Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 250 of 378
Found at i:74765319 original size:20 final size:20
Alignment explanation
Indices: 74765294--74765352 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74765284 TAAATATGGT
74765294 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74765314 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
74765334 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74765353 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74765471 original size:23 final size:24
Alignment explanation
Indices: 74765403--74765568 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
74765393 GAGGAAGTGA
74765403 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74765427 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74765451 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74765474 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
74765497 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
74765521 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
74765545 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74765569 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:74765479 original size:47 final size:47
Alignment explanation
Indices: 74765403--74765568 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
74765393 GAGGAAGTGA
74765403 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
74765450 CAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
74765497 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
74765545 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74765569 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 13 0.12
47 62 0.56
48 24 0.22
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:74765795 original size:31 final size:31
Alignment explanation
Indices: 74765760--74765854 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
74765750 CGTTTACAGT
74765760 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74765791 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
74765822 AAATGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74765853 AA
1 AA
74765855 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74768708 original size:27 final size:27
Alignment explanation
Indices: 74768678--74768967 Score: 377
Period size: 27 Copynumber: 10.7 Consensus size: 27
74768668 TACTGAAATG
** *
74768678 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
74768705 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
74768732 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
74768759 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
74768786 CCC-CTAATTTACATAATTACCATTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
* * *
74768813 CCCCCGATTTACATAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
74768840 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
74768867 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
74768894 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
74768921 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
74768948 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
74768968 TAAAATACCC
Statistics
Matches: 235, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 231 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:74769004 original size:81 final size:81
Alignment explanation
Indices: 74768678--74769011 Score: 233
Period size: 81 Copynumber: 4.1 Consensus size: 81
74768668 TACTGAAATG
** * * * ****
74768678 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTT
1 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TTT
* *****
74768742 ACAGAATTACTATTTTA
65 ATAGAATTACCGCAATA
* * * *** *
74768759 CCCTCGATTTACAGAATTACTGTTTTACCC-CTAATTTACATAATTACCATTTTACCCCCGATTT
1 CCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTACCAAAATACCCTCGATTT
* * * ***
74768823 ACATAATTATCGTTTTA
65 ATAGAATTACCGCAATA
* ***
74768840 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
* ***
74768905 TAGAATTACTGTTTTA
66 TAGAATTACCGCAATA
* * * * * *
74768921 CCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTG
1 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
74768986 T-GAAATTACCGCAATA
66 TAG-AATTACCGCAATA
*
74769002 CCCTCAATTT
1 CCCTCGATTT
74769012 GTAAAACTAC
Statistics
Matches: 212, Mismatches: 37, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 208 0.98
82 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
TAGAATTACCGCAATA
Found at i:74770235 original size:25 final size:25
Alignment explanation
Indices: 74770206--74770253 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74770196 TTATAATATG
* * *
74770206 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74770231 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74770254 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74770322 original size:20 final size:20
Alignment explanation
Indices: 74770297--74770355 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74770287 TAAATATGGT
74770297 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74770317 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
74770337 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74770356 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74770460 original size:24 final size:23
Alignment explanation
Indices: 74770406--74770571 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 23
74770396 GAGGAAGTGA
74770406 AAAAGGGCTTATGCCCCAGTTA-
1 AAAAGGGCTTATGCCCCAGTTAT
74770428 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
74770451 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
74770475 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
74770499 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
74770523 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
74770547 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74770571 A
1 A
74770572 TGATAAAGCA
Statistics
Matches: 134, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
22 22 0.16
23 22 0.16
24 80 0.60
25 10 0.07
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:74770521 original size:47 final size:46
Alignment explanation
Indices: 74770406--74770571 Score: 237
Period size: 47 Copynumber: 3.5 Consensus size: 46
74770396 GAGGAAGTGA
74770406 AAAAGGGCTTATGCCCCAGTTA-AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
74770451 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
* *
74770499 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
*
74770547 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
74770572 TGATAAAGCA
Statistics
Matches: 110, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
46 22 0.20
47 42 0.38
48 36 0.33
49 10 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:74770521 original size:71 final size:71
Alignment explanation
Indices: 74770406--74770571 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
74770396 GAGGAAGTGA
74770406 AAAAGGGCTTATGCCCCAGTTA-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
74770470 GTTATC
66 GTTATC
** *
74770476 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
74770541 GTTATT
66 GTTATC
*
74770547 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
74770572 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 22 0.25
71 54 0.61
72 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:74770797 original size:31 final size:31
Alignment explanation
Indices: 74770762--74770856 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
74770752 CGTTTACAGT
74770762 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74770793 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
74770824 AAATGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74770855 AA
1 AA
74770857 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74775659 original size:47 final size:47
Alignment explanation
Indices: 74775590--74775978 Score: 634
Period size: 47 Copynumber: 8.3 Consensus size: 47
74775580 CCCTTCGGGA
* * * *
74775590 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
74775637 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74775684 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
74775731 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74775778 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
74775825 CCTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
74775872 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74775919 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74775966 CTTATCACATATA
1 CTTATCACATATA
74775979 CATATCTTGT
Statistics
Matches: 324, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 324 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:74775693 original size:22 final size:22
Alignment explanation
Indices: 74775665--74775740 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74775655 TTTCACATTC
74775665 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
74775687 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
74775711 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74775734 ATCACAT
1 ATCACAT
74775741 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74775928 original size:22 final size:22
Alignment explanation
Indices: 74775900--74775975 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74775890 TTTCACATTC
74775900 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
74775922 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
74775946 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74775969 ATCACAT
1 ATCACAT
74775976 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74779390 original size:40 final size:40
Alignment explanation
Indices: 74779346--74779771 Score: 678
Period size: 40 Copynumber: 10.7 Consensus size: 40
74779336 CCAGTATGAT
* * * * *
74779346 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
74779386 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
