Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 244 of 378
Found at i:72550781 original size:25 final size:25
Alignment explanation
Indices: 72550753--72550800 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72550743 TTATACCATG
* * *
72550753 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72550778 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72550801 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72550903 original size:20 final size:20
Alignment explanation
Indices: 72550843--72550903 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
72550833 ATAAATATGG
*
72550843 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
72550863 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72550883 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72550903 T
1 T
72550904 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:72550980 original size:24 final size:24
Alignment explanation
Indices: 72550953--72551095 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
72550943 GAGGAAGTGA
*
72550953 AAAAGGGCTTATGCCCCATTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72550977 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72551001 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72551024 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72551048 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
72551072 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72551096 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72551041 original size:47 final size:47
Alignment explanation
Indices: 72550953--72551095 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
72550943 GAGGAAGTGA
*
72550953 AAAAGGGCTTATGCCCCATTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
72551001 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
72551048 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
72551096 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.49
48 33 0.38
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:72551069 original size:71 final size:72
Alignment explanation
Indices: 72550953--72551096 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
72550943 GAGGAAGTGA
* *
72550953 AAAAGGGCTTATGCCCCATTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
72551016 CCAGTTAT
65 CCAGTTAT
** * *
72551024 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
72551089 CAGTTAT
66 CAGTTAT
72551096 A
1 A
72551097 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:72551324 original size:31 final size:31
Alignment explanation
Indices: 72551286--72551349 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72551276 CCGTTTACGT
*
72551286 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
72551317 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72551348 AA
1 AA
72551350 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72553302 original size:42 final size:41
Alignment explanation
Indices: 72553185--72553311 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 41
72553175 CACAGTACTG
* * ** **
72553185 TATCAATGTCATATCCCAGATATGGTCTTACATGTAATCTTG
1 TATCGATGCCATATCCCAGATATGGTCTTACA-CAAATCTCA
* * *
72553227 TATCGTTGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTCA
1 TATCGATGCC-ATATCCCAGATATGGTCTTACACAAA-TCTCA
* *
72553270 TATCGATGCCATATCCCTGATATGGTCTTACACGTAATCTCA
1 TATCGATGCCATATCCCAGATATGGTCTTACAC-AAATCTCA
72553312 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (41 bp):
TATCGATGCCATATCCCAGATATGGTCTTACACAAATCTCA
Found at i:72555899 original size:20 final size:20
Alignment explanation
Indices: 72555840--72555900 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
72555830 AACCACCATA
*
72555840 AATATGGACAAGCCACTAGT
1 AATATGGACAAGCCACCAGT
* * * ***
72555860 ATTGTAGACAAGCTGTCAGT
1 AATATGGACAAGCCACCAGT
72555880 AATATGGACAAGCCACCAGT
1 AATATGGACAAGCCACCAGT
72555900 A
1 A
72555901 TTACAGGCAA
Statistics
Matches: 28, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (20 bp):
AATATGGACAAGCCACCAGT
Found at i:72568804 original size:40 final size:40
Alignment explanation
Indices: 72568748--72568964 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
72568738 TGGATGATAA
* * * *
72568748 CCGGGCTAAGACCCGAAGGCATTT-TCGCTAGTGACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGT-GCGAGTTACTATAT
* * *
72568788 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72568828 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72568868 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72568908 CCGGGCTATGTCCCAAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72568947 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72568965 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
38 14 0.09
39 15 0.10
40 126 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72576912 original size:40 final size:40
Alignment explanation
Indices: 72576857--72577019 Score: 258
Period size: 40 Copynumber: 4.1 Consensus size: 40
72576847 TGGATGATAA
* *
72576857 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72576897 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72576937 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72576977 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
72577016 CCGG
1 CCGG
72577020 TTAAATCCCA
Statistics
Matches: 116, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.02
39 17 0.15
40 97 0.84
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72580179 original size:29 final size:29
Alignment explanation
Indices: 72580115--72580196 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 29
72580105 TGCCGTATTT
72580115 TTTCCAGCATGCACACTTAGTG-CATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
72580143 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
72580172 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
72580197 ATCTCGTCAC
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 22 0.42
29 30 0.58
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:72582635 original size:27 final size:28
Alignment explanation
Indices: 72582578--72582647 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72582568 AAATTTGTAC
**
72582578 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72582606 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72582633 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72582648 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72582656 original size:27 final size:27
Alignment explanation
Indices: 72582578--72582659 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72582568 AAATTTGTAC
* *
72582578 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72582606 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72582633 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72582660 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72590558 original size:27 final size:28
Alignment explanation
Indices: 72590501--72590570 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72590491 AAATTTGTAC
**
72590501 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72590529 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72590556 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72590571 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72590579 original size:27 final size:27
Alignment explanation
Indices: 72590501--72590582 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72590491 AAATTTGTAC
* *
72590501 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72590529 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72590556 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72590583 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72594172 original size:13 final size:13
Alignment explanation
Indices: 72594154--72594194 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
72594144 AAAGCACGAC
72594154 TCACACGGGCGTG
1 TCACACGGGCGTG
*
72594167 TCACACGGGTGTG
1 TCACACGGGCGTG
72594180 TCACACGGGCGTG
1 TCACACGGGCGTG
72594193 TC
1 TC
72594195 CCTGCCAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.29, G:0.37, T:0.20
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:72602087 original size:40 final size:40
Alignment explanation
Indices: 72601856--72602080 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
72601846 TCGAATGATG
* * * *
72601856 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
72601896 TCCGGACTAAGAT-CTGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72601936 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
72601975 TCCGAGTTAAGTCCCGAAGGCATTTGTGCAAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72602015 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72602056 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72602081 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 31 0.20
40 115 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72602098 original size:80 final size:80
Alignment explanation
Indices: 72601938--72602113 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
72601928 TTACTAATTT
* * *
72601938 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTTGT
1 CGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCATTTGA
*
72602002 GCAAGTCACTAAATC
66 ACAAGTCACTAAATC
* * *
