Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 249 of 378
Found at i:74380324 original size:10 final size:10
Alignment explanation
Indices: 74380297--74380335 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
74380287 TTAAATTCTA
74380297 AAAGATAAAT
1 AAAGATAAAT
74380307 ACAA-ATAAAT
1 A-AAGATAAAT
*
74380317 AAAGATAATT
1 AAAGATAAAT
74380327 AAAGATAAA
1 AAAGATAAA
74380336 AATAAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:74380392 original size:14 final size:13
Alignment explanation
Indices: 74380356--74380393 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
74380346 AAATTTAAAT
74380356 CTAAATAATTATC
1 CTAAATAATTATC
*
74380369 CTTAATAATTATC
1 CTAAATAATTATC
74380382 CTAATATAATTA
1 CTAA-ATAATTA
74380394 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:74383397 original size:47 final size:48
Alignment explanation
Indices: 74383303--74383419 Score: 148
Period size: 47 Copynumber: 2.5 Consensus size: 48
74383293 ATGAAAAAAT
* *
74383303 GTGGTGCTAAGTGGATATTCC-CCATGACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACCATGACACATATCGATACATGTAAC
* ** * * *
74383350 GTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCAT-TAAC
1 GTGGTGCTAAGTGGATATACCACCATGACACATATCGATACATGTAAC
74383397 GTGGTGCTAAGTGGATATACCAC
1 GTGGTGCTAAGTGGATATACCAC
74383420 AGTTAAACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 46 0.75
48 15 0.25
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (48 bp):
GTGGTGCTAAGTGGATATACCACCATGACACATATCGATACATGTAAC
Found at i:74391985 original size:19 final size:19
Alignment explanation
Indices: 74391963--74392036 Score: 52
Period size: 22 Copynumber: 4.1 Consensus size: 19
74391953 AATATAATGG
74391963 ATAATATATATAAATAAAA
1 ATAATATATATAAATAAAA
**
74391982 ATAATAACTAATATTTATAAAA
1 ATAAT-A-T-ATATAAATAAAA
74392004 ATAA-ATA-AT--ATAAAA
1 ATAATATATATAAATAAAA
*
74392019 A-AATATTTA-AAATAAAA
1 ATAATATATATAAATAAAA
74392036 A
1 A
74392037 AGGATTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
14 2 0.04
15 9 0.20
16 1 0.02
17 9 0.20
18 1 0.02
19 6 0.13
20 2 0.04
21 1 0.02
22 14 0.31
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATATATATAAATAAAA
Found at i:74391985 original size:26 final size:26
Alignment explanation
Indices: 74391964--74392013 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
74391954 ATATAATGGA
74391964 TAATATATATAAATAA-AAATAATAAC
1 TAATATATATAAA-AATAAATAATAAC
*
74391990 TAATATTTATAAAAATAAATAATA
1 TAATATATATAAAAATAAATAATA
74392014 TAAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (26 bp):
TAATATATATAAAAATAAATAATAAC
Found at i:74391988 original size:22 final size:23
Alignment explanation
Indices: 74391963--74392015 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
74391953 AATATAATGG
74391963 ATAATATATATAAATAAAAAT-A
1 ATAATATATATAAATAAAAATAA
**
74391985 ATAACTA-ATATTTATAAAAATAA
1 ATAA-TATATATAAATAAAAATAA
74392008 ATAATATA
1 ATAATATA
74392016 AAAAAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAATATATATAAATAAAAATAA
Found at i:74397297 original size:165 final size:165
Alignment explanation
Indices: 74397006--74397340 Score: 528
Period size: 165 Copynumber: 2.0 Consensus size: 165
74396996 TCAAGGTGAG
* * *
74397006 TTATATCATTGAGGCCATGAATTACATCACCCTTCTCTTTTTCCTCCATTTTATCATTTTTTGGA
1 TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
*
74397071 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTTAATAGATGCTTGATAAAGTTTCACTAAAT
66 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
* * * *
74397136 GTTTAGGCGTGTAACAGGTATATGCCCAATGCCCCC
131 GTTCAAGCATATAACAGGTATATGCCCAATG-CCCC
*
74397172 TTATATCATTAAGGCTATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCA-TTTTGGGA
1 TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
* *
74397236 TATTAAATTTGTCTAAATATTATTTTTCTTCTCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
66 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
* * *
74397301 GTTCAAGCATATGACAGGTATGTGCCCAATGGCCC
131 GTTCAAGCATATAACAGGTATATGCCCAATGCCCC
74397336 TTATA
1 TTATA
74397341 CCACATTGGT
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
164 8 0.05
165 94 0.61
166 53 0.34
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.41
Consensus pattern (165 bp):
TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
GTTCAAGCATATAACAGGTATATGCCCAATGCCCC
Found at i:74404205 original size:25 final size:25
Alignment explanation
Indices: 74404157--74404205 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
74404147 TGCGTAAAAG
* *
74404157 TACTCCGTTTAAGTGGTCTGAGGAA
1 TACTCCATTTAAGTGGTCTAAGGAA
74404182 TACTCCATTTAAGTTGG-CTAAGGA
1 TACTCCATTTAAG-TGGTCTAAGGA
74404206 GGATGAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (25 bp):
TACTCCATTTAAGTGGTCTAAGGAA
Found at i:74405448 original size:21 final size:21
Alignment explanation
Indices: 74405422--74405471 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
74405412 GAGGATATGC
74405422 TTAGGAGCTATATGATTGACT
1 TTAGGAGCTATATGATTGACT
74405443 TTAGGAGCTATATGATTGACT
1 TTAGGAGCTATATGATTGACT
74405464 TTAGGAGC
1 TTAGGAGC
74405472 AATTAGGAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (21 bp):
TTAGGAGCTATATGATTGACT
Found at i:74406130 original size:32 final size:32
Alignment explanation
Indices: 74406089--74406151 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
74406079 TAAACACGTG
74406089 TTATCTTGATTTTCAAAAATACGAGTTCAATA
1 TTATCTTGATTTTCAAAAATACGAGTTCAATA
74406121 TTATCTTGATTTTCAAAAATACGAGTTCAAT
1 TTATCTTGATTTTCAAAAATACGAGTTCAAT
74406152 GTAACATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.41
Consensus pattern (32 bp):
TTATCTTGATTTTCAAAAATACGAGTTCAATA
Found at i:74407437 original size:3 final size:3
Alignment explanation
Indices: 74407429--74407567 Score: 192
Period size: 3 Copynumber: 46.3 Consensus size: 3
74407419 ACTAATATTA
* * * *
74407429 AAT AAT AAT AAT ACT AGA- AAT AAT AAT AACT AGT AAT AAT GA- AAC
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
* *
74407474 ATT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
74407522 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
74407568 GTGAAATATA
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.02
3 117 0.97
4 2 0.02
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74408207 original size:27 final size:23
Alignment explanation
Indices: 74408151--74408198 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
74408141 TTATGTGTAT
**
74408151 AAAAAGAAAGAAATAAAAAACGA
1 AAAAAGAAAGAAATAAAAAAAAA
*
74408174 AAAAAGAAAGAAATAATAAAAAA
1 AAAAAGAAAGAAATAAAAAAAAA
74408197 AA
1 AA
74408199 TTCAAAAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.06
Consensus pattern (23 bp):
AAAAAGAAAGAAATAAAAAAAAA
Found at i:74413193 original size:68 final size:66
Alignment explanation
Indices: 74413082--74413272 Score: 231
Period size: 68 Copynumber: 2.8 Consensus size: 66
74413072 TGTGGAATTA
* * *
74413082 AGAGTATTCTCTAGTTAATATAGGATTAAAATTAACTTTTTAATGAAAATAGTGAAGAAGTAAGT
1 AGAGTATTCT-TAGTCAATAT-GGATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGT
74413147 TAT
64 TAT
* * * *
74413150 GTGAGTATTCTTAGCCAATATGGAATTAAAACTAACTTTTTAATGAAAGTAGCGAAGAAGTGAGT
1 -AGAGTATTCTTAGTCAATATGG-ATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGT
74413215 TAT
64 TAT
* * *
74413218 AAAGTATTGCTTAATCAATGTGGATTAAAACTAA-TCTTTTAATGAAAGTAGTGAA
1 AGAGTATT-CTTAGTCAATATGGATTAAAACTAACT-TTTTAATGAAAGTAGTGAA
74413273 AAAACTGTCA
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
66 1 0.01
67 37 0.35
68 59 0.56
69 9 0.08
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.35
Consensus pattern (66 bp):
AGAGTATTCTTAGTCAATATGGATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGTTA
T
Found at i:74413777 original size:3 final size:3
Alignment explanation
Indices: 74413769--74413851 Score: 157
Period size: 3 Copynumber: 27.7 Consensus size: 3
74413759 TGTCTAAATA
74413769 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
74413817 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74413852 GTATCTATTT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:74415380 original size:2 final size:2
Alignment explanation
Indices: 74415373--74415404 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
74415363 AGATATTGTA
74415373 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74415405 GTGTACGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74415859 original size:21 final size:18
Alignment explanation
Indices: 74415834--74415873 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
74415824 ATAATTAATG
74415834 TAAGTAATCATTATTAAAATA
1 TAAGTAAT-A-TA-TAAAATA
74415855 TAAGTAATATATAAAATA
1 TAAGTAATATATAAAATA
74415873 T
1 T
74415874 TCTATAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 2 0.11
20 1 0.05
21 8 0.42
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (18 bp):
TAAGTAATATATAAAATA
Found at i:74419856 original size:22 final size:23
Alignment explanation
Indices: 74419824--74419866 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
74419814 TTATTTGTCT
*
74419824 ATTTTTAAAAT-ATTTTTTTATG
1 ATTTTTAAAATAATTTATTTATG
*
