alignment explanation
Indices: 72085465--72085536 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 31
72085455 AGAGGGGAAG
72085465 CAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAATCCAG-AAAAAATTTCCAGCA
*
72085496 CCAAAAAAAAATTTCCAGAAAAAATTTCCAGCA
1 -CAAAAAAAAA-ATCCAGAAAAAATTTCCAGCA
72085529 -AAAAAAAA
1 CAAAAAAAA
72085537 CCAAAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
31 8 0.22
32 16 0.43
33 13 0.35
ACGTcount: A:0.62, C:0.19, G:0.06, T:0.12
Consensus pattern (31 bp):
CAAAAAAAAAATCCAGAAAAAATTTCCAGCA
Found at i:72085519 original size:13 final size:14
Alignment explanation
Indices: 72085501--72085533 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
72085491 CAGCACCAAA
72085501 AAAAAATTTCCAG-
1 AAAAAATTTCCAGC
72085514 AAAAAATTTCCAGC
1 AAAAAATTTCCAGC
72085528 AAAAAA
1 AAAAAA
72085534 AAACCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.61, C:0.15, G:0.06, T:0.18
Consensus pattern (14 bp):
AAAAAATTTCCAGC
Found at i:72086376 original size:21 final size:21
Alignment explanation
Indices: 72086346--72086396 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
72086336 ATTTCTAATC
72086346 TGTATATATATATATATATTA
1 TGTATATATATATATATATTA
*
72086367 TGTGTATATATATATATATTA
1 TGTATATATATATATATATTA
72086388 TGTATATAT
1 TGTATATAT
72086397 GCCATTAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (21 bp):
TGTATATATATATATATATTA
Found at i:72086412 original size:2 final size:2
Alignment explanation
Indices: 72086348--72086396 Score: 57
Period size: 2 Copynumber: 25.5 Consensus size: 2
72086338 TTCTAATCTG
* *
72086348 TA TA TA TA TA TA TA TA T- TA TG TG TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
72086388 TG TA TA TA T
1 TA TA TA TA T
72086397 GCCATTAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
1 2 0.05
2 39 0.95
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (2 bp):
TA
Found at i:72086693 original size:21 final size:21
Alignment explanation
Indices: 72086668--72086710 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
72086658 ATATTTTCTT
*
72086668 TTATTGTAGATA-TTATTATTA
1 TTATTGTACATACTT-TTATTA
*
72086689 TTATTTTACATACTTTTATTA
1 TTATTGTACATACTTTTATTA
72086710 T
1 T
72086711 ATATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (21 bp):
TTATTGTACATACTTTTATTA
Found at i:72101364 original size:29 final size:29
Alignment explanation
Indices: 72101331--72101412 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
72101321 TGACGAGATA
*
72101331 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
72101360 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
72101389 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
72101413 AAAAAATAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:72109960 original size:15 final size:15
Alignment explanation
Indices: 72109940--72109981 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
72109930 GTTGTAAATG
72109940 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
72109955 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
72109970 GGATTTCCTTAT
1 GGATTTCCTTAT
72109982 TCTGGGCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:72112837 original size:47 final size:47
Alignment explanation
Indices: 72112719--72112923 Score: 221
Period size: 47 Copynumber: 4.5 Consensus size: 47
72112709 ATACGTGTAA
* ** * *
72112719 GTGGTGCTAAGTTGATATACCACAATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-TAAC
* *
72112767 GTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
72112814 GTGGTCCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* * *
72112852 GTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
*
72112899 GTGGTGCTAAGTGGACATACCACGG
1 GTGGTGCTAAGTGGATATACCACGG
72112924 GTAAACATGT
Statistics
Matches: 129, Mismatches: 19, Indels: 19
0.77 0.11 0.11
Matches are distributed among these distances:
38 29 0.22
39 1 0.01
40 2 0.02
41 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 55 0.43
48 36 0.28
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:72112853 original size:85 final size:85
Alignment explanation
Indices: 72112758--72112964 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
72112748 ACATATTGAT
* *
72112758 ACATGTAACGTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTCCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTCCTA
* *
72112823 AGTGGATATACCACGGTTAA
66 AGTGGACATACCACGGGTAA
* *
72112843 ACATGTAACGTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTCCTA
72112908 AGTGGACATACCACGGGTAA
66 AGTGGACATACCACGGGTAA
*
72112928 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
72112965 TACATGTTAA
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 114 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTCCTA
AGTGGACATACCACGGGTAA
Found at i:72112862 original size:38 final size:38
Alignment explanation
Indices: 72112810--72112971 Score: 162
Period size: 38 Copynumber: 4.0 Consensus size: 38
72112800 ATTGATTCAT
*
72112810 TAACGTGGTCCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
