Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 243 of 378
Found at i:72211719 original size:40 final size:40
Alignment explanation
Indices: 72211663--72211830 Score: 170
Period size: 40 Copynumber: 4.2 Consensus size: 40
72211653 CAATTGAATC
*
72211663 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
72211704 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
72211743 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
72211783 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
72211823 ATATCCGG
1 ATATCCGG
72211831 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 92 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:72211798 original size:80 final size:80
Alignment explanation
Indices: 72211665--72211830 Score: 237
Period size: 80 Copynumber: 2.1 Consensus size: 80
72211655 ATTGAATCAT
* *
72211665 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
72211730 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
72211745 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACATTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* *
72211808 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
72211825 ATCCGG
1 ATCCGG
72211831 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 71 0.92
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:72215087 original size:40 final size:40
Alignment explanation
Indices: 72214885--72215087 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
72214875 GAGTTTAACT
** *
72214885 GGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
72214925 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
72214965 AGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
72215005 GGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
* *
72215045 GGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
72215085 GGA
1 GGA
72215088 CATCATTCGA
Statistics
Matches: 144, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 129 0.90
41 11 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:72220593 original size:28 final size:28
Alignment explanation
Indices: 72220548--72220616 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
72220538 TATGAGATTG
* * *
72220548 GCACTAAGTGTACGAGTTTAATT-GTATA
1 GCACTAAGTGTGCAAGTTTAATTATTA-A
*
72220576 GCACTAAGTGTGCAAGTTTGATTATTAA
1 GCACTAAGTGTGCAAGTTTAATTATTAA
*
72220604 GCACTAAGCGTGC
1 GCACTAAGTGTGC
72220617 GAACTTACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTATTAA
Found at i:72223626 original size:29 final size:29
Alignment explanation
Indices: 72223593--72223666 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
72223583 GTGACGAGAT
72223593 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
72223622 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
72223651 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72223667 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:72223682 original size:29 final size:29
Alignment explanation
Indices: 72223650--72223725 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
72223640 CTGGAAATAT
* *
72223650 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
72223679 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
72223708 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
72223726 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:72223683 original size:58 final size:58
Alignment explanation
Indices: 72223593--72223725 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
72223583 GTGACGAGAT
* * * * *
72223593 TGGCACTAAGTGTGCGTGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCT-GAAATCACA
*** * * * *
72223651 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
72223709 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
72223726 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:72225640 original size:28 final size:28
Alignment explanation
Indices: 72225589--72225655 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
72225579 GTAAGTTTGT
*
72225589 ACACTTAGTGCTTAATAATCAAACTCGC
1 ACACTTAGTGCTTAACAATCAAACTCGC
*
72225617 ACACTTAGTGC-TATACAATTAAACTCGC
1 ACACTTAGTGCTTA-ACAATCAAACTCGC
72225645 ACACTTAGTGC
1 ACACTTAGTGC
72225656 CAATCTCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 2 0.06
28 34 0.94
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGCTTAACAATCAAACTCGC
Found at i:72237289 original size:40 final size:40
Alignment explanation
Indices: 72237245--72237388 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
72237235 CCTACTTGAA
* *
72237245 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
1 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTTG
*
72237285 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTA
1 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
* * ** *
72237325 CTAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGG
1 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
72237365 TTATATCC-GGTTAA-ATCCCGAAGG
1 TTATATCCGGGTTAAGA-CCCGAAGG
72237389 TACGTGACTC
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.15
40 73 0.80
41 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
Found at i:72245391 original size:40 final size:40
Alignment explanation
Indices: 72245336--72245499 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
72245326 TGAATGATAC
* * *
72245336 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
72245376 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
72245416 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
72245456 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
72245496 CCGG
1 CCGG
72245500 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:72245469 original size:80 final size:80
Alignment explanation
Indices: 72245336--72245513 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
72245326 TGAATGATAC
* * * * * *
72245336 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
72245400 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
72245416 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
72245481 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
72245496 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
72245514 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:72247104 original size:42 final size:42
Alignment explanation
Indices: 72247048--72247150 Score: 145
Period size: 42 Copynumber: 2.5 Consensus size: 42
72247038 ATACCAATAG
* * *
72247048 CCCAGCTATGGTCTTACATGA-AGTATCATATTAATGGCATAT
1 CCCAGATATGGTCTTACA-CATAGTATCATATTAATGCCATAT
* *
72247090 CCCAGATATGGTCTTACACATAGTCTCATATTGATGCCATAT
1 CCCAGATATGGTCTTACACATAGTATCATATTAATGCCATAT
72247132 CCCAGATATGGTCTTACAC
1 CCCAGATATGGTCTTACAC
72247151 GTGGTCTTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
41 1 0.02
42 54 0.98
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACATAGTATCATATTAATGCCATAT
Found at i:72252619 original size:37 final size:37
Alignment explanation
Indices: 72252569--72252648 Score: 160
Period size: 37 Copynumber: 2.2 Consensus size: 37
72252559 TACCATTATG
72252569 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
1 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
72252606 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
1 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
72252643 AATGAA
1 AATGAA
72252649 TGAGTAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (37 bp):
AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
Found at i:72254737 original size:72 final size:71
Alignment explanation
Indices: 72254640--72254783 Score: 211
Period size: 72 Copynumber: 2.0 Consensus size: 71
72254630 TGCTAGGCCA
* *
72254640 TGTGAAAACCCTTGTAGGTTAGAAATAAGAAATAAATTTAATTAATTCTACACA-GG-TTAGGGA
1 TGTGAAAACCCATGTAGGTTAGAAATAAGAAATAAATTCAATTAATTCT-C-CATGGTTTAGGGA
72254703 CACAGGCG
64 CACAGGCG
*
72254711 TGTGAAAAACCCATGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTCCATGGTTTAGGGAC
1 TGTG-AAAACCCATGTAGGTTAGAAATAAGAAATAAATTCAATTAATTCTCCATGGTTTAGGGAC
*
72254776 ACGGGCG
65 ACAGGCG
72254783 T
1 T
72254784 ATCCCAAAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
70 2 0.03
71 7 0.11
72 57 0.86
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (71 bp):
TGTGAAAACCCATGTAGGTTAGAAATAAGAAATAAATTCAATTAATTCTCCATGGTTTAGGGACA
CAGGCG
Found at i:72261825 original size:40 final size:38
Alignment explanation
Indices: 72261781--72261920 Score: 140
Period size: 40 Copynumber: 3.6 Consensus size: 38
72261771 TCGCACGAAT
72261781 GCCTTCGGGACTTAAGTCCGGGATTAGTAACTTGCACAAA
1 GCCTTCGGGACTT-AGTCC-GGATTAGTAACTTGCACAAA
* * * *
72261821 GCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAAT
1 GCCTTCGGGACTTAGTCCGGA-TTAGTAACTTGCAC-AAA
* *
72261860 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA
1 GCCTTCGGGA-CTTAGTCCGGAT-TAGTAACTT-GCACAAA
*
72261900 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGTCCGGA
72261921 CATCATTCGA
Statistics
Matches: 81, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
37 3 0.04
38 18 0.22
39 12 0.15
40 41 0.51
41 7 0.09
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGACTTAGTCCGGATTAGTAACTTGCACAAA
Found at i:72261852 original size:79 final size:80
Alignment explanation
Indices: 72261769--72261920 Score: 231
Period size: 79 Copynumber: 1.9 Consensus size: 80
72261759 GGTTATAGCG
*
72261769 ACTCGCACGAATGCCTTCGGGA-CTTAAGTCCGGGAT-TAGTAACTT-GCACAAAGCCTTCGGG-
1 ACTCGCACGAATGCCTTC-GGATCCT-AGTCC-GGATATAGTAACTTAGCACAAAGCCTTCGGGA
72261830 CTTAGCCCGGATTTATTA
63 CTTAGCCCGGATTTATTA
*
72261848 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72261913 AGCCCGGA
66 AGCCCGGA
72261921 CATCATTCGA
Statistics
Matches: 67, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
77 4 0.06
78 16 0.24
79 36 0.54
80 11 0.16
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72269884 original size:39 final size:39
Alignment explanation
