Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 247 of 378
Found at i:73526588 original size:26 final size:22
Alignment explanation
Indices: 73526559--73526606 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 22
73526549 AGTTGTAAAG
73526559 AGAAAATTCTCTGAAAAGATTATTTT
1 AGAAAATT-TCT--AAAGA-TATTTT
73526585 AGAAAATTTCTAAAGATATTTT
1 AGAAAATTTCTAAAGATATTTT
73526607 TTATTTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
25 3 0.14
26 8 0.36
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (22 bp):
AGAAAATTTCTAAAGATATTTT
Found at i:73537265 original size:16 final size:16
Alignment explanation
Indices: 73537246--73537277 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73537236 AATTGTTTTA
73537246 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
73537262 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
73537278 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:73537567 original size:50 final size:50
Alignment explanation
Indices: 73537492--73537865 Score: 383
Period size: 50 Copynumber: 7.4 Consensus size: 50
73537482 TACGCATAGA
73537492 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * * * * *
73537542 AGCCTGCACTTTGTACTACACATGTGACTTAACCATCTGATACACTTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
** * ** * * * *
73537592 AGCCTGCACTTAGTACTACACACATTATCGAAGTTAA-CGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGT
* *
73537643 AGCCTGCACTTAGTACGACACATGTGACCTATCAATCTAGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * * * * * *
73537693 AGCCTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* * * ** * * * *
73537743 AGTCTACACTTAGTACTACATATGTGATCGAAGTTAA-CGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTAGT
*
73537794 AGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
*
73537844 AGCCTGCATTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
73537866 CATGACTCAC
Statistics
Matches: 257, Mismatches: 61, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
49 6 0.02
50 179 0.70
51 70 0.27
52 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
AGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
Found at i:73537743 original size:151 final size:151
Alignment explanation
Indices: 73537481--73537872 Score: 631
Period size: 151 Copynumber: 2.6 Consensus size: 151
73537471 AAGCTCTCTA
*
73537481 GTACGCATAGAAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCC
* * * *
73537546 TGCACTTTGTACTACACATGTGACTTAACCATCTGATACACTTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
*
73537611 ACACATTATCGAAGTTAACGG
131 ACACATGATCGAAGTTAACGG
* *
73537632 GTACGCATAGTAGCCTGCACTTAGTACGACACATGTGACCTATCAATCTAGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCC
* * *
73537697 TACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAGTCTACACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
* **
73537762 ATATGTGATCGAAGTTAACGG
131 ACACATGATCGAAGTTAACGG
*
73537783 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCC
* *
73537848 TGCATTTAGTACTACACACATGACT
66 TGCACTTAGTACTACACACGTGACT
73537873 CACAATGAAT
Statistics
Matches: 220, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 220 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (151 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
ACACATGATCGAAGTTAACGG
Found at i:73538248 original size:19 final size:20
Alignment explanation
Indices: 73538220--73538266 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
73538210 AAGAACATGT
73538220 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
73538241 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
73538260 TATATAT
1 TATATAT
73538267 ACTTATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:73541065 original size:12 final size:12
Alignment explanation
Indices: 73541048--73541087 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
73541038 GTGTGAAAAT
73541048 TGAAATTTTATG
1 TGAAATTTTATG
73541060 TGAAATTTTATG
1 TGAAATTTTATG
* *
73541072 TGTAATATTAATG
1 TGAAAT-TTTATG
73541085 TGA
1 TGA
73541088 TTTAATTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 17 0.71
13 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.47
Consensus pattern (12 bp):
TGAAATTTTATG
Found at i:73548273 original size:49 final size:50
Alignment explanation
Indices: 73548210--73548327 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 50
73548200 TCAAGTCGAT
*
73548210 GCCATGTCCTAGACATGGTATTACACTAACTATCA-AAGT-CGAGGCTGAC
1 GCCATGTCCCAGACATGGTATTACACTAACTATCACAAGTCCG-GGCTGAC
* * * ** * *
73548259 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATTTCCGTGCTGAT
1 GCCATGTCCCAGACATGGTATTACACTAACTATCACAAGTCCGGGCTGAC
73548309 GCCATGTCCCAGACATGGT
1 GCCATGTCCCAGACATGGT
73548328 CTCACACTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
49 31 0.53
50 26 0.44
51 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTATTACACTAACTATCACAAGTCCGGGCTGAC
Found at i:73548512 original size:47 final size:48
Alignment explanation
Indices: 73548157--73548525 Score: 273
Period size: 47 Copynumber: 7.7 Consensus size: 48
73548147 AGGGTATAAT
* * *
73548157 GCCGATGCCATGTCCCAAACATGATCTTACACTGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CAT-AATGTG
* * * * *
73548206 --CGATGCCATGTCCTAGACATGGTATTACACTAACTATCA-AAGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA-T-GTG
* * * *
73548253 GCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATTTCCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT--G
* * *
73548302 TGCTGATGCCATGTCCCAGACATGGTCTCACACT-GACACCTC-TATATGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-C-TCTCATA-ATGTG
* *
73548351 GCCGGTGCCATGTCCCAGACATGGTCTTACAC-AGGCTCTCATAATGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-GCTCTCATAATGTG
* * ** * **
73548399 GCCAATG-CATGTCCCAGACAT-GTCTTGCACTAGCTCTTGT-CTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTG
* * *
73548445 GCCAATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTG
73548493 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG
73548526 AACACAAATA
Statistics
Matches: 252, Mismatches: 46, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
45 3 0.01
46 35 0.14
47 75 0.30
48 61 0.24
49 38 0.15
50 32 0.13
51 3 0.01
52 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTG
Found at i:73554438 original size:2 final size:2
Alignment explanation
Indices: 73554431--73554460 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
73554421 ACTTATGTAG
73554431 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73554461 GGCACTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73555082 original size:40 final size:40
Alignment explanation
Indices: 73555001--73555177 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
73554991 CAGATGGTAA
* * *
73555001 CCGGACTAAGATCCGAAGGCATTCATGCGAGTTGCTT-TAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* * * * *
73555041 CCAGGCTATGTCTCGAAGGCATTTATGCCAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* *
73555081 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
73555121 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
73555161 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
73555178 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 17 0.15
40 96 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:73557998 original size:20 final size:21
Alignment explanation
Indices: 73557973--73558012 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73557963 CCCTTGAAAT
73557973 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
* *
73557993 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
73558013 TTTACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:73559145 original size:47 final size:48
Alignment explanation
Indices: 73559076--73559250 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 48
73559066 GTATAATGCT
* * *
73559076 GATGCCATGTCCCAGACATGGTCTTACACAGGCTCATC-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAGACT-ATCAAATCGAAGCC
* * *
73559123 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCTAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAGACTATC-AAATCGAAGCC
* * * * *
73559172 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCTAACATATTCGTA-CC
1 GATGCCATGTCCCAGACATGGTCTTACAC-AG-ACTATCA-AATCGAAGCC
* *
73559222 GATGTCATGTCCCAGACATGGCCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
73559251 TGATACCTTT
Statistics
Matches: 105, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
46 3 0.03
47 31 0.30
48 3 0.03
49 30 0.29
50 30 0.29
51 8 0.08
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACAGACTATCAAATCGAAGCC
Found at i:73559191 original size:49 final size:47
Alignment explanation
Indices: 73559079--73559253 Score: 149
Period size: 49 Copynumber: 3.6 Consensus size: 47
73559069 TAATGCTGAT
* * * * *
73559079 GCCATGTCCCAGACATGGTCTTACACAGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
* *
73559126 GCCATGTCCTAGACATGGTCTTACACTGACT-ATCTAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGCCGAC
* * *
73559175 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTAACATATTCGTA-CCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTC-ATCA-A-TC-AAGCCGAC
* *
73559225 GTCATGTCCCAGACATGGCCTTACACTGA
1 GCCATGTCCCAGACATGGTCTTACACTGA
73559254 TACCTTTATA
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
46 3 0.03
47 28 0.27
48 4 0.04
49 34 0.32
50 30 0.29
51 6 0.06
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
Found at i:73559351 original size:46 final size:44
Alignment explanation
Indices: 73559177--73559442 Score: 169
Period size: 48 Copynumber: 5.6 Consensus size: 44
73559167 AGGCCGACGC
* *
73559177 CATGTCCCAGACATGGTCTTACACTAGCTCTAACATATTCGTACCGATG
1 CATGT-CCAGACAT-GTCTTACACTAGCTCT--CATAAT-GTGCCGATG
* * * * *
73559226 TCATGTCCCAGACATGGCCTTACACT-GATAC-CTTTATACGTGTCGATG