72112848 TAACGTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-C-A-T--G
* *
72112895 TAACGTGGTGCTAAGTGGACATACCACGGGTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
72112933 TAACATGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
72112971 T
1 T
72112972 TAATTTGAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
38 62 0.61
40 2 0.02
41 2 0.02
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
47 27 0.27
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:72112899 original size:132 final size:132
Alignment explanation
Indices: 72112679--72112923 Score: 348
Period size: 132 Copynumber: 1.9 Consensus size: 132
72112669 CGGAATGAAA
* * * *
72112679 AACGTGGTGCTAAGTGGATATACCACAGTTATACGTGTAAGTGGTGCTAAGTTGATATACCACAA
1 AACGTGGTCCTAAGTGGATATACCACAGTTAAACATGTAAGTGGTGCTAAGTGGATATACCACAA
* * * *
72112744 TTACACATATTGATACATGTAACGTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCA
66 TTACACATATCGATACATGTAACGTGGTGCTAAGTGGACATACCACGGTTACATATATTGATTCA
72112809 TT
131 TT
* * *
72112811 AACGTGGTCCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTCCTAAGTGGATATACCACAGTTAAACATGTAA-GTGGTGCTAAGTGGATATACCACA
* * *
72112876 TTTACATATATCGATTCAT-TAACGTGGTGCTAAGTGGACATACCACGG
65 ATTACACATATCGATACATGTAACGTGGTGCTAAGTGGACATACCACGG
72112924 GTAAACATGT
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 62 0.63
133 36 0.37
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (132 bp):
AACGTGGTCCTAAGTGGATATACCACAGTTAAACATGTAAGTGGTGCTAAGTGGATATACCACAA
TTACACATATCGATACATGTAACGTGGTGCTAAGTGGACATACCACGGTTACATATATTGATTCA
TT
Found at i:72119311 original size:44 final size:44
Alignment explanation
Indices: 72119256--72119340 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
72119246 GATATAACGA
*
72119256 TCTCTCACACTTAGTGCCATCACATTAAACTGTATCTATCTCGG
1 TCTCGCACACTTAGTGCCATCACATTAAACTGTATCTATCTCGG
* *
72119300 TCTCGCACACTTAGTGCCATTATATTAAACTGTATCTATCT
1 TCTCGCACACTTAGTGCCATCACATTAAACTGTATCTATCT
72119341 TAGTATTGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (44 bp):
TCTCGCACACTTAGTGCCATCACATTAAACTGTATCTATCTCGG
Found at i:72119354 original size:44 final size:44
Alignment explanation
Indices: 72119261--72119361 Score: 139
Period size: 44 Copynumber: 2.3 Consensus size: 44
72119251 AACGATCTCT
* *
72119261 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCGGTCTCG
1 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
* * * *
72119305 CACACTTAGTGCCATTATATTAAACTGTATCTATCTTAGTATTG
1 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
*
72119349 TACACTTAGTGCC
1 CACACTTAGTGCC
72119362 TCATATAGCC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.36
Consensus pattern (44 bp):
CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
Found at i:72119409 original size:40 final size:40
Alignment explanation
Indices: 72119365--72119440 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
72119355 TAGTGCCTCA
*
72119365 TATAGCCAAAGCTATTCT-AATTCGCACACTAAGTGCTATT
1 TATAGCCAAAGCTATTCTGAA-ACGCACACTAAGTGCTATT
*** *
72119405 TATAGTTGAAGCTATTTTGAAACGCACACTAAGTGC
1 TATAGCCAAAGCTATTCTGAAACGCACACTAAGTGC
72119441 CAAACATAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 28 0.93
41 2 0.07
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (40 bp):
TATAGCCAAAGCTATTCTGAAACGCACACTAAGTGCTATT
Found at i:72129119 original size:39 final size:39
Alignment explanation
Indices: 72129074--72129271 Score: 342
Period size: 39 Copynumber: 5.1 Consensus size: 39
72129064 ATGCAAGACA
*
72129074 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
72129113 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
72129152 CTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
72129191 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
72129230 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
72129269 CTG
1 CTG
72129272 ATAATATAAT
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:72131182 original size:2 final size:2
Alignment explanation
Indices: 72131175--72131211 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
72131165 GCATACATAC
72131175 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72131212 AGCTTACAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:72142639 original size:47 final size:47
Alignment explanation
Indices: 72142586--72143585 Score: 1599
Period size: 47 Copynumber: 21.3 Consensus size: 47
72142576 ACAAGATATG
72142586 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72142633 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72142680 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72142727 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72142774 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
72142821 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72142868 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
72142915 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72142962 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143009 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72143056 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143103 TACATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72143150 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