Indices: 72269753--72269943 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72269743 GGATATAACG
* ** **
72269753 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72269793 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72269833 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72269871 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72269911 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72269944 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72269888 original size:78 final size:80
Alignment explanation
Indices: 72269793--72269943 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72269783 GGTTATAGCG
* * * *
72269793 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72269855 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72269871 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72269936 AGCCCGGA
66 AGCCCGGA
72269944 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72279671 original size:40 final size:40
Alignment explanation
Indices: 72279626--72279793 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
72279616 CGGAATATAA
*
72279626 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
72279666 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
72279706 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
72279746 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
72279786 CCGGATAT
1 CCGGATAT
72279794 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72279776 original size:80 final size:80
Alignment explanation
Indices: 72279642--72279793 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
72279632 ATAAGCATGT
* *
72279642 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
72279707 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
72279722 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
72279785 CCCGGATAT
64 CCCGGATAT
72279794 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:72285421 original size:39 final size:40
Alignment explanation
Indices: 72285273--72285438 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
72285263 TCTTCAGAAT
* * *
72285273 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** *
72285312 TTAACCCGGATTTGGT-AGCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCA-CTAGCACAAATGCCTTCGGGTC
* *
72285352 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
72285391 TTATCCCGGATATAATCACTAGCATAAATGCCTT-GGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
72285430 TTAGCCCGG
1 TTAGCCCGG
72285439 GTATCATTCA
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
39 47 0.47
40 53 0.52
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:72292655 original size:40 final size:39
Alignment explanation
Indices: 72292598--72292789 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 39
72292588 TCGAATGATG
* *
72292598 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGT-ACCAAA
*
72292638 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTACCAAA
* * *
72292677 TCCAGACTAAGAT-TCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAG-TACCAAA
** **
72292717 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAG-TACCA-AA
* * * *
72292758 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGT
72292790 CGCTATATCC
Statistics
Matches: 129, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.28
40 83 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTACCAAA
Found at i:72292688 original size:39 final size:39
Alignment explanation
Indices: 72292598--72292748 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 39
72292588 TCGAATGATG
* * *
72292598 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGT-TCCAAA
72292638 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCAAA
* *
72292677 TCCAGACTAAGATTCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTT-CCAAA
**
72292717 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
72292749 CTATTATAAC
Statistics
Matches: 98, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 37 0.38
40 53 0.54
41 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCAAA
Found at i:72292813 original size:79 final size:77
Alignment explanation
Indices: 72292598--72292815 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 77
72292588 TCGAATGATG
72292598 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGT-GACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGTCG-CCATATCCGGA-TAAGATCCGAAGGCATT
72292662 TGTGCGAGTTCCAAA
63 TGTGCGAGTTCCAAA
* * * * *
72292677 TCCAGACTAAGAT-TCGAAGGCATTTGTGCGAGTTC-CCAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCGAG-TCGCCATATCC-GGATAAGAT-CCGAAGGCA
*
72292739 TTTGTGCGAGCTAT-TATAA
61 TTTGTGCGAG-T-TCCA-AA
* * *
72292758 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGTCGCTATATCCGGATAAGATCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTCGCCATATCCGGATAAGATCCGAAGG
72292816 TACGTGATTC
Statistics
Matches: 112, Mismatches: 15, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
78 1 0.01
79 65 0.58
80 43 0.38
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTCGCCATATCCGGATAAGATCCGAAGGCATTTGT
GCGAGTTCCAAA
Found at i:72292814 original size:119 final size:119
Alignment explanation
Indices: 72292598--72292815 Score: 257
Period size: 119 Copynumber: 1.8 Consensus size: 119
72292588 TCGAATGATG
*
72292598 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* *
72292663 GTGCGAGTTCCAAATCCAGACTAAGATTCGAAGGCATTTGTGCGAGTTCCCAAA
66 GAGCGAGTTCCAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
* ** * * *
72292717 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCT-ATTATAACCGGGCTATG-TCCCGAAGGCT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAG-TGACCATAACCGGACTAAGAT-CCGAAGGCA
* *
72292779 TTTGAGCGAG-TCGCTATATCCGGA-TAAGATCCGAAGG
63 TTTGAGCGAGTTC-C-AAATCCAGACTAAGATCCGAAGG
72292816 TACGTGATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
118 3 0.04
119 65 0.78
120 15 0.18
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAGCGAGTTCCAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:72299668 original size:40 final size:41
Alignment explanation
Indices: 72299611--72299759 Score: 191
Period size: 40 Copynumber: 3.7 Consensus size: 41
72299601 TCGAATGATG
* ** *
72299611 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTCCCAAA
72299651 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTCCCAAA
72299691 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTCCCAAA
**
72299731 TCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC
72299760 GAGCTATTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
39 1 0.01
40 89 0.91
41 8 0.08
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTCCCAAA
Found at i:72299788 original size:80 final size:80
Alignment explanation
Indices: 72299611--72299829 Score: 209
Period size: 80 Copynumber: 2.8 Consensus size: 80
72299601 TCGAATGATG
*
72299611 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
72299676 GTGCGAGTTCCCAAA
66 GTGCGAGCTACCAAA
* ** **
72299691 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTCCCAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
**
72299753 TTTGTGCGAGCTATTATAA
63 TTTGTGCGAGCTACCA-AA
* * * *
72299772 -CCGGGCTATGTCCCGAAGGCTTTTGAGC-GAGTCG-CTATATCCGGA-TAAGATCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAGT-GACCAAATCCGGACTAAGATCCGAAGG
72299830 TACGTGATTC
Statistics
Matches: 113, Mismatches: 18, Indels: 17
0.76 0.12 0.11
Matches are distributed among these distances:
79 13 0.12
80 91 0.81
81 9 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACCAAA
Found at i:72301798 original size:26 final size:25
Alignment explanation
Indices: 72301769--72301818 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
72301759 AGTGATCTAG
72301769 ATGAGCT-GTGGTTGCCAGTGGGCTTA
1 ATGAGCTAG-GGTTGCC-GTGGGCTTA
72301795 ATGAGCTAGGGTTGCCGTGGGCTT
1 ATGAGCTAGGGTTGCCGTGGGCTT
72301819 GGTGAATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
26 14 0.61
27 1 0.04
ACGTcount: A:0.14, C:0.16, G:0.40, T:0.30
Consensus pattern (25 bp):
ATGAGCTAGGGTTGCCGTGGGCTTA
Found at i:72304296 original size:26 final size:27
Alignment explanation
Indices: 72304267--72304319 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
72304257 TGGTGAGTTG
* *
72304267 TGCTCGCAGGTGTGGTTT-ATGAACTA
1 TGCTCGCAGATGTAGTTTGATGAACTA
* *
72304293 TGCTTGCAGATGTAGTTTGGTGAACTA
1 TGCTCGCAGATGTAGTTTGATGAACTA
72304320 AGTTCACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (27 bp):
TGCTCGCAGATGTAGTTTGATGAACTA
Found at i:72309581 original size:49 final size:49
Alignment explanation
Indices: 72309507--72309907 Score: 684
Period size: 49 Copynumber: 8.3 Consensus size: 49
72309497 CCCTTCAGGA
*
72309507 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72309554 CTTGTCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72309603 CTTGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72309652 CTTCTCACATATATA-A-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72309699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72309748 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72309797 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72309846 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72309895 CTTATCACATATA
1 CTTATCACATATA
72309908 CTATCAAGTA
Statistics
Matches: 336, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 54 0.16
48 3 0.01
49 279 0.83
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72309774 original size:145 final size:145
Alignment explanation
Indices: 72309507--72309907 Score: 676
Period size: 145 Copynumber: 2.8 Consensus size: 145
72309497 CCCTTCAGGA
* * * * *
72309507 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTAGGCCTTGTCACATATATATGC
1 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
72309572 ACTTTCACATTCATCACATCGGCCATTAGGTCTTGTCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