74419846 ATTTTTGAAATAATTTATTTA
1 ATTTTTAAAATAATTTATTTA
74419867 ATCAAACTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (23 bp):
ATTTTTAAAATAATTTATTTATG
Found at i:74421191 original size:15 final size:15
Alignment explanation
Indices: 74421168--74421197 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74421158 AGTACTATTA
*
74421168 AATATTTTTTAAAAT
1 AATAATTTTTAAAAT
74421183 AATAATTTTTAAAAT
1 AATAATTTTTAAAAT
74421198 TCAACGTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATAATTTTTAAAAT
Found at i:74423084 original size:29 final size:28
Alignment explanation
Indices: 74423018--74423090 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
74423008 ACTACGGGCA
74423018 ACCAAAATAGAAATAAATTTAAATATTAAT
1 ACCAAAATA-AAA-AAATTTAAATATTAAT
*
74423048 ACAAAAAATAAAAAAATTTAAA-ATTAAAT
1 AC-CAAAATAAAAAAATTTAAATATT-AAT
*
74423077 GACCAAAACAAAAA
1 -ACCAAAATAAAAA
74423091 TACGTACGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 3 0.08
29 21 0.57
30 7 0.19
31 6 0.16
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.22
Consensus pattern (28 bp):
ACCAAAATAAAAAAATTTAAATATTAAT
Found at i:74429713 original size:20 final size:20
Alignment explanation
Indices: 74429688--74429730 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
74429678 CACGAGTGTG
*
74429688 TGCTTCTTTGCATGGGCGTA
1 TGCTTCTTTGCACGGGCGTA
74429708 TGCTTCTTTGCACGGGCGTA
1 TGCTTCTTTGCACGGGCGTA
74429728 TGC
1 TGC
74429731 CTCATTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.09, C:0.23, G:0.30, T:0.37
Consensus pattern (20 bp):
TGCTTCTTTGCACGGGCGTA
Found at i:74435168 original size:40 final size:40
Alignment explanation
Indices: 74435081--74435292 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
74435071 CCTTCGGAAT
* * *
74435081 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
74435120 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
74435160 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
74435200 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
74435240 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
74435280 TTAGCCCGGATAT
1 TTAACCCGGATAT
74435293 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:74435206 original size:80 final size:80
Alignment explanation
Indices: 74435081--74435292 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
74435071 CCTTCGGAAT
* * * ** * ***
74435081 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
74435145 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
74435160 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
74435225 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
74435240 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
74435293 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:74443182 original size:40 final size:40
Alignment explanation
Indices: 74443095--74443306 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
74443085 CCTTCGGAAT
* * *
74443095 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
74443134 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
74443174 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
74443214 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
74443254 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
74443294 TTAGCCCGGATAT
1 TTAACCCGGATAT
74443307 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:74443220 original size:80 final size:80
Alignment explanation
Indices: 74443095--74443306 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
74443085 CCTTCGGAAT
* * * ** * ***
74443095 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
74443159 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
74443174 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
74443239 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
74443254 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
74443307 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:74446184 original size:21 final size:22
Alignment explanation
Indices: 74446163--74446207 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
74446153 GTTATTGCAA
*
74446163 TATCGAGTGGCTTGTCCACAATGT
1 TATCGAGTGGCTTGACCACAA--T
*
74446187 TATTGAGTGGCTTGACCACAA
1 TATCGAGTGGCTTGACCACAA
74446208 CGATGCAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (22 bp):
TATCGAGTGGCTTGACCACAAT
Found at i:74447547 original size:21 final size:20
Alignment explanation
Indices: 74447510--74447549 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
74447500 CTCTAGAAAC
74447510 AGGGCACACACCCGTGTGAA
1 AGGGCACACACCCGTGTGAA
74447530 AGGGCA-ACACGCCTGTGTGA
1 AGGGCACACAC-CC-GTGTGA
74447550 TCATTATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.12
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGAA
Found at i:74448894 original size:46 final size:48
Alignment explanation
Indices: 74448711--74449022 Score: 224
Period size: 46 Copynumber: 6.6 Consensus size: 48
74448701 GTGTAATGCT
* * * *
74448711 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAT-TCGAGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAACTCT-ACATCTCGTGGCC
** * *
74448760 GACACCATGTCCCAGACATGGTCTTACACTGACAC-CT-CTAT-ACAT-GCC
1 GA-TGCATGTCCCAGACATGGTCTTACACT-A-ACTCTAC-ATCTCGTGGCC
* * *
74448808 GATGCCATGTCCCAAACATGGTCTTACACTGA--C-ACATCTCGTGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAACTCTACATCTCGTGGCC
** *
74448854 GATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAACTCTACATCTCGTGGCC
* * * *
74448900 AATGCATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAAT-GCC
1 GATGCATGTCCCAGACATGGTCTTACACTAACTCTACATCTC-GTGGCC
* * *
74448946 GATGCCATGTCTCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAACTCTACAT-CTCGTGGCC
*
74448994 GATGAATGTCCCAGACAT-GTCTTACACTA
1 GATGCATGTCCCAGACATGGTCTTACACTA
74449023 GCGCACAAAT
Statistics
Matches: 215, Mismatches: 31, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
44 13 0.06
45 17 0.08
46 70 0.33
47 27 0.13
48 53 0.25
49 31 0.14
50 2 0.01
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTAACTCTACATCTCGTGGCC
Found at i:74449003 original size:94 final size:92
Alignment explanation
Indices: 74448854--74449024 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
74448844 TCTCGTGGCT
* * *
74448854 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCAATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCAATGAATGTCCCAGACATG
74448919 TCTTACACTAGCTCTCGTCTCAATGCC
66 TCTTACACTAGCTCTCGTCTCAATGCC
* * *
74448946 GATGCCATGTCTCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGAATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATCGAGGCCAATGAATGTCCCAGA
74449009 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
74449025 GCACAAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 50 0.72
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCAATGAATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:74454783 original size:21 final size:20
Alignment explanation
Indices: 74454744--74454784 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
74454734 GTTTGTGAAG
74454744 TTTATTATTTTTTCTATTTT
1 TTTATTATTTTTTCTATTTT
74454764 TTTATTTATATTTTTC-ATTTT
1 TTTA-TTAT-TTTTTCTATTTT
74454785 AACTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTATTATTTTTTCTATTTT
Found at i:74456537 original size:30 final size:30
Alignment explanation
Indices: 74456497--74456555 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
74456487 TTTACGAGCC
*
74456497 TAGGCGCCAAAGTATAAATAAGTAAAAGTT
1 TAGGCGCCAAAATATAAATAAGTAAAAGTT
* * **
74456527 TAGGGGCCAAAATGTAAATTTGTAAAAGT
1 TAGGCGCCAAAATATAAATAAGTAAAAGT
74456556 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.22, T:0.25
Consensus pattern (30 bp):
TAGGCGCCAAAATATAAATAAGTAAAAGTT
Found at i:74464308 original size:32 final size:27
Alignment explanation
Indices: 74464229--74464312 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
74464219 GAAGCGTCCT
*
74464229 GTGGCTATGCCACGAT-TATCTGATCTG
1 GTGGCTCTGCCAC-ATATATCTGATCTG
* *
74464256 GTGGCTCTGTCACATATATCTGTTCTG
1 GTGGCTCTGCCACATATATCTGATCTG
74464283 GTGGCTCTGCCACA-ATATCTGTATCTG
1 GTGGCTCTGCCACATATATCTG-ATCTG
74464310 GTG
1 GTG
74464313 ACTTCGTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.18
27 41 0.82
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACATATATCTGATCTG
Found at i:74464323 original size:27 final size:27
Alignment explanation
Indices: 74464245--74464330 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
74464235 ATGCCACGAT
74464245 TATCTG-ATCTGGTGGCTCTGTCACATA
1 TATCTGTATCTGGTGGCTCTGTCACA-A
*
74464272 TATCTGT-TCTGGTGGCTCTGCCACAA
1 TATCTGTATCTGGTGGCTCTGTCACAA
*
74464298 TATCTGTATCTGGTGACT-TCGTCACAA
1 TATCTGTATCTGGTGGCTCT-GTCACAA
*
74464325 TTTCTG
1 TATCTG
74464331 GCAGCCTCGT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 9 0.17
27 43 0.83
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGTCACAA
Found at i:74468706 original size:40 final size:40
Alignment explanation
Indices: 74468626--74468844 Score: 354
Period size: 40 Copynumber: 5.5 Consensus size: 40
74468616 TTCGGATGAC
*
74468626 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
74468665 ATCCGGGCTAAGTCTCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
74468705 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
74468745 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
74468785 ATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
74468825 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
74468845 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 37 0.22
40 130 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:74473901 original size:4 final size:4
Alignment explanation
Indices: 74473892--74473939 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
74473882 CACTTCCCCT
* * * * *
74473892 CTCC CTCC CTCC CTCC CTCA CTCC TTCC CTCT CTCT CTCT CTCC CTCC
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC
74473940 TATAAAATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.02, C:0.65, G:0.00, T:0.33
Consensus pattern (4 bp):
CTCC
Found at i:74481059 original size:22 final size:22
Alignment explanation
Indices: 74481025--74481083 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
74481015 CACTTGACAT
74481025 AGGGGC-ACACGCCCGCTCAGG
1 AGGGGCAACACGCCCGCTCAGG
* * *
74481046 AGGGGCAACACGCCGGTTCGGG
1 AGGGGCAACACGCCCGCTCAGG
74481068 AGGGGCAACACGCCCG
1 AGGGGCAACACGCCCG
74481084 TGTGAGCATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
21 6 0.18
22 27 0.82
ACGTcount: A:0.20, C:0.34, G:0.41, T:0.05
Consensus pattern (22 bp):
AGGGGCAACACGCCCGCTCAGG
Found at i:74482290 original size:47 final size:46
Alignment explanation
Indices: 74482217--74482395 Score: 179
Period size: 47 Copynumber: 3.8 Consensus size: 46
74482207 AGGGAAAGGT
* * *
74482217 GTCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATACATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-CATCAA
* **
74482264 GTCGATGCCATGTCCCAGACATGGTCTTACTCT-GACT-ATCATCTC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCAA
**
74482309 GTAGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTC-TCAA
1 GT--C-GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCATCATCAA
74482357 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
74482396 TCACAAATGA
Statistics
Matches: 111, Mismatches: 11, Indels: 21
0.78 0.08 0.15
Matches are distributed among these distances:
45 6 0.05
46 18 0.16
47 63 0.57
48 20 0.18
49 4 0.04
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCAA
Found at i:74485458 original size:13 final size:13
Alignment explanation
Indices: 74485427--74485471 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
74485417 ACCGTTATGA
* *
74485427 AAAAATATTTTTT
1 AAAAGTATTTTTG
74485440 AAAAGTATTTTTG
1 AAAAGTATTTTTG
*
74485453 AGAAGTATTTTTG
1 AAAAGTATTTTTG
74485466 AAAAGT
1 AAAAGT
74485472 TTAGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.44
Consensus pattern (13 bp):
AAAAGTATTTTTG
Found at i:74487062 original size:16 final size:16
Alignment explanation
Indices: 74487043--74487073 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74487033 CTTCTTCACT
74487043 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
74487059 TACTTACTTACTTAA
1 TACTCACTTACTTAA
74487074 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:74487079 original size:20 final size:20
Alignment explanation
Indices: 74487040--74487079 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74487030 AAACTTCTTC
* *
74487040 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
74487060 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
74487080 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:74487455 original size:55 final size:53
Alignment explanation
Indices: 74487265--74487519 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
74487255 ACACGGGTAC
* * * * *
74487265 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
74487314 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
74487367 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
74487422 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
74487475 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
74487520 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:74487456 original size:108 final size:110
Alignment explanation
Indices: 74487312--74487512 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
74487302 ATCCTTTTGA
* *
74487312 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
74487375 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
74487420 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
74487485 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74487513 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:74494577 original size:16 final size:16
Alignment explanation
Indices: 74494558--74494588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74494548 CTTCTTCACT
74494558 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
74494574 TACTTACTTACTTAA
1 TACTCACTTACTTAA
74494589 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:74494594 original size:20 final size:20
Alignment explanation
Indices: 74494555--74494594 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74494545 AAACTTCTTC
* *
74494555 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
74494575 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
74494595 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:74494920 original size:55 final size:53
Alignment explanation
Indices: 74494736--74494991 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 53
74494726 ACACGGGTAC
* * * * *
74494736 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATG-AA
* * * *
74494785 CTTACCATTGCCATGTCTTGACATGGTCTTTCATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAA
* * *
74494838 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTACCTTAT-G-AA
* *** *
74494893 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATG-AA
* * *
74494946 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTTA
74494992 AACCCTAATG
Statistics
Matches: 170, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 47 0.28
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAA
Found at i:74494935 original size:108 final size:110
Alignment explanation
Indices: 74494783--74494983 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
74494773 ATCCTTTTGA
* * *
74494783 AACTTACCATTGCCATGTCTTGACATGGTCTTTCATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
74494846 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGT
* * *
74494891 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
74494956 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74494984 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGT
Found at i:74497621 original size:20 final size:20
Alignment explanation
Indices: 74497596--74497633 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
74497586 ATTGTAAGAT
74497596 TTGTCTTAGCCAAATTTATG
1 TTGTCTTAGCCAAATTTATG
74497616 TTGTCTTAGCCAAATTTA
1 TTGTCTTAGCCAAATTTA
74497634 ATGTGCTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (20 bp):
TTGTCTTAGCCAAATTTATG
Found at i:74532684 original size:25 final size:25
Alignment explanation
Indices: 74532653--74532705 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
74532643 CGAACTTCTA
74532653 TTTTCCTCACGAAGACACTCATTTT
1 TTTTCCTCACGAAGACACTCATTTT
74532678 TTTTCCTCACGAAGACACTCATTTT
1 TTTTCCTCACGAAGACACTCATTTT
74532703 TTT
1 TTT
74532706 ACTCTCACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.43
Consensus pattern (25 bp):
TTTTCCTCACGAAGACACTCATTTT
Found at i:74532712 original size:26 final size:25
Alignment explanation
Indices: 74532653--74532713 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
74532643 CGAACTTCTA
74532653 TTTT-CCTCACGAAGACACTCATTT
1 TTTTACCTCACGAAGACACTCATTT
*
74532677 TTTTTCCTCACGAAGACACTCATTT
1 TTTTACCTCACGAAGACACTCATTT
74532702 TTTTACTCTCAC
1 TTTTAC-CTCAC
74532714 TCTCGTTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 4 0.12
25 25 0.74
26 5 0.15
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.41
Consensus pattern (25 bp):
TTTTACCTCACGAAGACACTCATTT
Found at i:74544418 original size:40 final size:40
Alignment explanation
Indices: 74544317--74544525 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
74544307 TACTCGAATG
* * *
74544317 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAATCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-AACT
* **
74544358 ACATCCGAACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTAACT
* *
74544398 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * *
74544438 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * ** * *
74544478 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
74544518 ATATCCGG
1 ATATCCGG
74544526 TTAAACTCCG
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.78
41 29 0.20
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
Found at i:74552463 original size:40 final size:40
Alignment explanation
Indices: 74552362--74552570 Score: 242
Period size: 40 Copynumber: 5.2 Consensus size: 40
74552352 TACTCGAATG
* **
74552362 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTAACT
* *
