Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 253 of 378
Found at i:75713992 original size:578 final size:578
Alignment explanation
Indices: 75712897--75714052 Score: 2195
Period size: 578 Copynumber: 2.0 Consensus size: 578
75712887 TTGATCCCGA
*
75712897 TTTTCGTGTGACAAGTTTTAAATATTTATAAAGAATCGTTCTTGAAACTAACTATTATCACGATG
1 TTTTCGTGTGACAAGTTTTAAATATTTATAAAGAATAGTTCTTGAAACTAACTATTATCACGATG
75712962 TAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACTAGATTGTCGAACCCAAAGGA
66 TAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACTAGATTGTCGAACCCAAAGGA
75713027 ACTAAAAGTACTAGTAATGACTGTCCTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTTGTTTT
131 ACTAAAAGTACTAGTAATGACTGTCCTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTTGTTTT
*
75713092 AACTGACTAATTATCTAAACTAAGAATTCGTAGAAAGTAGAATTGGGGGATTACTTTTGGAAAAA
196 AACTAACTAATTATCTAAACTAAGAATTCGTAGAAAGTAGAATTGGGGGATTACTTTTGGAAAAA
*
75713157 GATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACATTACTTGTTATTCTGGCTCCGAA
261 GATTGAATTAAGACAATACCTAAAGAAAAATCCACCTAGACATTACTTGTTATTCTGGCTCCGAA
* *
75713222 TCGGATGATTTATTCATTTAACTTGTCCTGTAGAGATCTCTAAGTTATGTTATTATCCCTATTCA
326 TCGGACGATTTATTCATTTAACTTGTCCTGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
75713287 GGACTAATAACATCTAATCCCTAGATTAAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGT
391 GGACTAATAACATCTAATCCCTAGATTAAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGT
75713352 TGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGGAAAAATCTTGTCACC
456 TGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGGAAAAATCTTGTCACC
*
75713417 CTATGTCTAGGCGCGCAATCAACTCTGTTTAATTATGACAAGTGTACTCTTAGACAGG
521 CTATATCTAGGCGCGCAATCAACTCTGTTTAATTATGACAAGTGTACTCTTAGACAGG
*
75713475 TTTTCGTGTGACAGGTTTTAAATATTTATAAAGAATAGTTCTTGAAACTAACTATTATCACGATG
1 TTTTCGTGTGACAAGTTTTAAATATTTATAAAGAATAGTTCTTGAAACTAACTATTATCACGATG
75713540 TAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACTAGATTGTCGAACCCAAAGGA
66 TAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACTAGATTGTCGAACCCAAAGGA
*
75713605 ACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTTGTTTT
131 ACTAAAAGTACTAGTAATGACTGTCCTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTTGTTTT
75713670 AACTAACTAATTATCTAAACTAAGAATTCGTAGAAAGTAGAATTGGGGGATTACTTTTGGAAAAA
196 AACTAACTAATTATCTAAACTAAGAATTCGTAGAAAGTAGAATTGGGGGATTACTTTTGGAAAAA
*
75713735 GATTGAATTAAGACAATACCTAAAGAAAAATCCACCTAGGCATTACTTGTTATTCTGGCTCCGAA
261 GATTGAATTAAGACAATACCTAAAGAAAAATCCACCTAGACATTACTTGTTATTCTGGCTCCGAA
75713800 TCGGACGATTTATTCATTTAACTTGTCCTGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
326 TCGGACGATTTATTCATTTAACTTGTCCTGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
75713865 GGACTAATAACATCTAATCCCTAGATTAAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGT
391 GGACTAATAACATCTAATCCCTAGATTAAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGT
* *
75713930 TGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATTCGGCAAAATCTTGTCACC
456 TGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGGAAAAATCTTGTCACC
* *
75713995 CTATATTTAGGCGCGTAATCAACTCTGTTTAATTATGACAAGTGTACTCTTAGACAGG
521 CTATATCTAGGCGCGCAATCAACTCTGTTTAATTATGACAAGTGTACTCTTAGACAGG
75714053 GTCTATTCCT
Statistics
Matches: 565, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
578 565 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (578 bp):
TTTTCGTGTGACAAGTTTTAAATATTTATAAAGAATAGTTCTTGAAACTAACTATTATCACGATG
TAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACTAGATTGTCGAACCCAAAGGA
ACTAAAAGTACTAGTAATGACTGTCCTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTTGTTTT
AACTAACTAATTATCTAAACTAAGAATTCGTAGAAAGTAGAATTGGGGGATTACTTTTGGAAAAA
GATTGAATTAAGACAATACCTAAAGAAAAATCCACCTAGACATTACTTGTTATTCTGGCTCCGAA
TCGGACGATTTATTCATTTAACTTGTCCTGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
GGACTAATAACATCTAATCCCTAGATTAAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGT
TGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGGAAAAATCTTGTCACC
CTATATCTAGGCGCGCAATCAACTCTGTTTAATTATGACAAGTGTACTCTTAGACAGG
Found at i:75719261 original size:28 final size:29
Alignment explanation
Indices: 75719229--75719291 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
75719219 TATATTCTAA
* *
75719229 ATTTTTATATTTGA-AATTTAATGATTAT
1 ATTTTTATATTTAAGAATTTAATCATTAT
* * *
75719257 ATTTTTATTTTTAAGAATTTAGTCATTTT
1 ATTTTTATATTTAAGAATTTAATCATTAT
75719286 ATTTTT
1 ATTTTT
75719292 TAGATTTAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (29 bp):
ATTTTTATATTTAAGAATTTAATCATTAT
Found at i:75719298 original size:22 final size:23
Alignment explanation
Indices: 75719259--75719301 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
75719249 ATGATTATAT
75719259 TTTTATTTTTAAGAATTTAGTCA
1 TTTTATTTTTAAGAATTTAGTCA
*
75719282 TTTTATTTTTTAG-ATTTAGT
1 TTTTATTTTTAAGAATTTAGT
75719302 TATTAACACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (23 bp):
TTTTATTTTTAAGAATTTAGTCA
Found at i:75722045 original size:12 final size:12
Alignment explanation