72309637 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
72309652 CTTCTCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72309717 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
*
72309782 CATTGGCCATTAGGC
131 CATCGGCCATTAGGC
*
72309797 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATA-A-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72309862 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
72309908 CTATCAAGTA
Statistics
Matches: 241, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
145 149 0.62
146 1 0.00
147 91 0.38
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:72313377 original size:25 final size:25
Alignment explanation
Indices: 72313340--72313390 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
72313330 GGAATTCGCA
72313340 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
*
72313365 CACACACATAGTGCTCTTAATCATT
1 CACACACACAGTGCTCTTAATCATT
72313390 C
1 C
72313391 GTTATTACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.27
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:72313611 original size:40 final size:40
Alignment explanation
Indices: 72313554--72313758 Score: 329
Period size: 40 Copynumber: 5.1 Consensus size: 40
72313544 CGAATACACG
* * * * *
72313554 TCACTAGCATGATTGCTCTTCGGGGCCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
72313594 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
*
72313634 TCACTAGCACGAATGCTCTTCGAGAATTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
72313674 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
* * *
72313714 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTATA
1 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
72313754 TCACT
1 TCACT
72313759 CTCAATTCTC
Statistics
Matches: 155, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 155 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
Found at i:72315244 original size:49 final size:49
Alignment explanation
Indices: 72315170--72315327 Score: 257
Period size: 49 Copynumber: 3.3 Consensus size: 49
72315160 CCCTTCGGGA
*
72315170 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
* ** *
72315217 CTTGTCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
72315266 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
72315315 CTTATCACATATA
1 CTTATCACATATA
72315328 CTATCAAGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 9 0.09
48 1 0.01
49 92 0.90
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:72318210 original size:12 final size:12
Alignment explanation
Indices: 72318193--72318217 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72318183 ATGTAAGTGA
72318193 TCTTGATGATTT
1 TCTTGATGATTT
72318205 TCTTGATGATTT
1 TCTTGATGATTT
72318217 T
1 T
72318218 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:72319180 original size:49 final size:49
Alignment explanation
Indices: 72318936--72319302 Score: 345
Period size: 49 Copynumber: 7.7 Consensus size: 49
72318926 TTTCTTGTGT
* * *
72318936 GCCAGTGTAAGA-CATGTCTGTGACAT-GCATCGGCCAC-ATTATGAGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGA-TA
* * *
72318982 GACAGTGTAAGACCATGTCTGGGACATGGCATC-GCGT--AAAGATGAGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA-ATGA-TA
* * * * *
72319029 GCCAATGCAAGA-CATGTCTGGAACAT-GCATCGGCATCGACAATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
* *
72319076 GCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGG-CTAAGAGT--TG-T-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGA-TAATGATA
* * * *
72319120 GCTAGTATAAGACCATGTCTGGGACATTGCATCGGCCTTGATAATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
* * * * *
72319169 GCTAGTATAAGACCTTGTCTGGGACATGGCATTGGCCTCGATGATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
* *
72319218 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
*
72319267 ACCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
72319303 AACTTATCCT
Statistics
Matches: 272, Mismatches: 33, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
44 10 0.04
45 20 0.07
46 41 0.15
47 69 0.25
48 8 0.03
49 124 0.46
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
Found at i:72319255 original size:98 final size:94
Alignment explanation
Indices: 72318935--72319298 Score: 359
Period size: 93 Copynumber: 3.9 Consensus size: 94
72318925 ATTTCTTGTG
* * * *
72318935 TGCCAGTGTAAGA-CATGTCTGTGACATGCATCGGCCAC-ATTATGAGT-GACAGTGTAAGACCA
1 TGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATAATGA-TAGCCAGTGTAAGACCA
* * *
72318997 TGTCTGGGACATGGCA-TCGCGTAAAGATGA
65 TGTCTGGGACATGGCATTGGCCT-GAGATGA
* * * * * *
72319027 GTGCCAATGCAAGA-CATGTCTGGAACATGCATCGGCATCGACAATGATAGCCAGTGTAAGA-CG
1 -TGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATAATGATAGCCAGTGTAAGACCA
* *
72319090 TGTCTGGGACAT-GCATCGG-CTAAGAGTTG-
65 TGTCTGGGACATGGCATTGGCCT--GAGATGA
* * * * * *
72319119 TGCTAGTATAAGACCATGTCTGGGACATTGCATCGGCCTTGATAATGATAGCTAGTATAAGACCT
1 TGCCAGTGTAAGACCATGTCTGGGACA-TGCATCGGCCTCGATAATGATAGCCAGTGTAAGACCA
72319184 TGTCTGGGACATGGCATTGGCCTCGATGATGA
65 TGTCTGGGACATGGCATTGGCCT-GA-GATGA
* * *
72319216 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGATAACCAGTGTAAGACC
1 T-GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGATAATGATAGCCAGTGTAAGACC
72319281 ATGTCTGGGACATGGCAT
64 ATGTCTGGGACATGGCAT
72319299 CGGCAACTTA
Statistics
Matches: 220, Mismatches: 38, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
91 9 0.04
92 16 0.07
93 81 0.37
94 29 0.13
95 8 0.04
96 5 0.02
97 2 0.01
98 70 0.32
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (94 bp):
TGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATAATGATAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATTGGCCTGAGATGA
Found at i:72322763 original size:29 final size:29
Alignment explanation
Indices: 72322714--72322782 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
72322704 CGAGCTGCAC
* *
72322714 CACGGCCGTGTTATGGTAGTGTGAAAGGA
1 CACGGGCGTGTTATGGCAGTGTGAAAGGA
*
72322743 CACGGGCGTGTTGTGGCAGTGTGAAAGGA
1 CACGGGCGTGTTATGGCAGTGTGAAAGGA
72322772 CACGGGCGTGT
1 CACGGGCGTGT
72322783 GTCCAGGCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.20, C:0.16, G:0.42, T:0.22
Consensus pattern (29 bp):
CACGGGCGTGTTATGGCAGTGTGAAAGGA
Found at i:72325721 original size:15 final size:15
Alignment explanation
Indices: 72325701--72325733 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72325691 AAACATACTT
72325701 TACAAAATGAGCTTA
1 TACAAAATGAGCTTA
72325716 TACAAAATGAGCTTA
1 TACAAAATGAGCTTA
72325731 TAC
1 TAC
72325734 CGTGATCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.27
Consensus pattern (15 bp):
TACAAAATGAGCTTA
Found at i:72328488 original size:34 final size:35
Alignment explanation
Indices: 72328434--72328538 Score: 185
Period size: 34 Copynumber: 3.0 Consensus size: 35
72328424 CACTTGCCTC
72328434 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
72328469 TTCCCACTCT-CCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
72328503 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
72328538 T
1 T
72328539 CACACACCCC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 33 0.50
35 33 0.50
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:72328981 original size:33 final size:33
Alignment explanation
Indices: 72328939--72329012 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
72328929 AGAGGGGAAG
*
72328939 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
72328971 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
72329005 -AAAAAAAA
1 CAAAAAAAA
72329013 CCAAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 8 0.22
33 21 0.57
34 8 0.22
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:72329301 original size:11 final size:11
Alignment explanation
Indices: 72329272--72329321 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
72329262 CGACCGGATT
* *
72329272 TCCCTTCCCCC
1 TCCCTTCTCTC
72329283 TCCCTTCTCTC
1 TCCCTTCTCTC
72329294 TCCCTTCTCTC
1 TCCCTTCTCTC
72329305 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
72329316 TTCCTT
1 TCCCTT
72329322 TTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:72329872 original size:22 final size:23
Alignment explanation
Indices: 72329840--72329891 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
72329830 ATTTCTAATA
72329840 TGTATATATATATATATATTATG
1 TGTATATATATATATATATTATG
72329863 TGTAT-TATATATATATATTATG
1 TGTATATATATATATATATTATG
*
72329885 TATATAT
1 TGTATAT
72329892 GCCATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (23 bp):
TGTATATATATATATATATTATG
Found at i:72329907 original size:2 final size:2
Alignment explanation
Indices: 72329837--72329891 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
72329827 ATCATTTCTA
* * *
72329837 AT AT GT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
72329877 AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT
72329892 GCCATTAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:72341998 original size:40 final size:40
Alignment explanation
Indices: 72341931--72342082 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72341921 AAATTGAATG
* *
72341931 ATATCCGGGCTAAG-CCCTGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCC-GAAGGCAATTGTGCTGGAAATT
* * ****
72341971 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
72342011 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
72342051 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72342083 ACATGCTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.03
40 84 0.91
41 5 0.05
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:72342096 original size:40 final size:39
Alignment explanation
Indices: 72341969--72342098 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
72341959 ATGCTGGAAA
* * *
72341969 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