74779426 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74779466 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74779506 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74779545 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74779585 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74779625 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74779665 TGCTCTTCGGGACTTAGCCCGGATATATCAC-AGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74779704 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74779744 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
74779772 GTCGAGACCT
Statistics
Matches: 362, Mismatches: 22, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
39 80 0.22
40 282 0.78
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:74779591 original size:159 final size:159
Alignment explanation
Indices: 74779341--74779771 Score: 695
Period size: 159 Copynumber: 2.7 Consensus size: 159
74779331 CGTCACCAGT
* * * * * ** *
74779341 ATGATTGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCAC
1 ATGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CAGCACGAATGCTCTTCGGGACTTAGCCC
* *
74779406 GGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTC
65 GGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
74779471 TTCGGGACTTAGCCCGGATACATCACTAGC
130 TTCGGGACTTAGCCCGGATACATCACTAGC
*
74779501 ATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCC
1 ATGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-AGCACGAATGCTCTTCGGGACTTAGCCC
*
74779565 GGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTC
65 GGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
74779630 TTCGGGACTTAGCCCGGATACATCACTAGC
130 TTCGGGACTTAGCCCGGATACATCACTAGC
*
74779660 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACAGCACGAATGCTCTTCGGGACTTAGCCCG
1 ATGAATGCTCTTCGGGACTTAGCCCGGATATATCACAGCACGAATGCTCTTCGGGACTTAGCCCG
* *
74779725 GATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CATC
66 GATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATC
74779772 GTCGAGACCT
Statistics
Matches: 252, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
158 4 0.02
159 215 0.85
160 33 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (159 bp):
ATGAATGCTCTTCGGGACTTAGCCCGGATATATCACAGCACGAATGCTCTTCGGGACTTAGCCCG
GATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
TCGGGACTTAGCCCGGATACATCACTAGC
Found at i:74779686 original size:199 final size:199
Alignment explanation
Indices: 74779346--74779767 Score: 711
Period size: 199 Copynumber: 2.1 Consensus size: 199
74779336 CCAGTATGAT
* * * **
74779346 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATA
*
74779411 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
*
74779476 GACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGC
131 GACTTAGCCCGGATACATCAC-AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGC
74779540 ACGAA
195 ACGAA
* * *
74779545 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATA
*
74779610 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
*
74779675 GACTTAGCCCGGATATATCACAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
131 GACTTAGCCCGGATACATCACAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
*
74779740 TGAA
196 CGAA
74779744 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
74779768 CATCGTCGAG
Statistics
Matches: 209, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
198 15 0.07
199 194 0.93
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (199 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATA
TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
GACTTAGCCCGGATACATCACAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
CGAA
Found at i:74779894 original size:38 final size:38
Alignment explanation
Indices: 74779825--74779899 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
74779815 GAATTTTAAT
*
74779825 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
74779863 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
74779900 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:74782390 original size:47 final size:47
Alignment explanation
Indices: 74782321--74782706 Score: 589
Period size: 47 Copynumber: 8.3 Consensus size: 47
74782311 CCCTTCGGGA
* * * *
74782321 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
74782368 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74782415 CTTATCACATATATACACTTTCACATTCATCAC-TTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
74782461 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74782508 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74782554 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74782601 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74782648 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74782694 CTTATCACATATA
1 CTTATCACATATA
74782707 CATATCTTGT
Statistics
Matches: 318, Mismatches: 19, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
46 106 0.33
47 212 0.67
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:74782483 original size:93 final size:94
Alignment explanation
Indices: 74782321--74782706 Score: 598
Period size: 93 Copynumber: 4.1 Consensus size: 94
74782311 CCCTTCGGGA
* * * * *
74782321 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGTCTTATCTCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
74782386 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
74782415 CTTATCACATATATACACTTTCACATTCATCAC-TTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
74782479 TTTCACATTCATCACGTTGGTCACTCGAC
66 TTTCACATTCATCACATTGGCCACTCGGC
* * * * *
74782508 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACT-GGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
74782572 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
* * *
74782601 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
74782666 TTTCACATTCATCACATTGGCCA-TCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
74782694 CTTATCACATATA
1 CTTATCACATATA
74782707 CATATCTTGT
Statistics
Matches: 267, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
93 187 0.70
94 80 0.30
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCACTCGGC
Found at i:74789966 original size:13 final size:13
Alignment explanation
Indices: 74789948--74789973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74789938 GATGCTTCCC
74789948 CGCCAGATGTTAT
1 CGCCAGATGTTAT
74789961 CGCCAGATGTTAT
1 CGCCAGATGTTAT
74789974 TACCGGTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
CGCCAGATGTTAT
Found at i:74795354 original size:40 final size:38
Alignment explanation
Indices: 74795301--74795393 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 38
74795291 ATGATATCTG
* * *
74795301 GGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCC
1 GGCTAAATCCCGAAGGC-CTTATGCGAGTGACTATATCC
* *
74795340 GGACTAAGAT-CCGAAGGCCTTGTGCGAGTGGCTATATCC
1 GG-CTAA-ATCCCGAAGGCCTTATGCGAGTGACTATATCC
74795379 GGCTAAATCCCGAAG
1 GGCTAAATCCCGAAG
74795394 ATACTTGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.04
38 10 0.22
39 21 0.46
40 12 0.26
41 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (38 bp):
GGCTAAATCCCGAAGGCCTTATGCGAGTGACTATATCC
Found at i:74799313 original size:15 final size:15
Alignment explanation
Indices: 74799295--74799325 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74799285 TAAAAAATTC
74799295 CAATACAAAACATAT
1 CAATACAAAACATAT
*
74799310 CAATCCAAAACATAT
1 CAATACAAAACATAT
74799325 C
1 C
74799326 TTTCATATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:74802711 original size:20 final size:20
Alignment explanation
Indices: 74802682--74802725 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
74802672 ATTTAATAAA
*
74802682 TAAAAATAAAAATCTAAAAG
1 TAAAAATAAAAATCTAAAAC
* *
74802702 TAAAAGTAAAAGTCTAAAAC
1 TAAAAATAAAAATCTAAAAC
74802722 TAAA
1 TAAA
74802726 TCTAAAAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAAAATAAAAATCTAAAAC
Found at i:74802731 original size:20 final size:20
Alignment explanation
Indices: 74802682--74802733 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
74802672 ATTTAATAAA
* * *
74802682 TAAAAATAAAAATCTAAAAG
1 TAAAACTAAAAGTCTAAAAC
*
74802702 TAAAAGTAAAAGTCTAAAAC
1 TAAAACTAAAAGTCTAAAAC
*
74802722 TAAATCTAAAAG
1 TAAAACTAAAAG
74802734 AGTAACTCAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.21
Consensus pattern (20 bp):
TAAAACTAAAAGTCTAAAAC
Found at i:74803863 original size:30 final size:30
Alignment explanation
Indices: 74803827--74803890 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 30
74803817 TTTAAAAATC
74803827 TTAAA-TTAAAAACTTAAGAGTGAGTGATTT
1 TTAAATTTAAAAACTTAAGAG-GAGTGATTT
74803857 TTAAATTTAAAAACTTAAGAGGAGTGATTT
1 TTAAATTTAAAAACTTAAGAGGAGTGATTT
74803887 TTAA
1 TTAA
74803891 TCTCTTAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 18 0.55
31 15 0.45
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.38
Consensus pattern (30 bp):
TTAAATTTAAAAACTTAAGAGGAGTGATTT
Found at i:74805445 original size:55 final size:55
Alignment explanation
Indices: 74805380--74805635 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 55
74805370 ATTAGGGTTT
* *
74805380 AAGGATATCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * *
74805435 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGAG-AA-GTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTG-GTAAGGTT--TCTAAGGC
* * * *
74805490 AAAGG-TCCCA-GTAAGAACATGCCAAGGCATGGC-ATTGGT--GATTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGC
* *
74805542 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * *
74805591 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
74805636 ACCCATGTAT
Statistics
Matches: 166, Mismatches: 22, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
49 38 0.23
50 2 0.01
51 5 0.03
52 12 0.07
53 29 0.17
54 35 0.21
55 41 0.25
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:74805846 original size:16 final size:16
Alignment explanation
Indices: 74805825--74805855 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74805815 ATAAATTTGA