74552403 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTAACT
* *
74552443 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * *
74552483 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* ** * *
74552523 ATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 AT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
74552563 ATATCCGG
1 ATATCCGG
74552571 TTAAACTCCG
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 111 0.77
41 30 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
Found at i:74554376 original size:11 final size:11
Alignment explanation
Indices: 74554360--74554424 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
74554350 ATATTGTTAT
74554360 ACATGATATGC
1 ACATGATATGC
74554371 ACATGATATG-
1 ACATGATATGC
** *
74554381 TTATGAGATGC
1 ACATGATATGC
74554392 ACATGATATGC
1 ACATGATATGC
* *
74554403 -TATGATATAC
1 ACATGATATGC
* *
74554413 TCATTATATGC
1 ACATGATATGC
74554424 A
1 A
74554425 TGGGTTGGGT
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
10 15 0.38
11 25 0.62
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (11 bp):
ACATGATATGC
Found at i:74554391 original size:21 final size:21
Alignment explanation
Indices: 74554362--74554407 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
74554352 ATTGTTATAC
* *
74554362 ATGATATGCACATGATATGTT
1 ATGAGATGCACATGATATGCT
74554383 ATGAGATGCACATGATATGCT
1 ATGAGATGCACATGATATGCT
74554404 ATGA
1 ATGA
74554408 TATACTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (21 bp):
ATGAGATGCACATGATATGCT
Found at i:74558273 original size:47 final size:47
Alignment explanation
Indices: 74558202--74558424 Score: 311
Period size: 47 Copynumber: 4.7 Consensus size: 47
74558192 CCCTTCGGGA
* * * * * *
74558202 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74558249 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74558296 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74558343 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74558392 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
74558425 GCGTAAAATC
Statistics
Matches: 160, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 96 0.60
49 64 0.40
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74558403 original size:96 final size:95
Alignment explanation
Indices: 74558202--74558424 Score: 315
Period size: 96 Copynumber: 2.3 Consensus size: 95
74558192 CCCTTCGGGA
* * * *
74558202 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACA
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACA
*
74558266 CTTTCACATTCATCACATCGGCCATTCGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
74558296 CTTATCACATA-TGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATA
74558360 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
74558392 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA-TTATACACTTTCACATTCATC
74558425 GCGTAAAATC
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
94 47 0.42
96 48 0.42
98 18 0.16
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74567099 original size:49 final size:49
Alignment explanation
Indices: 74567022--74567265 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
74567012 TAGCCGAAGC
* *
74567022 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
74567071 TATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
74567121 CATCTGATACAC-TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
74567171 TATCAGGTACACATAGTAGCCTGCACTTAGCACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
74567220 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
74567266 TCACAATAGC
Statistics
Matches: 168, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 115 0.68
50 25 0.15
51 28 0.17
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:74567206 original size:100 final size:98
Alignment explanation
Indices: 74567035--74567265 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
74567025 CTGGTACGCA
* * * *
74567035 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGAACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGAACTTA
* *
74567100 GTACTACACACGTGACCTAACCATCTGATACAC-
66 GCACTACACACGCGACC-AACCATCTGATACACG
* *
74567133 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGAACT
* ** *
74567198 TAGCACTACACATGCGACCAATTATCTGGTACACG
64 TAGCACTACACACGCGACCAACCATCTGATACACG
74567233 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
74567266 TCACAATAGC
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
98 29 0.25
99 16 0.14
100 72 0.62
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGAACTTA
GCACTACACACGCGACCAACCATCTGATACACG
Found at i:74567947 original size:30 final size:30
Alignment explanation
Indices: 74567913--74567972 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74567903 CTTTAAGATG
74567913 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
74567943 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
74567973 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:74569790 original size:202 final size:202
Alignment explanation
Indices: 74569439--74569838 Score: 773
Period size: 202 Copynumber: 2.0 Consensus size: 202
74569429 AAATTCACAA
74569439 AACAGGTGTGTAAAAACCCTCGTAGTAGCTTAGATTAATATTCACTGAAAAGCCGAAATGCTAAA
1 AACAGGTGTGTAAAAACCCTCGTAGTAGCTTAGATTAATATTCACTGAAAAGCCGAAATGCTAAA
74569504 ATTCCAGCATTTCGGGAACTTGTGATTTTGCATTTGGTTATAGATGCGACAAATACGATAAGATC
66 ATTCCAGCATTTCGGGAACTTGTGATTTTGCATTTGGTTATAGATGCGACAAATACGATAAGATC
*
74569569 GGTGTTTGGATCGATGGAACAGGTAAGAGCGCAATTTTGTACACGATGATAAGTTGGGCCTCAAT
131 GGTGTTTGGATCAATGGAACAGGTAAGAGCGCAATTTTGTACACGATGATAAGTTGGGCCTCAAT
74569634 GGGCTGG
196 GGGCTGG
* *
74569641 AACAGGTGTGTAAAAACCCTCGTAGTAGCTTAGATTAATATTCGCTGAAAAGTCGAAATGCTAAA
1 AACAGGTGTGTAAAAACCCTCGTAGTAGCTTAGATTAATATTCACTGAAAAGCCGAAATGCTAAA
74569706 ATTCCAGCATTTCGGGAACTTGTGATTTTGCATTTGGTTATAGATGCGACAAATACGATAAGATC
66 ATTCCAGCATTTCGGGAACTTGTGATTTTGCATTTGGTTATAGATGCGACAAATACGATAAGATC
74569771 GGTGTTTGGATCAATGGAACAGGTAAGAGCGCAATTTTGTACACGATGATAAGTTGGGCCTCAAT
131 GGTGTTTGGATCAATGGAACAGGTAAGAGCGCAATTTTGTACACGATGATAAGTTGGGCCTCAAT
74569836 GGG
196 GGG
74569839 TTAGAATCGG
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 195 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (202 bp):
AACAGGTGTGTAAAAACCCTCGTAGTAGCTTAGATTAATATTCACTGAAAAGCCGAAATGCTAAA
ATTCCAGCATTTCGGGAACTTGTGATTTTGCATTTGGTTATAGATGCGACAAATACGATAAGATC
GGTGTTTGGATCAATGGAACAGGTAAGAGCGCAATTTTGTACACGATGATAAGTTGGGCCTCAAT
GGGCTGG
Found at i:74570233 original size:11 final size:11
Alignment explanation
Indices: 74570217--74570281 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
74570207 ATATTGTTAT
74570217 ACATGATATGC
1 ACATGATATGC
74570228 ACATGATATG-
1 ACATGATATGC
** *
74570238 TTATGAGATGC
1 ACATGATATGC
74570249 ACATGATATGC
1 ACATGATATGC
* *
74570260 -TATGATATAC
1 ACATGATATGC
* *
74570270 TCATTATATGC
1 ACATGATATGC
74570281 A
1 A
74570282 TGGGTTGGGT
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
10 15 0.38
11 25 0.62
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (11 bp):
ACATGATATGC
Found at i:74570248 original size:21 final size:21
Alignment explanation
Indices: 74570219--74570264 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
74570209 ATTGTTATAC
* *
74570219 ATGATATGCACATGATATGTT
1 ATGAGATGCACATGATATGCT
74570240 ATGAGATGCACATGATATGCT
1 ATGAGATGCACATGATATGCT
74570261 ATGA
1 ATGA
74570265 TATACTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (21 bp):
ATGAGATGCACATGATATGCT
Found at i:74570372 original size:24 final size:25
Alignment explanation
Indices: 74570315--74570372 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
74570305 AGGAAGTGCG
74570315 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTACC
**
74570339 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTACC
74570363 AAAAGAGGCT
1 AAAAGAGGCT
74570373 AGGTCTCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTACC
Found at i:74577603 original size:46 final size:45
Alignment explanation
Indices: 74577553--74577727 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
74577543 TGGTTGAGCA
74577553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
74577599 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
74577645 TCCGAACTCGTTGCGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
74577691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74577728 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74577707 original size:92 final size:92
Alignment explanation
Indices: 74577550--74577720 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
74577540 GGATGGTTGA
* *
74577550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74577615 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
74577642 GCATCCGAACTCGTTGCGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74577707 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
74577721 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:74585145 original size:46 final size:45
Alignment explanation
Indices: 74585095--74585268 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
74585085 TGGTTGAGCA
74585095 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