1 -CATGT-CCAGACAT-GTCTTACACTAGCT-CTC-ATA-ATGTGCCGATG
* * *
73559274 CCACGTCCTAGACACAGTCTTACACTGGCTCTCATAATGTGACCGATG
1 -CATGTCC-AGACA-TGTCTTACACTAGCTCTCATAATGTG-CCGATG
* *
73559322 CATGTCACAGACATGTCTTACACTAGCTCTCGT-CTCGATGCCGATG
1 CATGTC-CAGACATGTCTTACACTAGCTCTCATAAT-G-TGCCGATG
* * *
73559368 CCATGTCCTAAACATGTTCTTACACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCC-AGACATG-TCTTACACTAGCTCTCATAATGT-GCCGATG
73559416 CATGTCCCAGACATGTCTTACACTAGC
1 CATGT-CCAGACATGTCTTACACTAGC
73559443 ACACAAATAA
Statistics
Matches: 172, Mismatches: 27, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
45 1 0.01
46 36 0.21
47 43 0.25
48 61 0.35
49 6 0.03
50 25 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
CATGTCCAGACATGTCTTACACTAGCTCTCATAATGTGCCGATG
Found at i:73559376 original size:94 final size:94
Alignment explanation
Indices: 73559269--73559442 Score: 280
Period size: 94 Copynumber: 1.9 Consensus size: 94
73559259 TTATACGTGT
73559269 CGATGCCACGTCCTAGACACA-G-TCTTACACTGGCTCTCATAATGTGACCGATGCATGTCACAG
1 CGATGCCACGTCCTA-A-ACATGTTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCACAG
73559332 ACATGTCTTACACTAGCTCTCGTCTCGATGC
64 ACATGTCTTACACTAGCTCTCGTCTCGATGC
* * * *
73559363 CGATGCCATGTCCTAAACATGTTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGAC
1 CGATGCCACGTCCTAAACATGTTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCACAGAC
73559428 ATGTCTTACACTAGC
66 ATGTCTTACACTAGC
73559443 ACACAAATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 3 0.04
93 2 0.03
94 69 0.93
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CGATGCCACGTCCTAAACATGTTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCACAGAC
ATGTCTTACACTAGCTCTCGTCTCGATGC
Found at i:73566836 original size:40 final size:40
Alignment explanation
Indices: 73566791--73566920 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73566781 CGGAATACAA
73566791 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73566831 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73566871 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
73566911 CCGGATATAA
1 CCGGATATAA
73566921 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73574940 original size:40 final size:40
Alignment explanation
Indices: 73574895--73575062 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
73574885 CGGAATACAA
73574895 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73574935 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73574975 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73575015 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73575055 CCGGATAT
1 CCGGATAT
73575063 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73577242 original size:27 final size:27
Alignment explanation
Indices: 73577212--73577526 Score: 280
Period size: 27 Copynumber: 11.7 Consensus size: 27
73577202 CTCGATTAGC
73577212 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
73577239 AAAATTACCAAAATACCCCT-GTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
73577265 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
73577292 GAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* ** **
73577319 GAAATTACTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* **
73577346 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
73577373 AAAATTACCAAAATACCCCCGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * ** **
73577400 GAAATTACCGAAATA-CCCTTATAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* * * * *
73577427 AGAATTACCGAAATA-CCTTTGTAGTGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* * **
73577454 GAAATTACTAAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* **
73577481 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
73577508 AAAATTACCAAAATACCCC
1 AAAATTACCAAAATACCCC
73577527 CAATTAGTGA
Statistics
Matches: 235, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 35 0.15
27 194 0.83
28 6 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:73577568 original size:27 final size:27
Alignment explanation
Indices: 73577538--73577731 Score: 282
Period size: 27 Copynumber: 7.2 Consensus size: 27
73577528 AATTAGTGAG
* *
73577538 ATTACTGAAATGCCCCTGTAAGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
* *
73577565 ATTACCGAAATACCCCTATAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
73577592 ATTA-TCGAAATACCCCTGTAGGGTAGA
1 ATTACT-GAAATACCCCTGTAGGGTAGA
73577619 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
*
73577646 ATTACCGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
* **
73577673 ATTATTGAAATACCCCTGTAATGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
* *
73577700 ATTACTGAGATACCCTTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
73577727 ATTAC
1 ATTAC
73577732 CATTTTGCCC
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
27 148 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAGGGTAGA
Found at i:73577568 original size:54 final size:54
Alignment explanation
Indices: 73577510--73577732 Score: 242
Period size: 54 Copynumber: 4.1 Consensus size: 54
73577500 TGGTTTACAA
* * * *
73577510 AATTACCAAAATACCCCCAATTAGTG-AG-ATTACTGAAATGCCCCTGTAAGGTAG
1 AATTACCGAAATA-CCCC-ATTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
73577564 AATTACCGAAATACCCC-TATAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCAT-TAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* *
73577618 AATTACTGAAATACCCC-TGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCAT-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** ** * *
73577672 AATTATTGAAATACCCC-TGTAATGTAGAATTACTGAGATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCAT-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
73577726 AATTACC
1 AATTACC
73577733 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
51 1 0.01
52 4 0.03
53 7 0.05
54 137 0.92
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCCATTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:73577595 original size:81 final size:81
Alignment explanation
Indices: 73577402--73577732 Score: 284
Period size: 81 Copynumber: 4.1 Consensus size: 81
73577392 CGATTTGTGA
* * ** * *
73577402 AATTACCGAAATACCCTTATAGGGTAGAATTACCGAAATACCTTTGTAGTGT-GAAATTACTAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG-AATTACTGAA
** *
73577466 ATA-CCCTCG-ACTTGTAA
65 ATACCCCT-GTA-AGGTAG
* * * *
73577483 AATTACCAAAATA-CCCT-T-GGTTTACAAAATTACCAAAATACCCCCAAT-TAGTG-AG-ATTA
1 AATTACCGAAATACCCCTATAGG-GT--AGAATTACCAAAATA-CCCC--TGTAGGGTAGAATTA
*
73577542 CTGAAATGCCCCTGTAAGGTAG
60 CTGAAATACCCCTGTAAGGTAG
* *
73577564 AATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAA
*
73577629 TACCCCTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* *** ** *
73577645 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAATGTAGAATTACTGAGA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAA
* *
73577710 TACCCTTGTAGGGTAG
66 TACCCCTGTAAGGTAG
73577726 AATTACC
1 AATTACC
73577733 ATTTTGCCCC
Statistics
Matches: 209, Mismatches: 26, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.01
79 6 0.03
80 9 0.04
81 169 0.81
82 11 0.05
83 8 0.04
84 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (81 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAA
TACCCCTGTAAGGTAG
Found at i:73577743 original size:81 final size:81
Alignment explanation
Indices: 73577538--73577732 Score: 318
Period size: 81 Copynumber: 2.4 Consensus size: 81
73577528 AATTAGTGAG
* *
73577538 ATTACTGAAATGCCCCTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAAT
1 ATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAAT
*
73577603 ACCCCTGTAGGGTAGA
66 ACCCCTGTAAGGTAGA
* *
73577619 ATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAAT
1 ATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAAT
*
73577684 ACCCCTGTAATGTAGA
66 ACCCCTGTAAGGTAGA
* *
73577700 ATTACTGAGATACCCTTGTAGGGTAGAATTACC
1 ATTACTGAAATACCCCTGTAGGGTAGAATTACC
73577733 ATTTTGCCCC
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (81 bp):
ATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAAT
ACCCCTGTAAGGTAGA
Found at i:73577973 original size:25 final size:25
Alignment explanation
Indices: 73577935--73578004 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
73577925 AGGAAGTGCT
* *
73577935 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
73577960 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
73577985 AAAAGGGCTTCGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73578005 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:73578017 original size:24 final size:23
Alignment explanation
Indices: 73577934--73578017 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 23
73577924 AAGGAAGTGC
73577934 TAAAAGGGCTATGCCCCAGTTTAT
1 TAAAAGGGCT-TGCCCCAGTTTAT
*
73577958 CGAAAAGGGCTTTGCCCCAGTTTAT
1 -TAAAAGGGC-TTGCCCCAGTTTAT
*
73577983 CAAAAAGGGCTTCGCCCCAG-TTAT
1 -TAAAAGGGCTT-GCCCCAGTTTAT
73578007 TAAAAGAGGCT
1 TAAAAG-GGCT
73578018 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.09
24 10 0.19
25 37 0.70
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (23 bp):
TAAAAGGGCTTGCCCCAGTTTAT
Found at i:73578028 original size:50 final size:50
Alignment explanation
Indices: 73577935--73578029 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
73577925 AGGAAGTGCT
**
73577935 AAAAGGGCTATGCCCCAGTTTATCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
*
73577985 AAAAGGGCT-TCGCCCCAG-TTAT-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTAT-GCCCCAGTTTATCGAAAAG-GGCTAGGCC-CCAGTT
73578030 ATATGATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
48 5 0.13
49 12 0.31
50 22 0.56
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:73580284 original size:27 final size:27
Alignment explanation
Indices: 73580254--73580571 Score: 163