72143197 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
72143244 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143291 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143338 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72143385 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143432 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
72143479 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72143526 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72143573 TAAATGTGATAAG
1 TATATGTGATAAG
72143586 TCCCGAAGGG
Statistics
Matches: 878, Mismatches: 71, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
46 4 0.00
47 870 0.99
48 4 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:72142664 original size:22 final size:22
Alignment explanation
Indices: 72142636--72142711 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
72142626 AAGTGTATAT
72142636 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
72142658 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
72142682 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
72142705 ATGTGAT
1 ATGTGAT
72142712 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72142993 original size:22 final size:22
Alignment explanation
Indices: 72142965--72143040 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
72142955 AGGTGTATAT
72142965 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
72142987 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
72143011 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
72143034 ATGTGAT
1 ATGTGAT
72143041 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72143322 original size:22 final size:22
Alignment explanation
Indices: 72143294--72143369 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
72143284 AGGTGTATAT
72143294 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
72143316 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
72143340 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
72143363 ATGTGAT
1 ATGTGAT
72143370 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72150081 original size:7 final size:7
Alignment explanation
Indices: 72150071--72150097 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
72150061 GATAATGCCC
72150071 GATAAAT
1 GATAAAT
72150078 GATAAAT
1 GATAAAT
72150085 GATAAAT
1 GATAAAT
72150092 GATAAA
1 GATAAA
72150098 AATGGCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:72154000 original size:215 final size:215
Alignment explanation
Indices: 72153629--72154061 Score: 866
Period size: 215 Copynumber: 2.0 Consensus size: 215
72153619 AAACATCAAA
72153629 AACGGGGCTGGAATGCACTTATTATTGAGCTTGGTAGCTTGAAAACCCTAACCATGTCTTCTCCT
1 AACGGGGCTGGAATGCACTTATTATTGAGCTTGGTAGCTTGAAAACCCTAACCATGTCTTCTCCT
72153694 ATGCAATATTCGGCCATAGGTAGAAGATGGACAAGAAATTTGGCTTTTATTTTGTCTTTTAGTTC
66 ATGCAATATTCGGCCATAGGTAGAAGATGGACAAGAAATTTGGCTTTTATTTTGTCTTTTAGTTC
72153759 ATTTAATGACCAAATGACCAAAATGCCCTTTTAGCCTTTCTTTAAAATTTTATCCATCCAAGCCC
131 ATTTAATGACCAAATGACCAAAATGCCCTTTTAGCCTTTCTTTAAAATTTTATCCATCCAAGCCC
72153824 ATTTTTGTCCAAAATTTTAG
196 ATTTTTGTCCAAAATTTTAG
72153844 AACGGGGCTGGAATGCACTTATTATTGAGCTTGGTAGCTTGAAAACCCTAACCATGTCTTCTCCT
1 AACGGGGCTGGAATGCACTTATTATTGAGCTTGGTAGCTTGAAAACCCTAACCATGTCTTCTCCT
72153909 ATGCAATATTCGGCCATAGGTAGAAGATGGACAAGAAATTTGGCTTTTATTTTGTCTTTTAGTTC
66 ATGCAATATTCGGCCATAGGTAGAAGATGGACAAGAAATTTGGCTTTTATTTTGTCTTTTAGTTC
72153974 ATTTAATGACCAAATGACCAAAATGCCCTTTTAGCCTTTCTTTAAAATTTTATCCATCCAAGCCC
131 ATTTAATGACCAAATGACCAAAATGCCCTTTTAGCCTTTCTTTAAAATTTTATCCATCCAAGCCC
72154039 ATTTTTGTCCAAAATTTTAG
196 ATTTTTGTCCAAAATTTTAG
72154059 AAC
1 AAC
72154062 TTGGTCAAAT
Statistics
Matches: 218, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 218 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (215 bp):
AACGGGGCTGGAATGCACTTATTATTGAGCTTGGTAGCTTGAAAACCCTAACCATGTCTTCTCCT
ATGCAATATTCGGCCATAGGTAGAAGATGGACAAGAAATTTGGCTTTTATTTTGTCTTTTAGTTC
ATTTAATGACCAAATGACCAAAATGCCCTTTTAGCCTTTCTTTAAAATTTTATCCATCCAAGCCC
ATTTTTGTCCAAAATTTTAG
Found at i:72160152 original size:43 final size:43
Alignment explanation
Indices: 72160058--72160174 Score: 157
Period size: 43 Copynumber: 2.7 Consensus size: 43
72160048 TTATTGGGAT
*
72160058 TTACGTGTAAGACCATATCTGGGATATGACATCGATATGAAAC
1 TTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAAAC
* * * *
72160101 TT-TGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA-
1 TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAAAC
*
72160143 TTACATGTAAGACCATATCTGGGATATGGCAT
1 TTACGTGTAAGACCATATCTGGGATATGGCAT
72160175 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
TTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAAAC
Found at i:72166541 original size:42 final size:43
Alignment explanation
Indices: 72166482--72166578 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