74585141 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
74585187 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
74585233 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74585269 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 64 0.58
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74588258 original size:2 final size:2
Alignment explanation
Indices: 74588251--74588282 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
74588241 GCCCTTGCAC
74588251 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74588283 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74589184 original size:80 final size:79
Alignment explanation
Indices: 74589045--74589200 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 79
74589035 GGACTAAGAT
* **
74589045 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
74589109 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
*
74589125 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTACGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
74589189 ATATCCGGTTAA
65 AAATCCGGTTAA
74589201 ACTCCGAAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
79 8 0.12
80 59 0.86
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:74589191 original size:40 final size:40
Alignment explanation
Indices: 74588996--74589177 Score: 246
Period size: 40 Copynumber: 4.5 Consensus size: 40
74588986 AATGATGTCC
* *
74588996 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
*
74589036 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
*
74589076 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
*
74589116 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
74589156 GGCTACGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
74589178 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
39 3 0.02
40 117 0.90
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:74597130 original size:79 final size:82
Alignment explanation
Indices: 74596987--74597170 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 82
74596977 TCGAATGATG
74596987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
74597051 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * **
74597067 TCCGGGTTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-AATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAA-CCGGACTAAGAT-CCGAAGGCA
74597128 TTTGTGCGAGTTACTATAA
64 TTTGTGCGAGTTACTATAA
*
74597147 -CCGGGCTACGTCCCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74597171 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
78 3 0.03
79 64 0.70
80 25 0.27
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:74597134 original size:40 final size:41
Alignment explanation
Indices: 74596987--74597170 Score: 240
Period size: 40 Copynumber: 4.6 Consensus size: 41
74596977 TCGAATGATG
* *
74596987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
74597028 -CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74597067 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74597106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74597147 -CCGGGCTACGTCCCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74597171 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 49 0.37
40 72 0.55
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74597177 original size:79 final size:78
Alignment explanation
Indices: 74597040--74597193 Score: 206
Period size: 79 Copynumber: 2.0 Consensus size: 78
74597030 GGACTAAGAT
* **
74597040 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAG-TAGCTA
74597104 AATCCGGGTTAAGTC
65 AATCC-GGTTAAGTC
*
74597119 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTACGTCCCGAA-GCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATTTGAACGAGTAGCT
*
74597182 ATATCCGGTTAA
64 AAATCCGGTTAA
74597194 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
78 8 0.12
79 52 0.78
80 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:74599980 original size:45 final size:46
Alignment explanation
Indices: 74599864--74599991 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
74599854 TATTTGGGCA
74599864 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
74599910 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
74599956 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74599992 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 34 0.44
46 44 0.56
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:74602926 original size:15 final size:15
Alignment explanation
Indices: 74602906--74602974 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
74602896 GTATCTTGGG
74602906 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
74602921 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
74602936 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
74602951 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
74602966 TTTCTTTAT
1 TTTCTTTAT
74602975 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:74602975 original size:30 final size:30
Alignment explanation
Indices: 74602897--74602984 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
74602887 CATAGTATCG
* * * *
74602897 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
74602927 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
74602957 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
74602985 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:74605498 original size:46 final size:45
Alignment explanation
Indices: 74605352--74605524 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
74605342 ATTTGGGCAT
* *
74605352 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
74605397 CCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
*
74605441 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
74605489 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74605525 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 6 0.06
43 2 0.02
44 8 0.07
45 20 0.19
46 54 0.50
47 7 0.06
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:74608141 original size:16 final size:16
Alignment explanation
Indices: 74608102--74608144 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
74608092 AATTTTAACC
74608102 TGTATATGATTGAAAAT
1 TGTATATGATT-AAAAT
74608119 TGATATATGTATT-AAAT
1 TG-TATATG-ATTAAAAT
74608136 TGTATATGA
1 TGTATATGA
74608145 AATTGAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.04
16 6 0.25
17 8 0.33
18 6 0.25
19 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
TGTATATGATTAAAAT
Found at i:74614760 original size:26 final size:26
Alignment explanation
Indices: 74614731--74614783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
74614721 TTCCATTTCG
*
74614731 AGCGGATACTATTATAGTTTCGACAT
1 AGCGGATACTATTATAGTTTCAACAT
74614757 AGCGGATACTATTATAGTTTCAACAT
1 AGCGGATACTATTATAGTTTCAACAT
74614783 A
1 A
74614784 CACTACATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (26 bp):
AGCGGATACTATTATAGTTTCAACAT
Found at i:74616606 original size:49 final size:50
Alignment explanation
Indices: 74616538--74616668 Score: 187
Period size: 50 Copynumber: 2.6 Consensus size: 50
74616528 CATCAAGTCG
74616538 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATT-GAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCG-GGCCA
* * *
74616587 ATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATTCGGGCCA
*
74616637 ATGCCATGTCCCAGACAGGGTCTTACACTGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC
74616669 ACATCGCGTA
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
48 1 0.01
49 34 0.46
50 37 0.50
51 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGGGCCA
Found at i:74616741 original size:46 final size:48
Alignment explanation
Indices: 74616487--74616849 Score: 254
Period size: 46 Copynumber: 7.7 Consensus size: 48
74616477 AGGGTATAAT
* * * *
74616487 GCCGATGCCATATTCCAGACATGGTCTTACACTGGC-T-CATTCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACA-TCATGAG
* * **
74616534 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCA-TGAG
* * **
74616583 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATTCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCATGAG
* * * **
74616632 TGCCAATGCCATGTCCCAGACAGGGTCTTACACTGAC--ACATCGCGTA-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCATG-AG
* * *
74616679 ACCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCATGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCATGAG
* * * *
74616725 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCAT-GAG
* * * * *
74616771 ACTGATACCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCATGAG
*
74616819 GCCGATG-CATGTCCCAGACAT-GTTTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
74616850 AGCACACCAA
Statistics
Matches: 253, Mismatches: 46, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
44 12 0.05
45 15 0.06
46 65 0.26
47 62 0.25
48 22 0.09
49 39 0.15
50 34 0.13
51 3 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCATGAG
Found at i:74616831 original size:140 final size:140
Alignment explanation
Indices: 74616501--74616849 Score: 349
Period size: 140 Copynumber: 2.4 Consensus size: 140