Period size: 27 Copynumber: 11.8 Consensus size: 27
73580244 ATTATCGTTT
*
73580254 TACCCTCGATTAGCAAAATTACCAAAA
1 TACCCTCGATTAGTAAAATTACCAAAA
* *
73580281 TACCC-CTATTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAA
* * * *
73580308 CACCC-CTAGTTTGTGAAATTACCAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAA
* * **
73580335 TACCC-CTGATTTGTGAAATTACTGAAA
1 TACCCTC-GATTAGTAAAATTACCAAAA
*
73580362 TACCATCGACTT-GTAAAATTACCAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAA
* * *
73580389 TACCCTTGGTTTA-CAAAATTACCAAAA
1 TACCC-TCGATTAGTAAAATTACCAAAA
* * * **
73580416 TACCCCCGATTTGTGAAATTACTGAAA
1 TACCCTCGATTAGTAAAATTACCAAAA
** * *
73580443 TACCCTTAC-A-GGGTAGAATTACTAAAA
1 TACCC-T-CGATTAGTAAAATTACCAAAA
* * * * **
73580470 TAACCTTGTAGT-GTGAAATTACTGAAA
1 TACCCTCG-ATTAGTAAAATTACCAAAA
73580497 TACCCTCGACTT-GTAAAATTACCAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAA
* * *
73580524 TACCCTTGGTTTA-CAAAATTACCAAAA
1 TACCC-TCGATTAGTAAAATTACCAAAA
*
73580551 TACCC-CGATTAGTGAAATTAC
1 TACCCTCGATTAGTAAAATTAC
73580572 TGAAATAACC
Statistics
Matches: 224, Mismatches: 51, Indels: 33
0.73 0.17 0.11
Matches are distributed among these distances:
25 4 0.02
26 14 0.06
27 196 0.88
28 9 0.04
29 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTAGTAAAATTACCAAAA
Found at i:73580332 original size:54 final size:54
Alignment explanation
Indices: 73580269--73580571 Score: 195
Period size: 54 Copynumber: 5.6 Consensus size: 54
73580259 TCGATTAGCA
* *
73580269 AAATTACCAAAATACCCCTATTTTGTAAAATTACCAAAACACCCCTAG-TTTGTG
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTCGATTTGTG
* ** * * *
73580323 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCATCGACTTGTA
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTACCAAAATACCCCTCGATTTGTG
* * **
73580377 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC-CGATTTGTG
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTACCAAAATACCCCTCGATTTGTG
** * *** * * * * *
73580431 AAATTACTGAAATACCCTTACAGGGTAGAATTACTAAAATA-ACCTTG-TAGTGTG
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTCGAT-TTGTG
** * * * * ***
73580485 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATA-CCCTTGGTTTACA
1 AAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCCCTCGATTTGTG
* * *
73580539 AAATTACCAAAATACCCCGATTAGTGAAATTAC
1 AAATTACCAAAATACCCCTATTTGTAAAATTAC
73580572 TGAAATAACC
Statistics
Matches: 193, Mismatches: 48, Indels: 17
0.75 0.19 0.07
Matches are distributed among these distances:
53 20 0.10
54 168 0.87
55 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTCGATTTGTG
Found at i:73580355 original size:81 final size:80
Alignment explanation
Indices: 73580269--73580571 Score: 234
Period size: 81 Copynumber: 3.8 Consensus size: 80
73580259 TCGATTAGCA
*
73580269 AAATTACCAAAATACCCCTATTTTGTAAAATTACCAAAACACCCCTAGTTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCAAA
73580334 ATACCCCTGATTTGTG
65 ATACCCCTGATTTGTG
** * * * * * ***
73580350 AAATTACTGAAATACCATCGACTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACC-CCTATTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCAAA
*
73580415 ATACCCCCGATTTGTG
65 ATACCCCTGATTTGTG
** * *** * * * * * **
73580431 AAATTACTGAAATACCCTTACAGGGTAGAATTACTAAAATA-ACCTTGTAGTGTGAAATTACTGA
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGT-TTGTGAAATTACCAA
* *
73580495 AATA-CCCTCGACTTGTA
64 AATACCCCT-GATTTGTG
* * ** * *
73580512 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCGA-TTAGTGAAATTAC
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTAC
73580572 TGAAATAACC
Statistics
Matches: 169, Mismatches: 47, Indels: 13
0.74 0.21 0.06
Matches are distributed among these distances:
80 18 0.11
81 147 0.87
82 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCAAAA
TACCCCTGATTTGTG
Found at i:73580596 original size:27 final size:27
Alignment explanation
Indices: 73580566--73580767 Score: 224
Period size: 27 Copynumber: 7.3 Consensus size: 27
73580556 CGATTAGTGA
* * *
73580566 AATTACTGAAATAACCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73580593 AATTACCGAAATACCGCTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73580620 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73580647 AATTACCGAAATATCCCTGTAGGGTAGAATTAG
1 AATTACCGAAATACCCCTGTA-GG--G---TAG
*
73580680 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73580707 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
73580734 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
73580761 AATTACC
1 AATTACC
73580768 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
27 120 0.81
28 2 0.01
30 2 0.01
32 2 0.01
33 22 0.15
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73580691 original size:33 final size:33
Alignment explanation
Indices: 73580644--73580738 Score: 130
Period size: 33 Copynumber: 3.1 Consensus size: 33
73580634 CCCTATAGGG
*
73580644 TAGAATTACCGAAATATCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
*
73580677 TAGAATTACTGAAATACCCCTGTA-GG--G---
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
73580704 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
73580737 TA
1 TA
73580739 TCGAGATACC
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
27 23 0.43
28 2 0.04
30 2 0.04
32 2 0.04
33 24 0.45
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (33 bp):
TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
Found at i:73580710 original size:87 final size:87
Alignment explanation
Indices: 73580589--73580765 Score: 257
Period size: 87 Copynumber: 2.0 Consensus size: 87
73580579 ACCCTGTAGG
* *
73580589 TTAGAATTACCGAAATACCGCTGTAGGGTTGAATTACCAAAATACCCCTATAGGGTAGAATTACC
1 TTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
*
73580654 GAAATATCCC-TGTAGGGTAGAA
66 GAAATA-CCCTTGTAGGGTAAAA
* * * *
73580676 TTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
1 TTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
* *
73580741 GAGATACCCTTGTGGGGTAAAA
66 GAAATACCCTTGTAGGGTAAAA
73580763 TTA
1 TTA
73580766 CCATTTTGCC
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 3 0.04
87 77 0.96
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (87 bp):
TTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
GAAATACCCTTGTAGGGTAAAA
Found at i:73580712 original size:60 final size:59
Alignment explanation
Indices: 73580566--73580738 Score: 232
Period size: 60 Copynumber: 3.0 Consensus size: 59
73580556 CGATTAGTGA
* *
73580566 AATTACTGAAATAACCCTGTAGGTTAGAATTACCGAAATACCGCTGTA-GG--G--TT-G
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC-CTGTAGGGTAGAATTAG
** *
73580620 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATATCCCTGTAGGGTAGAATTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGGGTAGAATTAG
73580680 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGGGTAGAATTA
73580739 TCGAGATACC
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
54 40 0.39
55 4 0.04
57 1 0.01
59 2 0.02
60 56 0.54
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (59 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTAG
Found at i:73581046 original size:24 final size:25
Alignment explanation
Indices: 73580970--73581039 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
73580960 AGGAAGTGCT
* * * *
73580970 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
73580995 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
73581020 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73581040 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:73581052 original size:24 final size:24
Alignment explanation
Indices: 73580995--73581066 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
73580985 TAGTTTACCG
73580995 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
73581019 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
73581043 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
73581067 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:73585929 original size:13 final size:13
Alignment explanation
Indices: 73585911--73585969 Score: 91
Period size: 13 Copynumber: 4.5 Consensus size: 13
73585901 CCAGGGACGG
73585911 GCGTGTGCCCTGA
1 GCGTGTGCCCTGA
73585924 GCGTGTGCCCTGA
1 GCGTGTGCCCTGA
*
73585937 GCGTGTGCCCTGG
1 GCGTGTGCCCTGA
* *
73585950 GCGTGTGCCTTGG
1 GCGTGTGCCCTGA
73585963 GCGTGTG
1 GCGTGTG
73585970 AAGTCTGCAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.03, C:0.27, G:0.44, T:0.25
Consensus pattern (13 bp):
GCGTGTGCCCTGA
Found at i:73589375 original size:19 final size:19
Alignment explanation
Indices: 73589353--73589391 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
73589343 AATTTGAGAC
73589353 AACGCAAGTGCCTTGAGTT
1 AACGCAAGTGCCTTGAGTT
73589372 AACGCAAGTGCCTTGAGTT
1 AACGCAAGTGCCTTGAGTT
73589391 A
1 A
73589392 TTGAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
AACGCAAGTGCCTTGAGTT
Found at i:73589701 original size:37 final size:37
Alignment explanation
Indices: 73589660--73589734 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
73589650 AGGACTGATG
73589660 GTTGTTTGTTATTCAGAGGAAAAATATGTGTACCAAA
1 GTTGTTTGTTATTCAGAGGAAAAATATGTGTACCAAA
73589697 GTTGTTTGTTATTCAGAGGAAAAATATGTGTACCAAA
1 GTTGTTTGTTATTCAGAGGAAAAATATGTGTACCAAA
73589734 G
1 G
73589735 AATTGAGAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (37 bp):
GTTGTTTGTTATTCAGAGGAAAAATATGTGTACCAAA
Found at i:73594273 original size:40 final size:41
Alignment explanation
Indices: 73594228--73594317 Score: 123
Period size: 40 Copynumber: 2.2 Consensus size: 41
73594218 CGGAATATAA
* *
73594228 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGC-CGCTAGCACAAATGCCTTCGGGTCTTAAC
*
73594268 CCGGATAT-AGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
73594308 CCGGATATAA
1 CCGGATATAA
73594318 TTTCCAGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.09
40 38 0.86