Indices: 75722024--75722053 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
75722014 TTCTTTCACA
*
75722024 ATATTTATTTTC
1 ATATTCATTTTC
75722036 ATATTCATTTTC
1 ATATTCATTTTC
75722048 ATATTC
1 ATATTC
75722054 TTAGTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTCATTTTC
Found at i:75727039 original size:17 final size:16
Alignment explanation
Indices: 75727012--75727054 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
75727002 TTGAGACTTT
75727012 AAAAAAA-AAAAAAGA
1 AAAAAAAGAAAAAAGA
*
75727027 AATAAAAAGAAAAAATA
1 AA-AAAAAGAAAAAAGA
75727044 AAAAAGAAGAA
1 AAAAA-AAGAA
75727055 TCAATCAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 8 0.33
17 14 0.58
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (16 bp):
AAAAAAAGAAAAAAGA
Found at i:75727047 original size:14 final size:14
Alignment explanation
Indices: 75727012--75727051 Score: 50
Period size: 12 Copynumber: 3.1 Consensus size: 14
75727002 TTGAGACTTT
75727012 AAAAA-AAAAAA-A
1 AAAAATAAAAAAGA
*
75727024 AGAAAT-AAAAAGA
1 AAAAATAAAAAAGA
75727037 AAAAATAAAAAAGA
1 AAAAATAAAAAAGA
75727051 A
1 A
75727052 GAATCAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 9 0.39
13 6 0.26
14 8 0.35
ACGTcount: A:0.88, C:0.00, G:0.07, T:0.05
Consensus pattern (14 bp):
AAAAATAAAAAAGA
Found at i:75728214 original size:64 final size:64
Alignment explanation
Indices: 75728145--75728528 Score: 669
Period size: 64 Copynumber: 6.0 Consensus size: 64
75728135 TCATTCATAA
*
75728145 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGTAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
*
75728209 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* *
75728273 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAACAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* *
75728337 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTTATATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
*
75728401 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
75728465 CACATCTAGTTAGGAGCATTTGATTCGTTTTGATCATAACATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
75728529 GATACATGAA
Statistics
Matches: 305, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 305 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:75729056 original size:43 final size:43
Alignment explanation
Indices: 75728992--75729092 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
75728982 GCCTCAAGCC
* **
75728992 TTATCTCTCTAAGGTAACAAGAGAGCAGGTTGAAGATTGAGTT
1 TTATCTCTCTAAGGTAACAAGAAAGCAGACTGAAGATTGAGTT
* * * *
75729035 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATC
1 TTATCTCTCTAAGGTAACAAGAAAGCAGACTGAAGATTG-AG-TT
*
75729080 TTATCTCCCTAAG
1 TTATCTCTCTAAG
75729093 CAGTAGCGGA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
43 33 0.72
44 2 0.04
45 11 0.24
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (43 bp):
TTATCTCTCTAAGGTAACAAGAAAGCAGACTGAAGATTGAGTT
Found at i:75729267 original size:176 final size:174
Alignment explanation
Indices: 75728944--75729343 Score: 505
Period size: 176 Copynumber: 2.3 Consensus size: 174
75728934 GGAAGAGGCA
* * * * * *
75728944 AATCTTATCTCTATGTATCGACAATGGAGTAGATTTAAGCCTCAAGCCTTATCTCTCTAAGGTAA
1 AATCTTATCTCCATATATTGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTAAGGTAA
* *
75729009 CAAGAGAGCAGGTTGAAGATTGAGTTTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
66 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
75729074 AAGATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGAACATGGAG
131 AAGATCTTATCTCCCTAAGCAGTAGCGGAAC--ATCGAACATGGAG
* * * * * * *
75729120 AGTCTTATCTCCATATCTTGGTAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATATATTGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTAAGGTAA
** * *
75729185 CAAGAGAGCAGGTTGGCGATTGCAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGGATT
66 CAAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATT
* * * * ** *
75729250 GAAGATC-TATTTCCCTAAGCAGTTGTGGAGCATCGAGGATGGTG
130 GAAGATCTTATCTCCCTAAGCAGTAGCGGAACATCGAACATGGAG
* *
75729294 AATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCACCAAGCCT
1 AATCTTATCTCCATATATTGGCAATGGAGCAGATTTAAGCCA-CAAGCCT
75729344 ATTTCCCTAA
Statistics
Matches: 189, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
174 46 0.24
175 6 0.03
176 92 0.49
177 45 0.24
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (174 bp):
AATCTTATCTCCATATATTGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTAAGGTAA
CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
AAGATCTTATCTCCCTAAGCAGTAGCGGAACATCGAACATGGAG
Found at i:75732284 original size:29 final size:29
Alignment explanation
Indices: 75732251--75732352 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
75732241 GATTAAAGAA
75732251 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * * **
75732280 CTCGCACAAATAATG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
75732308 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
75732337 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
