Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 245 of 378
Found at i:72894416 original size:96 final size:96
Alignment explanation
Indices: 72894216--72894594 Score: 483
Period size: 96 Copynumber: 3.9 Consensus size: 96
72894206 GGTAAGATGT
* ** * *
72894216 CGATTCCATGTCCCAAACATGGTCTTACACT-GACTCTCATATATCAATATCGATTCTATGTTCC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTC--ATATCAATGCCGATGCCATGTTCC
* * * *
72894280 AAACATGGTCTTACACTAGCCCACTTGTCGAGGC
63 AAACATGGTCTTACACTGGCTCACATATCGAGGC
* * *
72894314 CGATGCCATGTCCCAAACATAGTCTTACACTCA-CTCTCATATCGATGCCGATGCCATGCTCCAA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-AGCTCTCATATCAATGCCGATGCCATGTTCCAA
* *
72894378 ACATGGTCTTATATTGGCTCACATATCGAGGC
65 ACATGGTCTTACACTGGCTCACATATCGAGGC
* * * *
72894410 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATATCAATGCCAATGCCATGTTTCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
72894475 CATGGTCTTACACTGGCTCACATGTCGAGGG
66 CATGGTCTTACACTGGCTCACATATCGAGGC
* * *
72894506 CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCTTATCAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
72894571 CATGGTCTTACAGTGGATCACATA
66 CATGGTCTTACACTGGCTCACATA
72894595 ACCCTAATGT
Statistics
Matches: 243, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
95 1 0.00
96 208 0.86
98 34 0.14
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:72894733 original size:21 final size:19
Alignment explanation
Indices: 72894692--72894734 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
72894682 AACAAAATCG
* *
72894692 ATAATTTCATGCAATATCA
1 ATAATTTAATGCAATAACA
72894711 ATAATTTAATGCATAATAACA
1 ATAATTTAATGC--AATAACA
72894732 ATA
1 ATA
72894735 GAGTTGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (19 bp):
ATAATTTAATGCAATAACA
Found at i:72899448 original size:15 final size:15
Alignment explanation
Indices: 72899428--72899479 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
72899418 ACTACAAAAC
72899428 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
72899443 ATTTATAATAGTAATAAAT
1 ATTTAT--TATTAAT--AT
*
72899462 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
72899477 ATT
1 ATT
72899480 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:72899543 original size:16 final size:16
Alignment explanation
Indices: 72899512--72899548 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
72899502 ATGTGAATAA
72899512 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
72899528 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
72899544 TATTA
1 TATTA
72899549 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:72916819 original size:13 final size:13
Alignment explanation
Indices: 72916801--72916827 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72916791 CACCACATAG
72916801 TGTATAGTTTTAC
1 TGTATAGTTTTAC
72916814 TGTATAGTTTTAC
1 TGTATAGTTTTAC
72916827 T
1 T
72916828 CAATTGTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (13 bp):
TGTATAGTTTTAC
Found at i:72917301 original size:3 final size:3
Alignment explanation
Indices: 72917293--72917327 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
72917283 CCATGGTGAA
72917293 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
72917328 CATCATTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:72921898 original size:33 final size:33
Alignment explanation
Indices: 72921855--72921920 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
72921845 TAGTGAAAGA
*
72921855 AAGAACAGGGGCTTGATGGATATGGCCAGGTGC
1 AAGAACAGGGGCTTGATGGATATGGCCAAGTGC
*
72921888 AAGAATAGGGGCTTGATGGATATGGCCAAGTGC
1 AAGAACAGGGGCTTGATGGATATGGCCAAGTGC
72921921 CTATTATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.14, G:0.38, T:0.20
Consensus pattern (33 bp):
AAGAACAGGGGCTTGATGGATATGGCCAAGTGC
Found at i:72929097 original size:11 final size:10
Alignment explanation
Indices: 72929066--72929100 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
72929056 ATGAGGAAAG
72929066 AAATAAAATC
1 AAATAAAATC
*
72929076 AAATCAAATC
1 AAATAAAATC
72929086 ACAATAAAATC
1 A-AATAAAATC
72929097 AAAT
1 AAAT
72929101 CCCTAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (10 bp):
AAATAAAATC
Found at i:72930024 original size:82 final size:83
Alignment explanation
Indices: 72929878--72930046 Score: 304
Period size: 82 Copynumber: 2.0 Consensus size: 83
72929868 TCAAGGATAT
72929878 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
*
72929943 ATCTACCTTAAATCATTA
66 AACTACCTTAAATCATTA
*
72929961 ATTT-CTCTTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
*
72930025 AACTACCTTAAATCATTC
66 AACTACCTTAAATCATTA
72930043 ATTT
1 ATTT
72930047 GAAAATAAGT
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
82 79 0.95
83 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (83 bp):
ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
AACTACCTTAAATCATTA
Found at i:72936175 original size:16 final size:16
Alignment explanation
Indices: 72936163--72936193 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72936153 TACAAGATCT
72936163 TAATATTAGAAGATTA
1 TAATATTAGAAGATTA
*
72936179 TAATCTTAGAAGATT
1 TAATATTAGAAGATT
72936194 TGATTTTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.13, T:0.39
Consensus pattern (16 bp):
TAATATTAGAAGATTA
Found at i:72939491 original size:2 final size:2
Alignment explanation
Indices: 72939484--72939520 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
72939474 ACACAAATAC
72939484 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72939521 AGTTAAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:72941784 original size:31 final size:31
Alignment explanation
Indices: 72941749--72941812 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72941739 TCGGTCGTGC
* *
72941749 TCACTGTTGTTGTCCGCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
72941780 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
72941811 TC
1 TC
72941813 TTTATTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.11, T:0.53
Consensus pattern (31 bp):
TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
Found at i:72947504 original size:21 final size:22
Alignment explanation
Indices: 72947467--72947507 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
72947457 TAGAAGATCC
72947467 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
72947489 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
72947508 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Found at i:72953826 original size:25 final size:26
Alignment explanation
Indices: 72953763--72953828 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
72953753 CAAGAGCGTT
*
72953763 CCGTTATTTAGCTAT-TATGAGCATC
1 CCGTTATTTAGCTCTCTATGAGCATC
* * * *
72953788 CCGATATATGGCTCTCT-TGAGCTTC
1 CCGTTATTTAGCTCTCTATGAGCATC
72953813 CCGTTATTTAGCTCTC
1 CCGTTATTTAGCTCTC
72953829 ACGAGGTTCT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (26 bp):
CCGTTATTTAGCTCTCTATGAGCATC
Found at i:72953877 original size:25 final size:25
Alignment explanation
Indices: 72953795--72953974 Score: 100
Period size: 25 Copynumber: 7.3 Consensus size: 25
72953785 ATCCCGATAT
* *
72953795 ATGGCTCTCTTGAGCTTCCCG-TTA
1 ATGGCTCTCATGAGCTTCTCGATTA
* * * *
72953819 TTTAGCTCTCACGAGGTTCTCGA-TA
1 -ATGGCTCTCATGAGCTTCTCGATTA
* *
72953844 ATTGACTCTCATGAACTTCTCGATTA
1 A-TGGCTCTCATGAGCTTCTCGATTA
** * *
72953870 ATGGCTCTCCGGAGCTTC-CCAATA
1 ATGGCTCTCATGAGCTTCTCGATTA
* * *
72953894 TTGGCTCGCATGAGCTTCTTGATT-
1 ATGGCTCTCATGAGCTTCTCGATTA
* * *
72953918 ACGGCTCTTATGAGCTTCCCG-TTA
1 ATGGCTCTCATGAGCTTCTCGATTA
* * * *
72953942 CATGGCTCACATGAGCTTCCCGTTTT
1 -ATGGCTCTCATGAGCTTCTCGATTA
72953968 ATGGCTC
1 ATGGCTC
72953975 GAAAGAACTT
Statistics
Matches: 113, Mismatches: 35, Indels: 14
0.70 0.22 0.09
Matches are distributed among these distances:
23 2 0.02
24 33 0.29
25 73 0.65
26 5 0.04
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (25 bp):
ATGGCTCTCATGAGCTTCTCGATTA
Found at i:72965105 original size:47 final size:47
Alignment explanation
Indices: 72964988--72965118 Score: 190
Period size: 47 Copynumber: 2.8 Consensus size: 47
72964978 GTGCGAATGA
* * *
72964988 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAAGGAGAAGT
* * * *
72965036 TACCTTGATTTAGCTACAGGCCATGGTATAGGTACTCCAGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
72965083 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
72965119 TATTGATTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 42 0.57
48 32 0.43
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
Found at i:72965136 original size:47 final size:47
Alignment explanation
Indices: 72964985--72965137 Score: 154
Period size: 47 Copynumber: 3.2 Consensus size: 47
72964975 TGAGTGCGAA
* *
72964985 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAG
1 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT--ATGA-TAG
* * * *
72965035 T--TACCTTGATTTAGCTACAGGCCATGGTATAGGTACTCCAGGATAAG
1 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACT-TATGAT-AG
*
72965082 T--TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTATTGATTG
1 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTA-TGATAG
72965128 TGAT-CCTTGA
1 TGATACCTTGA
72965138 GTATCTGACT
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
46 3 0.03
47 49 0.56
48 34 0.39
50 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (47 bp):
TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGATAG
Found at i:72969451 original size:15 final size:15
Alignment explanation
Indices: 72969419--72969447 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72969409 ATTTTCTATT
72969419 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
72969434 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
72969448 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:72972001 original size:2 final size:2
Alignment explanation
Indices: 72971994--72972018 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
72971984 ATTGTTTTGG
72971994 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
72972019 CACACATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72976944 original size:49 final size:49
Alignment explanation
Indices: 72976886--72977104 Score: 166
Period size: 49 Copynumber: 4.6 Consensus size: 49
72976876 CGTCAAGGCC
* * *
72976886 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTCG
1 ATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCTGTGCCG
* * * * * * *
72976935 ATGCCATGTCTCAGACAAATCTTACATTGACACACCTCA-A-----GCCG
1 ATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCAT-ATATCTGTGCCG
* * * * * *
72976979 ATGCCATGTCCCATATAGGTCTTACACTAGCT-T-ATATATCTTGAGGCCA
1 ATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATC-TG-TGCCG
* * * *
72977028 ATGCCGTGTCCCAGGCATGTCTTACACTGGCTCTCATATATCGGTGCCG
1 ATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCTGTGCCG
*
72977077 ATGCCATGTCCCAAACAAGTCTTACACT
1 ATGCCATGTCCCAGACAAGTCTTACACT
72977105 AGCACACACA
Statistics
Matches: 124, Mismatches: 35, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
44 26 0.21
49 86 0.69
50 2 0.02
51 7 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCTGTGCCG
Found at i:72978926 original size:47 final size:47
Alignment explanation
Indices: 72978805--72978935 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
72978795 GTGCAAATGA
* * * *
72978805 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTA-CTCAGGGAGAAGT
* * *
72978853 TACCTTGATTTGGCTACGGGCAATGGTATAAGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCAGGGAGAAGT
* * *
72978900 TACCTTGACTTGGTTATGGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACT
72978936 TATTGATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 40 0.56
48 32 0.44
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCAGGGAGAAGT
Found at i:72981858 original size:46 final size:46
Alignment explanation
Indices: 72981808--72981977 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
72981798 TTGAGCATCT
*
72981808 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * * * *
72981854 GAACTCATTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * *
72981901 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*
72981947 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72981978 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.56
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:72981961 original size:93 final size:93
Alignment explanation
Indices: 72981802--72981972 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
72981792 GGATGGTTGA
* * *
72981802 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
*
72981867 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
72981895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
72981960 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72981973 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72982238 original size:19 final size:20
Alignment explanation
Indices: 72982201--72982238 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72982191 ATAAGGTGGT
72982201 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
72982221 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
72982239 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:72989745 original size:40 final size:40
Alignment explanation
Indices: 72989700--72989866 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72989690 CGGAATATAA
72989700 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72989740 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72989780 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72989820 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72989859 CCGGATAT
1 CCGGATAT
72989867 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72989850 original size:80 final size:79
Alignment explanation
Indices: 72989700--72989866 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
72989690 CGGAATATAA
* *
72989700 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
72989765 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
72989780 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
72989842 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
72989859 CCGGATAT
1 CCGGATAT
72989867 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72990715 original size:17 final size:19
Alignment explanation
Indices: 72990692--72990737 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72990682 AAGAAGCATG
72990692 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72990710 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72990728 AATCATGCTC
1 AATCATGCTC
72990738 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72997751 original size:40 final size:40
Alignment explanation
Indices: 72997706--72997872 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72997696 CGGAATATAA
72997706 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72997746 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72997786 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72997826 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72997865 CCGGATAT
1 CCGGATAT
72997873 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72997856 original size:80 final size:79
Alignment explanation
Indices: 72997706--72997872 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
72997696 CGGAATATAA
* *
72997706 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
72997771 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
72997786 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
72997848 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
72997865 CCGGATAT
1 CCGGATAT
72997873 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72998719 original size:17 final size:19
Alignment explanation
Indices: 72998696--72998741 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72998686 AAGAAGCATG
72998696 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72998714 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72998732 AATCATGCTC
1 AATCATGCTC
72998742 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73002830 original size:40 final size:40
Alignment explanation
Indices: 73002785--73002950 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
73002775 CGGAATATAA
73002785 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73002825 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73002865 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73002904 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73002943 CCGGATAT
1 CCGGATAT
73002951 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73002907 original size:39 final size:38
Alignment explanation
Indices: 73002801--73002912 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
73002791 ATAATCACGT
* * *
73002801 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
73002841 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
73002880 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
73002913 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:73002934 original size:79 final size:78
Alignment explanation
Indices: 73002801--73002950 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
73002791 ATAATCACGT
*
73002801 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
73002866 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
73002880 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
73002943 CCGGATAT
64 CCGGATAT
73002951 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:73003797 original size:17 final size:19