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:73594332 original size:40 final size:40
Alignment explanation
Indices: 73594244--73594355 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
73594234 ATAAGCATGT
* * *
73594244 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
73594284 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
73594324 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73594356 CATTCAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:73602253 original size:40 final size:41
Alignment explanation
Indices: 73602208--73602297 Score: 123
Period size: 40 Copynumber: 2.2 Consensus size: 41
73602198 CGGAATATAA
* *
73602208 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGC-CGCTAGCACAAATGCCTTCGGGTCTTAAC
*
73602248 CCGGATAT-AGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
73602288 CCGGATATAA
1 CCGGATATAA
73602298 TTTCCAGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.09
40 38 0.86
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:73602312 original size:40 final size:40
Alignment explanation
Indices: 73602224--73602335 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
73602214 ATAAGCATGT
* * *
73602224 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
73602264 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
73602304 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73602336 CATTCAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:73608040 original size:53 final size:53
Alignment explanation
Indices: 73607960--73608066 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
73607950 CTGAGTATCG
*
73607960 TAAGAGGAATTTCTTCATTAGGTTCAGGAGTGGCAATGCGAGGATCGGTTGCA
1 TAAGAGGAATTTCTTCATTAGGTTCAGGAGTGGAAATGCGAGGATCGGTTGCA
*
73608013 TAAGAGGAGTTTCTTCATTAGGTTCAGGAGTGGAAATGCGAGGATCGGTTGCA
1 TAAGAGGAATTTCTTCATTAGGTTCAGGAGTGGAAATGCGAGGATCGGTTGCA
73608066 T
1 T
73608067 CTAGTAGTAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.29
Consensus pattern (53 bp):
TAAGAGGAATTTCTTCATTAGGTTCAGGAGTGGAAATGCGAGGATCGGTTGCA
Found at i:73611248 original size:47 final size:47
Alignment explanation
Indices: 73611195--73611339 Score: 227
Period size: 47 Copynumber: 3.1 Consensus size: 47
73611185 TTAGGATTTT
* * *
73611195 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
73611242 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
* * * *
73611289 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
73611336 AATG
1 AATG
73611340 CGAAATGTGT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
Found at i:73611449 original size:46 final size:46
Alignment explanation
Indices: 73611313--73611449 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
73611303 GAACATGTAT
* * *
73611313 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGTTAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
73611359 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73611405 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73611450 TGTATATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73611459 original size:2 final size:2
Alignment explanation
Indices: 73611452--73611488 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73611442 ATGAGATGTG
73611452 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73611489 TGTGGCCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73614321 original size:41 final size:40
Alignment explanation
Indices: 73614268--73614437 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
73614258 AGTCCGACTC
*
73614268 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
73614307 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
73614347 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
73614392 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
73614431 TTTAGAC
1 -TTAGAC
73614438 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:73622648 original size:41 final size:40
Alignment explanation
Indices: 73622595--73622764 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
73622585 AGTCCGACTC
*
73622595 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * * *
73622634 TTAGACTACTGGCTCGAAGGCCCTTTG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
73622674 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
73622719 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
73622758 TTTAGAC
1 -TTAGAC
73622765 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 50 0.48
42 18 0.17
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:73636958 original size:28 final size:29
Alignment explanation
Indices: 73636860--73636957 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
73636850 AATGAGATTG
73636860 GCACTAA-TGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
73636887 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
73636916 GCACTAAGTGTGCGGGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
73636944 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73636958 GACTTACTGT
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
27 7 0.10
28 26 0.39
29 33 0.49
30 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:73644655 original size:27 final size:29
Alignment explanation
Indices: 73644557--73644654 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
73644547 AATGAGATTG
73644557 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
73644585 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
73644614 GCACTAAGTGTGCG-GTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
73644641 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73644655 GACTTACTGT
Statistics
Matches: 68, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.22
28 29 0.43
29 24 0.35
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:73647213 original size:15 final size:16
Alignment explanation
Indices: 73647193--73647231 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
73647183 AATTAGAAAT
73647193 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
73647208 ATGAAAAATTAATTAA
1 ATGAAAAGTTAATTAA
73647224 ATGAAAAG
1 ATGAAAAG
73647232 GAAAACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:73651137 original size:29 final size:28
Alignment explanation
Indices: 73651049--73651150 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
73651039 TACTCAATCA
* *
73651049 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
73651078 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
73651107 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
73651136 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
73651151 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:73659102 original size:29 final size:28
Alignment explanation
Indices: 73659016--73659116 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
73659006 TACTCAATCA
* *
73659016 CGCACACTTAGTGCCAT-GATTCAAGCC
1 CGCACACTTAGTGCCATACATTCAAGCT
* * * *
73659043 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
73659072 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
73659101 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73659117 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 16 0.27
28 2 0.03
29 41 0.69
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:73666952 original size:29 final size:27
Alignment explanation
Indices: 73666865--73666965 Score: 94
Period size: 29 Copynumber: 3.6 Consensus size: 27
73666855 TACTCAATCA
* *
73666865 CGCACACTTAGTGCCTATGATTCAAGCC
1 CGCACACTTAGTGCCTA-CATTCAAGCT
* * * *
73666893 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCC-TACA-TTCAAGCT
73666922 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCC-TACATT-CAAGCT
*
73666951 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
73666966 AATCTCGTCA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
28 16 0.27
29 43 0.73
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.22
Consensus pattern (27 bp):
CGCACACTTAGTGCCTACATTCAAGCT
Found at i:73673773 original size:40 final size:39
Alignment explanation
Indices: 73673728--73673857 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
73673718 CGGAATACAA
73673728 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
73673768 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
73673808 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
73673848 CCGGATATAA
1 CCGGATATAA
73673858 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:73681834 original size:40 final size:39
Alignment explanation
Indices: 73681789--73681918 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
73681779 CGGAATACAA
73681789 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
73681829 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
73681869 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
73681909 CCGGATATAA
1 CCGGATATAA
73681919 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:73686304 original size:40 final size:40
Alignment explanation
Indices: 73686259--73686388 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73686249 CGGAATACAA
73686259 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73686299 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73686339 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
73686379 CCGGATATAA
1 CCGGATATAA
73686389 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73693021 original size:40 final size:40
Alignment explanation
Indices: 73692966--73693131 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
73692956 GGACTAAGAT
* * *
73692966 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73693006 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73693046 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
73693086 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
73693125 TCGAAGG
1 CCGAAGG