74805825 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74805841 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74805856 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74807560 original size:49 final size:50
Alignment explanation
Indices: 74807478--74807709 Score: 267
Period size: 49 Copynumber: 4.7 Consensus size: 50
74807468 AGCTATTGTG
* * *
74807478 AGGTCACGTGTGTAGTACTAAGTGTAGGTTACTACGTGTACTAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
* * *
74807528 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCT-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATAA-TT
* * * **
74807578 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCA-ATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT
* * *
74807627 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGGTAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
*
74807677 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74807710 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
49 110 0.71
50 10 0.06
51 34 0.22
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
Found at i:74807615 original size:28 final size:28
Alignment explanation
Indices: 74807583--74807665 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 28
74807573 AACTTCGATC
74807583 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
*
74807611 AC--GTGTA-T-C-AA-TGGTTAGG-T-C-
1 ACGTGTGTAGTACTAAGT-G-CAGGCTACT
74807632 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74807660 ACGTGT
1 ACGTGT
74807666 ACTGGGTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 22
0.64 0.03 0.33
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 9 0.21
24 5 0.12
25 5 0.12
26 9 0.21
27 2 0.05
28 8 0.19
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74807654 original size:100 final size:98
Alignment explanation
Indices: 74807481--74807709 Score: 284
Period size: 100 Copynumber: 2.3 Consensus size: 98
74807471 TATTGTGAGG
* * *
74807481 TCACGTGTGTAGTACTAAGTGTAGGTTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
*
74807546 AAGTGCAGGCTACTATGCGTACCT-GATAACTTCGA
66 AAGTGCAGGCTACTACGCGTA-CTGGATAA-TT-GA
** *
74807581 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCA-ATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-GGTCACATGTGTAGTA
* * *
74807644 CTAAGTGCAGGCTACTACGTGTACTGGGTAATTGG
64 CTAAGTGCAGGCTACTACGCGTACTGGATAATTGA
* *
74807679 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
74807710 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
98 30 0.26
99 9 0.08
100 75 0.66
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACTGGATAATTGA
Found at i:74808846 original size:39 final size:39
Alignment explanation
Indices: 74808792--74808869 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
74808782 ATTATTATTT
74808792 GGCCAAATATATTTGTATTTAGTGAGCTAATGATTCTAA
1 GGCCAAATATATTTGTATTTAGTGAGCTAATGATTCTAA
*
74808831 GGCCAAATATATTTGTCTTTAGTGAGCTAATGATTCTAA
1 GGCCAAATATATTTGTATTTAGTGAGCTAATGATTCTAA
74808870 CTTATAAATC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (39 bp):
GGCCAAATATATTTGTATTTAGTGAGCTAATGATTCTAA
Found at i:74810198 original size:51 final size:48
Alignment explanation
Indices: 74810120--74810218 Score: 171
Period size: 51 Copynumber: 2.0 Consensus size: 48
74810110 ATATTATGGA
74810120 ATTTGGGATGGTAGTAGTTAAAGGAATAATGTTCGAAATAAGGAAATG
1 ATTTGGGATGGTAGTAGTTAAAGGAATAATGTTCGAAATAAGGAAATG
74810168 ATTTGGGATGGTAGAAATAGTTAAAGGAATAATGTTCGAAATAAGGAAATG
1 ATTTGGGATGGTAG---TAGTTAAAGGAATAATGTTCGAAATAAGGAAATG
74810219 TTCCCTGATC
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
48 14 0.29
51 34 0.71
ACGTcount: A:0.41, C:0.02, G:0.28, T:0.28
Consensus pattern (48 bp):
ATTTGGGATGGTAGTAGTTAAAGGAATAATGTTCGAAATAAGGAAATG
Found at i:74810588 original size:16 final size:14
Alignment explanation
Indices: 74810540--74810593 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
74810530 GTGCTGTAAA
*
74810540 TTGGATTCTCGTATC
1 TTGGATTCT-TTATC
*
74810555 ATGGATTCTTTATC
1 TTGGATTCTTTATC
74810569 TTGGATTTCTTTATTC
1 TTGGA-TTCTTTA-TC
*
74810585 TTGGCTTCT
1 TTGGATTCT
74810594 CTATTTCAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.24
15 19 0.58
16 6 0.18
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.54
Consensus pattern (14 bp):
TTGGATTCTTTATC
Found at i:74813453 original size:51 final size:50
Alignment explanation
Indices: 74813327--74813570 Score: 298
Period size: 51 Copynumber: 4.9 Consensus size: 50
74813317 TATTGTGAGG
* * * *
74813327 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CTAGATAA-TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCT-GATAACTTGA
* *
74813376 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT-GA
* * * * *
74813427 TCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CTAGATAA-TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCT-GATAACTTGA
* *
74813476 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAAC-TTGA
*
74813527 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATA
74813571 GCTTCGGCTA
Statistics
Matches: 165, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
49 74 0.45
50 10 0.06
51 81 0.49
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTGA
Found at i:74813570 original size:100 final size:100
Alignment explanation
Indices: 74813327--74813557 Score: 435
Period size: 100 Copynumber: 2.3 Consensus size: 100
74813317 TATTGTGAGG
74813327 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
74813392 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
*
74813427 TCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
*
74813492 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
*
74813527 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTA
74813558 TGCGTACCAG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 127 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
Found at i:74827744 original size:40 final size:40
Alignment explanation
Indices: 74827689--74827806 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
74827679 TGGAAAAAAA
74827689 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
74827729 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
74827769 TATAACCGAGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
74827807 GTTACATCCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:74836553 original size:48 final size:47
Alignment explanation
Indices: 74836482--74836661 Score: 243
Period size: 48 Copynumber: 3.8 Consensus size: 47
74836472 GCCCTAGATA
*
74836482 CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCTGAAGTG
1 CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACC-GAAGTG
* *
74836530 CCAATATCATGGCCCAAAGCCAAATCAATGAAGCTCACATCCAAAGTG
1 CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACA-CCGAAGTG
* * *
74836578 CTAATATCATGGCCTGAAGCCAAATCAATGAAGCTCACACCCGAAGTA
1 CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACA-CCGAAGTG
* * * *
74836626 CTAATTTCATGGCCTGAAGCCAAATTAATGAAGCTC
1 CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTC
74836662 TTAATGACAT
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 118 0.98
49 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.19
Consensus pattern (47 bp):
CCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCGAAGTG
Found at i:74836648 original size:96 final size:96
Alignment explanation
Indices: 74836484--74836661 Score: 275
Period size: 96 Copynumber: 1.9 Consensus size: 96
74836474 CCTAGATACC
* * *
74836484 AATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCTGAAGTGCCAATATCATGGCCCAAAG
1 AATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCGAAGTACCAATATCATGGCCCAAAG
74836549 CCAAATCAATGAAGCTCACATCCAAAGTGCT
66 CCAAATCAATGAAGCTCACATCCAAAGTGCT
* * * **
74836580 AATATCATGGCCTGAAGCCAAATCAATGAAGCTCACACCCGAAGTACTAATTTCATGGCCTGAAG
1 AATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCGAAGTACCAATATCATGGCCCAAAG
*
74836645 CCAAATTAATGAAGCTC
66 CCAAATCAATGAAGCTC
74836662 TTAATGACAT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (96 bp):
AATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCGAAGTACCAATATCATGGCCCAAAG
CCAAATCAATGAAGCTCACATCCAAAGTGCT
Found at i:74838072 original size:21 final size:21
Alignment explanation
Indices: 74838042--74838084 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
74838032 TCATCATCAC
*
74838042 AAGAAGAAATCAAAAAGATTG
1 AAGAACAAATCAAAAAGATTG
* *
74838063 AAGAACAAATCCAAAAGCTTG
1 AAGAACAAATCAAAAAGATTG
74838084 A
1 A
74838085 CAAGATTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.12, G:0.16, T:0.14
Consensus pattern (21 bp):
AAGAACAAATCAAAAAGATTG
Found at i:74844143 original size:40 final size:41
Alignment explanation
Indices: 74843983--74844171 Score: 263
Period size: 41 Copynumber: 4.6 Consensus size: 41
74843973 AGCAATAGTT
* * * *
74843983 GCGCTTTCGATAAAATGCCGCTAAAAACCAGAGAATTAGCT
1 GCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
* * ** *
74844024 GCACTTTTGGTAAAACGCTACTAAAAACTAGAGCATTAGCG
1 GCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
*
74844065 GCGCTTTCGGTCAAACGCCGCTAAAAACCAGAGCATTAGCG
1 GCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
* *
74844106 GCTCTTTCAGTAAAACGCCGCT-AAAACCAGAGCATTAGCG
1 GCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
74844146 GCGCTTTCGGTAAAACGCCGCTAAAA
1 GCGCTTTCGGTAAAACGCCGCTAAAA
74844172 GTTATACAAC
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 38 0.30
41 89 0.70
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (41 bp):
GCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
Found at i:74844258 original size:23 final size:23
Alignment explanation
Indices: 74844229--74844305 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
74844219 GATCTATAAC
74844229 CCCT-AAAACACTAAAACACTAAA
1 CCCTAAAAAC-CTAAAACACTAAA
*
74844252 CCCTAAAAACCTTAAACACTAAA
1 CCCTAAAAACCTAAAACACTAAA
* * *
74844275 --CTATAACCCTTAAAACCCTAAA
1 CCCTAAAAACC-TAAAACACTAAA
*
74844297 CCCCAAAAA
1 CCCTAAAAA
74844306 ATATCATATG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
21 7 0.17