Alignment explanation
Indices: 73003774--73003819 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73003764 AAGAAGCATG
73003774 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73003792 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73003810 AATCATGCTC
1 AATCATGCTC
73003820 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73010911 original size:40 final size:40
Alignment explanation
Indices: 73010800--73010950 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
73010790 ATAATCACGT
* * *
73010800 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* **
73010840 GCACGAA-TGCCTTCGGGCCTTAGCCCGGATATAACCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* ** *
73010880 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* *
73010920 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73010951 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 15 0.16
40 78 0.82
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
Found at i:73010934 original size:80 final size:79
Alignment explanation
Indices: 73010800--73010950 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
73010790 ATAATCACGT
*
73010800 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
73010865 CGGATATAACCACTA
65 CGGATATAACCACTA
* * ** * *
73010880 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
73010943 CCGGATAT
64 CCGGATAT
73010951 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAACCACTA
Found at i:73013911 original size:23 final size:23
Alignment explanation
Indices: 73013885--73014001 Score: 92
Period size: 24 Copynumber: 4.9 Consensus size: 23
73013875 GCTTCACGTT
73013885 ATTTGGCTCTCATGAGCTTCCCA
1 ATTTGGCTCTCATGAGCTTCCCA
** *
73013908 ATTTGGCTCTCATGAGCTTTTCG
1 ATTTGGCTCTCATGAGCTTCCCA
* *
73013931 ATTAATGGCTCAC-TAGTGCTTCCCA
1 ATT--TGGCTCTCAT-GAGCTTCCCA
* **
73013956 ATATTGGCTCGCATGAGCTTCCTG
1 AT-TTGGCTCTCATGAGCTTCCCA
* *
73013980 ATTACGGCTCTTATGAGCTTCC
1 ATT-TGGCTCTCATGAGCTTCC
73014002 TTTTGCATGG
Statistics
Matches: 73, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
23 24 0.33
24 32 0.44
25 16 0.22
26 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (23 bp):
ATTTGGCTCTCATGAGCTTCCCA
Found at i:73013940 original size:48 final size:48
Alignment explanation
Indices: 73013888--73014001 Score: 126
Period size: 48 Copynumber: 2.4 Consensus size: 48
73013878 TCACGTTATT
* *
73013888 TGGCTCTCATGAGCTTCCCAAT-TTGGCTCTCATGAGCTT-TTCGATTAA
1 TGGCTCTCATGAGCTTCCCAATATTGGCTCGCATGAGCTTCCT-GATT-A
* *
73013936 TGGCTCAC-TAGTGCTTCCCAATATTGGCTCGCATGAGCTTCCTGATTA
1 TGGCTCTCAT-GAGCTTCCCAATATTGGCTCGCATGAGCTTCCTGATTA
* *
73013984 CGGCTCTTATGAGCTTCC
1 TGGCTCTCATGAGCTTCC
73014002 TTTTGCATGG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
47 1 0.02
48 31 0.57
49 21 0.39
50 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (48 bp):
TGGCTCTCATGAGCTTCCCAATATTGGCTCGCATGAGCTTCCTGATTA
Found at i:73019460 original size:68 final size:64
Alignment explanation
Indices: 73019246--73019467 Score: 234
Period size: 67 Copynumber: 3.4 Consensus size: 64
73019236 AATAATTTTG
* *
73019246 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT-TATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
** * * * * * *
73019309 GCTCTCTTGTTTACATGGTGTCCTTCACCT-GTAACCACACATGCAACCTAGCTACATCTATCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGT-ATCACCCATGCGACCTAGCTACTTCTATCTC
73019373 GTA
62 GTA
73019376 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTC-T-A--TCT
73019440 CGTA
61 CGTA
* *
73019444 GCTCTTTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
73019468 TCTCGTATTA
Statistics
Matches: 128, Mismatches: 19, Indels: 19
0.77 0.11 0.11
Matches are distributed among these distances:
63 18 0.14
64 26 0.20
65 5 0.04
66 24 0.19
67 27 0.21
68 27 0.21
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.33
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
Found at i:73019493 original size:68 final size:68
Alignment explanation
Indices: 73019246--73019495 Score: 184
Period size: 68 Copynumber: 3.8 Consensus size: 68
73019236 AATAATTTTG
* * * *
73019246 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT--T-A--TCT
1 GCTCTCTTGT-CTACATGGTATACACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCT
73019305 CGTA
65 CGTA
* * * * * * *
73019309 GCTCTCTTGTTTACATGGTGTCCTTCACCT-GTAACCACACATGCAACCTAGCTACATC-T-A--
1 GCTCTCTTGTCTACAT-G-GT-ATACACATAGT-ATCACACATGCGACCTAGCTACTTCATAATG
73019369 TCTCGTA
62 TCTCGTA
* *
73019376 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCTC
1 GCTCTCTTGTCTACATGGTATACACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
73019441 GTA
66 GTA
* * * * *
73019444 GCTCTTTTGTAC-ACATGGTATACATC-TCGTATTACACATGTGACGTAGCTAC
1 GCTCTCTTGT-CTACATGGTATACA-CATAGTATCACACATGCGACCTAGCTAC
73019496 ATACCATCTG
Statistics
Matches: 149, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
63 14 0.09
64 27 0.18
65 9 0.06
66 25 0.17
67 24 0.16
68 48 0.32
69 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (68 bp):
GCTCTCTTGTCTACATGGTATACACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
GTA
Found at i:73020739 original size:108 final size:108
Alignment explanation
Indices: 73020550--73020764 Score: 385
Period size: 108 Copynumber: 2.0 Consensus size: 108
73020540 TTTCGAGATG
* * *
73020550 TTACACTTTTAATCCTAGCCATTTATGTACTTTAATCTATACCATTAATTTTGGAGGGGTTCAAC
1 TTACACTTTTAATCCTAGCAACTGATGTACTTTAATCTATACCATTAATTTTGGAGGGGTTCAAC
*
73020615 TATAAATAGAGGCCTCTCTCCCTTATTGTAATTCATTCATTGT
66 TATAAATAGAGGCCTCTCCCCCTTATTGTAATTCATTCATTGT
*
73020658 TTACACTTTTAATCCTAGCAACTGATGTACTTTAATCTATACCATTAATTTTGGAGGGGTTTAAC
1 TTACACTTTTAATCCTAGCAACTGATGTACTTTAATCTATACCATTAATTTTGGAGGGGTTCAAC
73020723 TATAAATAGAGGCCTCTCCCCCTTATTGTAATTCATTCATTG
66 TATAAATAGAGGCCTCTCCCCCTTATTGTAATTCATTCATTG
73020765 AGTAATAGAA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 102 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (108 bp):
TTACACTTTTAATCCTAGCAACTGATGTACTTTAATCTATACCATTAATTTTGGAGGGGTTCAAC
TATAAATAGAGGCCTCTCCCCCTTATTGTAATTCATTCATTGT
Found at i:73021507 original size:27 final size:27
Alignment explanation
Indices: 73021435--73021495 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
73021425 TATTTTCCCC
* *
73021435 AAATTTTATCAA-GGTTAAAATTGTCA
1 AAATTTTACCAAGGGTAAAAATTGTCA
*
73021461 AACTTTTACCAAGGGTAAAAATTGTCA
1 AAATTTTACCAAGGGTAAAAATTGTCA
73021488 AAATTTTA
1 AAATTTTA
73021496 TTTAGGGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (27 bp):
AAATTTTACCAAGGGTAAAAATTGTCA
Found at i:73022819 original size:16 final size:16
Alignment explanation
Indices: 73022798--73022831 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
73022788 ATCTTTGAGC
73022798 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
73022814 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
73022830 TT
1 TT
73022832 TTCAATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.24, T:0.53
Consensus pattern (16 bp):
TTGTGTTAGACTATGT
Found at i:73022900 original size:20 final size:19
Alignment explanation
Indices: 73022851--73022913 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
73022841 TTTATAATAA
* *
73022851 TTTATAAATTTTTATGATT
1 TTTATAAATTTTAATAATT
*
73022870 TTTAATTAATTTCTAATAATT
1 TTT-ATAAATTT-TAATAATT
*
73022891 TTTATAAA-TTTAAT-TTT
1 TTTATAAATTTTAATAATT
73022908 TTTATA
1 TTTATA
73022914 TTTTTATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 8 0.22
18 4 0.11
19 5 0.14
20 11 0.30
21 9 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTATAAATTTTAATAATT
Found at i:73022911 original size:17 final size:18
Alignment explanation
Indices: 73022889--73022930 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
73022879 TTTCTAATAA
73022889 TTTTTATAAATTTA-ATT
1 TTTTTATAAATTTATATT
**
73022906 TTTTTATATTTTTATATT
1 TTTTTATAAATTTATATT
73022924 TTTTTAT
1 TTTTTAT
73022931 GATTGGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTATAAATTTATATT
Found at i:73026758 original size:13 final size:13
Alignment explanation
Indices: 73026739--73026804 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
73026729 TAGATTTTTT
73026739 CTAAATATTATCA
1 CTAAATATTATCA
* *
73026752 TTAAATA--A-CC
1 CTAAATATTATCA
73026762 CTAAATATTATCA
1 CTAAATATTATCA
*
73026775 CTAAATA--AT-T
1 CTAAATATTATCA
73026785 CTAAATATTATCA
1 CTAAATATTATCA
73026798 CTAAATA
1 CTAAATA
73026805 ATTCAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
10 14 0.34
11 3 0.07
12 3 0.07
13 21 0.51
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:73026806 original size:23 final size:23
Alignment explanation
Indices: 73026737--73026813 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
73026727 GTTAGATTTT
*
73026737 TTCTAAATATTATCATTAAATAA
1 TTCTAAATATTATCACTAAATAA