73693132 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 14 0.12
40 105 0.88
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:73699940 original size:2 final size:2
Alignment explanation
Indices: 73699933--73699960 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
73699923 CGGCTCTAGC
73699933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73699961 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73700724 original size:41 final size:40
Alignment explanation
Indices: 73700667--73700845 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
73700657 CGAATGGTAT
* * *
73700667 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
73700708 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
73700748 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
73700788 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
73700828 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
73700846 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.76
41 26 0.22
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:73708228 original size:27 final size:27
Alignment explanation
Indices: 73708174--73708260 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
73708164 CCACATATAT
* * * *
73708174 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
*
73708200 ATATCTGTATCTGGTGACTTCGTCCCA
1 ATATCTGTATCTGGTGACTTCGTCACA
73708227 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
73708254 ATATCTG
1 ATATCTG
73708261 GCAGCCTCGT
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
26 8 0.15
27 46 0.85
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACTTCGTCACA
Found at i:73709014 original size:27 final size:27
Alignment explanation
Indices: 73708984--73709282 Score: 347
Period size: 27 Copynumber: 11.3 Consensus size: 27
73708974 GTTATAGTAT
* *
73708984 TTTTACCCTACCGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
73709011 TTTTACCCTACAGGCGCATTGCGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
73709038 TTTTACCCTACAGGGGTATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
73709065 TTTTACCCTACAGAGGCATTACGATCA
1 TTTTACCCTACAGGGGCATTACGGTCA
73709092 TTTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
73709119 TTTTACCCTATAGGGGCATTACAGTC-
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
73709145 ----ACCCTATAGGGACATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * *
73709168 TTTTACCCTACAAGGGCATTACTGTTA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * *
73709195 ATTTACCCTATAGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * **
73709222 TTTTACCCTACAAGAGTGTTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* **
73709249 TTTTACCCTCCAGGGGTGTTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
73709276 TTTTACC
1 TTTTACC
73709283 TATTTTGGGG
Statistics
Matches: 231, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
22 20 0.09
27 211 0.91
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCATTACGGTCA
Found at i:73709151 original size:22 final size:22
Alignment explanation
Indices: 73709123--73709167 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
73709113 CGGTCATTTT
*
73709123 ACCCTATAGGGGCATTACAGTC
1 ACCCTATAGGGACATTACAGTC
*
73709145 ACCCTATAGGGACATTACGGTC
1 ACCCTATAGGGACATTACAGTC
73709167 A
1 A
73709168 TTTTACCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (22 bp):
ACCCTATAGGGACATTACAGTC
Found at i:73709200 original size:103 final size:104
Alignment explanation
Indices: 73708985--73709233 Score: 315
Period size: 103 Copynumber: 2.4 Consensus size: 104
73708975 TTATAGTATT
* * *
73708985 TTTACCCTACCGGGGCATTACAGTCATTTTACCCTACAGGCGCATTGCGGTCATTTTACCCTACA
1 TTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGCGCATTACAGTC----TACCCTACA
** *
73709050 GGGGTATTACGGTCATTTTACCCTACAGAGGCATTACGATCAT
62 GGGACATTACGGTCATTTTACCCTACAGAGGCATTACGATCAA
* * * *
73709093 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGCATTACAGTC-ACCCTATAGGGA
1 TTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGCGCATTACAGTCTACCCTACAGGGA
*
73709157 CATTACGGTCATTTTACCCTACA-AGGGCATTACTG-TTAA
66 CATTACGGTCATTTTACCCTACAGA-GGCATTAC-GATCAA
*
73709196 TTTACCCTATAGGGGCATTACAGTCATTTTACCCTACA
1 TTTACCCTACAGGGGCATTACAGTCATTTTACCCTACA
73709234 AGAGTGTTAC
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
102 1 0.01
103 77 0.62
104 1 0.01
108 46 0.37
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (104 bp):
TTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGCGCATTACAGTCTACCCTACAGGGA
CATTACGGTCATTTTACCCTACAGAGGCATTACGATCAA
Found at i:73709274 original size:157 final size:156
Alignment explanation
Indices: 73709000--73709282 Score: 408
Period size: 157 Copynumber: 1.8 Consensus size: 156
73708990 CCTACCGGGG
* * * *
73709000 CATTACAGTCATTTTACCCTACAGGCGCATTGCGGTCATTTTACCCTACAGGGGTATTACGGTCA
1 CATTACAGTCATTTTACCCTACAGGCGCATTACGGTCAATTTACCCTACAGGGGCATTACAGTCA
73709065 TTTTACCCTACAGAGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTAT
66 TTTTACCCTACAGAGG-ATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTAT
73709130 AGGGGCATTACAGTCACCCTATAGGGA
130 AGGGGCATTACAGTCACCCTATAGGGA
* * * *
73709157 CATTACGGTCATTTTACCCTACAAGG-GCATTACTGTTAATTTACCCTATAGGGGCATTACAGTC
1 CATTACAGTCATTTTACCCTAC-AGGCGCATTACGGTCAATTTACCCTACAGGGGCATTACAGTC
* * **
73709221 ATTTTACCCTACAAGAGTG-TTACGGTCATTTTACCCTCCAGGGGTGTTACGGTCATTTTACC
65 ATTTTACCCTAC-AGAG-GATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
73709283 TATTTTGGGG
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
157 103 0.93
158 7 0.06
159 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (156 bp):
CATTACAGTCATTTTACCCTACAGGCGCATTACGGTCAATTTACCCTACAGGGGCATTACAGTCA
TTTTACCCTACAGAGGATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATA
GGGGCATTACAGTCACCCTATAGGGA
Found at i:73712869 original size:12 final size:13
Alignment explanation
Indices: 73712852--73712883 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73712842 ATATCACATT
73712852 TCAAAAC-ATGCA
1 TCAAAACTATGCA
73712864 TCAAAACTATGCA
1 TCAAAACTATGCA
73712877 -CAAAACT
1 TCAAAACT
73712884 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:73720016 original size:12 final size:13
Alignment explanation
Indices: 73719999--73720030 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73719989 ATAGCACATT
73719999 TCAAAAC-ATGCA
1 TCAAAACTATGCA
73720011 TCAAAACTATGCA
1 TCAAAACTATGCA
73720024 -CAAAACT
1 TCAAAACT
73720031 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:73722445 original size:33 final size:34
Alignment explanation
Indices: 73722402--73722472 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
73722392 ACAGTGCATG
* * *
73722402 CAGTAACAGTCTGAGCCTGAGCCTTATTCAGTAT
1 CAGTAACAGTCTGAGCCTGAGCCCTATACAGTAA
* *
73722436 CAGT-ACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGAGCCTGAGCCCTATACAGTAA
73722469 CAGT
1 CAGT
73722473 GTGGGCCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (34 bp):
CAGTAACAGTCTGAGCCTGAGCCCTATACAGTAA
Found at i:73722479 original size:28 final size:27
Alignment explanation
Indices: 73722436--73722492 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
73722426 TATTCAGTAT
* *
73722436 CAGTACAGTCTGGGCCTTAGCCCTATA
1 CAGTACAGTCTGGGCCTAAGCCCAATA
*
73722463 CAGTAACAGTGTGGGCCTAAGCCCAATA
1 CAGT-ACAGTCTGGGCCTAAGCCCAATA
73722491 CA
1 CA
73722493 ATATCAGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCCAATA
Found at i:73722500 original size:28 final size:28
Alignment explanation
Indices: 73722440--73722500 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
73722430 CAGTATCAGT
* * *
73722440 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
73722468 ACAGTGTGGGCCTAAGCCCAATACAATA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
73722496 TCAGT
1 ACAGT
73722501 ACAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAATACAATA
Found at i:73722732 original size:27 final size:27
Alignment explanation
Indices: 73722674--73722741 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
73722664 TGTGGTAAAG
* *
73722674 CCACCAGTATCAGTAATTGTGGCACAA
1 CCACCAGTAACAGTAATTGTGACACAA
*
73722701 CCACCAGTAACAGTGAA-TGTGACATAA
1 CCACCAGTAACAGT-AATTGTGACACAA
* *
73722728 TCACCACT-ACAGTA
1 CCACCAGTAACAGTA
73722742 CTTCCTCCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (27 bp):
CCACCAGTAACAGTAATTGTGACACAA
Found at i:73722964 original size:53 final size:54
Alignment explanation
Indices: 73722877--73722997 Score: 156
Period size: 53 Copynumber: 2.3 Consensus size: 54
73722867 GGGCATAATC
* * * *
73722877 ATCATTTTACC-ATACGGGGGTATTACGGTAATTTTACCCTAGAGGGACATTACG
1 ATCATTTTACCTATAC-GGGGCACTACGGTAATTTTACCCTACAAGGACATTACG
* * *
73722931 GTCATTTTACCTATA-GGGGCACTACGGTCATTTTACCCTACAAGGACGTTACG
1 ATCATTTTACCTATACGGGGCACTACGGTAATTTTACCCTACAAGGACATTACG
73722984 ATCATTTTACCTAT
1 ATCATTTTACCTAT
73722998 TTTGGGGTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 45 0.78
54 10 0.17
55 3 0.05
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (54 bp):
ATCATTTTACCTATACGGGGCACTACGGTAATTTTACCCTACAAGGACATTACG
Found at i:73722983 original size:27 final size:27
Alignment explanation
Indices: 73722878--73722994 Score: 119
Period size: 27 Copynumber: 4.4 Consensus size: 27
73722868 GGCATAATCA
* * **
73722878 TCATTTTACCATACGGGGGTATTACGG
1 TCATTTTACCCTACAGGGACATTACGG
* *
73722905 TAATTTTACCCTAGAGGGACATTACGG
1 TCATTTTACCCTACAGGGACATTACGG
* * *
73722932 TCATTTTA-CCTATAGGGGCACTACGG
1 TCATTTTACCCTACAGGGACATTACGG
* * *
73722958 TCATTTTACCCTACAAGGACGTTACGA
1 TCATTTTACCCTACAGGGACATTACGG
73722985 TCATTTTACC
1 TCATTTTACC
73722995 TATTTTGGGG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 23 0.32
27 50 0.68
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGACATTACGG
Found at i:73748547 original size:43 final size:42
Alignment explanation