72602017 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGAGCTAAGTCCCGAAGGCATTTG
* *
72602081 AACGAGT-AGCTATATC
65 AACAAGTCA-CTAAATC
* *
72602097 C-GGTTAAATTCCGAAGG
1 CGGGTTAAGTCCCGAAGG
72602114 TACGTGATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 23 0.28
80 58 0.70
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCATTTGA
ACAAGTCACTAAATC
Found at i:72602103 original size:119 final size:119
Alignment explanation
Indices: 72601856--72602113 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
72601846 TCGAATGATG
* * * *
72601856 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATTT
1 TCCGAGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* ** **
72601921 GTGTGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
**
72601975 TCCGAGTTAAGTCCCGAAGGCATTTGTGC-AAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGAGTTAAGTCCCGAAGGC-TTTGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
72602038 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
72602095 TCCG-GTTAAATTCCGAAGG
1 TCCGAGTTAAGTCCCGAAGG
72602114 TACGTGATTC
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (119 bp):
TCCGAGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:72603635 original size:42 final size:42
Alignment explanation
Indices: 72603533--72603638 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
72603523 CATTGATGCT
* * * *
72603533 ATATCCCAAATATGGTCTTATACGAAATCTCATTTCGATGCC
1 ATATCCCAAATATGGTCTTACACGAAATCTCATATCAACGCC
* * * ** *
72603575 ATGTCCTAGACGTAGTCTTACACGAAATCTCATATCAACGCC
1 ATATCCCAAATATGGTCTTACACGAAATCTCATATCAACGCC
*
72603617 ATATCCCACATATGGTCTTACA
1 ATATCCCAAATATGGTCTTACA
72603639 TGATAACACC
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (42 bp):
ATATCCCAAATATGGTCTTACACGAAATCTCATATCAACGCC
Found at i:72607674 original size:40 final size:40
Alignment explanation
Indices: 72607616--72607691 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
72607606 GCATGAATGT
*
72607616 GTATGTTTAAGTCTGGTAATGTCTCGTACCCTGTTCTGAC
1 GTATGTTTAAGTCCGGTAATGTCTCGTACCCTGTTCTGAC
* *
72607656 GTATGTTTAAGTCCGGTAATGTCTTGTACTCTGTTC
1 GTATGTTTAAGTCCGGTAATGTCTCGTACCCTGTTC
72607692 CAGTGTCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.17, C:0.18, G:0.22, T:0.42
Consensus pattern (40 bp):
GTATGTTTAAGTCCGGTAATGTCTCGTACCCTGTTCTGAC
Found at i:72609554 original size:13 final size:13
Alignment explanation
Indices: 72609536--72609568 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
72609526 GGAGCACGTG
72609536 TAAAACATATCTT
1 TAAAACATATCTT
72609549 TAAAACATATCTT
1 TAAAACATATCTT
*
72609562 GAAAACA
1 TAAAACA
72609569 GAGTATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30
Consensus pattern (13 bp):
TAAAACATATCTT
Found at i:72614392 original size:16 final size:18
Alignment explanation
Indices: 72614353--72614400 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
72614343 GTAAAAATAC
72614353 ATTTATATAATAATTTTA
1 ATTTATATAATAATTTTA
* *
72614371 AATTATATAAT-A-TTTG
1 ATTTATATAATAATTTTA
*
72614387 ATTTATATTATAAT
1 ATTTATATAATAAT
72614401 GTTGTACATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
16 12 0.50
17 2 0.08
18 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTTATATAATAATTTTA
Found at i:72614394 original size:34 final size:36
Alignment explanation
Indices: 72614353--72614419 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
72614343 GTAAAAATAC
72614353 ATTTATATAATAAT-TT-TAAATTATATAATATTTG
1 ATTTATATAATAATGTTGTAAATTATATAATATTTG
* * *
72614387 ATTTATATTATAATGTTGTACATTATATTATAT
1 ATTTATATAATAATGTTGTAAATTATATAATAT
72614420 ACAATAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 13 0.46
35 2 0.07
36 13 0.46
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (36 bp):
ATTTATATAATAATGTTGTAAATTATATAATATTTG
Found at i:72617799 original size:89 final size:88
Alignment explanation
Indices: 72617643--72617831 Score: 274
Period size: 89 Copynumber: 2.1 Consensus size: 88
72617633 TAATGGTTAA
* * *
72617643 AGGGTCTTTTTGATGCTTTTTGATAGTTCAAGTACCCAATTGAGTGCAGAAAAAAACAAGGGCTT
1 AGGG-CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAGAAAAAAACAAGGGCTT
72617708 AATTGCT-TTTTTTGAAAAAGTTTG
65 AATTG-TGTTTTTTGAAAAAGTTTG
* *
72617732 AGGGCCTTTTTAATGCATTTTGAAAGTTCAAGTACTCAATTGAGTGCA-AAAAAAAGCAGGGGCT
1 AGGG-CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAGAAAAAAA-CAAGGGCT
*
72617796 TAATTGTGTTTTTTGAAAAATTTTG
64 TAATTGTGTTTTTTGAAAAAGTTTG
72617821 AGGGCTTTTTA
1 AGGGCTTTTTA
72617832 CACCCTTAAG
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
88 15 0.16
89 76 0.84
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.37
Consensus pattern (88 bp):
AGGGCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAGAAAAAAACAAGGGCTTA
ATTGTGTTTTTTGAAAAAGTTTG
Found at i:72620067 original size:15 final size:15
Alignment explanation
Indices: 72620047--72620088 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
72620037 TATGTGTTGT
72620047 AAAAAGGAAAAAAAA
1 AAAAAGGAAAAAAAA
*
72620062 AAAAAGAAAAAAAAA
1 AAAAAGGAAAAAAAA
72620077 AGAAAAGGAAAA
1 A-AAAAGGAAAA
72620089 CAAAGTATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGGAAAAAAAA
Found at i:72620070 original size:14 final size:14
Alignment explanation
Indices: 72620047--72620077 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
72620037 TATGTGTTGT
*
72620047 AAAAAGGAAAAAAA
1 AAAAAAGAAAAAAA
72620061 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
72620075 AAA
1 AAA
72620078 GAAAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAAA
Found at i:72620071 original size:11 final size:11
Alignment explanation
Indices: 72620057--72620082 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72620047 AAAAAGGAAA
72620057 AAAAAAAAAAG
1 AAAAAAAAAAG
72620068 AAAAAAAAAAG
1 AAAAAAAAAAG
72620079 AAAA
1 AAAA
72620083 GGAAAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:72620073 original size:16 final size:17
Alignment explanation
Indices: 72620054--72620088 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
72620044 TGTAAAAAGG
72620054 AAAAAAAA-AAAAAGAA
1 AAAAAAAAGAAAAAGAA
*
72620070 AAAAAAAAGAAAAGGAA
1 AAAAAAAAGAAAAAGAA
72620087 AA
1 AA
72620089 CAAAGTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:72620093 original size:15 final size:15
Alignment explanation
Indices: 72620048--72620093 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
72620038 ATGTGTTGTA
*
72620048 AAAAGGAAAAAAAAA
1 AAAAGGAAAAAAAAG
*
72620063 AAAAGAAAAAAAAAAG
1 AAAAG-GAAAAAAAAG
*
72620079 AAAAGGAAAACAAAG
1 AAAAGGAAAAAAAAG
72620094 TATACCTGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAGGAAAAAAAAG
Found at i:72624382 original size:19 final size:19
Alignment explanation
Indices: 72624353--72624390 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
72624343 ATATGTTTTT
72624353 TGAATTTTATATAATATTTG
1 TGAATTTTATAT-ATATTTG
72624373 TGAA-TTTATATATATTTG
1 TGAATTTTATATATATTTG
72624391 ATATTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (19 bp):
TGAATTTTATATATATTTG
Found at i:72626242 original size:30 final size:30
Alignment explanation
Indices: 72626208--72626269 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
72626198 TTTAACAAGA
*
72626208 AAATGTCTCTAAAATAATAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
* *
72626238 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
72626268 AA
1 AA
72626270 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAC
Found at i:72640143 original size:74 final size:74
Alignment explanation
Indices: 72640051--72640198 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
72640041 CTATAGGGAG
72640051 AATATTTCTTCTGTTAGCAGGGAAGGGAAAGGCATTTTGAATCTGAATTAGATGTATGGTCAAGA
1 AATATTTCTTCTGTTAGCAGGGAAGGGAAAGGCATTTTGAATCTGAATTAGATGTATGGTCAAGA
72640116 AACTTAGAT
66 AACTTAGAT
72640125 AATATTTCTTCTGTTAGCAGGGAAGGGAAAGGCATTTTGAATCTGAATTAGATGTATGGTCAAGA
1 AATATTTCTTCTGTTAGCAGGGAAGGGAAAGGCATTTTGAATCTGAATTAGATGTATGGTCAAGA
72640190 AACTTAGAT
66 AACTTAGAT
72640199 TTATGAGATA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (74 bp):
AATATTTCTTCTGTTAGCAGGGAAGGGAAAGGCATTTTGAATCTGAATTAGATGTATGGTCAAGA
AACTTAGAT
Found at i:72640520 original size:134 final size:134
Alignment explanation
Indices: 72640280--72640551 Score: 535
Period size: 134 Copynumber: 2.0 Consensus size: 134
72640270 CAGATCATTG
72640280 TCTTGGAGGGTTATCTAATTCCCATCTAAATTGTAGGAAACTTTTATGACCAAGATTATGTGATA
1 TCTTGGAGGGTTATCTAATTCCCATCTAAATTGTAGGAAACTTTTATGACCAAGATTATGTGATA
72640345 TGTAACATTGGATACAGTCAATATTACCCACTTAATATGTGAATCAAGATTCTCTCAAAATTATA
66 TGTAACATTGGATACAGTCAATATTACCCACTTAATATGTGAATCAAGATTCTCTCAAAATTATA
72640410 TTTA
131 TTTA
*
72640414 TCTTGGAGGGTTATCTAATTCCCCTCTAAATTGTAGGAAACTTTTATGACCAAGATTATGTGATA
1 TCTTGGAGGGTTATCTAATTCCCATCTAAATTGTAGGAAACTTTTATGACCAAGATTATGTGATA
72640479 TGTAACATTGGATACAGTCAATATTACCCACTTAATATGTGAATCAAGATTCTCTCAAAATTATA
66 TGTAACATTGGATACAGTCAATATTACCCACTTAATATGTGAATCAAGATTCTCTCAAAATTATA
72640544 TTTA
131 TTTA
72640548 TCTT
1 TCTT
72640552 ATATTATAAT
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 137 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.37
Consensus pattern (134 bp):
TCTTGGAGGGTTATCTAATTCCCATCTAAATTGTAGGAAACTTTTATGACCAAGATTATGTGATA
TGTAACATTGGATACAGTCAATATTACCCACTTAATATGTGAATCAAGATTCTCTCAAAATTATA
TTTA
Found at i:72645215 original size:16 final size:16