**
73026760 CCCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
73026783 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
73026806 TTCAAAAT
1 TTCTAAAT
73026814 TTAAAAATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:73029543 original size:18 final size:18
Alignment explanation
Indices: 73029493--73029543 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
73029483 AATGGTTTAT
*
73029493 GAGTTGTCAGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
73029511 GAGTTGTTGGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
73029529 GAGTTGTTAGTTTAG
1 GAGTTGTTAGCTTAG
73029544 CCCCCTGTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.06, G:0.39, T:0.39
Consensus pattern (18 bp):
GAGTTGTTAGCTTAGTGG
Found at i:73031549 original size:20 final size:20
Alignment explanation
Indices: 73031512--73031551 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73031502 TATAGGCAGC
*
73031512 CAAATATATCAATTCATACA
1 CAAATATATCAATCCATACA
73031532 CAAATCATATC-ATCCATACA
1 CAAAT-ATATCAATCCATACA
73031552 TAACCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (20 bp):
CAAATATATCAATCCATACA
Found at i:73032303 original size:43 final size:42
Alignment explanation
Indices: 73032233--73032338 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
73032223 CAATGCCAAC
*** *
73032233 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATTGATGC-CATT
1 GTCCCAGACAG-GGTCTTACACAAAATCAAATA-CGATGCTCA-T
* *
73032276 GTCCCAGACAGGGTCTTACACAAAATCATATACGATGCTGAT
1 GTCCCAGACAGGGTCTTACACAAAATCAAATACGATGCTCAT
*
73032318 GTCCCAGACATGGTCTTACAC
1 GTCCCAGACAGGGTCTTACAC
73032339 GTAAATCTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 26 0.48
43 27 0.50
44 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACAAAATCAAATACGATGCTCAT
Found at i:73034101 original size:17 final size:18
Alignment explanation
Indices: 73034065--73034105 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
73034055 CAAAAATACA
73034065 AAAATAAATTGAAAAAAT
1 AAAATAAATTGAAAAAAT
* *
73034083 AAAATAAA-TGGATAAAT
1 AAAATAAATTGAAAAAAT
73034100 AAAATA
1 AAAATA
73034106 TTTTTTAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAATAAATTGAAAAAAT
Found at i:73034986 original size:23 final size:23
Alignment explanation
Indices: 73034960--73035010 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
73034950 TAAACAACCT
*
73034960 TAAATATTATCACTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
73034983 TAAATATCATCGCTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
73035006 AAAAT
1 TAAAT
73035011 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAATATCATCACTAAATAATTC
Found at i:73035381 original size:19 final size:22
Alignment explanation
Indices: 73035349--73035388 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
73035339 TTTTTAATTG
73035349 ATTAATGAATTTTTAA-AAAAT
1 ATTAATGAATTTTTAACAAAAT
73035370 ATTAAT-AA-TTTTAACAAAA
1 ATTAATGAATTTTTAACAAAA
73035389 ACTAATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
ATTAATGAATTTTTAACAAAAT
Found at i:73035388 original size:21 final size:21
Alignment explanation
Indices: 73035349--73035389 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73035339 TTTTTAATTG
*
73035349 ATTAATGAATTTTTAAAAAAT
1 ATTAATGAATTTTAAAAAAAT
73035370 ATTAAT-AATTTTAACAAAAA
1 ATTAATGAATTTTAA-AAAAA
73035390 CTAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATTAATGAATTTTAAAAAAAT
Found at i:73041918 original size:13 final size:13
Alignment explanation
Indices: 73041902--73041926 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73041892 ATGATAACGT
73041902 ATAATAATGAGTG
1 ATAATAATGAGTG
73041915 ATAATAATGAGT
1 ATAATAATGAGT
73041927 AATGAAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (13 bp):
ATAATAATGAGTG
Found at i:73042240 original size:23 final size:22
Alignment explanation
Indices: 73042189--73042240 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
73042179 CATATGCATG
*
73042189 GTATATATATAAAAATGTATAA
1 GTATATATATAAAAATGTACAA
*
73042211 GTA-ATATAATAAAAAT-TACATC
1 GTATATAT-ATAAAAATGTACA-A
73042233 GTATATAT
1 GTATATAT
73042241 GTGTTAGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 7 0.28
22 14 0.56
23 4 0.16
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
GTATATATATAAAAATGTACAA
Found at i:73044292 original size:21 final size:21
Alignment explanation
Indices: 73044267--73044312 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
73044257 GTTTTAGGGT
*
73044267 TAGGTTTATTTAGGTTTGGGC
1 TAGGTTTATTTAGGTTTAGGC
73044288 TAGGTTTATTTAGGTTTAGGC
1 TAGGTTTATTTAGGTTTAGGC
73044309 TAGG
1 TAGG
73044313 GGCCAAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (21 bp):
TAGGTTTATTTAGGTTTAGGC
Found at i:73046945 original size:79 final size:82
Alignment explanation
Indices: 73046805--73046989 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
73046795 TCGAATGATG
* * *
73046805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
73046869 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
73046885 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
73046947 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
73046965 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73046990 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:73046997 original size:40 final size:40
Alignment explanation
Indices: 73046806--73046997 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
73046796 CGAATGATGT
* * * * *
73046806 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
73046846 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
73046886 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
73046925 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
73046965 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
73046998 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:73047020 original size:79 final size:79
Alignment explanation
Indices: 73046805--73047022 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
73046795 TCGAATGATG
* * * * ** *
73046805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
73046868 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
73046885 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
73046950 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
73046965 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
73047023 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:73054994 original size:79 final size:82
Alignment explanation
Indices: 73054854--73055038 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
73054844 TCGAATGATG
* * *
73054854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
73054918 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
73054934 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
73054996 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
73055014 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73055039 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:73055046 original size:40 final size:40
Alignment explanation
Indices: 73054855--73055046 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
73054845 CGAATGATGT
* * * * *
73054855 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
73054895 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
73054935 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
73054974 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
73055014 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
73055047 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:73055069 original size:79 final size:79
Alignment explanation
Indices: 73054854--73055071 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
73054844 TCGAATGATG
* * * * ** *
73054854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
73054917 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
73054934 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
73054999 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
73055014 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
73055072 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:73058126 original size:30 final size:30
Alignment explanation
Indices: 73058090--73058151 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
73058080 GTTTCACCAC
73058090 ATGATTAGTATTTGTAGTACGATTTATACA
1 ATGATTAGTATTTGTAGTACGATTTATACA
73058120 ATGATTAGTATTTGTAGTACGATTTATACA
1 ATGATTAGTATTTGTAGTACGATTTATACA
73058150 AT
1 AT
73058152 CACCCTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (30 bp):
ATGATTAGTATTTGTAGTACGATTTATACA
Found at i:73062394 original size:736 final size:736
Alignment explanation
Indices: 73060979--73062452 Score: 2493
Period size: 736 Copynumber: 2.0 Consensus size: 736
73060969 TTACATTAAC
* *