Indices: 73748499--73748662 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 42
73748489 GAAGCATATA
* *
73748499 CAATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAA-AT
* * *
73748542 CAATGCC-ACTGTCCCAGACAAGGTCTTACATGTAATC-AGAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAAAT
* * * * *
73748583 ACGATGCTGAA-GTCCCAGACATGGTCTTACACGTAAAACAGAAGT
1 -CAATGC-CAACGTCCCAGACATGGTCTTACATG-AAATCA-AAAT
* ** *
73748628 CGATGCCAACGTCCCAGATGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAA
73748663 ACACATATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 39 0.40
44 27 0.28
45 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAAAT
Found at i:73758974 original size:43 final size:42
Alignment explanation
Indices: 73758926--73759089 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 42
73758916 GAAGCATATA
*
73758926 CAATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAA-AT
** * * *
73758969 CAATGCCATTGTCCTAAACAG-GGTCTTACATGAAATC-AGAT
1 CAATGCCAACGTCCCAGAC-GTGGTCTTACATGAAATCAAAAT
* * * * *
73759010 ACGATGCCGAA-GTCCCAGACATGGTCTTACACGTAAAACAGAAGT
1 -CAATGCC-AACGTCCCAGACGTGGTCTTACATG-AAATCA-AAAT
* * *
73759055 CGATGCCAACATCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAA
73759090 ACACATATCG
Statistics
Matches: 96, Mismatches: 17, Indels: 16
0.74 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 24 0.25
43 40 0.42
44 28 0.29
45 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAAAT
Found at i:73771185 original size:23 final size:23
Alignment explanation
Indices: 73771155--73771201 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
73771145 CAATATAAGA
*
73771155 TAGTTCATGATAGACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
73771178 TAGTTCATGATAAACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
73771201 T
1 T
73771202 TTGGCGACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (23 bp):
TAGTTCATGATAAACTTTCCCTT
Found at i:73772176 original size:26 final size:25
Alignment explanation
Indices: 73772140--73772191 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
73772130 TAGCATTCTA
* *
73772140 TGAAACGGAAGCCTTTGTGGCGTATC
1 TGAAAAGGAAGCCTATGTGGCG-ATC
73772166 TGAAAAGGAAGCCTATGTGGCGATC
1 TGAAAAGGAAGCCTATGTGGCGATC
73772191 T
1 T
73772192 ATGGAAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (25 bp):
TGAAAAGGAAGCCTATGTGGCGATC
Found at i:73772447 original size:27 final size:27
Alignment explanation
Indices: 73772404--73772479 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
73772394 TGATATATAT
* *
73772404 ATGGCAAACTCTGAAGGAATGGAACAC
1 ATGGCAAAATCTAAAGGAATGGAACAC
* *
73772431 ATGGCAAAATCTAAAGGAATGGAATAT
1 ATGGCAAAATCTAAAGGAATGGAACAC
73772458 ATGG-AAAACTCTAAAGGAATGG
1 ATGGCAAAA-TCTAAAGGAATGG
73772480 TTCTATTGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.45, C:0.12, G:0.25, T:0.18
Consensus pattern (27 bp):
ATGGCAAAATCTAAAGGAATGGAACAC
Found at i:73789673 original size:15 final size:15
Alignment explanation
Indices: 73789653--73789682 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73789643 AGCTCATTAT
73789653 TCATCAATTATGAAA
1 TCATCAATTATGAAA
73789668 TCATCAATTATGAAA
1 TCATCAATTATGAAA
73789683 CGATTCCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (15 bp):
TCATCAATTATGAAA
Found at i:73792924 original size:27 final size:28
Alignment explanation
Indices: 73792868--73792937 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73792858 AAATTTGTAC
73792868 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73792896 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73792923 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73792938 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73792948 original size:27 final size:27
Alignment explanation
Indices: 73792868--73792949 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73792858 AAATTTGTAC
* *
73792868 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73792896 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73792923 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73792950 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73799071 original size:28 final size:28
Alignment explanation
Indices: 73799002--73799102 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73798992 GACAAGATTG
* * * *
73799002 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
73799032 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73799060 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
73799089 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73799103 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73807023 original size:28 final size:28
Alignment explanation
Indices: 73806954--73807054 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73806944 GACAAGATTG
* * * *
73806954 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
73806984 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73807012 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
73807041 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73807055 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73811832 original size:27 final size:28
Alignment explanation
Indices: 73811776--73811845 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73811766 AAATTTGTAC
73811776 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73811804 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73811831 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73811846 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73811856 original size:27 final size:27
Alignment explanation
Indices: 73811776--73811857 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73811766 AAATTTGTAC
* *
73811776 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73811804 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73811831 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73811858 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73823784 original size:408 final size:407
Alignment explanation
Indices: 73822915--73824106 Score: 1896
Period size: 408 Copynumber: 2.9 Consensus size: 407
73822905 TGTAATTGTT
* * *
73822915 GAGTTAAAGAATTATGTGATAAGCTGAATCCCCTAGT-AAAAAATAGGCATAATAAACGGACATG
1 GAGTCAAAGAATCATGTGATAAGTTGAATCCCCTAGTAAAAAAATAGGCATAATAAACGGACATG
** *
73822979 TATGTAACTAATTTTATGCAAGGGAAAATTTAAATAA-GAAACTAAGTTTAGATGAAAGATAAAC
66 TATGTAACTAATTTTATGCAAGGCCAAATTTAAA-AAGGAAACTGAGTTTAGATGAAAGATAAAC
* * * * * **
73823043 TAAGTATATTAGGAGGTAATTTCTATAGTCAGAATTTCATAAGTGATTAGAATTTTTATTTTCAG
130 TAAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTTG
*
73823108 GGCAATATTTTTTGTGTTACTTTTGCTAAACAAGCTTATAAAGCTTGAGAAAATTTTTAGAAATA
195 GGCAATATTTTTTGTGTTACTTTTGCTAAACAAGCTTATGAAGCTTGAGAAAATTTTTAGAAATA
* * * * *
73823173 GAAGATTGCTGAGAATTGAAGTACAAAATATCATGTACATAGTTTGGCATTACTAAGGTAATTAG
260 GAAGATTGCTGAGAACTGAAGTACAGAATATGATATACATAGTTTGGCATTACTAAGGTAATTAT
* *
73823238 GTTGTTGTGGCAATTCATGCATATTTTGCTTGAGGACAAGCAATAACTTAGGTTTGGGGGTGTGA
325 GTTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTGGGAGTGTGA
73823303 TAATTCTTGAAAAGTGTC
390 TAATTCTTGAAAAGTGTC
* * *
73823321 GAGTCAAAGAATCATGTGATAA-TCTGAATCCCCTAGTAAAATATTAGGCATAATAAATGGACAT
1 GAGTCAAAGAATCATGTGATAAGT-TGAATCCCCTAGTAAAAAAATAGGCATAATAAACGGACAT
*
73823385 GTATGTAACTAATTTTATGCAAGGCCAAATTTTAAAAAGGAAACTGAGTTTTGATGAAAGATAAA
65 GTATGTAACTAATTTTATGCAAGGCCAAA-TTTAAAAAGGAAACTGAGTTTAGATGAAAGATAAA
73823450 CTAAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTT
129 CTAAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTT
*
73823515 GGGCAATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAAT
194 GGGCAATATTTTTTGTGTTACTTTTGCTAAACAAGCTTATGAAGCTTGAGAAAATTTTTAGAAAT
* * * * * *
73823580 AAAAGATTGCTAAGAACTGAAGTATAGGATATGATCTACATAGTTTGGCATGACTAAGGTAATTA
259 AGAAGATTGCTGAGAACTGAAGTACAGAATATGATATACATAGTTTGGCATTACTAAGGTAATTA
* *
73823645 TATTGTTGTGGCAATTCATGCATATCTTT-CTTGAGGATAAGCAATAACTTAGGCTTGGGAGTGT
324 TGTTGTTGTGGCAATTCATGCATAT-TTTGCTTGAGGATAAGCAATAACTTAGGTTTGGGAGTGT
73823709 GATAATTCTTGAAAAGTGTC
388 GATAATTCTTGAAAAGTGTC
73823729 GAGTCAAAGAATCATGTGATAAGTTGAATCCCCTAGTAAAAAAATAGGCATAATAAACGGAC---
1 GAGTCAAAGAATCATGTGATAAGTTGAATCCCCTAGTAAAAAAATAGGCATAATAAACGGACATG
* * *
73823791 -ATGTAACTGATTTTATGCAAGACCAAATTTAAAAAGGAAACTGAGTTTAAATGAAAGATAAACT
66 TATGTAACTAATTTTATGCAAGGCCAAATTTAAAAAGGAAACTGAGTTTAGATGAAAGATAAACT
*
73823855 AAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTAATTTTTTGG
131 AAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTTGG
* * * *
73823920 GCAATATTTTTTGTATTACTTTTGCTAAATAAGCTTATGAAGCTTGAGCAAATTTTTATAAATAG
196 GCAATATTTTTTGTGTTACTTTTGCTAAACAAGCTTATGAAGCTTGAGAAAATTTTTAGAAATAG
*
73823985 AAGATTGCTGAGAACTGAAGTACAGAATATGATATACATGGTTTGGCATTACTAAGGTAATTATG
261 AAGATTGCTGAGAACTGAAGTACAGAATATGATATACATAGTTTGGCATTACTAAGGTAATTATG
*
73824050 TTGTTCTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTGGG
326 TTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTGGG
73824107 GGTATTGTAA
Statistics
Matches: 723, Mismatches: 56, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
402 3 0.00
403 267 0.37
404 25 0.03
406 33 0.05
407 52 0.07
408 339 0.47
409 4 0.01
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (407 bp):
GAGTCAAAGAATCATGTGATAAGTTGAATCCCCTAGTAAAAAAATAGGCATAATAAACGGACATG
TATGTAACTAATTTTATGCAAGGCCAAATTTAAAAAGGAAACTGAGTTTAGATGAAAGATAAACT
AAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTTGG
GCAATATTTTTTGTGTTACTTTTGCTAAACAAGCTTATGAAGCTTGAGAAAATTTTTAGAAATAG
AAGATTGCTGAGAACTGAAGTACAGAATATGATATACATAGTTTGGCATTACTAAGGTAATTATG
TTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTGGGAGTGTGAT
AATTCTTGAAAAGTGTC
Found at i:73834982 original size:27 final size:26
Alignment explanation
Indices: 73834934--73835034 Score: 88
Period size: 27 Copynumber: 4.0 Consensus size: 26