74616491 ATGCCATATT
74616501 CCAGACATGGTCTTACACTGGCTCATTCATCAAGT-CGATGCCATGTCCCAGACATGGTCTTACA
1 CCAGACATGGTCTTACACTGGCTC--TCAT-AAGTCCGATG-CATGTCCCAGACAT-GTCTTACA
*
74616565 CTGACTATCAAAATTGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATT
61 CTGACTATCAAAATTGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATA
*
74616630 CGTGCCAATGCCATGTC
126 CGTG-C-ATACCATGTC
* * * * *
74616647 CCAGACAGGGTCTTACACTGACACATCGCGTAA--CCAATGCATGTCCCAGACATGTCTTACACT
1 CCAGACATGGTCTTACACTG--GC-TCTCATAAGTCCGATGCATGTCCCAGACATGTCTTACACT
* *** * *
74616710 GGCT-TACGTCA-TGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAA
63 GACTAT-CAAAATTGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACAT--A
74616770 TAC-TG-ATACCATGTC
124 TACGTGCATACCATGTC
*
74616785 CCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTTTTACACT
1 CCAGACATGGTCTTACACTGGCTCTCATAA-GT--CCGATGCATGTCCCAGACATGTCTTACACT
74616850 AGCACACCAA
Statistics
Matches: 171, Mismatches: 19, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
135 6 0.04
136 1 0.01
138 28 0.16
140 46 0.27
141 17 0.10
142 14 0.08
143 15 0.09
144 14 0.08
145 4 0.02
146 21 0.12
147 2 0.01
148 1 0.01
149 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (140 bp):
CCAGACATGGTCTTACACTGGCTCTCATAAGTCCGATGCATGTCCCAGACATGTCTTACACTGAC
TATCAAAATTGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATACGTGC
ATACCATGTC
Found at i:74622722 original size:46 final size:46
Alignment explanation
Indices: 74622635--74622753 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 46
74622625 TGTGTGCTAG
* *
74622635 TGTAAGACATGTCTGGGACATGCATCGACCATATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGACCATATGACGAGAGCCAA
* * *
74622681 TGTAAGACATGTCTGGGACATGCATC-AGCAT-TGAGACGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGACCATAT--GACGAGAGCCAA
* *
74622727 TATAAGACATGTTTGGGACATGCATCG
1 TGTAAGACATGTCTGGGACATGCATCG
74622754 GCCTCGAGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 1 0.02
45 4 0.06
46 58 0.92
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGACCATATGACGAGAGCCAA
Found at i:74623151 original size:189 final size:189
Alignment explanation
Indices: 74622920--74623292 Score: 728
Period size: 189 Copynumber: 2.0 Consensus size: 189
74622910 AAGTCAATGA
74622920 AAGACCTATCTGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACA
1 AAGACCTATCTGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACA
74622985 TGGCATCGGAATCGTACCTTATGTTTGAGGCTTAGTGATTATCTTGTGGTATTCCAAATGGTTCA
66 TGGCATCGGAATCGTACCTTATGTTTGAGGCTTAGTGATTATCTTGTGGTATTCCAAATGGTTCA
74623050 ACGGGAAATTTAAGGTTTAATTCGAAATGATAGAGCTTATAGCTATGTTGTGAGAGTGT
131 ACGGGAAATTTAAGGTTTAATTCGAAATGATAGAGCTTATAGCTATGTTGTGAGAGTGT
* *
74623109 AAGACCTGTCTGGGACATGGCATCGACTTAGATGTTTAAGCCAGTGTAAGACCATGTTTGGAACA
1 AAGACCTATCTGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACA
74623174 TGGCATCGGAATCGTACCTTATGTTTGAGGCTTAGTGATTATCTTGTGGTATTCCAAATGGTTCA
66 TGGCATCGGAATCGTACCTTATGTTTGAGGCTTAGTGATTATCTTGTGGTATTCCAAATGGTTCA
74623239 ACGGGAAATTTAAGGTTTAATTCGAAATGATAGAGCTTATAGCTATGTTGTGAG
131 ACGGGAAATTTAAGGTTTAATTCGAAATGATAGAGCTTATAGCTATGTTGTGAG
74623293 TGGTATAGGT
Statistics
Matches: 182, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 182 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (189 bp):
AAGACCTATCTGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACA
TGGCATCGGAATCGTACCTTATGTTTGAGGCTTAGTGATTATCTTGTGGTATTCCAAATGGTTCA
ACGGGAAATTTAAGGTTTAATTCGAAATGATAGAGCTTATAGCTATGTTGTGAGAGTGT
Found at i:74626356 original size:93 final size:93
Alignment explanation
Indices: 74626249--74626420 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
74626239 CGCCCATAAG
* *
74626249 CGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
74626313 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* *
74626342 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
74626407 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
74626421 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:74626412 original size:46 final size:46
Alignment explanation
Indices: 74626243--74626417 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
74626233 GTAACCCGCC
* * * *
74626243 CATAAGCGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATT
* * *
74626289 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-TT
*
74626334 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATT
1 -CA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATT
*
74626382 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74626418 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 61 0.57
47 29 0.27
48 4 0.04
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATT
Found at i:74626436 original size:46 final size:43
Alignment explanation
Indices: 74626293--74626436 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 43
74626283 CGCATCCATA
*
74626293 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACATCT
* * * *
74626340 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CA-ACATCT
74626386 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAA-CAT-CT
74626432 AGTGA
1 AGTGA
74626437 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 8 0.10
45 1 0.01
46 33 0.42
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACATCT
Found at i:74634430 original size:19 final size:19
Alignment explanation
Indices: 74634394--74634432 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74634384 TTTTTAAATT
* *
74634394 ATCTAAAATTTCAGATAAA
1 ATCTAAAATTTAAAATAAA
*
74634413 ATCTAAATTTTAAAATAAA
1 ATCTAAAATTTAAAATAAA
74634432 A
1 A
74634433 GGACTCTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (19 bp):
ATCTAAAATTTAAAATAAA
Found at i:74639987 original size:21 final size:21
Alignment explanation
Indices: 74639962--74640001 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
74639952 TTTAATATAA
74639962 TAATACCTT-ATTATATTATTT
1 TAATACCTTAATTA-ATTATTT
*
74639983 TAATACTTTAATTAATTAT
1 TAATACCTTAATTAATTAT
74640002 GACCCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATACCTTAATTAATTATTT
Found at i:74642297 original size:68 final size:69
Alignment explanation
Indices: 74642187--74642345 Score: 230
Period size: 68 Copynumber: 2.3 Consensus size: 69
74642177 TCAACTTTAC
*
74642187 CCTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTCA-TTCTTCCCATTTCCT
1 CCTTCT-CCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT
74642251 TCCAA
65 TCCAA
* * *
74642256 CCTTCTCCTCTTTTTCATTGTCACGTCTGAATCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC
1 CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCA-T-TTCTTCCCATTTCC
74642321 TTCCAA
64 TTCCAA
*
74642327 CCATCTCTCTCTTTTTCAT
1 CCTTCTC-CTCTTTTTCAT
74642346 GCTTCTATCC
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
68 38 0.47
69 6 0.07
71 26 0.32
72 11 0.14
ACGTcount: A:0.13, C:0.34, G:0.04, T:0.49
Consensus pattern (69 bp):
CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCTT
CCAA
Found at i:74642817 original size:2 final size:2
Alignment explanation
Indices: 74642810--74642836 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74642800 TTTAGTCTGC
74642810 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
74642837 GCTGTGGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74646508 original size:43 final size:43
Alignment explanation
Indices: 74646445--74646529 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
74646435 TTAGGAATTA
74646445 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
* *
74646488 GTTGGGTATCAAGTTGGAAAAGGCATCAAATTGGTTGCCTTA
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTA
74646530 TGCATTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (43 bp):
GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
Found at i:74646967 original size:17 final size:17
Alignment explanation
Indices: 74646947--74646979 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74646937 ATTAAGAATG
74646947 TTATTAAATTAAATTTT
1 TTATTAAATTAAATTTT
*
74646964 TTATTAAATTATATTT
1 TTATTAAATTAAATTT
74646980 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATTAAATTTT
Found at i:74647242 original size:16 final size:16
Alignment explanation
Indices: 74647221--74647291 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
74647211 TGAATTACTG
*
74647221 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
*
74647237 ATTACAGCTATATTCA
1 ATTACAGCTCTATTCA
*
74647253 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCA
* *
74647269 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
74647285 ATTACAG
1 ATTACAG
74647292 TGAACCAAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:74657335 original size:23 final size:22
Alignment explanation
Indices: 74657305--74657347 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
74657295 AATTCATATA
74657305 TTTTTATTTTTAAAATTTTATT
1 TTTTTATTTTTAAAATTTTATT
*
74657327 TTTTATATTTTTTAAATTTTA
1 TTTT-TATTTTTAAAATTTTA
74657348 AAATTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTTATTTTTAAAATTTTATT
Found at i:74657354 original size:23 final size:23
Alignment explanation