72342010 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
72342048 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
72342089 TTATATCCGG
1 TTATATCCGG
72342099 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:72352064 original size:10 final size:10
Alignment explanation
Indices: 72352051--72352080 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
72352041 CTTTTGTTCT
*
72352051 TTTATCTTTC
1 TTTATTTTTC
72352061 TTTATTTTTC
1 TTTATTTTTC
72352071 TTTATTTTTC
1 TTTATTTTTC
72352081 ATTCTCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTTC
Found at i:72352657 original size:12 final size:13
Alignment explanation
Indices: 72352635--72352660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72352625 CATGCTGCCG
72352635 TTAGTTTTTTTTT
1 TTAGTTTTTTTTT
72352648 TTAGTTTTTTTTT
1 TTAGTTTTTTTTT
72352661 AATATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (13 bp):
TTAGTTTTTTTTT
Found at i:72354416 original size:30 final size:30
Alignment explanation
Indices: 72354348--72354416 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
72354338 TTGGTCATGA
* * *
72354348 GGTGTGAACAAGCTAAGTTGAATGGTCATT
1 GGTGTGAACAAGCTAAATCGAATAGTCATT
*
72354378 GAGTGTGAACAAG-TAAAATCGAATAGTCTTT
1 G-GTGTGAACAAGCT-AAATCGAATAGTCATT
72354409 GGTGTGAA
1 GGTGTGAA
72354417 AACCCTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 9 0.27
31 24 0.73
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (30 bp):
GGTGTGAACAAGCTAAATCGAATAGTCATT
Found at i:72367096 original size:38 final size:38
Alignment explanation
Indices: 72367048--72367144 Score: 113
Period size: 38 Copynumber: 2.5 Consensus size: 38
72367038 TAAATTAGTT
* **
72367048 TGAGTCTTAATTATGTCATAATTTGAACACCATTAATA
1 TGAGTTTTAATTATGTCATAAACTGAACACCATTAATA
* *
72367086 TGAGTTTTAATTATGTCATAAACTGAACATCTTTAATA
1 TGAGTTTTAATTATGTCATAAACTGAACACCATTAATA
* * *
72367124 AGGGATTTTAATTATGCCATA
1 TGAG-TTTTAATTATGTCATA
72367145 GTTTAGGACA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
38 35 0.70
39 15 0.30
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (38 bp):
TGAGTTTTAATTATGTCATAAACTGAACACCATTAATA
Found at i:72368695 original size:42 final size:42
Alignment explanation
Indices: 72368638--72368841 Score: 246
Period size: 42 Copynumber: 4.8 Consensus size: 42
72368628 AGGGTTACTA
* * * *
72368638 AGATTACATGTAAGACCATATCTAGGATATGGCATCTATATA
1 AGATTTCATGTAAGACCATATCTGGGATATGGCATCGATATG
* *
72368680 AGATTTCATGTAAGACCGTATCCGGGATATGGCATCGATATG
1 AGATTTCATGTAAGACCATATCTGGGATATGGCATCGATATG
* * *
72368722 AGATTTCGTGTAAGACCATATCTGGGATATGTCATCAATATG
1 AGATTTCATGTAAGACCATATCTGGGATATGGCATCGATATG
* * * *
72368764 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATACG
1 AGATTTCATGTAAGACCATATCTGGGATA-TGGCATCGATATG
* * * *
72368807 AGATTACATGTAAAACCAAATCTAGGATATGGCAT
1 AGATTTCATGTAAGACCATATCTGGGATATGGCAT
72368842 TGGTACTGTA
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 106 0.77
43 32 0.23
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
AGATTTCATGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:72368779 original size:84 final size:85
Alignment explanation
Indices: 72368638--72368841 Score: 275
Period size: 84 Copynumber: 2.4 Consensus size: 85
72368628 AGGGTTACTA
* * *
72368638 AGATTACATGTAAGACCATATCTAGGATATGGCATCTATATAAGATTTCATGTAAGACCGTATCC
1 AGATTACATGTAAGACCATATCTAGGATATGGCATCAATATAAGATTTCATGTAAGACCATAGCC
*
72368703 GGGATA-TGGCATCGATATG
66 GGGATATTGGCATCGATACG
* * * * * * *
72368722 AGATTTCGTGTAAGACCATATCTGGGATATGTCATCAATATGAGATTTCGTGTAAGACCATAGCT
1 AGATTACATGTAAGACCATATCTAGGATATGGCATCAATATAAGATTTCATGTAAGACCATAGCC
*
72368787 GGGCTATTGGCATCGATACG
66 GGGATATTGGCATCGATACG
* *
72368807 AGATTACATGTAAAACCAAATCTAGGATATGGCAT
1 AGATTACATGTAAGACCATATCTAGGATATGGCAT
72368842 TGGTACTGTA
Statistics
Matches: 101, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 60 0.59
85 41 0.41
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (85 bp):
AGATTACATGTAAGACCATATCTAGGATATGGCATCAATATAAGATTTCATGTAAGACCATAGCC
GGGATATTGGCATCGATACG
Found at i:72370018 original size:16 final size:16
Alignment explanation
Indices: 72369997--72370027 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72369987 TTTGAAAATG
*
72369997 TGATTTTTGGCATGAA
1 TGATTTATGGCATGAA
72370013 TGATTTATGGCATGA
1 TGATTTATGGCATGA
72370028 TAAAGGTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.42
Consensus pattern (16 bp):
TGATTTATGGCATGAA
Found at i:72371843 original size:110 final size:110
Alignment explanation
Indices: 72371646--72371871 Score: 301
Period size: 110 Copynumber: 2.1 Consensus size: 110
72371636 AGATCGCATC
* *
72371646 AGACCACGTGGTAGAGACCCATGACATTATATGACAATGAGGATATTCATGGTGTAGCCTACAGT
1 AGACCACATGGTAGAGACCCATGACATTATATGACAATGAGGATACTCATGGTGTAGCCTACAGT
* * * * *
72371711 AAGATGTAAATCAGACTAGTAGATCACCATATTAAGATATGTGTA
66 AAGATGTAAACCAGACTAGTAGATCACAACATGAAGATATGTATA
* * * * * *
72371756 GGACCACATGGTATAGACCCATGGCATTATATGACAATGAGGATACTCATGTTGTATCCTCCAGT
1 AGACCACATGGTAGAGACCCATGACATTATATGACAATGAGGATACTCATGGTGTAGCCTACAGT
* *
72371821 GAGATGTAAACC-GAACTGGTAGATCACAACATGAAGATATGTATA
66 AAGATGTAAACCAG-ACTAGTAGATCACAACATGAAGATATGTATA
72371866 AGACCA
1 AGACCA
72371872 TGTGGGAAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
109 1 0.01
110 98 0.99
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (110 bp):
AGACCACATGGTAGAGACCCATGACATTATATGACAATGAGGATACTCATGGTGTAGCCTACAGT
AAGATGTAAACCAGACTAGTAGATCACAACATGAAGATATGTATA
Found at i:72374921 original size:43 final size:43
Alignment explanation
Indices: 72374868--72374959 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
72374858 TTTTACACGA
* * *
72374868 AATCATAATACGATGCCAATGTCCCAGACATGGTCTTAAATGT
1 AATCACAATACAATGACAATGTCCCAGACATGGTCTTAAATGT
* * * *
72374911 AGTCACAATACAATTACAATGTGCCAGACATGGTCTTACATGT
1 AATCACAATACAATGACAATGTCCCAGACATGGTCTTAAATGT
72374954 AATCAC
1 AATCAC
72374960 CTCTCGATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (43 bp):
AATCACAATACAATGACAATGTCCCAGACATGGTCTTAAATGT
Found at i:72378075 original size:14 final size:16
Alignment explanation
Indices: 72378051--72378083 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
72378041 ATTTTCAGTG
72378051 TTTATTATGTGTGA-A
1 TTTATTATGTGTGACA
72378066 TTTA-TATGTGTGACA
1 TTTATTATGTGTGACA
72378081 TTT
1 TTT
72378084 TCGTGACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGACA
Found at i:72379403 original size:43 final size:43
Alignment explanation
Indices: 72379341--72379425 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
72379331 ATGTGATTCT
* *
72379341 GATATGTGTTTACGAGTAAGACCTTGTCTGGGACAG-TGGCATC
1 GATATGTGATTACGAGTAAGACCATGTCTGGGAC-GTTGGCATC
72379384 GATATGTGATTAC-ATGTAAGACCATGTCTGGGACGTTGGCAT
1 GATATGTGATTACGA-GTAAGACCATGTCTGGGACGTTGGCAT
72379426 TGTATGATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 2 0.05
43 36 0.95
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACGAGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:72382875 original size:28 final size:28
Alignment explanation
Indices: 72382830--72382884 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
72382820 GGGCTAGGAC
* *
72382830 ACATGTCATGGCCGTGTGAGGGACACGG
1 ACATGTCATGCCCATGTGAGGGACACGG
72382858 ACATGTCATGCCCATGTGAGGGACACG
1 ACATGTCATGCCCATGTGAGGGACACG
72382885 AGCCATAGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (28 bp):
ACATGTCATGCCCATGTGAGGGACACGG
Found at i:72392047 original size:92 final size:92
Alignment explanation
Indices: 72391936--72392106 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
72391926 CGCCCATAAG
* *
72391936 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72392001 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
*
72392028 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72392093 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72392107 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:72392103 original size:46 final size:46
Alignment explanation
Indices: 72391929--72392103 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
72391919 TGTAACCCGC
* * *
72391929 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72391975 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
72392021 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72392067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72392104 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 97 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72392122 original size:46 final size:46
Alignment explanation
Indices: 72391937--72392122 Score: 145
Period size: 46 Copynumber: 4.0 Consensus size: 46
72391927 GCCCATAAGC
* ** * *
72391937 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* *
72391983 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
72392029 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
72392075 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
72392121 GA
1 GA
72392123 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 28
0.73 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 92 0.81
47 1 0.01
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:72394680 original size:27 final size:27
Alignment explanation
Indices: 72394336--72394714 Score: 137
Period size: 27 Copynumber: 14.0 Consensus size: 27
72394326 ATACTTTAGT
* ** *
72394336 TTACCAAAGTACCCCCAATTTATAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
* *
72394363 TTACCCAAATA-TCCTCGATTTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
* *
72394390 TTACTAAAATACCCCTTGATTTATAAAA
1 TTACCAAAATACCCC-TGATTTGTAAAA
** *
72394418 TTACTGAAATA-CCCTCGACTTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
* * *
72394445 TTACCAAAGTA-CCCTCGATTTATAGAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
***** * * * *
72394472 TTACTGTTTTACTCTTGATTTATAGAA
1 TTACCAAAATACCCCTGATTTGTAAAA