73060979 TCGATCTATGGATTCCCTTATTAGGTTTCACCCTAATTCGGCAAAATCTTGTCACCCTATCTCTA
1 TCGACCTATGGATTCCCTTATTAGGTTTCACCCTAATTCGGCAAAATCTTGTCACACTATCTCTA
* * *
73061044 GGTGTGCAATCAACTCCGCTCAATTATGCTAGATCTACTCATAGACAGGGACTTTTGCTCCTCTG
66 GGCGTGCAATCAACTCCGCTCAATTATGCTAGATCTACTCATAGACAAGGACTTCTGCTCCTCTG
* *
73061109 AATAAGCACATCAATACTTGAATCAATATCCTGGAATATTAAAACAAGAATTAAGAGCACATAAT
131 AATAAGCACATCAATACTTGAATCAATATCCTGAAATATTAAAACAAGAATTAAGAGCACATAAA
*
73061174 TAAGAACAAGTCATATATTTATCATACAATTCAGAACATAATAACAAGATCCATCTTAGGTTTCA
196 TAAGAACAAGTCAAATATTTATCATACAATTCAGAACATAATAACAAGATCCATCTTAGGTTTCA
73061239 TTCCCCTTAGGTATTTAGCAGATTTAGTTCATATTTATAAAAGGAAACATCTCAAAAGAATAAAG
261 TTCCCCTTAGGTATTTAGCAGATTTAGTTCATATTTATAAAAGGAAACATCTCAAAAGAATAAAG
*
73061304 ATAACAAAACATAAAGAAAACCAAAAACTCCTGAAGGAAATTGAAGGGAGATCTTCAGTTTTAAA
326 ATAACAAAACATAAAGAAAACCAAAAACTCCTGAAGGAAATTGAAGGGAGATCTCCAGTTTTAAA
73061369 GATGAATCCGACTACTAAGATGGATCAATCAACTTCTTCAAGTAATTCCTTGCCTCCTACCCTCT
391 GATGAATCCGACTACTAAGATGGATCAATCAACTTCTTCAAGTAATTCCTTGCCTCCTACCCTCT
* * *
73061434 GTGTCCTCTCTAAGTGCCTCCTCTGGTTTTTAAATAGACTTTTGAATGCTTTAAAGCCCTTAAGA
456 GTGTCCTCTCTAAGTGCCTCATCTGGTTTTTAAATAGACTTTTGAATGCCTTAAAGCCCTCAAGA
73061499 GAGGCATTTTCCGAGCAGAACTAAACTTGGGCTCGACATGGACACACCCATGTGCGATTTCTTCA
521 GAGGCATTTTCCGAGCAGAACTAAACTTGGGCTCGACATGGACACACCCATGTGCGATTTCTTCA
* *
73061564 ATCCATGTTCAAGGCTTTTAAATAGACATGGCCGTGTGATCTACCCGTGTAAGTCGTGCTCGATT
586 ATCCATGTTCAAGGCTTTTAAATAGACACGGCCGTGTGATCTACCCGTGTAAGTCGTGCTCAATT
*
73061629 CTACTAAAAAGACACGACCATGTGGTCTACCCGTGTAAGGAAGTCCAAGCCGTGTTAGAGCCTGT
651 CTACTAAAAAGACACGACCATGTGGTCTACCCGTGCAAGGAAGTCCAAGCCGTGTTAGAGCCTGT
* *
73061694 TAACACTGCACTAGCATGTGG
716 TAACACTACACGAGCATGTGG
73061715 TCGACCTATGGATTCCCTTATTAGGTTTCACCCTAATTCGGCAAAATCTTGTCACACTATCTCTA
1 TCGACCTATGGATTCCCTTATTAGGTTTCACCCTAATTCGGCAAAATCTTGTCACACTATCTCTA
*
73061780 GGCGTGCAATCAACTCCGCTCAATTATGCTAGATCTACTCTTAGACAAGGACTTCTGCTCCTCTG
66 GGCGTGCAATCAACTCCGCTCAATTATGCTAGATCTACTCATAGACAAGGACTTCTGCTCCTCTG
** *
73061845 AATAAGCACATCAATACTTGAATCAATATTTTGAAA-ATTTAAAA-AAGAATTAAGAGTACATAA
131 AATAAGCACATCAATACTTGAATCAATATCCTGAAATA-TTAAAACAAGAATTAAGAGCACATAA
* **
73061908 ATAAGAACAAGTCAAATATTTATCATACAATTTAGAACATAATAACAAGATCTGTCTTAGGTTTC
195 ATAAGAACAAGTCAAATATTTATCATACAATTCAGAACATAATAACAAGATCCATCTTAGGTTTC
* ** *
73061973 ATTCCCTTTAGGTATTTAGTGGATTTAGTTCATATTTATGAAAGGAAACATCTCAAAAGAATAAA
260 ATTCCCCTTAGGTATTTAGCAGATTTAGTTCATATTTATAAAAGGAAACATCTCAAAAGAATAAA
* * *
73062038 TATAACAAAACATAAAGAAAACCCAAAACTCCTGAAGGAAATTGAAGGGAGATCTCCAGTTTTGA
325 GATAACAAAACATAAAGAAAACCAAAAACTCCTGAAGGAAATTGAAGGGAGATCTCCAGTTTTAA
* * *
73062103 AGATGAATCCGACTTCTAAGATGGATCAATCAGCTTTCTTCGAGTAATTCCTTGCCTCCTACCCT
390 AGATGAATCCGACTACTAAGATGGATCAATCAAC-TTCTTCAAGTAATTCCTTGCCTCCTACCCT
* *
73062168 CTGTGTCCTTTCTAAGTGGCTCATCTGGTTTTTAAATAGACTTTTGAATGCCTTAAAGCCCTCAA
454 CTGTGTCCTCTCTAAGTGCCTCATCTGGTTTTTAAATAGACTTTTGAATGCCTTAAAGCCCTCAA
* * * * *
73062233 GAGAGGGATTTTTCGAGTAGAACTAAACTTGGGCTCGACATGGACACGCCCGTGTGCGATTTCTT
519 GAGAGGCATTTTCCGAGCAGAACTAAACTTGGGCTCGACATGGACACACCCATGTGCGATTTCTT
* *
73062298 CAATCCGTGTTCAAGGCTTTTCAATAGACACGGCCGTGTGATCTACCCGTGTAAGTCGTGCTCAA
584 CAATCCATGTTCAAGGCTTTTAAATAGACACGGCCGTGTGATCTACCCGTGTAAGTCGTGCTCAA
* * *
73062363 TTCTGCTAAAAAGACACGGCCCTGTGGTCTACCCGTGCAAGGAAGTCCAAGCCGTGTTAGAGCCT
649 TTCTACTAAAAAGACACGACCATGTGGTCTACCCGTGCAAGGAAGTCCAAGCCGTGTTAGAGCCT
*
73062428 GTTAACACTACACGGGCATGTGG
714 GTTAACACTACACGAGCATGTGG
73062451 TC
1 TC
73062453 TGCCCGTGTA
Statistics
Matches: 689, Mismatches: 47, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
735 233 0.34
736 456 0.66
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (736 bp):
TCGACCTATGGATTCCCTTATTAGGTTTCACCCTAATTCGGCAAAATCTTGTCACACTATCTCTA
GGCGTGCAATCAACTCCGCTCAATTATGCTAGATCTACTCATAGACAAGGACTTCTGCTCCTCTG
AATAAGCACATCAATACTTGAATCAATATCCTGAAATATTAAAACAAGAATTAAGAGCACATAAA
TAAGAACAAGTCAAATATTTATCATACAATTCAGAACATAATAACAAGATCCATCTTAGGTTTCA
TTCCCCTTAGGTATTTAGCAGATTTAGTTCATATTTATAAAAGGAAACATCTCAAAAGAATAAAG
ATAACAAAACATAAAGAAAACCAAAAACTCCTGAAGGAAATTGAAGGGAGATCTCCAGTTTTAAA
GATGAATCCGACTACTAAGATGGATCAATCAACTTCTTCAAGTAATTCCTTGCCTCCTACCCTCT
GTGTCCTCTCTAAGTGCCTCATCTGGTTTTTAAATAGACTTTTGAATGCCTTAAAGCCCTCAAGA
GAGGCATTTTCCGAGCAGAACTAAACTTGGGCTCGACATGGACACACCCATGTGCGATTTCTTCA
ATCCATGTTCAAGGCTTTTAAATAGACACGGCCGTGTGATCTACCCGTGTAAGTCGTGCTCAATT
CTACTAAAAAGACACGACCATGTGGTCTACCCGTGCAAGGAAGTCCAAGCCGTGTTAGAGCCTGT
TAACACTACACGAGCATGTGG
Found at i:73063271 original size:2 final size:2
Alignment explanation
Indices: 73063264--73063300 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73063254 GAATTAGTAC
73063264 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73063301 GTATTAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73067914 original size:39 final size:39
Alignment explanation
Indices: 73067843--73068057 Score: 229
Period size: 40 Copynumber: 5.4 Consensus size: 39
73067833 CTCGATTGTA
* * *
73067843 TTCGGGACATAGCCCGG-TTATAGTAATTCGCACAATTGCC
1 TTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCC
* *
73067883 TTCGGGAATTAGCCGGATTTAGTAACTCGCACAAATGCC
1 TTCGGGACTTACCCGGATTTAGTAACTCGCACAAATGCC
* *
73067922 TTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCC
1 TTCGGGACTT-ACCCGGATTTAGTAACTCGCACAAATGCC
* * *
73067962 TTC-GGACTTAACCGGTTTTGGTAACTCGCACAAATGCC
1 TTCGGGACTTACCCGGATTTAGTAACTCGCACAAATGCC
* * * *
73068000 TTCGGGAATTGACCCGGA-TTAGTCACTTAGCACAAAAGCC
1 TTCGGGACTT-ACCCGGATTTAGTAAC-TCGCACAAATGCC
73068040 TTCGGGACTTAGCCCGGA
1 TTCGGGACTTA-CCCGGA
73068058 CACATTCGAT
Statistics
Matches: 151, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 31 0.21
39 49 0.32
40 71 0.47
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
TTCGGGACTTACCCGGATTTAGTAACTCGCACAAATGCC
Found at i:73067986 original size:38 final size:39
Alignment explanation
Indices: 73067856--73068050 Score: 223
Period size: 39 Copynumber: 5.0 Consensus size: 39
73067846 GGGACATAGC
* * * * *
73067856 CCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAG
1 CCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
73067895 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
73067934 CCCGGTTTTGGTAACTCGCACAAATGCCTTC-GGACTTAA
1 -CCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * *
73067973 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGAC
1 CCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTT-AA
* * * *
73068013 CCGG-ATTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 CCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTA
73068051 GCCCGGACAC
Statistics
Matches: 136, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
38 30 0.22
39 53 0.39
40 53 0.39
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:73076143 original size:41 final size:40
Alignment explanation
Indices: 73075957--73076155 Score: 236
Period size: 40 Copynumber: 5.0 Consensus size: 40
73075947 AGTCCGGTTA
* * * *
73075957 TAGTAATTCGCACAATTGCCTTCGGGAATTAGCCTGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
* *
73075997 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
* * *
73076037 TTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
* * *
73076077 TGGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
* * * * *
73076117 TAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGAATTAACCCGGA
73076156 CACCATTCGA
Statistics
Matches: 138, Mismatches: 20, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 113 0.82
41 25 0.18
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
Found at i:73081344 original size:13 final size:13
Alignment explanation
Indices: 73081312--73081336 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73081302 TTGACTTGAT
73081312 CCGTGTGACACGC
1 CCGTGTGACACGC
73081325 CCGTGTGACACG
1 CCGTGTGACACG
73081337 TCTGTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
CCGTGTGACACGC
Found at i:73081938 original size:32 final size:32
Alignment explanation
Indices: 73081805--73081941 Score: 150
Period size: 32 Copynumber: 4.2 Consensus size: 32
73081795 TGTACGTTTC
* * **
73081805 TTTCTAAGTGGTACACACAAAGTATACCTTTCCT
1 TTTC-AAGT-GTACACACAAAGTGTACATAACCT
* * *
73081839 TTTCATA-TGGTATACACAAAGTATACCTAACCT
1 TTTCA-AGT-GTACACACAAAGTGTACATAACCT
*
73081872 TTCCAAGTGTACACACAAAGTGTACATAACCT
1 TTTCAAGTGTACACACAAAGTGTACATAACCT
*
73081904 TTTCAAGTGTACACATAAAGTGTACATAACCT
1 TTTCAAGTGTACACACAAAGTGTACATAACCT
73081936 TTTCAA
1 TTTCAA
73081942 ATTGTACCAT
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
32 58 0.63
33 29 0.32
34 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (32 bp):
TTTCAAGTGTACACACAAAGTGTACATAACCT
Found at i:73081948 original size:65 final size:65
Alignment explanation
Indices: 73081804--73081948 Score: 150