Alignment explanation
Indices: 72645190--72645237 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
72645180 AAAAAAAGTT
72645190 AAATAGAAAATTAAAAG
1 AAATA-AAAATTAAAAG
* *
72645207 AAATAAAAA-CAAAAT
1 AAATAAAAATTAAAAG
72645222 AGAATAAAAATTAAAA
1 A-AATAAAAATTAAAA
72645238 AGAACCTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 5 0.19
16 12 0.46
17 9 0.35
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (16 bp):
AAATAAAAATTAAAAG
Found at i:72647217 original size:2 final size:2
Alignment explanation
Indices: 72647210--72647249 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
72647200 TACTTTCAAA
72647210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72647250 TCGACTTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72651868 original size:93 final size:93
Alignment explanation
Indices: 72651756--72651926 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72651746 GCCCATAAGT
* *
72651756 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72651821 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72651849 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72651914 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72651927 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72651942 original size:46 final size:46
Alignment explanation
Indices: 72651748--72651928 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
72651738 TGTAACCCGC
* * *
72651748 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72651794 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72651844 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
72651887 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
72651929 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72654336 original size:30 final size:30
Alignment explanation
Indices: 72654292--72654380 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72654282 CAAAGATAAC
72654292 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72654321 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72654351 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72654381 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72654340 original size:15 final size:15
Alignment explanation
Indices: 72654292--72654371 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72654282 CAAAGATAAC
*
72654292 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72654306 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72654321 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72654336 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72654351 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72654366 AAGAAA
1 AAGAAA
72654372 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72654380 original size:15 final size:15
Alignment explanation
Indices: 72654303--72654380 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72654293 AGAAAACCGA
72654303 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72654318 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72654332 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72654347 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72654363 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72654378 ATA
1 ATA
72654381 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72657446 original size:93 final size:93
Alignment explanation
Indices: 72657334--72657504 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72657324 GCCCATAAGT
* *
72657334 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72657399 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72657427 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72657492 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72657505 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72657520 original size:46 final size:46
Alignment explanation
Indices: 72657326--72657506 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
72657316 TGTAACCCGC
* * *
72657326 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72657372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72657422 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
72657465 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
72657507 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72661180 original size:40 final size:40
Alignment explanation
Indices: 72661107--72661314 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
72661097 CAATTGAATG
* * * * * *
72661107 ATATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
72661147 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
72661187 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
72661227 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
72661267 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
72661307 ATATCCGG
1 ATATCCGG
72661315 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:72661250 original size:80 final size:80
Alignment explanation
Indices: 72661108--72661314 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
72661098 AATTGAATGA
* * * ** * ** * *
72661108 TATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
72661173 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
72661186 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
72661251 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72661268 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
72661315 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72670138 original size:29 final size:29
Alignment explanation
Indices: 72670003--72670137 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
72669993 GCTTGGAAGG
72670003 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
72670032 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
72670061 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
72670090 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
72670119 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
72670138 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:72671729 original size:53 final size:53
Alignment explanation
Indices: 72671597--72671846 Score: 233
Period size: 55 Copynumber: 4.7 Consensus size: 53
72671587 ACACGGGTAC
* * * * *
72671597 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
* *
72671646 CTTACCATTGCCATTTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * * * * *
72671699 CTCACCAATGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * *
72671754 CTTATCAATGCCATGTCTTGACATGGTCGTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA
* *
72671807 CCTTACCAATTGCCATGTCTTGGCATGGTCTTACACGGTA
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTA
72671847 TTCTTAAACC
Statistics
Matches: 162, Mismatches: 28, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
49 34 0.21
52 2 0.01
53 46 0.28
54 15 0.09
55 63 0.39
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:72671788 original size:108 final size:110
Alignment explanation
Indices: 72671644--72671841 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 110
72671634 ATCCTTTTGA
* * * *
72671644 AACTTACCATTGCCATTTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCGTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
72671707 -TGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGT
* ** *
72671752 AACTTATCAATGCCATGTCTTGACATGGTCGTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCGTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
* *
72671817 TGCCATGTCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGATCTTACA
72671842 CGGTATTCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.60
109 7 0.09
110 23 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCGTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGT
Found at i:72680913 original size:24 final size:24
Alignment explanation
Indices: 72680883--72681053 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
72680873 GAATGTGACT
* *
72680883 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
72680907 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
72680931 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
**
72680955 ATAGTGTATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
72680979 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
72681003 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
72681027 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
72681051 ATA
1 ATA
72681054 TGGTCTTTGC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:72684906 original size:13 final size:13
Alignment explanation
Indices: 72684888--72684913 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72684878 ATTTTTAAAA
72684888 GATGTTATCTTTC
1 GATGTTATCTTTC
72684901 GATGTTATCTTTC
1 GATGTTATCTTTC
72684914 ATTTTGTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (13 bp):
GATGTTATCTTTC
Found at i:72687690 original size:26 final size:27
Alignment explanation
Indices: 72687661--72687718 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
72687651 TTTATCCCCA
*
72687661 ATAAA-GTTTTGATGATTTTACCCTCG
1 ATAAATGTTTTGACGATTTTACCCTCG
* *
72687687 ATAAATTTTTTTACGATTTTACCCTCG
1 ATAAATGTTTTGACGATTTTACCCTCG
*
72687714 GTAAA
1 ATAAA
72687719 ATTTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (27 bp):
ATAAATGTTTTGACGATTTTACCCTCG