Indices: 74657304--74657354 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
74657294 TAATTCATAT
* **
74657304 ATTTTTATTTTTAAAATTTTATT
1 ATTTATATTTTTAAAATTTTAAA
* *
74657327 TTTTATATTTTTTAAATTTTAAA
1 ATTTATATTTTTAAAATTTTAAA
74657350 ATTTA
1 ATTTA
74657355 AATCTAATTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTTATATTTTTAAAATTTTAAA
Found at i:74658406 original size:34 final size:35
Alignment explanation
Indices: 74658367--74658432 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
74658357 TTTATATATT
*
74658367 AATATAT-TAATAAAATTTTATTTTAACTCTAGTA
1 AATATATATAATAAAATTTTATTTTAAATCTAGTA
* * *
74658401 AATATATATAATTAATTTTTTTTTTAAATCTA
1 AATATATATAATAAAATTTTATTTTAAATCTA
74658433 CCTTCACTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 7 0.26
35 20 0.74
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (35 bp):
AATATATATAATAAAATTTTATTTTAAATCTAGTA
Found at i:74659490 original size:22 final size:22
Alignment explanation
Indices: 74659458--74659500 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
74659448 ATAAATATAA
74659458 TTTTTTTTAAAA-ATTAAAATG
1 TTTTTTTTAAAATATTAAAATG
*
74659479 TTTTTTTATAAAATTTTAAAAT
1 TTTTTTT-TAAAATATTAAAAT
74659501 ATATAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTTTTTAAAATATTAAAATG
Found at i:74659554 original size:31 final size:31
Alignment explanation
Indices: 74659482--74659565 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
74659472 TAAAATGTTT
* *
74659482 TTTTATAAAATTTTAAAATATATAATTATAAA
1 TTTTATAAAA-GTTAAAATATATAATTAAAAA
74659514 TTTTA-AAAAGTTAAAATA-AT-ATATAAAAA
1 TTTTATAAAAGTTAAAATATATAAT-TAAAAA
*
74659543 TTATTATAAAAGTTAACATATAT
1 TT-TTATAAAAGTTAAAATATAT
74659566 TTCAATTCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
28 2 0.04
29 9 0.20
30 11 0.24
31 16 0.36
32 7 0.16
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (31 bp):
TTTTATAAAAGTTAAAATATATAATTAAAAA
Found at i:74659891 original size:27 final size:27
Alignment explanation
Indices: 74659844--74659908 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 27
74659834 AAGATAGAAA
* *
74659844 AAAATTAATATTTTAAGTACCAAATTGAG
1 AAAA-TAA-ATTTTAAATACCAAAATGAG
74659873 ATAAA-AAATTTTAAATACCAAAATGAG
1 A-AAATAAATTTTAAATACCAAAATGAG
74659900 AAAATAAAT
1 AAAATAAAT
74659909 ATATTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 3 0.09
27 23 0.72
28 2 0.06
29 1 0.03
30 3 0.09
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAATTTTAAATACCAAAATGAG
Found at i:74669378 original size:136 final size:137
Alignment explanation
Indices: 74669133--74669411 Score: 438
Period size: 136 Copynumber: 2.0 Consensus size: 137
74669123 TGCCCATACA
* * *
74669133 TTCATGCAGATAACCTTCTTTGTGTTAGCCAAACATGGGTCCGTGTTCCGAGATCAATCAGTCCT
1 TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACATGGGTACGTGTTCAGAGATCAATCAGTCCT
* * *
74669198 TTCATTTCCTTTGCCATGCTAGCCAGTCTGGTTTGTAATGTACCTGCCTTACCAGAGG-CTACAT
66 TTCATTTCCTTTACCATGCTAACCAGTCTGGTTTGCAATGTACCTGCCTTACCAGAGGTC-ACAT
74669262 AACCATTG
130 AACCATTG
* *
74669270 -TCATGCAGACAACCTTCTTTGTGTTAGCCAAAC-TCGGGTACGTGTTCAGAGATTAATCATTCC
1 TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACAT-GGGTACGTGTTCAGAGATCAATCAGTCC
*
74669333 TTTCATTTCCTTTACCATGCTAACTAGTCTGGTTTGCAATGTACCTGCCTTACCAGAGGTCACAT
65 TTTCATTTCCTTTACCATGCTAACCAGTCTGGTTTGCAATGTACCTGCCTTACCAGAGGTCACAT
74669398 AACCATTG
130 AACCATTG
74669406 TTCATG
1 TTCATG
74669412 TACTGCGATC
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
135 1 0.01
136 123 0.95
137 6 0.05
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (137 bp):
TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACATGGGTACGTGTTCAGAGATCAATCAGTCCT
TTCATTTCCTTTACCATGCTAACCAGTCTGGTTTGCAATGTACCTGCCTTACCAGAGGTCACATA
ACCATTG
Found at i:74676416 original size:18 final size:18
Alignment explanation
Indices: 74676379--74676417 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74676369 TTAGAAATCA
*
74676379 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
74676397 AAATTATTAAAAAGA-AAT
1 AAATTATT-AAAAGATAAT
74676415 AAA
1 AAA
74676418 AATAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:74677597 original size:57 final size:58
Alignment explanation
Indices: 74677457--74677600 Score: 150
Period size: 57 Copynumber: 2.5 Consensus size: 58
74677447 ACCTCATTAC
* * * * *
74677457 AAAAAGGATTTAGCCT-GAATGGGTAATCCTGATATAAGTCCTCTCGAGCACATGTTAT
1 AAAAAGGATTTAGCCTGGACT-GGTAATCCAGATACAAGTCCTCTAGAGCACATGTCAT
* ** * * *
74677515 AGATTGGATTTAGCCCGGACGGGTAATCCAGAT-CAAGCTCCT-TAGAGCATATGTCAT
1 AAAAAGGATTTAGCCTGGACTGGTAATCCAGATACAAG-TCCTCTAGAGCACATGTCAT
74677572 AAAAAGGATTTAGCCTGGACTGGTAATCC
1 AAAAAGGATTTAGCCTGGACTGGTAATCC
74677601 TGTTGTATAC
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
57 39 0.57
58 27 0.40
59 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (58 bp):
AAAAAGGATTTAGCCTGGACTGGTAATCCAGATACAAGTCCTCTAGAGCACATGTCAT
Found at i:74680560 original size:21 final size:22
Alignment explanation
Indices: 74680508--74680560 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
74680498 AAATAGAGTC
*
74680508 CATGTA-CAAATATCATGATCT
1 CATGTATCATATATCATGATCT
* *
74680529 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATGATCT
74680551 CATGTATCAT
1 CATGTATCAT
74680561 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATGATCT
Found at i:74684609 original size:43 final size:41
Alignment explanation
Indices: 74684477--74684627 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 41
74684467 CCGAGACTAT
*
74684477 GTGTAAGATCATATCTAGGATATGGCATC-ATTATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCGA-TATGAGA-TTC
* *
74684519 GTGTAAGACCATATCTAGGATACGAG-ATTGATATGAGATTTC
1 GTGTAAGACCATATCTAGGATATG-GCATCGATATGAGA-TTC
* *
74684561 GTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATTCC
1 GTGTAAGACCATATCTAGGATA-TGGCATCGATATGAGATT-C
* *
74684604 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTAGGATATG
74684628 ACATTGGTGT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 59 0.64
43 33 0.36
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTC
Found at i:74693749 original size:46 final size:45
Alignment explanation
Indices: 74693699--74693874 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
74693689 TGGTTGAGCA
*
74693699 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
74693745 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
74693792 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
74693838 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74693875 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74693855 original size:93 final size:93
Alignment explanation
Indices: 74693696--74693866 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74693686 GGATGGTTGA
* * *
74693696 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74693761 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
74693789 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74693854 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74693867 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:74696631 original size:19 final size:19
Alignment explanation
Indices: 74696593--74696633 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
74696583 TGTTGCCGCT
**
74696593 GCACACTGTCGTTGCTGTC
1 GCACACTGTCGTTGAGGTC
*
74696612 GCACGCTGTCGTTGAGGTC
1 GCACACTGTCGTTGAGGTC
74696631 GCA
1 GCA
74696634 AGATTTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (19 bp):
GCACACTGTCGTTGAGGTC
Found at i:74701351 original size:70 final size:71
Alignment explanation
Indices: 74701201--74701363 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
74701191 GAGATGTATC
74701201 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74701266 AGGACA
66 AGGACA
74701272 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74701336 AGGACA
66 AGGACA
74701342 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74701364 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74708812 original size:67 final size:70
Alignment explanation
Indices: 74708733--74708892 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 70
74708723 GAGATGTATC
74708733 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAG-G-
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74708796 A-ACA
66 AGACA
74708800 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74708865 AGGACA
66 A-GACA
74708871 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74708893 AGACAAATCG
Statistics
Matches: 89, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
67 62 0.70
68 1 0.01
69 1 0.01
71 25 0.28
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGACA
Found at i:74718958 original size:40 final size:41
Alignment explanation
Indices: 74718904--74719023 Score: 158
Period size: 40 Copynumber: 3.0 Consensus size: 41
74718894 CAACCGGTTA
74718904 TAACCACGT-GCACGAATGCCTTCGGGTCTTAGCCCGGATAG
1 TAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
74718945 -AACGACTCGCACGAATGCCTTCGGGTCTTAGCCCGGAT-G
1 TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
74718984 TAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