22 10 0.24
23 16 0.38
24 9 0.21
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (23 bp):
CCCTAAAAACCTAAAACACTAAA
Found at i:74844260 original size:16 final size:16
Alignment explanation
Indices: 74844234--74844274 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
74844224 ATAACCCCTA
74844234 AAACACT-AAAACAC-T
1 AAACACTAAAAAC-CTT
*
74844249 AAACCCTAAAAACCTT
1 AAACACTAAAAACCTT
74844265 AAACACTAAA
1 AAACACTAAA
74844275 CTATAACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.15
Consensus pattern (16 bp):
AAACACTAAAAACCTT
Found at i:74844289 original size:53 final size:55
Alignment explanation
Indices: 74844184--74844296 Score: 149
Period size: 53 Copynumber: 2.1 Consensus size: 55
74844174 TATACAACCC
* * * *
74844184 CTAAAACCCTAAACCCTAAAAATATCATAAACACTGATCTATAACCCCTAAAACA
1 CTAAAACACTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
* * *
74844239 CTAAAACACTAAACCCT-AAAA-ACCTTAAACACTAAACTATAACCCTTAAAACC
1 CTAAAACACTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
74844292 CTAAA
1 CTAAA
74844297 CCCCAAAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 31 0.61
54 4 0.08
55 16 0.31
ACGTcount: A:0.50, C:0.29, G:0.01, T:0.19
Consensus pattern (55 bp):
CTAAAACACTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
Found at i:74844422 original size:7 final size:7
Alignment explanation
Indices: 74844411--74844477 Score: 62
Period size: 7 Copynumber: 9.4 Consensus size: 7
74844401 TTTATTTTTG
*
74844411 GGTTTAG
1 GGTTTAA
74844418 GGTTTAA
1 GGTTTAA
**
74844425 TATTTAA
1 GGTTTAA
74844432 GGTTTAA
1 GGTTTAA
74844439 GGTTTAA
1 GGTTTAA
* *
74844446 GGTCTAT
1 GGTTTAA
*
74844453 GGTTTAG
1 GGTTTAA
*
74844460 GGTTTTAT
1 GG-TTTAA
74844468 GGTTTAA
1 GGTTTAA
74844475 GGT
1 GGT
74844478 CTAATGGCCA
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
7 42 0.88
8 6 0.12
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.46
Consensus pattern (7 bp):
GGTTTAA
Found at i:74845418 original size:8 final size:8
Alignment explanation
Indices: 74845405--74845442 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
74845395 ATTTAAAAAT
74845405 AAAAATTA
1 AAAAATTA
74845413 AAAAATTA
1 AAAAATTA
74845421 AAAAA-TA
1 AAAAATTA
* *
74845428 AAAAACTC
1 AAAAATTA
74845436 AAAAATT
1 AAAAATT
74845443 TAATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATTA
Found at i:74845422 original size:15 final size:15
Alignment explanation
Indices: 74845394--74845442 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
74845384 GTTCTCATTT
*
74845394 AATTTAAAAA-TAAA
1 AATTAAAAAATTAAA
74845408 AATTAAAAAATTAAA
1 AATTAAAAAATTAAA
* *
74845423 AAATAAAAAACTCAAA
1 AATTAAAAAA-TTAAA
74845439 AATT
1 AATT
74845443 TAATATTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 9 0.31
15 13 0.45
16 7 0.24
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (15 bp):
AATTAAAAAATTAAA
Found at i:74845432 original size:7 final size:7
Alignment explanation
Indices: 74845399--74845432 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
74845389 CATTTAATTT
74845399 AAAAATA
1 AAAAATA
*
74845406 AAAATTA
1 AAAAATA
74845413 AAAAATTA
1 AAAAA-TA
74845421 AAAAATA
1 AAAAATA
74845428 AAAAA
1 AAAAA
74845433 CTCAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
AAAAATA
Found at i:74849307 original size:40 final size:39
Alignment explanation
Indices: 74849224--74849415 Score: 145
Period size: 40 Copynumber: 4.8 Consensus size: 39
74849214 TCGAATGATG
* * * * *
74849224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
74849264 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
74849304 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
74849343 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
74849384 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
74849416 CGTTATATCC
Statistics
Matches: 123, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:74849364 original size:79 final size:82
Alignment explanation
Indices: 74849224--74849408 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
74849214 TCGAATGATG
* * *
74849224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
74849288 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* * **
74849304 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTATTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
74849366 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
74849384 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74849409 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:74849430 original size:79 final size:79
Alignment explanation
Indices: 74849277--74849441 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
74849267 GGACTAGGAT
* * *
74849277 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAA
1 CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
74849342 ACCCGGGTTAAGTC
66 ACCCGGGTTAAGTC
* ** * *
74849356 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTT
1 CCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCATT
* * *
74849420 ATATCC-GGTTAAGTT
64 AAACCCGGGTTAAGTC
74849435 CCGAAGG
1 CCGAAGG
74849442 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
ACCCGGGTTAAGTC
Found at i:74852252 original size:29 final size:29
Alignment explanation
Indices: 74852210--74852291 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
74852200 TGCCGTATTT
**
74852210 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
74852239 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
74852268 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACTTAGTGCC
74852292 GATCTCGTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:74859632 original size:49 final size:49
Alignment explanation
Indices: 74859576--74859887 Score: 545
Period size: 49 Copynumber: 6.4 Consensus size: 49
74859566 TACATATATG
* * * *
74859576 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74859625 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
74859673 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
74859722 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74859771 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74859820 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74859869 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
74859888 TAATGTAAAA
Statistics
Matches: 256, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 47 0.18
49 209 0.82
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:74860039 original size:37 final size:37
Alignment explanation
Indices: 74859989--74860110 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
74859979 GGAATATGTT
*
74859989 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
74860026 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
74860063 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
74860100 CCGGGTAAGAC
1 CCGGGTAAGAC
74860111 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:74862177 original size:29 final size:29
Alignment explanation
Indices: 74862141--74862382 Score: 459
Period size: 29 Copynumber: 8.4 Consensus size: 29
74862131 AATATGGGCA
74862141 ATGTGTGCGAGATCAGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862170 ATGTGTGCGAGATCAGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862199 ATGTGTGCGAGATCAGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862228 ATGTGTGCGAGATC-GTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862256 ATGTGTGCGAGATCAGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862285 ATGTGTGCGAGATCAGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
*
74862314 ATGTGTGCGAGATCGGTAATCGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
*
74862343 ATGTGTGCGAGATCAGTAATTGAGGCACT
1 ATGTGTGCGAGATCAGTAATCGAGGCACT
74862372 ATGTGTGCGAG
1 ATGTGTGCGAG
74862383 TTTTTCAACA
Statistics
Matches: 209, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
28 28 0.13
29 181 0.87
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGTGTGCGAGATCAGTAATCGAGGCACT
Found at i:74862343 original size:115 final size:116
Alignment explanation
Indices: 74862141--74862382 Score: 459
Period size: 115 Copynumber: 2.1 Consensus size: 116
74862131 AATATGGGCA
74862141 ATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTG
1 ATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTG
74862206 CGAGATCAGTAATCGAGGCACTATGTGTGCGAGATC-GTAATCGAGGCACT
66 CGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACT
74862256 ATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTG
1 ATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTG
* *
74862321 CGAGATCGGTAATCGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACT
66 CGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACT
74862372 ATGTGTGCGAG
1 ATGTGTGCGAG
74862383 TTTTTCAACA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
115 100 0.81
116 24 0.19
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (116 bp):
ATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTG
CGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACT
Found at i:74862964 original size:40 final size:41
Alignment explanation
Indices: 74862866--74862964 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
74862856 TTCGAATGGT
* ** * *
74862866 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
74862907 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
74862948 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
74862965 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:74865739 original size:49 final size:49
Alignment explanation
Indices: 74865686--74865918 Score: 412
Period size: 49 Copynumber: 4.8 Consensus size: 49
74865676 TACATATATG
* *
74865686 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCAATGCGATGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
74865735 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
*
74865784 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
* *
74865833 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
*
74865882 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGC
74865919 TAATGTAAAA
Statistics
Matches: 180, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 180 1.00
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAA
Found at i:74866070 original size:37 final size:37
Alignment explanation
Indices: 74866020--74866104 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
74866010 GGAATATGTT
*
74866020 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
74866057 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
74866094 CCGGGTAAGAC
1 CCGGGTAAGAC
74866105 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:74870395 original size:40 final size:39
Alignment explanation
Indices: 74870312--74870503 Score: 145
Period size: 40 Copynumber: 4.8 Consensus size: 39
74870302 TCGAATGATG
* * * * *
74870312 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
74870352 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
74870392 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
74870431 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
74870472 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
74870504 CGTTATATCC
Statistics
Matches: 123, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:74870452 original size:79 final size:82
Alignment explanation
Indices: 74870312--74870496 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
74870302 TCGAATGATG
* * *
74870312 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
74870376 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* * **
74870392 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTATTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
74870454 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
74870472 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74870497 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:74870518 original size:79 final size:79
Alignment explanation
Indices: 74870365--74870529 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
74870355 GGACTAGGAT
* * *
74870365 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAA
1 CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
74870430 ACCCGGGTTAAGTC
66 ACCCGGGTTAAGTC
* ** * *
74870444 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTT
1 CCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCATT
* * *
74870508 ATATCC-GGTTAAGTT
64 AAACCCGGGTTAAGTC
74870523 CCGAAGG
1 CCGAAGG
74870530 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
ACCCGGGTTAAGTC
Found at i:74878124 original size:23 final size:23
Alignment explanation
Indices: 74878090--74878279 Score: 115
Period size: 23 Copynumber: 8.3 Consensus size: 23
74878080 TGGCTGCTGT
*
74878090 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAGATGCTGCAAATTGAAG
* *
74878113 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAGATGCTGCAAATTGAAG
* *
74878135 ATGTTT-TATCGCTG-TAATTG-AG
1 -TGTTTAGAT-GCTGCAAATTGAAG
* * * **
74878157 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAGATGCTGCAAATTGAAG
*
74878180 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAGA-TGCTGCAAATTGAAG
* *
74878204 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAGATGCTGCAAATTGAAG
* * *
74878227 TGCTTAAATGTTGCAAATTGAAG
1 TGTTTAGATGCTGCAAATTGAAG
* *
74878250 TGTTTA-AGTACTGCAGATTGAAG
1 TGTTTAGA-TGCTGCAAATTGAAG
74878273 TGTTTAG
1 TGTTTAG
74878280 TTACTGGACA
Statistics
Matches: 135, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
22 22 0.16
23 106 0.79
24 7 0.05
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (23 bp):
TGTTTAGATGCTGCAAATTGAAG
Found at i:74878213 original size:46 final size:45
Alignment explanation
Indices: 74878093--74878653 Score: 352
Period size: 46 Copynumber: 12.0 Consensus size: 45
74878083 CTGCTGTTGT
** *
74878093 TTAAATGCTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATG
1 TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TG
** * * * *
74878138 TTTTATCGCTG-TAATTG-AGTTGTATAAATGTTGTTAATTG-AGATG
1 TTAAAT-GCTGCAAATTGAAG-TGTTTAAATGCTGTAAATTGAAG-TG
74878183 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
1 TTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
* * * * *
74878229 CTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAGATTGAAGTG
1 -TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
** * * * * * *
74878275 TTTAGTTACTGGACATTGAGATGTTTTATCGCTGTATAAATGTTGTTAATTGAGGTG
1 -TTAAATGCTGCAAATTGA-A-G-----T-G-T-T-TAAATGCTGTAAATTGAAGTG
*
74878332 TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTG
1 TTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
*
74878378 TTAAACTGCTG-AAATTGAAGTGTTTGAATGCTGTAAATTGAAGTG
1 TTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
* * *
74878423 TTTAAATGTTGTAAATTGAAGTGTTTAAATGGTGTAAATTGAAGTG
1 -TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
* * *
74878469 CTTAAATGTTGCAAATTGAAGTGTTTAAGA-ACTGCAAATTGAAGTG
1 -TTAAATGCTGCAAATTGAAGTGTTTAA-ATGCTGTAAATTGAAGTG
** * * * *
74878515 TTTAGTTGCTGGACATTG-AGATGTTT-TATCGCTGT-AATTGAGGTG
1 -TTAAATGCTGCAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTG
* ** * *
74878560 TATAAATGTTGTTAATTGAGGTG-TTAAAGTGCTGGAAATTGAAGTG
1 T-TAAATGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTG
* * * ** *
74878606 TTTGAATGCTGTC-AATTGAAATGTTTAAGTATTGCAAATTGAAGTG
1 -TTAAATGCTG-CAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
74878652 TT
1 TT
74878654 TAAGTACTTA
Statistics
Matches: 401, Mismatches: 82, Indels: 66
0.73 0.15 0.12
Matches are distributed among these distances:
44 6 0.01
45 102 0.25
46 239 0.60
47 17 0.04
48 2 0.00
49 1 0.00
50 1 0.00
53 1 0.00
54 1 0.00
55 2 0.00
56 5 0.01
57 24 0.06
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (45 bp):
TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG
Found at i:74878292 original size:23 final size:23
Alignment explanation
Indices: 74878181--74878293 Score: 84
Period size: 23 Copynumber: 4.9 Consensus size: 23
74878171 TTAATTGAGA
* * *
74878181 TGTTAAAGTGCTGCAAATTGAAG
1 TGTTTAAGTACTGCACATTGAAG
* * * *
74878204 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAGTACTGCACATTGAAG
* * ** *
74878227 TGCTTAAATGTTGCAAATTGAAG
1 TGTTTAAGTACTGCACATTGAAG
*
74878250 TGTTTAAGTACTGCAGATTGAAG
1 TGTTTAAGTACTGCACATTGAAG
*
74878273 TGTTT-AGTTACTGGACATTGA
1 TGTTTAAG-TACTGCACATTGA
74878294 GATGTTTTAT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
22 2 0.03
23 74 0.97
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (23 bp):
TGTTTAAGTACTGCACATTGAAG
Found at i:74878348 original size:23 final size:22
Alignment explanation
Indices: 74878311--74878653 Score: 244
Period size: 23 Copynumber: 15.0 Consensus size: 22
74878301 TATCGCTGTA
* * *
74878311 TAAATGTTGTTAATTGAGGTGT
1 TAAATGCTGTAAATTGAAGTGT
*
74878333 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTG-T
*
74878357 TTAATGCTGTAAATTGAAGTGT
1 TAAATGCTGTAAATTGAAGTGT
74878379 TAAACTGCTG-AAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTG-T
*
74878402 TGAATGCTGTAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTG-T
*
74878425 TAAATGTTGTAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTG-T
*
74878448 TAAATGGTGTAAATTGAAGTGCT
1 TAAATGCTGTAAATTGAAGTG-T
* *
74878471 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTG-T
* *
74878494 TAAGA-ACTGCAAATTGAAGTGTT
1 TAA-ATGCTGTAAATTGAAGTG-T
** * *
74878517 TAGTTGCTGGACATTG-AGATGT
1 TAAATGCTGTAAATTGAAG-TGT
** *
74878539 TTTATCGCTGT-AATTGAGGTGT
1 TAAAT-GCTGTAAATTGAAGTGT
* * *
74878561 ATAAATGTTGTTAATTGAGGTGT
1 -TAAATGCTGTAAATTGAAGTGT
*
74878584 TAAAGTGCTGGAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTG-T
* * *
74878608 TGAATGCTGTCAATTGAAATGTT
1 TAAATGCTGTAAATTGAAGTG-T
* ** *
74878631 TAAGTATTGCAAATTGAAGTGT
1 TAAATGCTGTAAATTGAAGTGT
74878653 T
1 T
74878654 TAAGTACTTA
Statistics
Matches: 261, Mismatches: 46, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
22 46 0.18
23 206 0.79
24 9 0.03
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.38
Consensus pattern (22 bp):
TAAATGCTGTAAATTGAAGTGT
Found at i:74878521 original size:240 final size:240
Alignment explanation
Indices: 74878093--74878656 Score: 719
Period size: 240 Copynumber: 2.3 Consensus size: 240
74878083 CTGCTGTTGT
* * * *
74878093 TTAAA-TGCTGCAAATTGAAGTG-TTTAGTTGCTGGAAATTG-AGATGTTTTATCGCTGTAATTG
1 TTAAAGTGCTGCAAATTGAAGTGTTTTA-ATGCTGTAAATTGAAG-TGTTTAAT-GCTGAAATTG
* * *
74878155 -AGTTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTA
63 AAG-TGTTTAAATGCTGTAAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTA
* *
74878219 AATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAGATTGAAGTGTTTAGTTAC
127 AATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGAACTGCAAATTGAAGTGTTTAGTTAC
74878284 TGGACATTGAGATGTTTTATCGC-TGTATAAATGTTGTTAATTGAGGTG
192 TGGACATTGAGATGTTTTATCGCGTGTATAAATGTTGTTAATTGAGGTG
*
74878332 TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTAAACTGCTGAAATTGAA
1 TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTTAA-TGCTGAAATTGAA
* * * *
74878397 GTGTTTGAATGCTGTAAATTGA-AGTGTTTAAA-TGTTGTAAATTGAAGTGTTTAAATGGTGTAA
65 GTGTTTAAATGCTGTAAATTGAGA-TG-TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAA
*
74878460 ATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGAACTGCAAATTGAAGTGTTTAGTTGCT
128 ATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGAACTGCAAATTGAAGTGTTTAGTTACT
74878525 GGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGGTG
193 GGACATTGAGATGTTTTATCGC----------GTGTATAAATGTTGTTAATTGAGGTG
* * * * **
74878583 TTAAAGTGCTGGAAATTGAAGTGTTTGAATGCTGTCAATTGAAATGTTTAAGTATTGCAAATTGA
1 TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTTAA-TGCTG-AAATTGA
74878648 AGTGTTTAA
64 AGTGTTTAA
74878657 GTACTTATTT
Statistics
Matches: 282, Mismatches: 24, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
239 6 0.02
240 173 0.61
241 14 0.05
251 74 0.26
252 15 0.05
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (240 bp):
TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTTAATGCTGAAATTGAAG
TGTTTAAATGCTGTAAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATT
GAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGAACTGCAAATTGAAGTGTTTAGTTACTGGA
CATTGAGATGTTTTATCGCGTGTATAAATGTTGTTAATTGAGGTG
Found at i:74878566 original size:137 final size:134
Alignment explanation
Indices: 74878311--74878656 Score: 369
Period size: 137 Copynumber: 2.5 Consensus size: 134
74878301 TATCGCTGTA
* * * *
74878311 TAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTTAATG-CTGTAAATTGAA
1 TAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTG-TTTAA-GACTGCAAATTGAA
* *
74878375 GTGTTAAACTGCTGAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATT
63 GTGTTTAACTGCTGAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTATAAATGTTGTAAATT
74878440 GAAGTGTT
128 GAAGTG-T
* *
74878448 TAAATGGTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGAACTGCAAATTGAAG
1 TAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGTTTAAG-ACTGCAAATTGAAG
** * * * *
74878513 TGTTTAGTTGCTGGACATTG-AGATGTTT-TATCGCTGT-AATTGAGGTGTATAAATGTTGTTAA
64 TGTTTAACTGCT-GAAATTGAAG-TGTTTGAAT-GCTGTAAATTGAAGTGTATAAATGTTGTAAA
*
74878575 TTGAGGTGT
126 TTGAAGTGT
* * * *
74878584 TAAAGTGCTGGAAATTGAAGTGTTTGAATGCTGTC-AATTGAAATGTTTAAGTATTGCAAATTGA
1 TAAA-TGCTGTAAATTGAAGTG-TTAAATGCTG-CAAATTGAAGTGTTTAAG-ACTGCAAATTGA
74878648 AGTGTTTAA
62 AGTGTTTAA
74878657 GTACTTATTT
Statistics
Matches: 178, Mismatches: 23, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
135 1 0.01
136 10 0.06
137 145 0.81
138 22 0.12
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (134 bp):
TAAATGCTGTAAATTGAAGTGTTAAATGCTGCAAATTGAAGTGTTTAAGACTGCAAATTGAAGTG
TTTAACTGCTGAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTATAAATGTTGTAAATTGAA
GTGT
Found at i:74878616 original size:91 final size:91
Alignment explanation
Indices: 74878322--74878656 Score: 279
Period size: 91 Copynumber: 3.7 Consensus size: 91
74878312 AAATGTTGTT
* * * *
74878322 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAGTG-TTAAACTG
1 AATTGAAGTGTTTAA-TGCTGGAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAA-TG
* * *
74878386 CTG-AAATTGAAGTGTTTGAA-TGCTGTA
64 TTGCAAATTGAAGTG-TTAAAGTGCTGCA
* * *
74878413 AATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAATGGTGTAAATTGAAGTGCTTAAATGT
1 AATTGAAGTGTTT-AATGCTGGAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGT
* **
74878478 TGCAAATTGAAGTGTTTAAGAACTGCA
65 TGCAAATTGAAGTGTTAAAGTGCTGCA
* * * *
74878505 AATTGAAGTGTTTAGTTGCTGGACATTG-AGATGTTT-TATCGCTGT-AATTGAGGTG-TATAAA
1 AATTGAAGTGTTTA-ATGCTGGAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTGCT-TAAA
** * *
74878566 TGTTGTTAATTGAGGTGTTAAAGTGCTGGA
62 TGTTGCAAATTGAAGTGTTAAAGTGCTGCA
** * * ** * *
74878596 AATTGAAGTGTTTGAATGCTGTCAATTGAAATGTTTAAGTATTGCAAATTGAAGTGTTTAA
1 AATTGAAGTGTTT-AATGCTGGAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAA
74878657 GTACTTATTT
Statistics
Matches: 195, Mismatches: 36, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
90 1 0.01
91 125 0.64
92 68 0.35
93 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (91 bp):
AATTGAAGTGTTTAATGCTGGAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTT
GCAAATTGAAGTGTTAAAGTGCTGCA
Found at i:74885420 original size:30 final size:30
Alignment explanation
Indices: 74885386--74885443 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
74885376 AAGACCATTT
* *
74885386 CCACACGGGCTGAG-CACACACCCATGTGAG
1 CCACACAGGCTG-GCCACACACACATGTGAG
74885416 CCACACAGGCTGGCCACACACACATGTG
1 CCACACAGGCTGGCCACACACACATGTG
74885444 GTAGCCCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.28, C:0.38, G:0.24, T:0.10
Consensus pattern (30 bp):
CCACACAGGCTGGCCACACACACATGTGAG
Found at i:74886093 original size:21 final size:21
Alignment explanation
Indices: 74886064--74886105 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
74886054 CTTTAGCCAT
74886064 TTTTATTTTTATTGTAATTTA
1 TTTTATTTTTATTGTAATTTA
* *
74886085 TTTTGTTTTTATTTTAATTTA
1 TTTTATTTTTATTGTAATTTA
74886106 CTAACTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTATTTTTATTGTAATTTA
Found at i:74891504 original size:48 final size:48
Alignment explanation
Indices: 74891440--74891567 Score: 193
Period size: 48 Copynumber: 2.7 Consensus size: 48
74891430 CAAGGTAAAT
* * *
74891440 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
74891488 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
74891536 AGATGTATATTTGGTAAAGCCGAATGGCTAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAT
74891568 GTGCAATACG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:74891591 original size:48 final size:47
Alignment explanation
Indices: 74891451--74891594 Score: 182
Period size: 48 Copynumber: 3.0 Consensus size: 47
74891441 TATATATGTG
* * *
74891451 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
*
74891499 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * *
74891547 TGGTAAAGCCGAATGGCTAATGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
74891595 GTGGCCGAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
48 82 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:74895986 original size:42 final size:42
Alignment explanation
Indices: 74895927--74896038 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
74895917 TGTTATCATA
* * * **
74895927 TAAGACCTTATTTGGGATATGGCGTTGATGTGATATTTAATG
1 TAAGACCATATTTGGGATATGGCATTGATGTGAGATCCAATG
* * *
74895969 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATG
1 TAAGACCATATTTGGGATATGGCATTGATGTGAGATCCAATG
* *
74896011 TAAGACCATGTTTGGGACATGGCATTGA
1 TAAGACCATATTTGGGATATGGCATTGA
74896039 CATCTTAATG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (42 bp):
TAAGACCATATTTGGGATATGGCATTGATGTGAGATCCAATG
Found at i:74899694 original size:18 final size:20
Alignment explanation
Indices: 74899658--74899704 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74899648 AGTTGTAAGT
74899658 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74899678 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74899697 ATGATATA
1 AT-ATATA
74899705 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:74900133 original size:50 final size:50
Alignment explanation
Indices: 74900051--74900345 Score: 304
Period size: 50 Copynumber: 5.9 Consensus size: 50
74900041 ATTTGTTGTG
74900051 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* * * * ** * *
74900101 AGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CTTTAACTT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TA
* * ** * * *
74900151 CGATCACGTGTGTAGTACTAAGTGTAGAATACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* * ** *
74900202 AGTCACGTGTGTAGTACTAAATGTAGGCTACTATATGTACTAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* ** * * * *
74900252 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* *
74900302 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
74900346 GAGCTTTGGT
Statistics
Matches: 190, Mismatches: 52, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
49 3 0.02
50 153 0.81
51 33 0.17
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
Found at i:74902012 original size:22 final size:22
Alignment explanation
Indices: 74901987--74902041 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
74901977 GTTGAAAACT
74901987 CACGAGCGTGTCCTTGTGTCCA
1 CACGAGCGTGTCCTTGTGTCCA
74902009 CACGAGCGTGTCCTTGTGTCCA
1 CACGAGCGTGTCCTTGTGTCCA
74902031 CACGAGCGTGT
1 CACGAGCGTGT
74902042 GACCCTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.15, C:0.31, G:0.29, T:0.25
Consensus pattern (22 bp):
CACGAGCGTGTCCTTGTGTCCA
Found at i:74905033 original size:16 final size:15
Alignment explanation
Indices: 74905009--74905038 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
74904999 AACTATTTTA
74905009 TTACAAATTTCACTC
1 TTACAAATTTCACTC
74905024 TTACATAATTTCACT
1 TTACA-AATTTCACT
74905039 TATTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:74906851 original size:39 final size:39
Alignment explanation
Indices: 74906767--74906919 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
74906757 TATGGTAACC
** * *
74906767 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
74906807 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
74906846 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74906885 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
74906920 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:74906893 original size:78 final size:79
Alignment explanation
Indices: 74906736--74906918 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
74906726 TCGTTCAAAC
* * **
74906736 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
74906801 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
74906816 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
74906880 CAATTTGCACAATT
66 CAATTTGCACAATT
74906894 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74906919 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:74914911 original size:38 final size:39
Alignment explanation
Indices: 74914798--74914940 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
74914788 CCGCACAAAG
*
74914798 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
74914838 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
74914877 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
74914915 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
74914941 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:74914919 original size:77 final size:79
Alignment explanation
Indices: 74914758--74914939 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
74914748 TCGTTCAAAC
* * **
74914758 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
74914823 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
74914838 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
74914901 CAATTTGCACAATT
66 CAATTTGCACAATT
74914915 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74914940 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:74916722 original size:51 final size:51
Alignment explanation
Indices: 74916592--74916774 Score: 161