Period size: 65 Copynumber: 2.2 Consensus size: 65
73081794 GTGTACGTTT
* * ** * *
73081804 CTTTCTAAGTGGTACACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACCTAA
1 CTTTCAAAGT-GTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAA
73081869 C
65 C
* * * *
73081870 CTTTCCAAGTGTACACACAAAGTGTACATAACCTTTTCA-A-GTGTACACATAAAGTGTACATAA
1 CTTTCAAAGTGTACACACAAAGTATACATAACCTTTTCATATG-GTACACACAAAGTATACATAA
73081933 C
65 C
*
73081934 CTTTTCAAATTGTAC
1 C-TTTCAAAGTGTAC
73081949 CATTTGGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
63 1 0.02
64 20 0.30
65 36 0.55
66 9 0.14
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.32
Consensus pattern (65 bp):
CTTTCAAAGTGTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAAC
Found at i:73088316 original size:32 final size:32
Alignment explanation
Indices: 73088230--73088319 Score: 135
Period size: 32 Copynumber: 2.8 Consensus size: 32
73088220 CATATGGTAT
* * *
73088230 ACACAAAGTATACCTAACCTTTCCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
* *
73088262 ACACAAATTGTACATAACCTTTTCAAGTTTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
73088294 ACACAAAGTGTACATAACCTTTTCAA
1 ACACAAAGTGTACATAACCTTTTCAA
73088320 ATTGTACCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (32 bp):
ACACAAAGTGTACATAACCTTTTCAAGTGTAC
Found at i:73091546 original size:40 final size:40
Alignment explanation
Indices: 73091486--73091669 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
73091476 TATTCGAATG
*
73091486 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
73091526 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
73091566 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
73091606 ATATCAGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
73091646 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
73091670 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:73091619 original size:80 final size:80
Alignment explanation
Indices: 73091486--73091669 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
73091476 TATTCGAATG
* * * *
73091486 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCAGGACTAAG-TCCCGAAGGC
* *
73091550 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * *
73091566 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCAGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCAGGACTAAGTCCCGAAGGCA
*
73091631 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
73091646 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73091670 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCAGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:73094220 original size:31 final size:31
Alignment explanation
Indices: 73094185--73094243 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
73094175 TACTTTCCAA
73094185 ATTTTAAAATTTAAATTCAATTGTTAATCAG
1 ATTTTAAAATTTAAATTCAATTGTTAATCAG
73094216 ATTTTAAAATTTAAATTCAATTGTTAAT
1 ATTTTAAAATTTAAATTCAATTGTTAAT
73094244 AATGTTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (31 bp):
ATTTTAAAATTTAAATTCAATTGTTAATCAG
Found at i:73098597 original size:18 final size:19
Alignment explanation
Indices: 73098574--73098609 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73098564 TTCACCTTAC
73098574 AAAGCACTC-TCTTTTTCA
1 AAAGCACTCATCTTTTTCA
*
73098592 AAAGCATTCATCTTTTTC
1 AAAGCACTCATCTTTTTC
73098610 CCTTGCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (19 bp):
AAAGCACTCATCTTTTTCA
Found at i:73100139 original size:45 final size:48
Alignment explanation
Indices: 73100088--73100212 Score: 184
Period size: 48 Copynumber: 2.6 Consensus size: 48
73100078 TGATATGTGT
* *
73100088 GCTAGTGTAAGACATGTCTGGGACAT-CATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
* *
73100133 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
73100181 GCTAGTGTAAGACATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
73100213 AGCTTGTTGT
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
45 26 0.36
46 13 0.18
47 1 0.01
48 27 0.38
49 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
Found at i:73100299 original size:49 final size:49
Alignment explanation
Indices: 73100136--73100399 Score: 192
Period size: 49 Copynumber: 5.5 Consensus size: 49
73100126 GACGAGAGCT
* * * * * *
73100136 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGATAT-ACAAGCT
1 AGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGA-AAGCC
* * * * * *
73100184 AGTGTAAGACATGTCTGGGACATGGCATC-AGCTTG-TTG-TG--TGTC
1 AGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* *
73100228 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
73100277 AGTGTAAGACTTGCCTAGGACATGGCATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACTTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
* * **
73100326 AGTGTAAGACCTT-TCTGGGACATGGCATCGACTTTGAT-G-TGTTAGCC
1 AGTGTAAGA-CTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
*
73100373 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGA-CTTGTCTGGGACATGGC
73100400 GTCGGCATCT
Statistics
Matches: 174, Mismatches: 29, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
44 29 0.17
45 2 0.01
46 4 0.02
47 19 0.11
48 42 0.24
49 74 0.43
50 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:73116340 original size:40 final size:40
Alignment explanation
Indices: 73116255--73116405 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73116245 AATTGAATGA
* * *
73116255 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73116295 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73116336 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73116375 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73116406 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73116419 original size:40 final size:40
Alignment explanation
Indices: 73116292--73116421 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
73116282 ATGCTGGAAA
* * * *
73116292 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
73116332 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
73116372 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
73116412 TTATATCCGG
1 TTATATCCGG
73116422 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:73124826 original size:69 final size:70
Alignment explanation
Indices: 73124694--73124826 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
73124684 TAGTTTATTA
* * * *
73124694 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
73124759 CTTAG
66 CTTAG
73124764 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
73124827 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:73126259 original size:47 final size:47
Alignment explanation
Indices: 73126144--73126530 Score: 625
Period size: 47 Copynumber: 8.3 Consensus size: 47
73126134 ACAAGATATG
73126144 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--ATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126189 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126236 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126283 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126330 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
73126377 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126424 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
73126471 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
73126518 TAAATGTGATAAG
1 TATATGTGATAAG
73126531 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 41 0.13
47 278 0.87
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:73132031 original size:29 final size:28
Alignment explanation
Indices: 73131999--73132101 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
73131989 GTGACGAGAT
* *
73131999 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
73132028 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
73132057 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
73132086 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73132102 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:73135301 original size:38 final size:39
Alignment explanation
Indices: 73135251--73135331 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
73135241 TGATTGTGGT
73135251 TCTT-ATCTTCTTTA-TTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
73135288 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
73135327 TCTTA
1 TCTTA
73135332 CAAAGATAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 4 0.10
38 10 0.24
39 28 0.67
ACGTcount: A:0.15, C:0.11, G:0.10, T:0.64
Consensus pattern (39 bp):
TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
Found at i:73135357 original size:10 final size:10
Alignment explanation
Indices: 73135342--73135371 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
73135332 CAAAGATAAA
73135342 AAAAAAAAAG
1 AAAAAAAAAG