** *** * **
72394499 TTATTATTTTACCCTTGATTTACAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
* **** *
72394526 TTAGCGTTTTA-CCCTCGA-TTGTGAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
** ** *
72394552 TTACTGAAATACCCCT-ATAGGGTAGAA
1 TTACCAAAATACCCCTGAT-TTGTAAAA
72394579 TTACCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCCTGA-TTTGTAAAA
** * *
72394606 TTACCAAAATACCATTGGTTTGTGAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
* *
72394633 TTACCGAAATA-CCCTCAATTTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
**
72394660 TTACCAAAATACCCCTGATTTACAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
* *
72394687 TTA-CAGAAATACCCTTGACTTTTTAAAA
1 TTACCA-AAATACCCCTGA-TTTGTAAAA
72394715 ATTATAGAAA
Statistics
Matches: 268, Mismatches: 69, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
25 1 0.00
26 21 0.08
27 209 0.78
28 36 0.13
29 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TTACCAAAATACCCCTGATTTGTAAAA
Found at i:72394687 original size:81 final size:81
Alignment explanation
Indices: 72394544--72394699 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 81
72394534 TTACCCTCGA
* * * **
72394544 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA
72394609 CCA-AAATACCATTGGT
66 -CAGAAATACCATTGGT
**
72394625 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCT-GATTTACAAAAT
1 TTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACCAAAATACCCCTAG-TTTACAAAAT
72394688 TACAGAAATACC
64 TACAGAAATACC
72394700 CTTGACTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 3 0.05
81 59 0.91
82 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA
CAGAAATACCATTGGT
Found at i:72394688 original size:54 final size:54
Alignment explanation
Indices: 72394336--72394701 Score: 254
Period size: 54 Copynumber: 6.8 Consensus size: 54
72394326 ATACTTTAGT
* ** * *
72394336 TTACCAAAGTACCCCCAATTTATAAAATTACCCAAATATCCTCGATTTGTAAAA
1 TTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
* * *
72394390 TTACTAAAATACCCCTTGATTTATAAAATTACTGAAATACCCTCGACTTGTAAAA
1 TTACCAAAATACCCC-TGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
* * * *** * * * *
72394445 TTACCAAAGTA-CCCTCGATTTATAGAATTACTGTTTTACTCTTGATTTATAGAA
1 TTACCAAAATACCCCT-GATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
** *** * * * *** *
72394499 TTATTATTTTACCCTTGATTTACAAAATTAGCGTTTTACCCTCGA-TTGTGAAA
1 TTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
** *** * * *
72394552 TTACTGAAATACCCCT-ATAGGGTAGAATTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCCTGAT-TTATAAAATTACCGAAATACCCTCGA-TTTGTAAAA
** * * * *
72394606 TTACCAAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAA
1 TTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
* *
72394660 TTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 TTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCT
72394702 TGACTTTTTA
Statistics
Matches: 234, Mismatches: 70, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
52 4 0.02
53 28 0.12
54 154 0.66
55 48 0.21
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAA
Found at i:72394752 original size:27 final size:27
Alignment explanation
Indices: 72394577--72394785 Score: 145
Period size: 27 Copynumber: 7.7 Consensus size: 27
72394567 TATAGGGTAG
* *
72394577 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTATAA
* * * *
72394604 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTATAA
* * * *
72394631 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTATAA
* *
72394658 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTATAA
* *
72394685 AATTA-CAGAAATACCCTTGACTTTTTAAA
1 AATTACCA-AAATACCCTT-AGTTTAT-AA
* * *
72394714 AATTA-TAGAAATACCATTAGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTATAA
* * * *
72394741 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTATAA
* *
72394768 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
72394786 GTAGGATGAA
Statistics
Matches: 143, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.01
27 114 0.80
28 9 0.06
29 18 0.13
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTATAA
Found at i:72394847 original size:27 final size:27
Alignment explanation
Indices: 72394804--72394877 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
72394794 AAATCACTAC
*
72394804 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
72394831 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
72394858 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
72394878 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:72394881 original size:27 final size:27
Alignment explanation
Indices: 72394817--72394881 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
72394807 ACCCCTAATA
*
72394817 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
72394844 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
72394871 GGTAAAATGAC
1 GGTAAAATGAC
72394882 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:72395534 original size:25 final size:25
Alignment explanation
Indices: 72395505--72395552 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
72395495 TTATAATGTG
72395505 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTTTGCCCCTAGGTA
*
72395530 AAAATGATTGTTTTGCCCCTAGG
1 AAAATGACTGTTTTGCCCCTAGG
72395553 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
AAAATGACTGTTTTGCCCCTAGGTA
Found at i:72395620 original size:20 final size:20
Alignment explanation
Indices: 72395595--72395650 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
72395585 TATACATGAT
*
72395595 ATGATATACACATGATATGC
1 ATGATATGCACATGATATGC
*
72395615 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGC
*
72395635 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
72395651 GAATTCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (20 bp):
ATGATATGCACATGATATGC
Found at i:72395633 original size:11 final size:11
Alignment explanation
Indices: 72395595--72395650 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72395585 TATACATGAT
*
72395595 ATGATATACAC
1 ATGATATGCAC
72395606 ATGATATG--C
1 ATGATATGCAC
72395615 ATGATATGCAC
1 ATGATATGCAC
*
72395626 ATGATATG--T
1 ATGATATGCAC
*
72395635 ATGAAATGCAC
1 ATGATATGCAC
72395646 ATGAT
1 ATGAT
72395651 GAATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72395638 original size:9 final size:9
Alignment explanation
Indices: 72395581--72395644 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
72395571 TACGTGGGGT
*
72395581 ATGATATAC
1 ATGATATGC
72395590 ATGATATG-
1 ATGATATGC
**
72395598 AT-ATACAC
1 ATGATATGC
72395606 ATGATATGC
1 ATGATATGC
72395615 ATGATATGCAC
1 ATGATATG--C
*
72395626 ATGATATGT
1 ATGATATGC
*
72395635 ATGAAATGC
1 ATGATATGC
72395644 A
1 A
72395645 CATGATGAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
7 3 0.07
8 4 0.09
9 27 0.63
11 9 0.21
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (9 bp):
ATGATATGC
Found at i:72395778 original size:52 final size:51
Alignment explanation
Indices: 72395700--72395822 Score: 230
Period size: 52 Copynumber: 2.4 Consensus size: 51
72395690 GAGGAAGTGC
72395700 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
72395752 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
72395803 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72395823 ATTAAAGAGG
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
50 10 0.14
51 25 0.35
52 36 0.51
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:72395797 original size:25 final size:26
Alignment explanation
Indices: 72395700--72395822 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
72395690 GAGGAAGTGC
**
72395700 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72395726 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
72395752 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72395778 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72395803 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72395823 ATTAAAGAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.36
26 58 0.64
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:72396038 original size:42 final size:42
Alignment explanation
Indices: 72395972--72396054 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
72395962 TCCCCAGATG
* *
72395972 GGCTTGCATACATTTATTGGTATTTCATGTGATATTGAAATA
1 GGCTTGCATACATTCATTGATATTTCATGTGATATTGAAATA
*
72396014 GGCTTGCATACATTCATTGATATTTCATGTGTTATTGAAAT
1 GGCTTGCATACATTCATTGATATTTCATGTGATATTGAAAT
72396055 GGGCCTATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (42 bp):
GGCTTGCATACATTCATTGATATTTCATGTGATATTGAAATA
Found at i:72397733 original size:93 final size:93
Alignment explanation
Indices: 72397622--72397791 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
72397612 GCCCCTAAGT
* * * * *
72397622 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCGTCCATAAATGATCTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72397687 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
72397715 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72397780 CGAGTTCGGATG
66 CGAGTTCGGATG
72397792 TTCAACCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72397782 original size:46 final size:46
Alignment explanation
Indices: 72397617--72397789 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
72397607 AACCCGCCCC
* * * * *
72397617 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCGTCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * * *
72397663 TAAATGATCTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* *
72397711 TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
72397756 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72397790 TGTTCAACCA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.56
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:72401424 original size:40 final size:40
Alignment explanation