72166472 TGAGATCATG
* * *
72166482 TGTAAGACCATATCTGGGATA-TGGCATTGAGATGATACTT-CA
1 TGTAAGACCATAGCTGGGATATTGGCATCGAGATGAGA-TTACA
* *
72166524 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTACA
1 TGTAAGACCATAGCTGGGATATTGGCATCGAGATGAGATTACA
72166567 TGTAAGACCATA
1 TGTAAGACCATA
72166579 TCTAAGATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
42 21 0.44
43 27 0.56
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGATATTGGCATCGAGATGAGATTACA
Found at i:72168896 original size:123 final size:123
Alignment explanation
Indices: 72168677--72169013 Score: 593
Period size: 123 Copynumber: 2.7 Consensus size: 123
72168667 ATTATGTGAT
72168677 ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
1 ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
*
72168742 TAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAAA
66 TAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAA
72168800 ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
1 ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
72168865 TAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAA
66 TAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAA
** * * * *
72168923 ATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGGGC
1 ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
* *
72168988 TAAGTCCCGAAGACATTTATGCTAGT
66 TAAGTCCCGAAGGCAATTATGCTAGT
72169014 AATTATATCC
Statistics
Matches: 205, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
ATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGGGC
TAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAA
Found at i:72169037 original size:40 final size:40
Alignment explanation
Indices: 72168982--72169225 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
72168972 TGAATGATAC
* * * * **
72168982 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
72169022 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
72169062 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
72169102 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
72169142 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
72169182 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
72169222 CCGG
1 CCGG
72169226 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:72174334 original size:11 final size:11
Alignment explanation
Indices: 72174320--72174395 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
72174310 CAATATTGAT
72174320 ATGATATGCAC
1 ATGATATGCAC
*
72174331 ATGATATG--T
1 ATGATATGCAC
72174340 ATGATATGCAC
1 ATGATATGCAC
*
72174351 ATGATATGTAC
1 ATGATATGCAC
72174362 --GATATGCAC
1 ATGATATGCAC
*
72174371 ATGATATG--T
1 ATGATATGCAC
72174380 ATGATATGCAC
1 ATGATATGCAC
72174391 ATGAT
1 ATGAT
72174396 GTATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72174344 original size:20 final size:20
Alignment explanation
Indices: 72174319--72174395 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
72174309 ACAATATTGA
72174319 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
72174339 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
72174359 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
72174379 TATGATATGCACATGAT
1 TATGATATGCACATGAT
72174396 GTATTCATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:72174345 original size:9 final size:9
Alignment explanation
Indices: 72174331--72174387 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72174321 TGATATGCAC
72174331 ATGATATGT
1 ATGATATGT
*
72174340 ATGATATGCAC
1 ATGATATG--T
72174351 ATGATATGT
1 ATGATATGT
* *
72174360 ACGATATGCAC
1 ATGATATG--T
72174371 ATGATATGT
1 ATGATATGT
72174380 ATGATATG
1 ATGATATG
72174388 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:72174474 original size:26 final size:25
Alignment explanation
Indices: 72174444--72174517 Score: 103
Period size: 26 Copynumber: 2.9 Consensus size: 25
72174434 GGATGAAGTG
72174444 CAAAAAGGCTTATGCCCCAGTTTAC
1 CAAAAAGGCTTATGCCCCAGTTTAC
* *
72174469 CGAAAAGGGTTTATGCCCCAGTTTAC
1 C-AAAAAGGCTTATGCCCCAGTTTAC
*
72174495 CCAAAAGGACTTATGCCCCAGTT
1 CAAAAAGG-CTTATGCCCCAGTT
72174518 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 6 0.14
26 36 0.86
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (25 bp):
CAAAAAGGCTTATGCCCCAGTTTAC
Found at i:72174779 original size:32 final size:32
Alignment explanation
Indices: 72174738--72174802 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
72174728 CATTTATAGT
72174738 AAAGGCTTCGGCCCAATAATATGAAATATGAA
1 AAAGGCTTCGGCCCAATAATATGAAATATGAA
** *
72174770 AAAGGCTTCGGCCCAATGTTATGCAATATGAA
1 AAAGGCTTCGGCCCAATAATATGAAATATGAA
72174802 A
1 A
72174803 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGAA
Found at i:72182393 original size:25 final size:25
Alignment explanation
Indices: 72182346--72182393 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72182336 TTATAGTATG
* * *
72182346 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
72182371 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
72182394 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Done.