74719024 TAATTTCCAG
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
39 4 0.06
40 66 0.94
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (41 bp):
TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
Found at i:74739366 original size:40 final size:39
Alignment explanation
Indices: 74739201--74739384 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
74739191 AAATTGATTG
* * *
74739201 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74739241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
74739281 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74739321 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
74739360 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
74739385 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74739409 original size:80 final size:81
Alignment explanation
Indices: 74739241--74739429 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
74739231 GCTGGAAATT
* * * *
74739241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
74739306 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
74739322 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
74739385 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
74739401 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
74739430 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:74741810 original size:39 final size:39
Alignment explanation
Indices: 74741767--74741916 Score: 237
Period size: 39 Copynumber: 3.8 Consensus size: 39
74741757 GAGAACAAAA
* *
74741767 ATATCCGGGCCAAGCCCGAAGGCAATTGTGCGAATTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* *
74741806 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
74741845 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* *
74741884 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
74741917 GGTTACCATA
Statistics
Matches: 102, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 85 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
Found at i:74741932 original size:40 final size:39
Alignment explanation
Indices: 74741767--74741945 Score: 232
Period size: 39 Copynumber: 4.6 Consensus size: 39
74741757 GAGAACAAAA
* * *
74741767 ATATCCGGGCCAAGCCCGAAGGCAATTGTGCGAATTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
*
74741806 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
*
74741845 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
* * * **
74741884 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACC
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATG
* **
74741924 ATAACCGGGCTATTCCCGAAGG
1 ATATCCGGGCTAAGCCCGAAGG
74741946 TGTTTTGAAC
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
39 93 0.76
40 30 0.24
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
Found at i:74746122 original size:40 final size:40
Alignment explanation
Indices: 74746062--74746225 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
74746052 CGGGATTTAA
* ** *
74746062 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
74746102 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
74746142 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
74746182 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
74746222 CCGG
1 CCGG
74746226 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:74746209 original size:80 final size:80
Alignment explanation
Indices: 74746048--74746225 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
74746038 GAGTCACGTA
* * * * **
74746048 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
74746112 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
74746127 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
74746191 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
74746207 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74746226 GTATCATTCA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 69 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:74754233 original size:40 final size:40
Alignment explanation
Indices: 74754173--74754336 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
74754163 CGGGATTTAA
* ** *
74754173 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
74754213 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
74754253 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * * *
74754293 CCGGACATAATC-ACTAGCATAAATGCTTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
74754333 CCGG
1 CCGG
74754337 GTATCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:74754324 original size:80 final size:80
Alignment explanation
Indices: 74754159--74754336 Score: 189
Period size: 80 Copynumber: 2.2 Consensus size: 80
74754149 GAGTCACGTA
* * * ** **
74754159 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
* *
74754223 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
74754238 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGACATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGACATA
* *
74754302 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
*
74754318 CTTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74754337 GTATCATTCA
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
79 11 0.14
80 67 0.84
81 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
TAACTAGCACAAATG
Found at i:74762009 original size:147 final size:147
Alignment explanation
Indices: 74761742--74762035 Score: 543
Period size: 147 Copynumber: 2.0 Consensus size: 147
74761732 CCTTCAATAA
74761742 AACATTTTTAAGTATTTTAAAACAGTTCTTTTTTGAAATTCCAACTTTTAAAAGAAACCCAAATC
1 AACATTTTTAAGTATTTTAAAACAGTTCTTTTTTGAAATTCCAACTTTTAAAAGAAACCCAAATC
*
74761807 CACAGCTGAGTTTTGCAACTTGACTCTAATACCACTAAATGTAACACTCCAAATCTAGCCTAGCC
66 CACAGCTGAGTTTTGCAACTTGACTCTAATACCACTAAATGTAACACCCCAAATCTAGCCTAGCC
*
74761872 GTTATGGTCGAATCTGT
131 ATTATGGTCGAATCTGT
74761889 AACATTTTTAAGTATTTTAAAACAGTTCTTTTTTGAAATTCCAACTTTTAAAAGAAACCCAAATC
1 AACATTTTTAAGTATTTTAAAACAGTTCTTTTTTGAAATTCCAACTTTTAAAAGAAACCCAAATC
* * *
74761954 CACAGCTGAGTTTTGCAACTTGGCTCTGATACGACTAAATGTAACACCCCAAATCTAGCCTAGCC
66 CACAGCTGAGTTTTGCAACTTGACTCTAATACCACTAAATGTAACACCCCAAATCTAGCCTAGCC
74762019 ATTATGGTCGAATCTGT
131 ATTATGGTCGAATCTGT
74762036 GATGTCACAT
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
147 142 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (147 bp):
AACATTTTTAAGTATTTTAAAACAGTTCTTTTTTGAAATTCCAACTTTTAAAAGAAACCCAAATC
CACAGCTGAGTTTTGCAACTTGACTCTAATACCACTAAATGTAACACCCCAAATCTAGCCTAGCC
ATTATGGTCGAATCTGT
Found at i:74763966 original size:27 final size:27
Alignment explanation
Indices: 74763691--74763965 Score: 385
Period size: 27 Copynumber: 10.2 Consensus size: 27
74763681 CGATTTGTAA
74763691 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
74763718 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
**
74763745 AATTACTATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
74763772 AATTACCGTTTTACCC-CTAATTTACAT
1 AATTACCGTTTTACCCTC-GATTTACAG
* * *
74763799 AATTACCATTTTACCCCCGATTTACAT
1 AATTACCGTTTTACCCTCGATTTACAG
*
74763826 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
74763853 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
74763880 -ATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
74763906 AATTACTGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
74763933 AATTACTGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
74763960 AATTAC
1 AATTAC
74763966 TAAAATACCC
Statistics
Matches: 222, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
26 26 0.12
27 194 0.87
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:74764004 original size:134 final size:134
Alignment explanation
Indices: 74763702--74763964 Score: 339
Period size: 134 Copynumber: 2.0 Consensus size: 134
74763692 ATTACCGTTT
*** *
74763702 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGCAATACCCTCA-TTTACAGAATTACCATTTTACCCTCGATT
* *
74763767 TACAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCCCCGATTTACATAATTAT
65 TACAGAATTACCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCCCGATTTACAAAATTAT
**
74763832 CGTTT
130 CGTAA
***
74763837 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG-ATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGCAATACCCTC-ATTTACAGAATTACCATTTTACCCTCGATT
* * * * ** *
74763901 TATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
65 TACAGAATTACCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCCCGATTTACAAAATTA
74763965 CTAAAATACC
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
134 75 0.64
135 41 0.35
136 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (134 bp):
TACCCTCGATTTACAGAATTACCGCAATACCCTCATTTACAGAATTACCATTTTACCCTCGATTT
ACAGAATTACCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCCCGATTTACAAAATTATC
GTAA
Found at i:74765232 original size:25 final size:25
Alignment explanation
Indices: 74765203--74765250 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74765193 TTATAATATG
* * *
74765203 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74765228 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74765251 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Done.