Indices: 72401354--72401561 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
72401344 CGGGATTTAA
** * *
72401354 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
72401393 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72401433 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72401473 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72401513 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
72401554 CCGGATAT
1 CCGGATAT
72401562 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72409561 original size:40 final size:40
Alignment explanation
Indices: 72409491--72409698 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
72409481 CGGGATTTAA
** * *
72409491 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
72409530 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72409570 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72409610 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72409650 CCGAATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
72409691 CCGGATAT
1 CCGGATAT
72409699 CATTCGAATA
Statistics
Matches: 136, Mismatches: 29, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
39 15 0.11
40 94 0.69
41 27 0.20
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72413848 original size:40 final size:39
Alignment explanation
Indices: 72413774--72413998 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 39
72413764 AACCCAAGTA
* * *
72413774 CCTTTGGGATTTAG-CCGGATATAGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
72413813 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
72413853 CCTTCGGGACTTAGCCC-GAGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGC-ACTA---GCACAAATG
* *
72413896 CCTTCGGGACATCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
72413936 CCTTCGGGTCTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
72413976 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72413999 CATCGAATAA
Statistics
Matches: 163, Mismatches: 13, Indels: 19
0.84 0.07 0.10
Matches are distributed among these distances:
39 14 0.09
40 111 0.68
41 2 0.01
43 33 0.20
44 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:72413895 original size:83 final size:83
Alignment explanation
Indices: 72413774--72413998 Score: 313
Period size: 83 Copynumber: 2.8 Consensus size: 83
72413764 AACCCAAGTA
* * * *
72413774 CCTTTGGGATTTAGCCGGA-TATAGCAACT--T-GCACAAATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72413835 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* *
72413853 CCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCGGGACATCGCCCGGATA
1 CCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72413918 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* *
72413936 CCTTCGGGTCTTAGCCCG-GATATAG-GA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGAG-TATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
72413997 AT
65 AT
72413999 CATCGAATAA
Statistics
Matches: 131, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.12
80 44 0.34
82 3 0.02
83 68 0.52
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGAGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:72421984 original size:93 final size:93
Alignment explanation
Indices: 72421855--72422026 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
72421845 CGCCCATAAG
* * *
72421855 CGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72421920 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
72421948 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72422013 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72422027 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72422023 original size:46 final size:46
Alignment explanation
Indices: 72421848--72422023 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72421838 TGTAACCCGC
* * * *
72421848 CCATAAGCGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
72421894 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72421944 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72421987 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72422024 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72422042 original size:46 final size:46
Alignment explanation
Indices: 72421897--72422035 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
72421887 TTCGCATCCA
*
72421897 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
72421945 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
72421990 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
72422036 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:72424577 original size:40 final size:40
Alignment explanation
Indices: 72424517--72424604 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
72424507 ATATATTCAT
** *
72424517 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGC
*
72424557 CCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGC
72424597 CCGGATAT
1 CCGGATAT
72424605 CATCCGAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:72437658 original size:93 final size:93
Alignment explanation
Indices: 72437547--72437719 Score: 247
Period size: 93 Copynumber: 1.9 Consensus size: 93
72437537 CGCCCATAAG
* * *** * **
72437547 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAATTGAACTTGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCAGACCTTCGCATCCATAAGTGAACTCCGACTCAACTCA
*
72437612 TCGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
72437640 TGAACTCAGACTCAACTCAACGAGTTCAGACCTTCGCATCCATAAGTGAACTCCGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCAGACCTTCGCATCCATAAGTGAACTCCGACTCAACTCA
*
72437705 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
72437720 CAAATATCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCAGACCTTCGCATCCATAAGTGAACTCCGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:72437698 original size:46 final size:46
Alignment explanation
Indices: 72437540--72437715 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
72437530 TGTAACCCGC
***
72437540 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
* * * **
72437586 CCATAATTGAACTTGGACTCAACTCATCGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CCT--TCGCAT
* * *
72437636 CTC-T---TGAACTCAGACTCAACTCAACGAGTTCAGACCTTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
* *
72437679 CCATAAGTGAACTCCGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72437716 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
45 3 0.03
46 61 0.59
47 25 0.24
48 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
Found at i:72447629 original size:16 final size:16
Alignment explanation
Indices: 72447608--72447648 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
72447598 GTTTTTGCTA
72447608 GAAGAAAAAGAAAAAG
1 GAAGAAAAAGAAAAAG
*
72447624 GAAG--AAAGAAAATG
1 GAAGAAAAAGAAAAAG
*
72447638 GAGGAAAAAGA
1 GAAGAAAAAGA
72447649 GAGGAAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (16 bp):
GAAGAAAAAGAAAAAG
Found at i:72454688 original size:13 final size:13
Alignment explanation
Indices: 72454653--72454693 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 13
72454643 TTATGGCCTT
72454653 TTTTTATATTATATA
1 TTTTT-TATTAT-TA
72454668 TATTTTTATTATTA
1 T-TTTTTATTATTA
72454682 TTTTTTATTATT
1 TTTTTTATTATT
72454694 TACCCGTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 11 0.44
14 3 0.12
15 7 0.28
16 4 0.16
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTTATTATTA
Found at i:72461545 original size:40 final size:39
Alignment explanation
Indices: 72461500--72461707 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
72461490 CGGAATACAA
*
72461500 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72461540 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72461580 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
72461620 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
72461660 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72461700 CCGGATAT
1 CCGGATAT
72461708 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72461640 original size:80 final size:80
Alignment explanation
Indices: 72461500--72461706 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
72461490 CGGAATACAA
* * *
72461500 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
72461564 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
72461580 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
72461644 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
72461660 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
72461707 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:72470746 original size:40 final size:40
Alignment explanation
Indices: 72470668--72470891 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
72470658 ACCCAAGTAT
* *
72470668 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * **
72470707 CTTTGGGTCTTAGCCTGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72470747 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72470787 CTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
72470830 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72470870 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72470892 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 11 0.07
40 113 0.71
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72470854 original size:83 final size:80
Alignment explanation
Indices: 72470668--72470891 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
72470658 ACCCAAGTAT
* * * *
72470668 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTTGGGTCTTAGCCTGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAG
**
72470731 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
* *
72470747 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
72470811 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
72470830 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATAT
72470892 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
81 1 0.01
83 65 0.52
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:72474429 original size:40 final size:39
Alignment explanation
Indices: 72474374--72474581 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
72474364 TGAATGATAC
* * * *
72474374 CCGGGATAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
72474414 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
72474454 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
72474494 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
72474534 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
72474574 CC-GGCTAA
1 CCGGGCTAA
72474582 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 137 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:72482253 original size:40 final size:40
Alignment explanation
Indices: 72482175--72482397 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
72482165 ACCCAAGTAT
* *
72482175 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
72482214 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72482254 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72482294 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
72482337 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72482377 CTTC-GGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72482398 CATCCGAATA
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 29 0.18
40 99 0.60
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72482371 original size:83 final size:80
Alignment explanation
Indices: 72482175--72482397 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
72482165 ACCCAAGTAT
* * * *
72482175 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
72482239 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
72482254 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
72482318 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
72482337 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC-GGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72482398 CATCCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
82 16 0.12
83 50 0.39
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:72485376 original size:49 final size:49
Alignment explanation
Indices: 72485267--72485580 Score: 160
Period size: 48 Copynumber: 6.6 Consensus size: 49
72485257 TTAAGATACT
72485267 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGTGAGGTC
1 GATGCCATGTCCCAGACA-GGTCTTACACTGGCTTTCATATAGTGAGGTC
* * * *
72485317 AATGCCATGTCCCAGACAAGTCTTTCACTGGCTCTT-ATCTA-TCG-GTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCT-TTCATATAGT-GAG-GTC
* * *** * *
72485366 GATGCAATGTCCCAGACAGGTCTTACACTGACACCCA-ACA---AGCT-
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGTGAGGTC
** * * * * *
72485410 GACACCATGTCCCAGACAAGCCTTACACTAGCTTGTC-TAT-CTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTT-TCATATAGT-GAGGTC
* * * * *
72485459 GATG-CATGTCCCAAACATGTCTTACACTGG-TTT-AAATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATA-GT-GAGGTC
* * * *
72485507 GATG-CATGTCCCAGACATGTCTTACATTGGCTCTCATAT--TGCGG-C
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGTGAGGTC
* *
72485552 TGATG-CATGTGCCAGACATGTCTTACACT
1 -GATGCCATGTCCCAGACAGGTCTTACACT
72485581 AGCACACATA
Statistics
Matches: 204, Mismatches: 42, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
44 25 0.12
45 4 0.02
46 33 0.16
47 3 0.01
48 64 0.31
49 53 0.26
50 22 0.11
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGTGAGGTC
Found at i:72485471 original size:48 final size:48
Alignment explanation
Indices: 72485415--72485583 Score: 182
Period size: 48 Copynumber: 3.6 Consensus size: 48
72485405 AAGCTGACAC
* * *
72485415 CATGTCCCAGACAAGCCTTACACTAGCTTGTCTATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCGAGGCCGATG
* * * **
72485463 CATGTCCCAAACATGTCTTACACTGGTTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCGAGGCCGATG
* * * * *
72485511 CATGTCCCAGACATGTCTTACATTGGC-TCTCATAT-T-GCGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATC-TATCTCGAGGCCGATG
*
72485557 CATGTGCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
72485584 ACACATATCT
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
46 32 0.32
47 2 0.02
48 67 0.66
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCGAGGCCGATG
Found at i:72498959 original size:47 final size:47
Alignment explanation
Indices: 72498906--72499220 Score: 229
Period size: 46 Copynumber: 6.7 Consensus size: 47
72498896 TAAGGTGCCA
* * * *
72498906 ATGCCATGTCGCAGACATAGTTTTACACTGGCTCATATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
* * * * **
72498953 ATGCCATGCCCCAGACATGGTTTTACACTGACTTCATCT-TGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATATCTCAAGCCG
* * ** *
72499000 ATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGCCG
* * * *
72499046 ATG-CATATCCCAGAAAT-GTCTTACACTAGCAC-TCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA-GCCG
* * *
72499092 ATGCCATGTCCCAGACATGGTCTTACACTAGCAC-TAGTCTCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATA-TCTC-AAGCCG
* * * *
72499140 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGT--GGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGG--CTCAT-ATCTCAAGCCG
*
72499188 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
72499221 CAATAACCCA
Statistics
Matches: 217, Mismatches: 38, Indels: 29
0.76 0.13 0.10
Matches are distributed among these distances:
44 7 0.03
45 13 0.06
46 64 0.29
47 62 0.29
48 64 0.29
49 1 0.00
50 2 0.01
51 3 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
Found at i:72499046 original size:46 final size:46
Alignment explanation
Indices: 72498951--72499217 Score: 231
Period size: 46 Copynumber: 5.7 Consensus size: 46
72498941 TATCTCAAGT
* * *
72498951 CGATGCCATGCCCCAGACATGGTTTTACACT-G-ACTTCATCTTGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCATCTCG-AGGC
* * * *
72498998 CGATGCATGTCCTAGACATGTCTTACACTGGC-TTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAGGC
* * * *
72499044 CGATGCATATCCCAGAAATGTCTTACACTAGCACTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGC
*
72499090 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACT-AGTCTCGATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCA-TCTCGAGGC
* * * * *
72499138 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGC
*
72499186 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
72499218 TCACAATAAC
Statistics
Matches: 184, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
45 11 0.06
46 73 0.40
47 32 0.17
48 66 0.36
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGC
Found at i:72512376 original size:18 final size:18
Alignment explanation
Indices: 72512349--72512383 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72512339 TGATTGTTAA
72512349 AATAAATAATAAATATTT
1 AATAAATAATAAATATTT
*
72512367 AATAAGTAATAAATATT
1 AATAAATAATAAATATT
72512384 ATTATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AATAAATAATAAATATTT
Found at i:72512394 original size:18 final size:17
Alignment explanation
Indices: 72512353--72512395 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
72512343 TGTTAAAATA
72512353 AATAATAAATATTTAAT
1 AATAATAAATATTTAAT
*
72512370 AAGTAATAAATATTATTAT
1 AA-TAATAAATATT-TAAT
72512389 AATAATA
1 AATAATA
72512396 TATTTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 5 0.22
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AATAATAAATATTTAAT
Found at i:72515246 original size:16 final size:16
Alignment explanation
Indices: 72515221--72515256 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
72515211 TATCCGTTAG
*
72515221 AATAAAAAAATATTAAA
1 AATAAAAAAAT-TCAAA
72515238 AATAAAAAAATTCAAA
1 AATAAAAAAATTCAAA
72515254 AAT
1 AAT
72515257 TTCAGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAAAAATTCAAA
Found at i:72516465 original size:19 final size:21
Alignment explanation
Indices: 72516425--72516477 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
72516415 TTTCGAAAGC
* *
72516425 AATACTTTTAAT-TTATACCA
1 AATATTTTTAATGTCATACCA
72516445 AA-ATTTTTAATGTCATA-CA
1 AATATTTTTAATGTCATACCA
*
72516464 AATTTTTTTAATGT
1 AATATTTTTAATGT
72516478 ATTATCAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (21 bp):
AATATTTTTAATGTCATACCA
Found at i:72516490 original size:21 final size:20
Alignment explanation
Indices: 72516448--72516494 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
72516438 TATACCAAAA
72516448 TTTTTAATGTCATACAAATT
1 TTTTTAATGTCATACAAATT
72516468 TTTTTAATGT-ATTATC-AATT
1 TTTTTAATGTCA-TA-CAAATT
72516488 TTTTTAA
1 TTTTTAA
72516495 ACAATACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTTTAATGTCATACAAATT
Found at i:72516749 original size:21 final size:19
Alignment explanation
Indices: 72516715--72516753 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
72516705 AAATATTAAT
*
72516715 ATCACATTAAAATTATTGGC
1 ATCACATAAAAATT-TTGGC
72516735 ATCATCATAAAAATTTTGG
1 ATCA-CATAAAAATTTTGG
72516754 TATACTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (19 bp):
ATCACATAAAAATTTTGGC
Found at i:72523443 original size:40 final size:40
Alignment explanation
Indices: 72523398--72523527 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72523388 CGGAATACAA
72523398 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
72523438 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
72523478 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
72523518 CCGGATATAA
1 CCGGATATAA
72523528 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72531420 original size:40 final size:40
Alignment explanation
Indices: 72531375--72531542 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
72531365 CGGAATACAA
72531375 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
72531415 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