Found at i:72693502 original size:35 final size:35
Alignment explanation
Indices: 72693452--72693519 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
72693442 ATTGCTAGGG
*
72693452 CAAACACCTAGTAGTACTACTTCTAGTGTGCTTAA
1 CAAACACCTAGTAGTACTACCTCTAGTGTGCTTAA
* *
72693487 CAAACACCTATTAGTACTACCTCTATTGTGCTT
1 CAAACACCTAGTAGTACTACCTCTAGTGTGCTT
72693520 GCACATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (35 bp):
CAAACACCTAGTAGTACTACCTCTAGTGTGCTTAA
Found at i:72693653 original size:9 final size:9
Alignment explanation
Indices: 72693635--72693665 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
72693625 AGAATTACAG
*
72693635 TAAAGTAAA
1 TAAAGAAAA
72693644 TAAAGAAAA
1 TAAAGAAAA
72693653 TAAAGAAAA
1 TAAAGAAAA
72693662 TAAA
1 TAAA
72693666 ACATGAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (9 bp):
TAAAGAAAA
Found at i:72700242 original size:20 final size:21
Alignment explanation
Indices: 72700199--72700244 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
72700189 ACTGTTTTGT
72700199 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
72700219 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
72700238 TATGGGC
1 TATGGGC
72700245 AAGGGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:72700338 original size:59 final size:60
Alignment explanation
Indices: 72700272--72700384 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 60
72700262 GACTTGTAAT
* *
72700272 AGGGCTACGGCCCAGATTGACACTGATATGGGCT-AGGCCCAG-TATACTCTGATACTGTA
1 AGGGCTACGGCCCAAATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATACTGTA
* *
72700331 AGGGCTACGGCCCAAATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGAT
1 AGGGCTACGGCCCAAATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
72700385 TTCTGAATAG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
59 30 0.62
60 16 0.33
61 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (60 bp):
AGGGCTACGGCCCAAATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATACTGTA
Found at i:72704344 original size:49 final size:49
Alignment explanation
Indices: 72704282--72704625 Score: 546
Period size: 49 Copynumber: 6.9 Consensus size: 49
72704272 GTATGAGATA
*
72704282 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
72704331 TATAAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72704380 TATATATGTGATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 ----TA--T-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
72704436 TATATATGTGATAAGGCCTAATGGCCGATGTGACGAAAGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72704485 TATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTG-AAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72704533 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
72704582 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
72704626 TATATGTGTG
Statistics
Matches: 276, Mismatches: 11, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
48 46 0.17
49 179 0.65
50 1 0.00
52 2 0.01
53 2 0.01
55 1 0.00
56 45 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:72704447 original size:27 final size:27
Alignment explanation
Indices: 72704358--72704447 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 27
72704348 CTAATGGCCA
72704358 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
**
72704385 ATGTGAT--ATGTGATAAG-GCCTA-AT
1 ATGTGATGAATGTGA-AAGTGTGTATAT
72704409 GGCCAATGTGATGAATGTGAAAGTGTGTATAT
1 -----ATGTGATGAATGTGAAAGTGTGTATAT
72704441 ATGTGAT
1 ATGTGAT
72704448 AAGGCCTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
24 2 0.04
25 9 0.18
26 3 0.06
27 14 0.29
29 7 0.14
30 3 0.06
31 9 0.18
32 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:72704563 original size:97 final size:98
Alignment explanation
Indices: 72704282--72704625 Score: 546
Period size: 97 Copynumber: 3.4 Consensus size: 98
72704272 GTATGAGATA
*
72704282 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATAAATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
72704347 CCTAATGGCCAATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
72704380 TATATATGTGATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGT
1 ----TA--T-ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGT
* *
72704445 GATAAGGCCTAATGGCCGATGTGACGAAAGTGAAAGTGTG
59 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
72704485 TATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTG-AAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
72704549 CCTAATGGCCGATGTGATGAATGAGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72704582 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
72704626 TATATGTGTG
Statistics
Matches: 228, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
97 93 0.41
98 38 0.17
99 1 0.00
101 2 0.01
102 2 0.01
104 1 0.00
105 91 0.40
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:72704658 original size:146 final size:150
Alignment explanation
Indices: 72704282--72704625 Score: 552
Period size: 146 Copynumber: 2.3 Consensus size: 150
72704272 GTATGAGATA
* *
72704282 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATAAATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
72704347 CCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATATGTGATAAGGCCTAATGGC
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG---ATA-GTGATATGTGATAAGGCCTAATGGC
*
72704412 CAATGTGATGAATGTGAAAGTGTG
127 CAATGTGATGAATGAGAAAGTGTG
* *
72704436 TATATATGTGATAAGGCCTAATGGCCGATGTGACGAAAGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* *
72704501 TCTAATGGCCGATGTGATGAATGTG-AAGTGTG-TA-T-ATATGTGATAAGGCCTAATGGCCGAT
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGATAGTGATATGTGATAAGGCCTAATGGCCAAT
72704562 GTGATGAATGAGAAAGTGTG
131 GTGATGAATGAGAAAGTGTG
72704582 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
72704626 TATATGTGTG
Statistics
Matches: 180, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
146 86 0.48
147 1 0.01
149 2 0.01
153 7 0.04
154 84 0.47
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (150 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTGATAGTGATATGTGATAAGGCCTAATGGCCAAT
GTGATGAATGAGAAAGTGTG
Found at i:72704766 original size:37 final size:37
Alignment explanation
Indices: 72704712--72704802 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
72704702 AACTTGGAAA
*
72704712 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
72704750 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
72704787 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
72704803 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:72707533 original size:27 final size:27
Alignment explanation
Indices: 72707499--72707552 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
72707489 CTAAGCATGA
72707499 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
72707526 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
72707553 GGTCAGTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (27 bp):
CAACCATTTTTCGATTAATCTAATGGT
Found at i:72710132 original size:40 final size:40
Alignment explanation
Indices: 72710088--72710163 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
72710078 TGCACTTCGA
*
72710088 TGCCCATGTAT-ACACTTCGGTGTCCTTGTTTGCACGACTG
1 TGCCCAT-TATCACACTTCGGTGTCCATGTTTGCACGACTG
* * *
72710128 TGCCCGTTTTCACACTTTGGTGTCCATGTTTGCACG
1 TGCCCATTATCACACTTCGGTGTCCATGTTTGCACG
72710164 TCTATGCTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.06
40 29 0.94
ACGTcount: A:0.13, C:0.28, G:0.22, T:0.37
Consensus pattern (40 bp):
TGCCCATTATCACACTTCGGTGTCCATGTTTGCACGACTG
Found at i:72714815 original size:20 final size:20
Alignment explanation
Indices: 72714792--72714841 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
72714782 CCCCTGTTCG
* *
72714792 CACTTTGGTG-ATCTTGTTTA
1 CACTTTGGTGCAAC-TGTATA
*
72714812 CACTTTTGTGCAACTGTATA
1 CACTTTGGTGCAACTGTATA
72714832 CACTTTGGTG
1 CACTTTGGTG
72714842 TCCCTATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (20 bp):
CACTTTGGTGCAACTGTATA
Found at i:72714896 original size:20 final size:20
Alignment explanation
Indices: 72714871--72714908 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
72714861 GCCACTATTC
72714871 GCATTTCAGTGTCCCTGTAT
1 GCATTTCAGTGTCCCTGTAT
*
72714891 GCATTTCGGTGTCCCTGT
1 GCATTTCAGTGTCCCTGT
72714909 TTGAACGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.24, T:0.39
Consensus pattern (20 bp):
GCATTTCAGTGTCCCTGTAT
Found at i:72714946 original size:20 final size:20
Alignment explanation
Indices: 72714875--72714953 Score: 54
Period size: 20 Copynumber: 4.0 Consensus size: 20
72714865 CTATTCGCAT
* *
72714875 TTCAGTGTCCCT-GTATGCAT
1 TTCAGTGTCCCTGGT-TACAC
* *
72714895 TTCGGTGTCCCTGTTTGA-AC
1 TTCAGTGTCCCTGGTT-ACAC
* * *
72714915 GTCTGTGCCCCTGGTTACAC
1 TTCAGTGTCCCTGGTTACAC
*
72714935 TTCAGTGTCCCTGGCTACA
1 TTCAGTGTCCCTGGTTACA
72714954 TGTATGTGCC
Statistics
Matches: 44, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
19 1 0.02
20 42 0.95
21 1 0.02
ACGTcount: A:0.13, C:0.29, G:0.23, T:0.35
Consensus pattern (20 bp):
TTCAGTGTCCCTGGTTACAC
Found at i:72719530 original size:40 final size:40
Alignment explanation
Indices: 72719475--72719682 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
72719465 TGAATGATAC
* *
72719475 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