73135352 AAAAAAAAAG
1 AAAAAAAAAG
*
73135362 AAAAGAAAAG
1 AAAAAAAAAG
73135372 TTCGTTCGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:73135357 original size:15 final size:15
Alignment explanation
Indices: 73135333--73135370 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
73135323 GTTATCTTAC
*
73135333 AAAGATAAAAAAAAA
1 AAAGAAAAAAAAAAA
*
73135348 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAAA
73135363 AAAGAAAA
1 AAAGAAAA
73135371 GTTCGTTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.03
Consensus pattern (15 bp):
AAAGAAAAAAAAAAA
Found at i:73136031 original size:6 final size:6
Alignment explanation
Indices: 73136009--73136053 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
73135999 ATTACCACTA
* *
73136009 TTATTT TTCTAT TTATTT TTATTT TTATTT TTATTTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TTT TTATTT TT
73136054 TTAACTTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 28 0.82
7 6 0.18
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:73142677 original size:39 final size:39
Alignment explanation
Indices: 73142625--73142791 Score: 255
Period size: 39 Copynumber: 4.3 Consensus size: 39
73142615 TATGAGATTG
*
73142625 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
73142664 AAAATATCCGGACATGAGATCCGCAGGCT-TCATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTAT-ATGCTGGA
*
73142703 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * **
73142742 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
73142781 AAAATATCCGG
1 AAAATATCCGG
73142792 GTTAAAGACC
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 115 0.98
40 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:73142805 original size:78 final size:78
Alignment explanation
Indices: 73142625--73142817 Score: 237
Period size: 78 Copynumber: 2.5 Consensus size: 78
73142615 TATGAGATTG
* ** *
73142625 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
*
73142690 GCTTCATGCTGGA
66 GCTACATGCTGGA
* * * * *
73142703 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
*
73142768 GCTACGTGCTGGA
66 GCTACATGCTGGA
** *
73142781 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
73142818 TAATGTATTC
Statistics
Matches: 102, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
77 8 0.08
78 94 0.92
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
GCTACATGCTGGA
Found at i:73144312 original size:40 final size:40
Alignment explanation
Indices: 73144267--73144396 Score: 183
Period size: 40 Copynumber: 3.2 Consensus size: 40
73144257 CGGAATACAA
73144267 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73144307 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* *
73144347 CCGGATATAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
73144387 CCGGATATAA
1 CCGGATATAA
73144397 TTTCCAGCAT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73152279 original size:24 final size:24
Alignment explanation
Indices: 73152247--73152302 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
73152237 TTTGTAACTT
*
73152247 CTACTTTTGGAGACTGTTTTTGAG
1 CTACTTTTGGAGACTATTTTTGAG
73152271 CTACTTTTGGAGACTATTTTTGAG
1 CTACTTTTGGAGACTATTTTTGAG
*
73152295 CTATTTTT
1 CTACTTTT
73152303 TTCTACTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.12, G:0.20, T:0.50
Consensus pattern (24 bp):
CTACTTTTGGAGACTATTTTTGAG
Found at i:73152303 original size:12 final size:11
Alignment explanation
Indices: 73152263--73152302 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
73152253 TTGGAGACTG
73152263 TTTTTGAGCTA
1 TTTTTGAGCTA
*
73152274 CTTTTGGAGACTA
1 -TTTTTGAG-CTA
73152287 TTTTTGAGCTA
1 TTTTTGAGCTA
73152298 TTTTT
1 TTTTT
73152303 TTCTACTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 8 0.32
12 14 0.56
13 3 0.12
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.55
Consensus pattern (11 bp):
TTTTTGAGCTA
Found at i:73154203 original size:42 final size:42
Alignment explanation
Indices: 73154145--73154251 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
73154135 GATGTAGGAG
* * *
73154145 ACACACGACCAAGACACACGCCCATGTGCTAGGCCATGTGTC
1 ACACACGGCTAAGACACACACCCATGTGCTAGGCCATGTGTC
* * * *
73154187 ACACATGGCTGAGACACACACCTATGTGCTAGGCCGTGTGTC
1 ACACACGGCTAAGACACACACCCATGTGCTAGGCCATGTGTC
73154229 ACACACGGCTAAGACACACACCC
1 ACACACGGCTAAGACACACACCC
73154252 GTGTCTCTGC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (42 bp):
ACACACGGCTAAGACACACACCCATGTGCTAGGCCATGTGTC
Found at i:73154266 original size:42 final size:42
Alignment explanation
Indices: 73154145--73154268 Score: 133
Period size: 42 Copynumber: 3.0 Consensus size: 42
73154135 GATGTAGGAG
* * * * *
73154145 ACACACGACCAAGACACACGCCCATGTGCTAGGCCATGTGTC
1 ACACACGGCTAAGACACACACCCATGTGCTAGCCCGTGTGTC
* * * *
73154187 ACACATGGCTGAGACACACACCTATGTGCTAGGCCGTGTGTC
1 ACACACGGCTAAGACACACACCCATGTGCTAGCCCGTGTGTC
* *
73154229 ACACACGGCTAAGACACACACCCGTGT-CTCTGCCCGTGTG
1 ACACACGGCTAAGACACACACCCATGTGCT-AGCCCGTGTG
73154269 GATGAAAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 2 0.03
42 66 0.97
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.18
Consensus pattern (42 bp):
ACACACGGCTAAGACACACACCCATGTGCTAGCCCGTGTGTC
Found at i:73155397 original size:26 final size:25
Alignment explanation
Indices: 73155359--73155431 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
73155349 GAAGCTCCAG
*
73155359 AGAGCCATTAATCAGGACACTCACGA
1 AGAGCC-TTAATCGGGACACTCACGA
*
73155385 ATAGCCTTTAATCGGGA-AGCTCACGA
1 AGAGCC-TTAATCGGGACA-CTCACGA
73155411 AGAGCCTTATATCGGGACACT
1 AGAGCCTTA-ATCGGGACACT
73155432 AATAAGAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 4 0.10
26 35 0.88
27 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.21
Consensus pattern (25 bp):
AGAGCCTTAATCGGGACACTCACGA
Found at i:73158805 original size:97 final size:91
Alignment explanation
Indices: 73158614--73158806 Score: 235
Period size: 91 Copynumber: 2.1 Consensus size: 91
73158604 ATCAAATACA
* * *
73158614 ATACAAGTTCAACCATTCAATCATTCATTTCATTCAAAATAATCCAGGAACACATATTGAGGGAC
1 ATACAAATTCAACCATTCAATCATTCATTTCATTCAAAAAAATCCAGGAACACATATTGACGGAC
*
73158679 CACTAATAATGCTGCTTCAGATCATT
66 CACCAATAATGCTGCTTCAGATCATT
** *
73158705 ATACAAATTCAACCATTCAATCATTCATTTCATTCAAAACAAATTTAGAGATATCTCATTTCATT
1 ATACAAATTCAACCATTCAATCATTCATTTCATTCAAAA-AAATCCAG-GA-A-CACA--T-ATT
* *
73158770 -CCGGACCACCAATAATGTTGCTTCAGATCATT
59 GACGGACCACCAATAATGCTGCTTCAGATCATT
73158802 ATACA
1 ATACA
73158807 TTTTCATACT
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
91 38 0.44
92 5 0.06
93 2 0.02
94 1 0.01
95 3 0.03
97 34 0.40
98 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (91 bp):
ATACAAATTCAACCATTCAATCATTCATTTCATTCAAAAAAATCCAGGAACACATATTGACGGAC
CACCAATAATGCTGCTTCAGATCATT
Found at i:73164437 original size:12 final size:11
Alignment explanation
Indices: 73164411--73164436 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73164401 GAAAATGATG
73164411 AAAACAAAGAA
1 AAAACAAAGAA
73164422 AAAACAAAGAA
1 AAAACAAAGAA
73164433 AAAA
1 AAAA
73164437 ATAAGTGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAACAAAGAA
Found at i:73165921 original size:40 final size:39
Alignment explanation
Indices: 73165817--73166032 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 39
73165807 TGGATGATAA
* *
73165817 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
73165857 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
73165896 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
73165936 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
73165976 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
73166015 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73166033 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 16 0.10
39 48 0.30
40 96 0.60
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:73173574 original size:40 final size:40
Alignment explanation
Indices: 73173519--73173735 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
73173509 TGGATGATAA
** * *
73173519 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
73173559 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
73173599 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73173639 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73173679 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73173718 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73173736 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 15 0.09
39 16 0.10
40 131 0.81
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73178226 original size:21 final size:20
Alignment explanation
Indices: 73178200--73178239 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
73178190 TGCATGGCTC
*
73178200 ACACGCTCGTATGGTCTAGGG
1 ACACGCCCGTATGGT-TAGGG
*