72531455 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
72531495 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
72531535 CCGGATAT
1 CCGGATAT
72531543 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72538306 original size:21 final size:21
Alignment explanation
Indices: 72538282--72538324 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
72538272 AGCATTTAGG
72538282 CATACATAACACCAAACATGT
1 CATACATAACACCAAACATGT
72538303 CATACATAACACCAAACATGT
1 CATACATAACACCAAACATGT
72538324 C
1 C
72538325 TTTGATAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.30, G:0.05, T:0.19
Consensus pattern (21 bp):
CATACATAACACCAAACATGT
Found at i:72539037 original size:53 final size:54
Alignment explanation
Indices: 72538908--72539162 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
72538898 ACACGGGTAC
* * * *
72538908 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
72538957 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
72539010 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
72539065 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
72539118 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
72539163 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:72539099 original size:108 final size:110
Alignment explanation
Indices: 72538955--72539152 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
72538945 ATCCTTTTGA
* *
72538955 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
72539018 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
72539063 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
72539128 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
72539153 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:72542415 original size:12 final size:12
Alignment explanation
Indices: 72542398--72542424 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72542388 TGCAGTTTTT
72542398 ACATGGCCTAGC
1 ACATGGCCTAGC
72542410 ACATGGCCTAGC
1 ACATGGCCTAGC
72542422 ACA
1 ACA
72542425 CGGGTGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:72548897 original size:26 final size:26
Alignment explanation
Indices: 72548868--72549008 Score: 138
Period size: 27 Copynumber: 5.3 Consensus size: 26
72548858 ATCCCTATTT
* *
72548868 AAAATACTTTGGTTTACAAAATTACC
1 AAAATACCTTGGTTTATAAAATTACC
* * * *
72548894 AAAATACCCTGCTTTGTAAAATTACT
1 AAAATACCTTGGTTTATAAAATTACC
72548920 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATA-CCTTGGTTTATAAAATTACC
* * * *
72548947 AAAATACCCCTAGTTTGTAAAATTATC
1 AAAATA-CCTTGGTTTATAAAATTACC
* * *
72548974 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATA-CCTTGGTTTATAAAATTACC
72549001 AAAATACC
1 AAAATACC
72549009 CCTAATTTGT
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 28 0.28
27 71 0.72
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (26 bp):
AAAATACCTTGGTTTATAAAATTACC
Found at i:72548950 original size:27 final size:27
Alignment explanation
Indices: 72548885--72549108 Score: 184
Period size: 27 Copynumber: 8.3 Consensus size: 27
72548875 TTTGGTTTAC
*
72548885 AAAATTACCAAAATACCC-TGCTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
72548911 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTTGATTTGT
*
72548938 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGA-TTTGT
* *
72548965 AAAATTATCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGA-TTTGT
* *
72548992 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* ** * ** *
72549019 GAAATTACTGAAATACCCTCGACCTAT
1 AAAATTACCAAAATACCCTTGATTTGT
*** * *
72549046 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
72549073 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTTGATTTGT
*
72549100 AGAATTACC
1 AAAATTACC
72549109 GTTTTACCCT
Statistics
Matches: 166, Mismatches: 29, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 17 0.10
27 148 0.89
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:72549049 original size:54 final size:54
Alignment explanation
Indices: 72548880--72549108 Score: 223
Period size: 54 Copynumber: 4.3 Consensus size: 54
72548870 AATACTTTGG
* ** * *
72548880 TTTACAAAATTACCAAAATA-CCCTGCTTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGA
* *
72548933 TTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCC-CTA
1 TTTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACT-AAAATACCCTCGA
* * *
72548986 GTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGA
1 -TTTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGA
** *** * * * *
72549041 CCTATAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCAAAATACCCCT-AATTTGTAAAATTACTAAAATACCCTCGA
*
72549095 TTTATAGAATTACC
1 TTTATAAAATTACC
72549109 GTTTTACCCT
Statistics
Matches: 142, Mismatches: 28, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
53 24 0.17
54 115 0.81
55 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGA
Found at i:72549116 original size:27 final size:27
Alignment explanation
Indices: 72549086--72549349 Score: 336
Period size: 27 Copynumber: 9.8 Consensus size: 27
72549076 ATTACCAAAG
*
72549086 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
72549113 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
72549140 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72549167 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* **
72549194 TACCC-CTGATTTACATAATTATTGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
72549221 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72549248 TACCCTCTATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72549275 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72549302 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72549329 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
72549350 TCGAAATACC
Statistics
Matches: 208, Mismatches: 25, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 204 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:72549133 original size:81 final size:81
Alignment explanation
Indices: 72549048--72549349 Score: 306
Period size: 81 Copynumber: 3.7 Consensus size: 81
72549038 CGACCTATAA
** * * **** * *
72549048 AATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
1 AATTATTGATTTACCCTCGACTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
72549113 TACCCTC-AGTTTACAG
66 TACCCTCGA-TTTACAG
* * *
72549129 AATTACT-ATTTTACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGT
1 AATTATTGA-TTTACCCTCGACTTATAGAATTACCGTTTTACCCTC-AATTTACAGAATTACCGT
*
72549192 TTTACCC-CTGATTTACAT
64 TTTACCCTC-GATTTACAG
* * *
72549210 AATTATTGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCTATTTACAGAATTACCGTTT
1 AATTATTGATTTACCCTCGACTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
*
72549275 TACCCTCGATTTATAG
66 TACCCTCGATTTACAG
* * * * * * * *
72549291 AATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
1 AATTATTGATTTACCCTCGACTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTA
72549350 TCGAAATACC
Statistics
Matches: 186, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
80 3 0.02
81 180 0.97
82 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTATTGATTTACCCTCGACTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTT
TACCCTCGATTTACAG
Found at i:72549359 original size:27 final size:26
Alignment explanation
Indices: 72549221--72549469 Score: 79
Period size: 27 Copynumber: 9.2 Consensus size: 26
72549211 ATTATTGTTT
* * ***
72549221 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGAAA
* * ***
72549248 TACCCTCTATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGAAA
* * ***
72549275 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GAAA
* * ***
72549302 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GAAA
72549329 TACCCTCGATTTACAAAATTATCGAAA
1 TACCCTCGATTTACAAAATTA-CGAAA
* ** *
72549356 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTA-CGAAA
* *
72549383 TACCC-CTAATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTACAAAATTAC-GAAA
* * *
72549410 TACCCTTGACTTTTTA-AAAATTATAGAAG
1 TACCCTCGA---TTTACAAAATTA-CGAAA
* * *
72549439 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTAC-GAAA
72549466 TACC
1 TACC
72549470 TTTGGTTTGT
Statistics
Matches: 182, Mismatches: 29, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
26 7 0.04
27 154 0.85
28 1 0.01
29 16 0.09
30 4 0.02
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (26 bp):
TACCCTCGATTTACAAAATTACGAAA
Found at i:72549387 original size:81 final size:81
Alignment explanation
Indices: 72549221--72549397 Score: 183
Period size: 81 Copynumber: 2.2 Consensus size: 81
72549211 ATTATTGTTT
* * * * *** *
72549221 TACCCTCGACTTACAGAATTACCGTTTTACCCTCTATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATT
* *****
72549286 TATAGAATTACTGTTT
66 TATAAAATTACCAAAA
* *
72549302 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATT
*
72549367 TGTAAAATTACCAAAA
66 TATAAAATTACCAAAA
* *
72549383 TACCCCTAATTTACA
1 TACCCTTGATTTACA
72549398 AAGTTACAGA
Statistics
Matches: 77, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATT
TATAAAATTACCAAAA
Found at i:72549474 original size:27 final size:26
Alignment explanation
Indices: 72549422--72549477 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
72549412 CCCTTGACTT
*
72549422 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
72549448 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
72549475 TTT
1 TTT
72549478 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:72549595 original size:27 final size:27
Alignment explanation
Indices: 72549531--72549595 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
72549521 ACCCCTAAAA
*
72549531 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
72549558 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
72549585 GGTAAAATGAC
1 GGTAAAATGAC
72549596 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Done.