73834924 AACCCCAAAA
*
73834934 TAGGTAAAAT-AATCGTAA-ACCCCTG
1 TAGGTAAAATGACT-GTAATACCCCTG
73834959 TAGGGTAAAATGACTGTAATA-CCCT-
1 TA-GGTAAAATGACTGTAATACCCCTG
* * *
73834984 T--GTAACATGACCGTAATGCCCCTG
1 TAGGTAAAATGACTGTAATACCCCTG
*
73835008 TAGAGTAAAATGACTGTGATACCCCTG
1 TAG-GTAAAATGACTGTAATACCCCTG
73835035 CATGGAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
22 14 0.23
23 4 0.07
24 1 0.02
25 3 0.05
26 16 0.27
27 22 0.37
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGTAAAATGACTGTAATACCCCTG
Found at i:73834993 original size:22 final size:22
Alignment explanation
Indices: 73834963--73835009 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
73834953 CCCCTGTAGG
* *
73834963 GTAAAATGACTGTAATACCCTT
1 GTAAAATGACCGTAATACCCCT
* *
73834985 GTAACATGACCGTAATGCCCCT
1 GTAAAATGACCGTAATACCCCT
73835007 GTA
1 GTA
73835010 GAGTAAAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (22 bp):
GTAAAATGACCGTAATACCCCT
Found at i:73835320 original size:26 final size:26
Alignment explanation
Indices: 73835247--73835314 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
73835237 TTTTTGATAG
* * * *
73835247 TGGCAGCTTTGCGACACTTACTATTTC
1 TGGCAGCTATGCTACA-TTATTATTAC
*
73835274 TGGCAGCTATGCTGCATTATTATTAC
1 TGGCAGCTATGCTACATTATTATTAC
*
73835300 TGGCAGCTTTGCTAC
1 TGGCAGCTATGCTAC
73835315 GATATTGTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
TGGCAGCTATGCTACATTATTATTAC
Found at i:73836450 original size:10 final size:10
Alignment explanation
Indices: 73836435--73836460 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
73836425 ATTAAATTCA
73836435 AAACTTTTCC
1 AAACTTTTCC
73836445 AAACTTTTCC
1 AAACTTTTCC
73836455 AAACTT
1 AAACTT
73836461 CTTATCAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (10 bp):
AAACTTTTCC
Found at i:73845037 original size:59 final size:59
Alignment explanation
Indices: 73844968--73845080 Score: 226
Period size: 59 Copynumber: 1.9 Consensus size: 59
73844958 CCACATAGGT
73844968 ATTTATATAGATATAAATATATATTTTTGAAAGATATGTTTGATCTTGCATATTTAGCC
1 ATTTATATAGATATAAATATATATTTTTGAAAGATATGTTTGATCTTGCATATTTAGCC
73845027 ATTTATATAGATATAAATATATATTTTTGAAAGATATGTTTGATCTTGCATATT
1 ATTTATATAGATATAAATATATATTTTTGAAAGATATGTTTGATCTTGCATATT
73845081 CGGCTAAATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (59 bp):
ATTTATATAGATATAAATATATATTTTTGAAAGATATGTTTGATCTTGCATATTTAGCC
Found at i:73846032 original size:39 final size:39
Alignment explanation
Indices: 73845989--73846165 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
73845979 GTGTGAGATA
* * *
73845989 TATATCCGGGCTAATTCCCGAAGGCGTTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
73846028 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
**
73846067 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCCAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
73846106 TATATCTGGGCTAAGTCCCAAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
73846144 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
73846166 CATGCTTTGT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 19 0.16
39 95 0.79
40 7 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:73853595 original size:46 final size:46
Alignment explanation
Indices: 73853477--73853599 Score: 210
Period size: 46 Copynumber: 2.7 Consensus size: 46
73853467 TACATTTCAC
* * *
73853477 GAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAAT
*
73853523 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAAT
73853569 GAACTCGGACTCAACTCAACGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGTTCGGATG
73853600 CCCAAATATC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAAT
Found at i:73856905 original size:40 final size:40
Alignment explanation
Indices: 73856808--73856986 Score: 178
Period size: 40 Copynumber: 4.5 Consensus size: 40
73856798 CGAATGGTGT
* * * * *
73856808 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * * *
73856849 TCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
73856889 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
73856929 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
73856969 CCGGGTTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
73856987 ACAATCGAGC
Statistics
Matches: 110, Mismatches: 28, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
40 87 0.79
41 23 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:73856955 original size:80 final size:80
Alignment explanation
Indices: 73856808--73857000 Score: 208
Period size: 80 Copynumber: 2.4 Consensus size: 80
73856798 CGAATGGTGT
* * * * * *
73856808 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATTCGGGTCAACTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
73856873 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * *
73856889 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
73856953 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
73856969 CCGGGTTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT
73857001 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:73857007 original size:40 final size:40
Alignment explanation
Indices: 73856859--73857012 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 40
73856849 TCGGGTCAAC
* * * * * *
73856859 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGTTATG
* * * *
73856899 TCCCGAAGGCATTCGTGCGAGTTATTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGG-TTATG
* *
73856939 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGTTATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGTTATG
* * * *
73856979 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
73857013 TTAAATTCCG
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 5 0.05
40 84 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGTTATG
Found at i:73860526 original size:20 final size:20
Alignment explanation
Indices: 73860501--73860540 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73860491 ATTTAAAAAG
73860501 GTCAGGAGTCGTCACACTAT
1 GTCAGGAGTCGTCACACTAT
73860521 GTCAGGAGTCGTCACACTAT
1 GTCAGGAGTCGTCACACTAT
73860541 CACAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (20 bp):
GTCAGGAGTCGTCACACTAT
Found at i:73862060 original size:93 final size:93
Alignment explanation
Indices: 73861948--73862118 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
73861938 CGCCCATAAG
* * * *
73861948 CGAAGTCGAACTCAACTCAAC-AGGCTC-GAGCGTTCACATGCATAAGTGGACTCGGACTCAACT
1 CGAACTCGAACTCAACTCAACGA-GCTCGGA-CGCTCACATCCATAAGTGAACTCGGACTCAACT
73862011 CAACGAGTTCGGATGCCTAGTTACATTTCA
64 CAACGAGTTCGGATGCCTAGTTACATTTCA
* * *
73862041 CGAACTCGAACTCAGCTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
73862106 ACGAGTTCGGATG
66 ACGAGTTCGGATG
73862119 TTCGCATCCA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
93 66 0.96
94 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:73862106 original size:46 final size:46
Alignment explanation
Indices: 73861988--73862151 Score: 197
Period size: 46 Copynumber: 3.5 Consensus size: 46
73861978 CGTTCACATG
* * * *
73861988 CATAAGTGGACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCGCATC
* * * * *
73862034 CATTTCA-CGAACTCGAACTCAGCTCAACGAGTTCGGACGCTCGCATC
1 CA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATC
*
73862081 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATC
73862127 CATAAGTGAACTCGGACTCAACTCA
1 CATAAGTGAACTCGGACTCAACTCA
73862152 GACTCAACTC
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.02
46 65 0.66
47 30 0.30
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATC
Found at i:73864315 original size:42 final size:42
Alignment explanation
Indices: 73864281--73864363 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
73864271 GGTTTTATAT
*
73864281 GAAGTTTCATATCGATGCCATATCCCAAATATGGTCTTACAC
1 GAAGTCTCATATCGATGCCATATCCCAAATATGGTCTTACAC
* * * *
73864323 GCAGTCTCATGTTGATGCCGTATCCCAAATATGG-CTTACAC
1 GAAGTCTCATATCGATGCCATATCCCAAATATGGTCTTACAC
73864364 ATTGTCTCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 7 0.19
42 29 0.81
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
GAAGTCTCATATCGATGCCATATCCCAAATATGGTCTTACAC
Found at i:73864373 original size:41 final size:42
Alignment explanation
Indices: 73864294--73864373 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
73864284 GTTTCATATC
*
73864294 GATGCCATATCCCAAATATGGTCTTACACGCAGTCTCATGTT
1 GATGCCATATCCCAAATATGGTCTTACACACAGTCTCATGTT
* **
73864336 GATGCCGTATCCCAAATATGG-CTTACACATTGTCTCAT
1 GATGCCATATCCCAAATATGGTCTTACACACAGTCTCAT
73864374 TAACCCTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 14 0.41
42 20 0.59
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (42 bp):
GATGCCATATCCCAAATATGGTCTTACACACAGTCTCATGTT
Found at i:73867152 original size:49 final size:50
Alignment explanation
Indices: 73867094--73867191 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 50
73867084 GATAGCCATA
* * *
73867094 TAACGGGAAGTTCAAGCA-AGCCAT-ATCGAGAAGCTCACATAGAGCTAAT
1 TAACAGGAAGCTCAAGAAGAGCCATAATCGAGAAGCTCACA-AGAGCTAAT
* * *
73867143 TAACAGGAAGCTCACGAAGAGCCGTAATCGAGAAGCTCATAAGAGCTAA
1 TAACAGGAAGCTCAAGAAGAGCCATAATCGAGAAGCTCACAAGAGCTAA
73867192 GTTGTGTCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 14 0.34
50 13 0.32
51 14 0.34
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.16
Consensus pattern (50 bp):
TAACAGGAAGCTCAAGAAGAGCCATAATCGAGAAGCTCACAAGAGCTAAT
Found at i:73869570 original size:40 final size:40
Alignment explanation
Indices: 73869496--73869673 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
73869486 AAACCAAGTA
* *
73869496 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73869535 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73869575 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73869615 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73869655 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73869674 TTATCATCCG