73178221 ACACGCCCGTGTGGTTAGG
1 ACACGCCCGTATGGTTAGG
73178240 CCGTGTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTATGGTTAGGG
Found at i:73182729 original size:39 final size:40
Alignment explanation
Indices: 73182556--73182746 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
73182546 GGATATAGCT
* * *
73182556 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
73182596 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
73182636 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
73182676 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
73182715 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73182747 TTATCATCCA
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 33 0.24
40 103 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:73190738 original size:40 final size:40
Alignment explanation
Indices: 73190644--73190872 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
73190634 GGATATAGCT
* * *
73190644 ACTCGCTCAAATGCCTTCGGGACATAGCCC-G-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
73190683 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
73190723 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
73190763 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
73190803 ACTCGCACAAATGCCTTCGGGACTT-GCCC-GAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
73190841 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73190873 TTATCATCCA
Statistics
Matches: 173, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 28 0.16
39 35 0.20
40 108 0.62
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:73197981 original size:12 final size:13
Alignment explanation
Indices: 73197945--73197982 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
73197935 AAATATTTGG
73197945 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
73197958 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
73197972 CTTG-TCTTAAT
1 CTTGTTCTTAAT
73197983 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:73200289 original size:26 final size:26
Alignment explanation
Indices: 73200199--73200290 Score: 84
Period size: 26 Copynumber: 3.6 Consensus size: 26
73200189 CAAGCGAGCC
*
73200199 ATATCGAGAAGCTC-CGAAAAGCCATT
1 ATATCGAGAAGCTCACGAAGAGCC-TT
*
73200225 A-ATC-AGGAAGCTCACAAAGAGCCTT
1 ATATCGA-GAAGCTCACGAAGAGCCTT
* *
73200250 -TAATTGGGAAGCTCACGAAGAGCCTT
1 AT-ATCGAGAAGCTCACGAAGAGCCTT
*
73200276 ATATCGAGATGCTCA
1 ATATCGAGAAGCTCA
73200291 TAAAAGCTGC
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
24 1 0.02
25 12 0.23
26 38 0.73
27 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (26 bp):
ATATCGAGAAGCTCACGAAGAGCCTT
Found at i:73200608 original size:2 final size:2
Alignment explanation
Indices: 73200549--73200589 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
73200539 TTCACAATTC
73200549 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73200590 ACAGTCAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73204309 original size:36 final size:36
Alignment explanation
Indices: 73204267--73204338 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
73204257 TAAAAATGTT
73204267 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
1 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
73204303 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
1 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
73204339 TTTTTCATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (36 bp):
AATAAGACAATTATGAACTTAAAATAAATAAAAATA
Found at i:73205224 original size:7 final size:7
Alignment explanation
Indices: 73205212--73205236 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73205202 ACTTCCCCCT
73205212 TTCTTCC
1 TTCTTCC
73205219 TTCTTCC
1 TTCTTCC
73205226 TTCTTCC
1 TTCTTCC
73205233 TTCT
1 TTCT
73205237 CCCCCCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (7 bp):
TTCTTCC
Found at i:73208763 original size:12 final size:12
Alignment explanation
Indices: 73208746--73208771 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73208736 CCCTCCGCTT
73208746 CAAAATCGATTC
1 CAAAATCGATTC
73208758 CAAAATCGATTC
1 CAAAATCGATTC
73208770 CA
1 CA
73208772 TTCGTAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.23
Consensus pattern (12 bp):
CAAAATCGATTC
Found at i:73212940 original size:20 final size:20
Alignment explanation
Indices: 73212897--73212947 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
73212887 GTGATGAAAA
* *
73212897 AAAATTCAAAATAATATCAT
1 AAAATTCAAAAAAAAATCAT
73212917 -AAATTCAAAAAAAAATCAT
1 AAAATTCAAAAAAAAATCAT
*
73212936 AAAATCCAAAAA
1 AAAATTCAAAAA
73212948 GACAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.22
Consensus pattern (20 bp):
AAAATTCAAAAAAAAATCAT
Found at i:73220516 original size:2 final size:2
Alignment explanation
Indices: 73220511--73220545 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
73220501 GTGTATATTT
* *
73220511 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73220546 GTTTTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73220661 original size:30 final size:30
Alignment explanation
Indices: 73220606--73220680 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
73220596 TTTATCCCTA
*
73220606 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
73220635 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
73220666 ATATATTATGTATAT
1 ATATATTATGTATAT
73220681 GTGTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:73225613 original size:19 final size:19
Alignment explanation
Indices: 73225579--73225615 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73225569 CTATTTTATA
*
73225579 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
*
73225598 TATATTTCTAGCATCATT
1 TATATTTCTAACATCATT
73225616 ATTATTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:73225706 original size:9 final size:9
Alignment explanation
Indices: 73225688--73225724 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
73225678 TCATTTCTAA
73225688 TATATATAT
1 TATATATAT
*
73225697 TATATGTAT
1 TATATATAT
*
73225706 TTTATATAT
1 TATATATAT
73225715 TATATATAT
1 TATATATAT
73225724 T
1 T
73225725 TTTTAATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TATATATAT
Found at i:73225713 original size:18 final size:18
Alignment explanation
Indices: 73225690--73225726 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
73225680 ATTTCTAATA
*
73225690 TATATATTATATGTATTT
1 TATATATTATATATATTT
73225708 TATATATTATATATATTT
1 TATATATTATATATATTT
73225726 T
1 T
73225727 TTAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:73225833 original size:22 final size:23
Alignment explanation
Indices: 73225788--73225833 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
73225778 TTATATCATC
*
73225788 TTATGTACATATATAAATATTATG
1 TTATGTACATATAT-AATAATATG
*
73225812 TTATGTACATATAT-GTAATATG
1 TTATGTACATATATAATAATATG
73225834 CTTTTTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
24 14 0.70
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (23 bp):
TTATGTACATATATAATAATATG
Found at i:73225932 original size:22 final size:20
Alignment explanation
Indices: 73225906--73225952 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
73225896 TTGTTAATAC
73225906 TAGTACATATACTTTATTATA
1 TAGTACATATACTTTA-TATA
*
73225927 TGAGTATATATACTTTATATA
1 T-AGTACATATACTTTATATA
73225948 TAGTA
1 TAGTA
73225953 TTATTTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 6 0.25
22 14 0.58
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (20 bp):
TAGTACATATACTTTATATA
Found at i:73226005 original size:21 final size:20
Alignment explanation
Indices: 73225974--73226027 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
73225964 CATTATCATA
*
73225974 TTTATTATTATACCTATTAT
1 TTTAATATTATACCTATTAT
* *
73225994 TTTCACTATTATCACTTATTAT
1 TTT-AATATTAT-ACCTATTAT
73226016 TTTAATATTATA
1 TTTAATATTATA
73226028 TATATATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 4 0.14
21 14 0.48
22 11 0.38
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTAATATTATACCTATTAT
Found at i:73237193 original size:6 final size:7
Alignment explanation
Indices: 73237176--73237209 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
73237166 ATTATGCCTA
73237176 AAAAAAG
1 AAAAAAG
73237183 AAAAAAG
1 AAAAAAG
73237190 AAAAAAG
1 AAAAAAG
73237197 -AAAAAG
1 AAAAAAG
73237203 AAAAAAG
1 AAAAAAG
73237210 GGGATCAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:73237200 original size:13 final size:14
Alignment explanation
Indices: 73237176--73237209 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
73237166 ATTATGCCTA
73237176 AAAAAAGAAAAAAG
1 AAAAAAGAAAAAAG
73237190 AAAAAAG-AAAAAG
1 AAAAAAGAAAAAAG
73237203 AAAAAAG
1 AAAAAAG
73237210 GGGATCAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAAG
Done.