72719515 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
72719555 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
72719595 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
72719635 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
72719675 CC-GGCTAA
1 CCGGGCTAA
72719683 ATTTCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:72722237 original size:48 final size:48
Alignment explanation
Indices: 72722181--72722275 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
72722171 TTACATCGAA
72722181 TGCTTACATAGTCTGAGCTATGTCACACGGTCTAGCCACGCGGCCGTT
1 TGCTTACATAGTCTGAGCTATGTCACACGGTCTAGCCACGCGGCCGTT
72722229 TGCTTACATAGTCTGAGCTATGTCACACGGTCTAGCCACGCGGCCGT
1 TGCTTACATAGTCTGAGCTATGTCACACGGTCTAGCCACGCGGCCGT
72722276 GTGACCCCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.26
Consensus pattern (48 bp):
TGCTTACATAGTCTGAGCTATGTCACACGGTCTAGCCACGCGGCCGTT
Found at i:72726486 original size:6 final size:6
Alignment explanation
Indices: 72726475--72726704 Score: 460
Period size: 6 Copynumber: 38.3 Consensus size: 6
72726465 GCATATGTTG
72726475 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
72726523 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
72726571 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
72726619 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
72726667 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GT
72726705 GGTTATTCTC
Statistics
Matches: 224, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 224 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:72728178 original size:20 final size:20
Alignment explanation
Indices: 72728140--72728181 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
72728130 GATTTTTGGA
*
72728140 AAAATTAAATTTGATAAATT
1 AAAATTAAATTTAATAAATT
72728160 AAAATTAAA-TTAATCAAATT
1 AAAATTAAATTTAAT-AAATT
72728180 AA
1 AA
72728182 TTAAAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTAAATTTAATAAATT
Found at i:72729708 original size:41 final size:41
Alignment explanation
Indices: 72729663--72729780 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72729653 TGAAAGATAA
72729663 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72729704 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72729734 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72729775 ATGTAG
1 ATGTAG
72729781 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72729719 original size:71 final size:71
Alignment explanation
Indices: 72729631--72729794 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72729621 GAGATGTATC
72729631 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72729696 AGGACA
66 AGGACA
72729702 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72729767 AGGACA
66 AGGACA
72729773 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72729795 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72736317 original size:25 final size:25
Alignment explanation
Indices: 72736283--72736349 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
72736273 AATCAAAATG
* *
72736283 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
72736308 AGAATCAGAATCAGTATCAGTTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
72736333 AAAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
72736350 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:72736504 original size:27 final size:26
Alignment explanation
Indices: 72736467--72736574 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
72736457 AGCATGGCTG
* *
72736467 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
72736493 CCAGATACAGATATTGTGGCAGAGCCG
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
72736520 CTAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
72736547 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
72736574 C
1 C
72736575 TTAATAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 50 0.71
28 8 0.11
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:72736557 original size:54 final size:53
Alignment explanation
Indices: 72736469--72736572 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 53
72736459 CATGGCTGCC
* * * *
72736469 AGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCGCT
1 AGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCGCT
* *
72736522 AGAACAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCC
1 AGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCC
72736573 ACTTAATAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 10 0.23
54 34 0.77
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (53 bp):
AGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCGCT
Found at i:72738553 original size:40 final size:40
Alignment explanation
Indices: 72738457--72738675 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
72738447 CGAATGGTGT
* * * *
72738457 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
72738498 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
72738538 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
72738578 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
72738618 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
72738658 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
72738676 ACAATCGAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 134 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:72738671 original size:120 final size:121
Alignment explanation
Indices: 72738457--72738675 Score: 325
Period size: 120 Copynumber: 1.8 Consensus size: 121
72738447 CGAATGGTGT
* *
72738457 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
72738522 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72738578 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
72738641 TGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
72738676 ACAATCGAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 1 0.01
120 60 0.69
121 26 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72738700 original size:80 final size:80
Alignment explanation
Indices: 72738456--72738701 Score: 206
Period size: 80 Copynumber: 3.1 Consensus size: 80
72738446 TCGAATGGTG
** * * * * * * *
72738456 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACCAAAACCGGGCT-AAGTCCCGAAGACAA
* * * *
72738520 TTGTGCGAGTTACCAAA
64 TCGAGCGAGTCACTAAA
* * * * * * * *
72738537 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
* *
72738602 GTGCGAGTTACTAAA
66 GAGCGAGTCACTAAA
* * * *
72738617 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGACAATC
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
* *
72738682 GAGCGAGTCGCTATA
66 GAGCGAGTCACTAAA
72738697 TCCGG
1 TCCGG
72738702 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 26, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
80 110 0.80
81 28 0.20
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
GAGCGAGTCACTAAA
Found at i:72746653 original size:40 final size:40
Alignment explanation
Indices: 72746552--72746766 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
72746542 CGAATGGTGT
* * * *
72746552 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
72746593 CCGAG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
72746633 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
72746673 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
72746713 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
72746753 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
72746767 AAAGACAATC
Statistics
Matches: 151, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 127 0.84
41 24 0.16
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:72746783 original size:120 final size:121
Alignment explanation
Indices: 72746552--72746784 Score: 308
Period size: 120 Copynumber: 1.9 Consensus size: 121
72746542 CGAATGGTGT
* *
72746552 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCAATT
* * * * * * *
72746617 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAA
* * *
72746673 CCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAATCCG-GGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGAGTC-AATTCCCGAAGGCAAT
* * *
72746736 TGTGCGAATTACTATAACCGGGCTATGTCCCAAAGACAATCGAGCGAGT
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGT
72746785 CGCTATATCC
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 2 0.02
120 67 0.70
121 27 0.28
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAA
Found at i:72746795 original size:80 final size:80
Alignment explanation
Indices: 72746619--72746796 Score: 176
Period size: 80 Copynumber: 2.2 Consensus size: 80
72746609 AGGCATTTGT
* * * * * * *
72746619 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTCACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGT
* * * * *
72746684 CCCGAAGGCATTTGT
66 CCCAAAGACAATCGA
* * * * * *
72746699 GCTAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGT
1 GCGAGTCACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGT
72746764 CCCAAAGACAATCGA
66 CCCAAAGACAATCGA
* *
72746779 GCGAGTCGCTATATCCGG
1 GCGAGTCACTAAATCCGG
72746797 TTAAATTCCG
Statistics
Matches: 78, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (80 bp):
GCGAGTCACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGT
CCCAAAGACAATCGA
Found at i:72748662 original size:27 final size:27
Alignment explanation