Statistics
Matches: 130, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.89
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73872754 original size:79 final size:81
Alignment explanation
Indices: 73872657--73872811 Score: 217
Period size: 79 Copynumber: 1.9 Consensus size: 81
73872647 CCTGGTTATA
* * * *
73872657 GTAATTCGCACAATTGCCTTCGGGAACTAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTT-GG
1 GTAACTCGCACAAATGCCTTCGGGAA-TAGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGG
73872719 GACTTAACCCGGTTTTG
65 GACTTAACCCGGTTTTG
* *
73872736 GTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGG
1 GTAACTCGCACAAATGCCTTCGGGAATAGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGG
*
73872801 ACTTAGCCCGG
66 ACTTAACCCGG
73872812 ATACCATTCG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 13 0.20
81 13 0.20
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
GTAACTCGCACAAATGCCTTCGGGAATAGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGG
ACTTAACCCGGTTTTG
Found at i:73872811 original size:41 final size:40
Alignment explanation
Indices: 73872638--73872813 Score: 189
Period size: 40 Copynumber: 4.4 Consensus size: 40
73872628 GATTGTCGTT
* * * *
73872638 GGGACATAGCCTGG-TTATAGTAATTCGCACAATTGCCTTC
1 GGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC
73872678 GGGAAC-TAGCCCGGATTTAGTAACTCGCACAAATGCCTT-
1 GGG-ACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* * *
73872717 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* * * *
73872757 GGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTC
1 GGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTC
73872798 GGGACTTAGCCCGGAT
1 GGGACTTAGCCCGGAT
73872814 ACCATTCGAA
Statistics
Matches: 115, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.29
40 48 0.42
41 31 0.27
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
Found at i:73879735 original size:28 final size:28
Alignment explanation
Indices: 73879666--73879766 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73879656 GACAAGATTG
* * * *
73879666 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
73879696 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73879724 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
73879753 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73879767 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73879760 original size:29 final size:28
Alignment explanation
Indices: 73879695--73879766 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
73879685 AAAATTGTAC
*
73879695 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
73879723 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
73879752 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73879767 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:73887526 original size:28 final size:29
Alignment explanation
Indices: 73887495--73887566 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
73887485 AAAATTGTAC
*
73887495 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATGTATAT
73887523 AGCACTAAGTGTGCGAGCTGAATGTATAT
1 AGCACTAAGTGTGCGAGCTGAATGTATAT
73887552 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73887567 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATGTATAT
Found at i:73893931 original size:40 final size:39
Alignment explanation
Indices: 73893840--73893990 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
73893830 ATAACCATGT
* *
73893840 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
73893880 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
73893920 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
73893960 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
73893991 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:73893974 original size:80 final size:80
Alignment explanation
Indices: 73893840--73893989 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
73893830 ATAACCATGT
*
73893840 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73893904 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
73893920 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73893983 CCCGGAT
64 CCCGGAT
73893990 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73896188 original size:43 final size:43
Alignment explanation
Indices: 73896107--73896192 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
73896097 AAATCGTACA
* **
73896107 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
73896150 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATATCG
73896193 GAATCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:73906161 original size:43 final size:43
Alignment explanation
Indices: 73906080--73906161 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
73906070 AAATCATACA
* **
73906080 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
* *
73906123 ATGCC-ACTGTCCCAGGCAGGGTCTTACTTGTAAACACAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAAACACAT
73906162 GTCGGATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:73910319 original size:7 final size:7
Alignment explanation
Indices: 73910307--73910353 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
73910297 TTGAAGACTT
73910307 TTATTTA
1 TTATTTA
73910314 TTATTTA
1 TTATTTA
73910321 TTATTTA
1 TTATTTA
73910328 TTATTT-
1 TTATTTA
*
73910334 TTACTT-
1 TTATTTA
*
73910340 TTATCT-
1 TTATTTA
73910346 TTATTTA
1 TTATTTA
73910353 T
1 T
73910354 CTTTTTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 14 0.40
7 21 0.60
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:73910326 original size:14 final size:13
Alignment explanation
Indices: 73910305--73910353 Score: 64
Period size: 14 Copynumber: 3.8 Consensus size: 13
73910295 TTTTGAAGAC
73910305 TTTTATTTATTAT
1 TTTTATTTATTAT
73910318 TTATTATTTATTAT
1 TT-TTATTTATTAT
*
73910332 TTTTACTT-TTAT
1 TTTTATTTATTAT
*
73910344 CTTTATTTAT
1 TTTTATTTAT
73910354 CTTTTTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 10 0.32
13 8 0.26
14 13 0.42
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTTATTAT
Found at i:73917479 original size:23 final size:23
Alignment explanation
Indices: 73917453--73917500 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
73917443 TGCTGCAGGC
73917453 TTAACATTATTATTT-CCATAACA
1 TTAACATTATT-TTTGCCATAACA
73917476 TTAACATTATTTTTGCCATAACA
1 TTAACATTATTTTTGCCATAACA
73917499 TT
1 TT
73917501 GATCGTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.35, C:0.17, G:0.02, T:0.46
Consensus pattern (23 bp):
TTAACATTATTTTTGCCATAACA
Found at i:73925981 original size:2 final size:2
Alignment explanation
Indices: 73925974--73925998 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73925964 GAGACTAGTC
73925974 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73925999 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73928031 original size:30 final size:30
Alignment explanation
Indices: 73927997--73928057 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73927987 TCCTTAACTC
73927997 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
73928027 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
73928057 A
1 A
73928058 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:73929272 original size:19 final size:19
Alignment explanation
Indices: 73929245--73929283 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
73929235 TTTTAAAGAA
*
73929245 GTTAGTACAGCTAGTGCTC
1 GTTAATACAGCTAGTGCTC
*
73929264 GTTAATACAGTTAGTGCTC
1 GTTAATACAGCTAGTGCTC
73929283 G
1 G
73929284 GGTTGCCTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (19 bp):
GTTAATACAGCTAGTGCTC
Found at i:73934328 original size:43 final size:42
Alignment explanation
Indices: 73934217--73934377 Score: 153
Period size: 43 Copynumber: 3.8 Consensus size: 42
73934207 AATGCTAACG
* * * *
73934217 TCCCAAACGTGGTCTTACATGTAATCAAATACTGATGCCACTA
1 TCCCAAACATGGTCTTACACGAAATCAAATA-TGATGCCAATA
* * * * *
73934260 TCCCAGATAGGGTCTTACACGAAATCAAATATGATGTCAATG
1 TCCCAAACATGGTCTTACACGAAATCAAATATGATGCCAATA
* * *
73934302 TCCTAAACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAACA
1 TCCCAAACATGGTCTTACACG-AAA--TCAAATATGATGCCAATA
* *
73934346 TCCCAAACGTGGTCTTACACGAAATCACATAT
1 TCCCAAACATGGTCTTACACGAAATCAAATAT
73934378 CGGAATCCTA
Statistics
Matches: 93, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
41 5 0.05
42 25 0.27
43 31 0.33
44 26 0.28
45 6 0.06
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (42 bp):
TCCCAAACATGGTCTTACACGAAATCAAATATGATGCCAATA
Found at i:73945069 original size:29 final size:29
Alignment explanation
Indices: 73945008--73945106 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
73944998 ACAGTAAGTC
*
73945008 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
73945036 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
*
73945065 TGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
73945093 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73945107 CAATCTCATT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
28 33 0.50
29 32 0.48
30 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:73952789 original size:28 final size:29
Alignment explanation
Indices: 73952699--73952795 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
73952689 ACAGTAAGTC
73952699 CGCACACTTAGTGCT-TA-ATATTCAAAC-
1 CGCACACTTAGTGCTATACA-ATTCAAACT
73952726 C-CACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
73952754 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
73952782 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73952796 CAATCTCATT
Statistics
Matches: 66, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
26 13 0.20
27 11 0.17
28 21 0.32
29 21 0.32
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Done.