Period size: 51 Copynumber: 3.6 Consensus size: 51
74916582 CTGATACACG
** * *
74916592 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTGTCAGGTACGCA
* * * * * *
74916643 TAGTAGCTTGTAGTTAATACCACACATGTGATCAAAGTTGTTAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTGTCAGGTACGCA
* * * * * * * * * *
74916694 TGGTGGCCTGCACTTAGTACTACGCATGTGACCTAA-CTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTGTCAGGTACGCA
* *
74916744 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
74916775 CTTAAAACCA
Statistics
Matches: 101, Mismatches: 31, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
50 34 0.34
51 67 0.66
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTGTCAGGTACGCA
Found at i:74923600 original size:16 final size:15
Alignment explanation
Indices: 74923576--74923605 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
74923566 AACTATTTTA
74923576 TTACAAATTTCACTC
1 TTACAAATTTCACTC
74923591 TTACATAATTTCACT
1 TTACA-AATTTCACT
74923606 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:74924073 original size:50 final size:50
Alignment explanation
Indices: 74923817--74924143 Score: 246
Period size: 50 Copynumber: 6.5 Consensus size: 50
74923807 CTGGTATGCA
* * * * * * *
74923817 TAGTAGCCTGCACTTAGTACTACATATGCGACC-AACAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTATCAGGTACACG
* * * *
74923866 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACCATCTA-ATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTATC-AGGTACACG
* * * * * * * *
74923916 TAATAACCTACACTTAGTACTACACACGTGATCGAAGTTTCCAGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTAT-CAGGTACACG
* * ** * * * *
74923967 TAGTAGCCTACATTTAGTACTACACACGTGA-TTAGTTGTCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTATCAGGTACACG
* * * * *
74924016 TGGTAGCCTGCACTTAATACTACACATGCGACCTAACTATCAGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTATCAGGTACACG
* **** *
74924066 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCT--AACTATCAGGTACACG
*
74924118 TAGTAGCCTACACATAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
74924144 TGTGTTCTCA
Statistics
Matches: 219, Mismatches: 52, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
49 63 0.29
50 88 0.40
51 33 0.15
52 35 0.16
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTAACTATCAGGTACACG
Found at i:74929327 original size:27 final size:26
Alignment explanation
Indices: 74929297--74929382 Score: 136
Period size: 26 Copynumber: 3.2 Consensus size: 26
74929287 AATCAATCAA
*
74929297 TTTACCTTACAAGGGTATTACAGTCAT
1 TTTACCCTA-AAGGGTATTACAGTCAT
74929324 TTTAACCCTAAAGGGTATTACAGTCAT
1 TTT-ACCCTAAAGGGTATTACAGTCAT
*
74929351 TTTACCCTATAGGGTATTACAGTCAT
1 TTTACCCTAAAGGGTATTACAGTCAT
74929377 TTTACC
1 TTTACC
74929383 TTATAGGGAT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
26 28 0.50
27 23 0.41
28 5 0.09
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (26 bp):
TTTACCCTAAAGGGTATTACAGTCAT
Found at i:74929387 original size:26 final size:26
Alignment explanation
Indices: 74929308--74929560 Score: 217
Period size: 26 Copynumber: 9.6 Consensus size: 26
74929298 TTACCTTACA
* * *
74929308 AGGGTATTACAGTCATTTTAACCCTAA
1 AGGGTATTTCGGTCATTTT-ACCCTAT
* *
74929335 AGGGTATTACAGTCATTTTACCCTAT
1 AGGGTATTTCGGTCATTTTACCCTAT
* * *
74929361 AGGGTATTACAGTCATTTTACCTTAT
1 AGGGTATTTCGGTCATTTTACCCTAT
* * *
74929387 AGGGATATTTTGGTTATTTTACCTTA-
1 AGGG-TATTTCGGTCATTTTACCCTAT
* * *
74929413 AGGGAGTATTTTGGTCATTTGACCCTGT
1 A-GG-GTATTTCGGTCATTTTACCCTAT
* *
74929441 GAGGGTATTTTGGTCGTTTTACCCTAT
1 -AGGGTATTTCGGTCATTTTACCCTAT
*
74929468 GGGGTATTTCGGTCATTTTA-CCTAT
1 AGGGTATTTCGGTCATTTTACCCTAT
*
74929493 AGGGATATTTCGGTCA-TTTACTCTAT
1 AGGG-TATTTCGGTCATTTTACCCTAT
* **
74929519 GGGGGTATTTCAATCA-TTTACCCTAT
1 -AGGGTATTTCGGTCATTTTACCCTAT
74929545 AGGGGTATTTCGGTCA
1 A-GGGTATTTCGGTCA
74929561 CCATTTCGGC
Statistics
Matches: 192, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.06
26 98 0.51
27 78 0.41
28 3 0.02
29 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGGTCATTTTACCCTAT
Found at i:74929528 original size:52 final size:52
Alignment explanation
Indices: 74929309--74929560 Score: 240
Period size: 53 Copynumber: 4.8 Consensus size: 52
74929299 TACCTTACAA
* * * * *
74929309 GGGTATTACAGTCATTTTAACCCTAAAGGGTATTACAGTCATTTTACCCTATA
1 GGGTATTTCAGTCATTTT-ACCCTATAGGGTATTTCGGTCATTTTACCCTATG
* * * * * *
74929362 GGGTATTACAGTCATTTTACCTTATAGGGATATTTTGGTTATTTTACCTTAAG
1 GGGTATTTCAGTCATTTTACCCTATAGGG-TATTTCGGTCATTTTACCCTATG
** * * * *
74929415 GGAGTATTTTGGTCATTTGACCCTGTGAGGGTATTTTGGTCGTTTTACCCTATG
1 GG-GTATTTCAGTCATTTTACCCTAT-AGGGTATTTCGGTCATTTTACCCTATG
* *
74929469 GGGTATTTCGGTCATTTTA-CCTATAGGGATATTTCGGTCA-TTTACTCTATGG
1 GGGTATTTCAGTCATTTTACCCTATAGGG-TATTTCGGTCATTTTACCCTAT-G
*
74929521 GGGTATTTCAATCA-TTTACCCTATAGGGGTATTTCGGTCA
1 GGGTATTTCAGTCATTTTACCCTATA-GGGTATTTCGGTCA
74929561 CCATTTCGGC
Statistics
Matches: 165, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
51 17 0.10
52 52 0.32
53 54 0.33
54 38 0.23
55 4 0.02
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.41
Consensus pattern (52 bp):
GGGTATTTCAGTCATTTTACCCTATAGGGTATTTCGGTCATTTTACCCTATG
Found at i:74936196 original size:23 final size:23
Alignment explanation
Indices: 74936176--74936228 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
74936166 TAGAATAAAC
*
74936176 ATAAAATAAAAATAAAAATAAAA
1 ATAAAACAAAAATAAAAATAAAA
**
74936199 ATAAGGCAAAAATAAAAGATAAAAA
1 ATAAAACAAAAATAAAA-AT-AAAA
74936224 ATAAA
1 ATAAA
74936229 TGGACTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 14 0.58
24 2 0.08
25 8 0.33
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (23 bp):
ATAAAACAAAAATAAAAATAAAA
Found at i:74936215 original size:6 final size:6
Alignment explanation
Indices: 74936169--74936202 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
74936159 AAGTCTTTAG
*
74936169 AATAAA CAT-AA AATAAA AATAAA AATAAA AATAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAA
74936203 GGCAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:74943400 original size:27 final size:28
Alignment explanation
Indices: 74943343--74943412 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
74943333 AAATTTGTAC
**
74943343 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
74943371 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
74943398 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74943413 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:74943421 original size:27 final size:27
Alignment explanation
Indices: 74943343--74943424 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
74943333 AAATTTGTAC
* *
74943343 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
74943371 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
74943398 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
74943425 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:74948813 original size:45 final size:46
Alignment explanation
Indices: 74948747--74948874 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
74948737 TGTAACCCGC
* * *
74948747 CCATAAGCGAACTCAGG-CTCAACTCAACGAGCTCGGGCGTT-GCAT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAGCTCGGACATTCGCAT
74948792 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74948838 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
74948875 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
44 2 0.03
45 35 0.45
46 40 0.52
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:74954416 original size:11 final size:11
Alignment explanation
Indices: 74954396--74954428 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
74954386 GTAATGATAT
*
74954396 AGCACACTTCA
1 AGCACTCTTCA
74954407 AGCACTCTTCA
1 AGCACTCTTCA
74954418 AGCACTCTTCA
1 AGCACTCTTCA
74954429 GGTGTACAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.24
Consensus pattern (11 bp):
AGCACTCTTCA
Found at i:74956693 original size:46 final size:45
Alignment explanation
Indices: 74956643--74956815 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
74956633 TGGTTGAGCA
*
74956643 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
74956689 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
74956734 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
74956782 -CCTGAGCTCGTTGAGTTGTGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74956816 GGGGCAGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 56 0.54
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:74956799 original size:93 final size:93
Alignment explanation
Indices: 74956640--74956810 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
74956630 GGATGGTTGA
* *
74956640 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
74956705 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
74956733 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
* *
74956797 TTGTGTCTGAGTTC
65 TTGAGTCCGAGTTC
74956811 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:74962311 original size:26 final size:26
Alignment explanation
Indices: 74962275--74962330 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
74962265 TGAAATTCCA
74962275 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74962301 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74962327 ATCA
1 ATCA
74962331 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74968627 original size:26 final size:26
Alignment explanation
Indices: 74968591--74968646 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
74968581 TGAAATTCCA
74968591 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
74968617 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
74968643 ATCA
1 ATCA
74968647 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:74970059 original size:19 final size:19
Alignment explanation
Indices: 74970035--74970132 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
74970025 AATCTTTAAG
74970035 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74970054 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74970073 GATA--CAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