Indices: 72748632--72748738 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
72748622 AGGGCAAAAT
* * **
72748632 GGTAATTTTACCCCACAAGGGTATCCC
1 GGTAATTCTACCCTACAAGGGTATTTC
72748659 GGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
72748686 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72748713 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
72748739 TAATAATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 64 0.91
28 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72748705 original size:54 final size:53
Alignment explanation
Indices: 72748636--72748738 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
72748626 CAAAATGGTA
*
72748636 ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCCCGATAATTCTACCCTACAGGCGTATTTCGGT
* ** *
72748689 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 ATTT-TACCCCACAAGGGTATCCCGATAATTCTACCCTACAGGCGTATTT
72748739 TAATAATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCCCGATAATTCTACCCTACAGGCGTATTTCGGT
Found at i:72748761 original size:27 final size:27
Alignment explanation
Indices: 72748742--72749118 Score: 358
Period size: 27 Copynumber: 14.2 Consensus size: 27
72748732 GGTATTTTAA
** ***
72748742 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTACAAATCGAGGGTATTTCGG
* * * * *
72748769 TAATTCTATAAATCGGGGGTATTTTGA
1 TAATTTTACAAATCGAGGGTATTTCGG
*
72748796 TAATTTTACAAATTGAGGGTATTTC-G
1 TAATTTTACAAATCGAGGGTATTTCGG
*
72748822 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
72748849 TAATTTTAC-AATCGACGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
72748875 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCGG
* * *
72748902 TAATTTTATAAACCGGGGGTA-TT-GG
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
72748927 TAATTTTACAAGTCGAGGGTA-TTCAG
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
72748953 TAATTTTACAAATCGAGAGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCGG
*
72748980 TAATTTTGCAAA-CTGAGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTCGG
**
72749007 TAATTTTACAAATCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGG
* * *
72749034 TAATTTTAC-AATCGACGATATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGG
* * *
72749060 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGG
* * *
72749087 TAATTTTACAACT-GGGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCGG
72749113 TAATTT
1 TAATTT
72749119 GGTAAACTAA
Statistics
Matches: 289, Mismatches: 52, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
25 24 0.08
26 106 0.37
27 155 0.54
28 4 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGG
Found at i:72748853 original size:53 final size:53
Alignment explanation
Indices: 72748731--72749118 Score: 351
Period size: 53 Copynumber: 7.3 Consensus size: 53
72748721 TACCCTACAG
* * ** *** * * *
72748731 GGGTATTTTAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGA
* *
72748785 GGGTATTT-TGATAATTTTACAAATTGAGGGTATTTCGTAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGA
*
72748838 GGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGA
* ** * * * * *
72748891 GGATATTTGGGTAATTTTATAAACCGGGGGTA-TTGGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGA
* *
72748943 GGGTA-TTCAGTAATTTTACAAATCGAGAGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATC-GA
* *
72748996 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAATAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGA
* * * * * * * *
72749049 CGATATTTC-GATAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACT-GG
1 GGGTATTTCAG-TAATTTTACAAATCGAGGGTA-TTTCGTAATTTTACAAATCGA
72749102 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
72749119 GGTAAACTAA
Statistics
Matches: 273, Mismatches: 48, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
51 20 0.07
52 37 0.14
53 136 0.50
54 80 0.29
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGA
Found at i:72748975 original size:105 final size:105
Alignment explanation
Indices: 72748796--72749067 Score: 313
Period size: 105 Copynumber: 2.6 Consensus size: 105
72748786 GGTATTTTGA
**
72748796 TAATTTTACAAATTGAGGGTATTTCGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAT
1 TAATTTTACAAACCGAGGGTA-TTCGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAT
*
72748861 CGACGGTATTTC-GATAATTTTACAAA-TCGAGGATATTTGGG
65 CGACGGTATTTCAG-TAATTTTACAAACT-GAGGATATTTCGG
* * * *
72748902 TAATTTTATAAACCGGGGGTATTGGTAATTTTACAAGTCGAGGGTA-TTCAGTAATTTTACAAAT
1 TAATTTTACAAACCGAGGGTATTCGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AAT
* *
72748966 CGA-GAGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGG
65 CGACG-GTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
* * * *
72749007 TAATTTTACAAATCGAGGGTATTTCAATAATTTTAC-AATCGACGATATTTC-GATAATTTTA
1 TAATTTTACAAACCGAGGGTA-TTC-GTAATTTTACAAATCGAGGGTATTTCAG-TAATTTTA
72749068 TAAACCGGGG
Statistics
Matches: 141, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
104 15 0.11
105 76 0.54
106 30 0.21
107 20 0.14
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (105 bp):
TAATTTTACAAACCGAGGGTATTCGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC
GACGGTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
Found at i:72749194 original size:27 final size:27
Alignment explanation
Indices: 72749164--72749217 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
72749154 CGAATGGGCT
72749164 TAAAGACCTTCTCGGCCCAAATCGGCC
1 TAAAGACCTTCTCGGCCCAAATCGGCC
*
72749191 TAAAGCCCTTCTCGGCCCAAATCGGCC
1 TAAAGACCTTCTCGGCCCAAATCGGCC
72749218 CACATGCTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.39, G:0.19, T:0.19
Consensus pattern (27 bp):
TAAAGACCTTCTCGGCCCAAATCGGCC
Found at i:72752441 original size:19 final size:18
Alignment explanation
Indices: 72752401--72752441 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
72752391 AATATTACAC
*
72752401 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
72752419 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
72752438 ATTT
1 ATTT
72752442 TGCTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:72763685 original size:93 final size:93
Alignment explanation
Indices: 72763578--72763748 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72763568 GCCCCTAAGT
* *
72763578 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72763643 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
72763671 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72763736 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72763749 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:72763745 original size:46 final size:46
Alignment explanation
Indices: 72763573--72763745 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
72763563 AACCCGCCCC
* * *
72763573 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
72763619 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
72763667 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
72763712 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72763746 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:72766269 original size:50 final size:51
Alignment explanation
Indices: 72766194--72766328 Score: 155
Period size: 50 Copynumber: 2.6 Consensus size: 51
72766184 GAAGCTATGG
* * *
72766194 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACCATCT
1 GGTATACATAGTAGCTTGCACTTAGTACTACACACGCGACCTAAACCATCT
* * *
72766244 GGTATACATAGTAGCTTGCCCTTAGTACTACACACGTGACCTAAAACCATTT
1 GGTATACATAGTAGCTTGCACTTAGTACTACACACGCGACCT-AAACCATCT
*** * *
72766296 TAAACACATAGTAGCTTGCACATAGTACTACAC
1 GGTATACATAGTAGCTTGCACTTAGTACTACAC
72766329 GTGTTCTCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 37 0.52
52 34 0.48
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (51 bp):
GGTATACATAGTAGCTTGCACTTAGTACTACACACGCGACCTAAACCATCT
Found at i:72766314 original size:52 final size:50
Alignment explanation
Indices: 72766200--72766328 Score: 150
Period size: 52 Copynumber: 2.5 Consensus size: 50
72766190 ATGGGGTATG
* * ** *
72766200 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGGTATA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
* * * *
72766250 CATAGTAGCTTGCCCTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCT--AACCATCTGAAACA
*
72766302 CATAGTAGCTTGCACATAGTACTACAC
1 CATAGTAGCTTGCACTTAGTACTACAC
72766329 GTGTTCTCAC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 32 0.48
52 34 0.52
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (50 bp):
CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
Found at i:72769779 original size:37 final size:37
Alignment explanation
Indices: 72769729--72769800 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
72769719 TTGGTTCTTG
* *
72769729 CTTATATTTTTCTAGACTTAATTTGAGTTTTTGAACC
1 CTTATAATTTTCTAGAATTAATTTGAGTTTTTGAACC
72769766 CTTATAATTTTCTAGAATTAATTTGAGTTTTTGAA
1 CTTATAATTTTCTAGAATTAATTTGAGTTTTTGAA
72769801 ACCTCCTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.51
Consensus pattern (37 bp):
CTTATAATTTTCTAGAATTAATTTGAGTTTTTGAACC
Found at i:72779004 original size:24 final size:24
Alignment explanation
Indices: 72778972--72779022 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
72778962 TATCACCAGA
72778972 TACAATGCTAATTTAACCTTCAGC
1 TACAATGCTAATTTAACCTTCAGC
72778996 TACAATGCTAATTTAACCTTCAGC
1 TACAATGCTAATTTAACCTTCAGC