74970090 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74970109 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
74970130 GAT
1 GAT
74970133 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
21 9 0.13
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74970065 original size:36 final size:35
Alignment explanation
Indices: 74970025--74970132 Score: 94
Period size: 36 Copynumber: 2.9 Consensus size: 35
74970015 ATGGAAATAT
74970025 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
* *
74970061 AATC-TT-AGATATGATACAATCTTATATATAATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
74970097 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
74970133 CTTGTAATCT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
33 6 0.11
34 1 0.02
35 2 0.04
36 26 0.46
37 1 0.02
38 7 0.12
40 8 0.14
41 6 0.11
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:74972789 original size:12 final size:13
Alignment explanation
Indices: 74972761--74972803 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
74972751 GAGCTCCACA
74972761 TATTTTGTATAAC
1 TATTTTGTATAAC
*
74972774 TATTTT-TATTAC
1 TATTTTGTATAAC
74972786 TATTTTCAGTATAAC
1 TATTTT--GTATAAC
74972801 TAT
1 TAT
74972804 GATGATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 11 0.44
13 6 0.24
15 8 0.32
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (13 bp):
TATTTTGTATAAC
Found at i:74973050 original size:27 final size:27
Alignment explanation
Indices: 74973020--74973118 Score: 171
Period size: 27 Copynumber: 3.7 Consensus size: 27
74973010 TTTAGATCTC
*
74973020 CCCAATTCCCAGAGGGTTGTGGGTAAT
1 CCCAATTCCCAGAGGGTCGTGGGTAAT
*
74973047 CCCAATTCCCAGAGGGTCGTGGGTAGT
1 CCCAATTCCCAGAGGGTCGTGGGTAAT
*
74973074 CCCAATTCCCAGAGGGTCGTGGGCAAT
1 CCCAATTCCCAGAGGGTCGTGGGTAAT
74973101 CCCAATTCCCAGAGGGTC
1 CCCAATTCCCAGAGGGTC
74973119 ATAGACTACT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (27 bp):
CCCAATTCCCAGAGGGTCGTGGGTAAT
Found at i:74974810 original size:30 final size:30
Alignment explanation
Indices: 74974737--74974810 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 30
74974727 CATGGTCTGT
*
74974737 CACACAAGCGTGTGACAAGCACGGCCTAGC
1 CACACAGGCGTGTGACAAGCACGGCCTAGC
* * * * *
74974767 CACACAGGTGTGTGATACGCATGGTCTAGC
1 CACACAGGCGTGTGACAAGCACGGCCTAGC
* *
74974797 CACTCGGGCGTGTG
1 CACACAGGCGTGTG
74974811 TCTTGTTAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (30 bp):
CACACAGGCGTGTGACAAGCACGGCCTAGC
Found at i:74976369 original size:20 final size:21
Alignment explanation
Indices: 74976327--74976369 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74976317 CCCACCCTAA
*
74976327 ATAAAAATACAGAATACATAT
1 ATAAAAATACAGAATACAAAT
74976348 ATAAAAATAACAG-A-ACAAAT
1 ATAAAAAT-ACAGAATACAAAT
74976368 AT
1 AT
74976370 GTTTAACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (21 bp):
ATAAAAATACAGAATACAAAT
Found at i:74976369 original size:22 final size:21
Alignment explanation
Indices: 74976327--74976369 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
74976317 CCCACCCTAA
* *
74976327 ATAAAAATACAGAATACATAT
1 ATAAAAATACAGAACAAATAT
74976348 ATAAAAATAACAGAACAAATAT
1 ATAAAAAT-ACAGAACAAATAT
74976370 GTTTAACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (21 bp):
ATAAAAATACAGAACAAATAT
Found at i:74979087 original size:17 final size:17
Alignment explanation
Indices: 74979065--74979100 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
74979055 TAATGCTGAG
74979065 TTAGTCAAATCAGGAAC
1 TTAGTCAAATCAGGAAC
74979082 TTAGTCAAATCAGGAAC
1 TTAGTCAAATCAGGAAC
74979099 TT
1 TT
74979101 TAAAATCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (17 bp):
TTAGTCAAATCAGGAAC
Found at i:74992840 original size:21 final size:21
Alignment explanation
Indices: 74992801--74992841 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74992791 TTATTCAATA
* *
74992801 AAAATTATAAAAACTAAAATT
1 AAAATAATAAAAACGAAAATT
*
74992822 AAAATAATAAAAAGGAAAAT
1 AAAATAATAAAAACGAAAAT
74992842 GAAATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (21 bp):
AAAATAATAAAAACGAAAATT
Found at i:75001103 original size:13 final size:13
Alignment explanation
Indices: 75001085--75001111 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75001075 CAAGCCTATT
75001085 TTAGCACTATAAA
1 TTAGCACTATAAA
75001098 TTAGCACTATAAA
1 TTAGCACTATAAA
75001111 T
1 T
75001112 AGGTGAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (13 bp):
TTAGCACTATAAA
Found at i:75008954 original size:19 final size:22
Alignment explanation
Indices: 75008915--75008954 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
75008905 AGAAACCCAA
75008915 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
75008937 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
75008955 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:75009054 original size:27 final size:28
Alignment explanation
Indices: 75009023--75009128 Score: 139
Period size: 27 Copynumber: 3.9 Consensus size: 28
75009013 CTGCCAGAAT
* *
75009023 AGATA-ATGTGACAGAGTCACCAGATAC
1 AGATATATGTGGCAGAGCCACCAGATAC
75009050 AGATA-ATCGTGGCAGAGCCACCAGA-AC
1 AGATATAT-GTGGCAGAGCCACCAGATAC
*
75009077 AGATATTTGTGGCAGAGCCACCAGAT-C
1 AGATATATGTGGCAGAGCCACCAGATAC
*
75009104 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATATGTGGCAGAGCCACCAGA
75009129 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
27 57 0.78
28 16 0.22
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (28 bp):
AGATATATGTGGCAGAGCCACCAGATAC
Found at i:75009081 original size:54 final size:54
Alignment explanation
Indices: 75009016--75009130 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
75009006 AACATGGCTG
* *
75009016 CCAGAATAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
75009070 CCAGAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
75009124 CCAGAAC
1 CCAGAAC
75009131 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:75010783 original size:26 final size:26
Alignment explanation
Indices: 75010747--75010856 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
75010737 CATGAAATTC
75010747 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
75010773 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
75010799 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
75010825 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
75010851 TTATCA
1 TTATCA
75010857 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:75014763 original size:19 final size:22
Alignment explanation
Indices: 75014724--75014763 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
75014714 AGAAACCCAA
75014724 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
75014746 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
75014764 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:75014862 original size:27 final size:28
Alignment explanation
Indices: 75014825--75014964 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
75014815 AGCATGGCTG
* *
75014825 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
75014851 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
75014879 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
75014906 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
75014933 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
75014960 CCAGA
1 CCAGA
75014965 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:75016618 original size:26 final size:26
Alignment explanation
Indices: 75016582--75016691 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
75016572 CATGAAATTC
75016582 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
75016608 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
75016634 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
75016660 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
75016686 TTATCA
1 TTATCA
75016692 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:75017865 original size:28 final size:29
Alignment explanation
Indices: 75017805--75017870 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
75017795 AATCCTCCTT
**
75017805 TTTTCTATTTATTCTTATTCTTATTTTTC
1 TTTTCTATTTATTCTTATTCTTATTTTGA
* * *
75017834 TTTTCT-TTTATTTTTATTTTTCTTTTGA
1 TTTTCTATTTATTCTTATTCTTATTTTGA
75017862 TTTT-TATTT
1 TTTTCTATTT
75017871 TCATTTCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.77
29 6 0.19
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTCTATTTATTCTTATTCTTATTTTGA
Found at i:75017866 original size:7 final size:6
Alignment explanation
Indices: 75017812--75017876 Score: 53
Period size: 6 Copynumber: 11.2 Consensus size: 6
75017802 CTTTTTTCTA
* * * * *
75017812 TTTATT CTTATT CTTATT TTT-CT TTT-CT TTTATT TTTATT TTTCTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
75017858 TTGATT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT T
75017877 CAATTTTATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:75017866 original size:18 final size:17
Alignment explanation
Indices: 75017825--75017871 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 17
75017815 ATTCTTATTC
*
75017825 TTATTTTT-CTTTTCTT
1 TTATTTTTATTTTTCTT
75017841 TTATTTTTATTTTTCTT
1 TTATTTTTATTTTTCTT
75017858 TTGATTTTTATTTT
1 TT-ATTTTTATTTT
75017872 CATTTCAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 8 0.29
17 9 0.32
18 11 0.39
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (17 bp):
TTATTTTTATTTTTCTT
Found at i:75017872 original size:17 final size:16
Alignment explanation
Indices: 75017825--75017886 Score: 70
Period size: 17 Copynumber: 3.7 Consensus size: 16
75017815 ATTCTTATTC
*
75017825 TTATTTTTCTTTTCTT
1 TTATTTTTATTTTCTT
75017841 TTATTTTTATTTTTCTT
1 TTATTTTTA-TTTTCTT
75017858 TTGATTTTTATTTTCATT
1 TT-ATTTTTATTTTC-TT
* *
75017876 TCAATTTTATT
1 TTATTTTTATT
75017887 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
16 8 0.20
17 22 0.55
18 10 0.25
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.76
Consensus pattern (16 bp):
TTATTTTTATTTTCTT
Done.