72779020 TAC
1 TAC
72779023 CTTAGAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (24 bp):
TACAATGCTAATTTAACCTTCAGC
Found at i:72788302 original size:27 final size:27
Alignment explanation
Indices: 72788239--72788291 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
72788229 GACCCCGATT
* *
72788239 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCCTGTAG
*
72788266 TGTAAAATGATCGTAATACCCCTGTA
1 TGTAAAATGATCGAAATACCCCTGTA
72788292 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
TGTAAAATGATCGAAATACCCCTGTAG
Found at i:72793599 original size:14 final size:14
Alignment explanation
Indices: 72793580--72793610 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
72793570 TCTCCTTGGC
*
72793580 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
72793594 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
72793608 CGG
1 CGG
72793611 ACTATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:72804373 original size:28 final size:28
Alignment explanation
Indices: 72804333--72804388 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
72804323 CAATAAGGAG
72804333 TTTCCAATCATGGTACTTCTTCTGGACT
1 TTTCCAATCATGGTACTTCTTCTGGACT
72804361 TTTCCAATCATGGTACTTCTTCTGGACT
1 TTTCCAATCATGGTACTTCTTCTGGACT
72804389 GACTCCATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.14, T:0.43
Consensus pattern (28 bp):
TTTCCAATCATGGTACTTCTTCTGGACT
Found at i:72805670 original size:20 final size:19
Alignment explanation
Indices: 72805626--72805671 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
72805616 TATTGGACAT
* *
72805626 ATTTTATTATTTAAATTAT
1 ATTTTATTATTCAAATTAA
*
72805645 AGTTTATATATTCAAATTAA
1 ATTTTAT-TATTCAAATTAA
72805665 ATTTTAT
1 ATTTTAT
72805672 GAATAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
ATTTTATTATTCAAATTAA
Found at i:72809136 original size:30 final size:29
Alignment explanation
Indices: 72809042--72809143 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
72809032 TATAGTGAAT
* * *
72809042 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
72809071 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
72809099 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
72809129 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72809144 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:72815970 original size:30 final size:29
Alignment explanation
Indices: 72815876--72815977 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
72815866 TATAGTGAAT
* * *
72815876 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
72815905 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
72815933 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
72815963 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72815978 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:72817872 original size:138 final size:137
Alignment explanation
Indices: 72817714--72817996 Score: 460
Period size: 138 Copynumber: 2.1 Consensus size: 137
72817704 AAGAAGATAG
* *
72817714 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACTGGATTTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
*
72817779 AATATAAACAGTTATATTAATTAA-CTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTT
66 AATATAAA-AATTATATTAATTAATCTTC-GTCAAAATATAAAAGACATGGAAATTAATATTCTT
72817843 TTGGAAAGA
129 TTGGAAAGA
* * *
72817852 ATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
* *
72817917 AATATAAAAATTATATTAATTAATTTTCGTCAAAATATAAAAGACGTGGAAATTAATATTCTTTT
66 AATATAAAAATTATATTAATTAATCTTCGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
*
72817982 TGAAAGA
131 GGAAAGA
72817989 ATATAATT
1 ATATAATT
72817997 CATTTTTCTA
Statistics
Matches: 135, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
137 64 0.47
138 71 0.53
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (137 bp):
ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
AATATAAAAATTATATTAATTAATCTTCGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GGAAAGA
Found at i:72818106 original size:75 final size:75
Alignment explanation
Indices: 72817978--72818121 Score: 261
Period size: 75 Copynumber: 1.9 Consensus size: 75
72817968 ATTAATATTC
*
72817978 TTTTTGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
72818043 TCCTATAATA
66 TCCTATAATA
* *
72818053 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTGTTCTCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
72818118 TCCT
66 TCCT
72818122 GGTTTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (75 bp):
TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
TCCTATAATA
Found at i:72820629 original size:27 final size:27
Alignment explanation
Indices: 72820599--72820656 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
72820589 TCTCTTATGA
72820599 ACCTTGTGTTTAGTGTCTCGATGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
*
72820626 ACCTTGTGTTTAGTGTCTCGGTGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
72820653 ACCT
1 ACCT
72820657 CATGTTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.40
Consensus pattern (27 bp):
ACCTTGTGTTTAGTGTCTCGATGGACT
Found at i:72820662 original size:27 final size:27
Alignment explanation
Indices: 72820605--72820669 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
72820595 ATGAACCTTG
**
72820605 TGTTTAGTGTCTCGATGGACTACCTTG
1 TGTTTAGTGTCTCGATGGACTACCTCA
*
72820632 TGTTTAGTGTCTCGGTGGACTACCTCA
1 TGTTTAGTGTCTCGATGGACTACCTCA
*
72820659 TGTTTATTGTC
1 TGTTTAGTGTC
72820670 CTGATAAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.43
Consensus pattern (27 bp):
TGTTTAGTGTCTCGATGGACTACCTCA
Found at i:72824877 original size:51 final size:50
Alignment explanation
Indices: 72824808--72824930 Score: 160
Period size: 49 Copynumber: 2.5 Consensus size: 50
72824798 CCGGTGGCTG
*
72824808 CACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGTGGCCTT
1 CACATAGTACCACACTTGTAGTCAAAGCTA-CTTCTTCACAAAGTGGCCTT
* * * * *
72824859 CACATAGTATCACACTTGT-GACCAAGCTATTTCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTTGTAGTCAAAGCTACTTCTTCACAAAGTGGCCTT
*
72824908 CAGATAGTACCACACTTG-AGTCA
1 CACATAGTACCACACTTGTAGTCA
72824931 CTAGTGATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
49 36 0.59
50 8 0.13
51 17 0.28
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (50 bp):
CACATAGTACCACACTTGTAGTCAAAGCTACTTCTTCACAAAGTGGCCTT
Found at i:72829713 original size:27 final size:27
Alignment explanation
Indices: 72829675--72829841 Score: 200
Period size: 27 Copynumber: 6.1 Consensus size: 27
72829665 AGCATGGCTG
* *
72829675 CCAGATACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
72829702 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
*
72829730 CCATA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
72829757 CCAGATTA-A-ATAATCGTGGCATAGCCA
1 CCAGA-TACAGATAAT-GTGGCAGAGCCA
72829784 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
72829811 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
72829838 CCAG
1 CCAG
72829842 GACGCTTCCT
Statistics
Matches: 123, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
25 1 0.01
26 4 0.03
27 98 0.80
28 19 0.15
29 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:72829776 original size:54 final size:54
Alignment explanation
Indices: 72829675--72829841 Score: 230
Period size: 54 Copynumber: 3.1 Consensus size: 54
72829665 AGCATGGCTG
* * *
72829675 CCAGATACAGATA-ATGTGACAGAGTCACCAGA-TACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGATTA-A-ATAATTGTGGCATAGCCA
* *
72829730 CCATAACAGATATATGTGGCAGAGCCACCAGATTAAATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAAATAATTGTGGCATAGCCA
* *
72829784 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAAATAATTGTGGCATAGCCA
72829838 CCAG
1 CCAG
72829842 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
54 77 0.76
55 22 0.22
56 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATTAAATAATTGTGGCATAGCCA
Found at i:72837756 original size:27 final size:27
Alignment explanation
Indices: 72837725--72837891 Score: 110
Period size: 27 Copynumber: 6.1 Consensus size: 27
72837715 AGCATGGCTG
* * *
72837725 CCAGATACAGATAATGTGATAGAGTCA
1 CCAGATACAGATAATGTGACAAAGCCA
*
72837752 CCAGATACAGATAATTGTGGCAAAGCCA
1 CCAGATACAGATAA-TGTGACAAAGCCA
* *
72837780 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGACAAAGCCA
* * *
72837807 CCAAATTA-A-ATAATCGTGGCATAGCCA
1 CCAGA-TACAGATAAT-GTGACAAAGCCA
* * * *
72837834 CCA-AAACAGATATATATGGCAGAGCCA
1 CCAGATACAGATA-ATGTGACAAAGCCA
* *
72837861 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGACAAAGCCA
72837888 CCAG
1 CCAG
72837892 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
25 1 0.01
26 5 0.04
27 91 0.78
28 19 0.16
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
CCAGATACAGATAATGTGACAAAGCCA
Found at i:72837789 original size:54 final size:55
Alignment explanation
Indices: 72837725--72837891 Score: 216
Period size: 54 Copynumber: 3.1 Consensus size: 55
72837715 AGCATGGCTG
** * *
72837725 CCAGATACAGATA-ATGTGATAGAGTCACCAGATACAGATAATTGTGGCAAAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGATACAGATAATTGTGGCATAGCCA
* *
72837780 CCAGAACAGATATATGTGGCAGAGCCACCAAATTA-A-ATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA-TACAGATAATTGTGGCATAGCCA
* *
72837834 CCAAAACAGATATATATGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATTGTGGCATAGCCA
72837888 CCAG
1 CCAG
72837892 GACGCTTCCT
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
53 2 0.02
54 72 0.74
55 21 0.22
56 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.19
Consensus pattern (55 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATTGTGGCATAGCCA
Found at i:72849103 original size:43 final size:43
Alignment explanation
Indices: 72849042--72849197 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
72849032 GGGGTGTTAC
* *
72849042 AGACCATGTTTGGGACATTGGCATTGTAT-TGTTATTACGTGTA
1 AGACCATGTCTGGGACATTGGCATTGTATATG-TATTACATGTA
* *
72849085 AGACCATGTCTAGGACATTGGCATCAT-TATATG-ATTTCATGTA
1 AGACCATGTCTGGGACATTGGCAT--TGTATATGTATTACATGTA
* * *
72849128 AGACCATGTCTGGGACATTGGTATCG-ATATGTGATAACATGTA
1 AGACCATGTCTGGGACATTGGCATTGTATATGT-ATTACATGTA
* *
72849171 AGACCATATCTGGGATA-TGGCATTGTA
1 AGACCATGTCTGGGACATTGGCATTGTA
72849198 CGAGCTATAT
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
41 5 0.05
42 6 0.06
43 76 0.82
44 3 0.03
45 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
AGACCATGTCTGGGACATTGGCATTGTATATGTATTACATGTA
Found at i:72852258 original size:22 final size:23
Alignment explanation
Indices: 72852220--72852266 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
72852210 AATGATGGCT
* *
72852220 TATTTTTAATTATTTTACTATTA
1 TATTTTTAATTAATTTACAATTA
72852243 TATTTTTAA-TAATTTACAATTA
1 TATTTTTAATTAATTTACAATTA
72852265 TA
1 TA
72852267 ACCTTATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTTTTAATTAATTTACAATTA
Found at i:72853594 original size:18 final size:17
Alignment explanation
Indices: 72853562--72853595 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72853552 TAGATAACGT
*
72853562 TATTCTTTTTTCTCTTA
1 TATTCTTTCTTCTCTTA
72853579 TATTCTCTTCTTCTCTT
1 TATTCT-TTCTTCTCTT
72853596 TTTGGGCGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTCTTTCTTCTCTTA
Found at i:72857838 original size:39 final size:40
Alignment explanation
Indices: 72857709--72857872 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
72857699 ATAACGAAGG
72857709 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
72857749 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
72857789 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
72857828 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
72857867 CGAAGG
1 CGAAGG
72857873 TACTTGGTTT
Statistics
Matches: 115, Mismatches: 7, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
38 5 0.04
39 37 0.32
40 73 0.63
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:72866092 original size:40 final size:40
Alignment explanation
Indices: 72865983--72866249 Score: 411
Period size: 40 Copynumber: 6.8 Consensus size: 40
72865973 TGGATGATAA
* *
72865983 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
72866022 CGAAGGCATTTGTGC-AGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
72866061 CGAAGGCATTTGTGCGAGTTAGTATATCCGGGATAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
72866101 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
72866141 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
72866180 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
72866219 CGAAGACATTTGAGCGAG-TAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
72866250 TTAAATCCGA
Statistics
Matches: 214, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
38 23 0.11
39 93 0.43
40 98 0.46
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:72872891 original size:52 final size:52
Alignment explanation
Indices: 72872831--72872938 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
72872821 GAATTGGATT
*
72872831 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
1 TTTAGACCATACTTAAAAAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
* *
72872883 TTTAGACCATACTTAAAAAAGTTTGTGGTTGTGTTTGTCGATTATATTTTGA
1 TTTAGACCATACTTAAAAAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
72872935 TTTA
1 TTTA
72872939 TTCTCAAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.47
Consensus pattern (52 bp):
TTTAGACCATACTTAAAAAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
Found at i:72874951 original size:28 final size:28
Alignment explanation
Indices: 72874910--72874979 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72874900 ATAGTAAGTC
*
72874910 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
* *
72874938 TGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
72874966 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72874980 CAATCTCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:72875543 original size:2 final size:2
Alignment explanation
Indices: 72875536--72875561 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72875526 GGCATACATT
72875536 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
72875562 GCCGAATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72881594 original size:14 final size:14
Alignment explanation
Indices: 72881575--72881605 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
72881565 TGCTCCATTG
72881575 AGATTGTCAAGTAA
1 AGATTGTCAAGTAA
72881589 AGATTGTCAAGTAA
1 AGATTGTCAAGTAA
72881603 AGA
1 AGA
72881606 AACCATGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (14 bp):
AGATTGTCAAGTAA
Found at i:72886647 original size:48 final size:48
Alignment explanation
Indices: 72886492--72886864 Score: 342
Period size: 48 Copynumber: 7.7 Consensus size: 48
72886482 AAAGGTTAAG
* * * *
72886492 ATGCCAATGCCACGCCCCAAACATGGTCTTACACTGGCTCTCATAT--
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * * * *
72886538 ATCGGCACCGATGCCATGTTCCAAACATGGTCTCACACTAGCCCACGTGTCG
1 AT--G--CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * * * *
72886590 AGGCTGATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * ** * *
72886638 ATGTCGATGCCATGTTCCAAACATGGTCTTACGTTGGCTCACATAT-A
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
*
72886685 GAGGCCGATGCCATGTCCCAAACATGGTCTTACACTCA-CTCTCATATCA
1 -ATGCCGATGCCATGTCCCAAACATGGTCTTACACT-AGCTCTCATATCA
* * * *
72886734 ATACCGATGCCATGTTCCAAACATGGTCTTGCACTAGCT-TACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATATCA
* * *
72886782 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
72886830 ATGCCGATGTCATGTTCCAAACATGGTCTTACACT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACT
72886865 GGATCACATA
Statistics
Matches: 258, Mismatches: 57, Indels: 22
0.77 0.17 0.07
Matches are distributed among these distances:
46 2 0.01
47 3 0.01
48 216 0.84
49 2 0.01
50 34 0.13
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
Found at i:72886664 original size:96 final size:96
Alignment explanation
Indices: 72886498--72886874 Score: 461
Period size: 96 Copynumber: 3.9 Consensus size: 96
72886488 TAAGATGCCA
* * * *
72886498 ATGCCACGCCCCAAACATGGTCTTACACTGGCTCTCATAT--ATCGGCACCGATGCCATGTTCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAAT--G--CCGATGCCATGTTCCA
* * * * *
72886561 AACATGGTCTCACACTAGCCCACGTGTCGAGGCTG
62 AACATGGTCTTACACTAGCTCACATATCGAGGCCG
* * * *
72886596 ATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCAATGTCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAACA
** * *
72886661 TGGTCTTACGTTGGCTCACATATAGAGGCCG
66 TGGTCTTACACTAGCTCACATATCGAGGCCG
* * *
72886692 ATGCCATGTCCCAAACATGGTCTTACACTCACTCTCATATCAATACCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAACA
* *
72886757 TGGTCTTGCACTAGCTTACATATCGAGGCCG
66 TGGTCTTACACTAGCTCACATATCGAGGCCG
* * *
72886788 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCCGATGTCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAACA
* *
72886853 TGGTCTTACACTGGATCACATA
66 TGGTCTTACACTAGCTCACATA
72886875 ACCCTAGTAT
Statistics
Matches: 237, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
96 201 0.85
98 34 0.14
100 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTAGCTCACATATCGAGGCCG
Found at i:72894364 original size:48 final size:47
Alignment explanation
Indices: 72894211--72894582 Score: 332
Period size: 48 Copynumber: 7.7 Consensus size: 47
72894201 AAAAGGGTAA
* *
72894211 GATGTCGATTCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACT-ACTCTC--ATATC
* ** * * * * * * *
72894261 AATATCGATTCTATGTTCCAAACATGGTCTTACACTAGCCCACTTGTC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACTA-CTCTCATATC
* *
72894309 GAGGCCGATGCCATGTCCCAAACATAGTCTTACACTCACTCTCATATC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACT-ACTCTCATATC
* * * *
72894357 GATGCCGATGCCATG-CTCCAAACATGGTCTTATATTGGCTCACATATC
1 GATGCCGATGCCATGTC-CCAAACATGGTCTTACACT-ACTCTCATATC
* * *
72894405 GAGGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATATC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACTA-CTCTCATATC
* * ** * * *
72894453 AATGCCAATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACT-ACTCTCATATC
* * * *
72894501 GAGGGCGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCTTATC
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACACTA-CTCTCATATC
* * *
72894549 AATGTCGATGCCATGTTCCAAACATGGTCTTACA
1 GATGCCGATGCCATGTCCCAAACATGGTCTTACA
72894583 GTGGATCACA
Statistics
Matches: 255, Mismatches: 60, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
47 1 0.00
48 216 0.85
49 3 0.01
50 35 0.14
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (47 bp):
GATGCCGATGCCATGTCCCAAACATGGTCTTACACTACTCTCATATC
Done.