75732353 TCGGTTGAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:75732307 original size:57 final size:57
Alignment explanation
Indices: 75732241--75732384 Score: 198
Period size: 57 Copynumber: 2.5 Consensus size: 57
75732231 CATAGCGCTT
* *
75732241 GATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTCGCACAAATAATGCTC
1 GATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGCACAAATAATGCTC
** * * *
75732298 GATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTC
1 GATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGCACAAATAATGCTC
* * *
75732355 GGTTGAAGAACTTGCACACACAGTGCCTCA
1 GATTGAAGAACTCGCACACATAGTGCCTCA
75732385 TAACTCCAGC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 77 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (57 bp):
GATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGCACAAATAATGCTC
Found at i:75732457 original size:40 final size:40
Alignment explanation
Indices: 75732412--75732742 Score: 556
Period size: 40 Copynumber: 8.3 Consensus size: 40
75732402 CCTTCGAGGT
* * *
75732412 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
75732452 TTAGCCCGGAAACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
75732492 TTAGCCCGGATACATTACTAGCAC-AATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
75732531 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
75732571 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
* * *
75732611 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
75732651 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
* *
75732691 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
75732731 TTAGCCCGGATA
1 TTAGCCCGGATA
75732743 TATATAACTC
Statistics
Matches: 275, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 39 0.14
40 236 0.86
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:75734082 original size:37 final size:37
Alignment explanation
Indices: 75734029--75734168 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
75734019 CGAATAGTCC
* *
75734029 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
75734066 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
75734103 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
75734140 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
75734169 ATATATTTCC
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:75734367 original size:48 final size:48
Alignment explanation
Indices: 75734294--75734694 Score: 694
Period size: 48 Copynumber: 8.3 Consensus size: 48
75734284 GGTCATTCGG
*
75734294 CCACAATATACACTCATCTCCTACATATTTCACACTAGCCATTCGGCTTTA
1 CCAC-ATATACA-T-ATCTCATACATATTTCACACTAGCCATTCGGCTTTA
75734345 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
75734393 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
75734441 CCAGATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
75734489 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
75734537 CTACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
75734585 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
75734633 CCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
75734681 CCACACATATATAT
1 CCACATATACATAT
75734695 ATATTTATCT
Statistics
Matches: 338, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
48 326 0.96
49 1 0.00
50 7 0.02
51 4 0.01
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
Found at i:75738254 original size:28 final size:28
Alignment explanation
Indices: 75738223--75738384 Score: 114
Period size: 28 Copynumber: 5.7 Consensus size: 28
75738213 CTGACTGATT
*
75738223 TCGCACACATAGCG-CTCGATTAAAGAAC
1 TCGCACACATAGTGCCTC-ATTAAAGAAC
* * *
75738251 TCGCACACATAGTGCCCCAATTACCA-ATC
1 TCGCACACATAGTGCCTC-ATTA-AAGAAC
* *
75738280 TCGCACACATAGTGCCTCATTGAAGAAT
1 TCGCACACATAGTGCCTCATTAAAGAAC
* ** *
75738308 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTC-ATTAAAGAAC
* * *
75738337 TGGCACACATAGTG-CTCGGTTGAAGAAC
1 TCGCACACATAGTGCCTC-ATTAAAGAAC
* * *
75738365 TTGCATACACAGTGCCTCAT
1 TCGCACACATAGTGCCTCAT
75738385 AACTCCAGCA
Statistics
Matches: 101, Mismatches: 28, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
27 1 0.01
28 54 0.53
29 45 0.45
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCCTCATTAAAGAAC
Found at i:75738283 original size:29 final size:29
Alignment explanation
Indices: 75738250--75738351 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
75738240 GATTAAAGAA
*
75738250 CTCGCACACATAGTGCCCCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
**
75738279 CTCGCACACATAGTGCCTC-ATTGAAGAAT
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
75738308 -TCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
75738336 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
75738352 TCGGTTGAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
28 24 0.39
29 38 0.61
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:75738381 original size:57 final size:58
Alignment explanation
Indices: 75738192--75738383 Score: 207
Period size: 57 Copynumber: 3.4 Consensus size: 58
75738182 CATGAAACAT
* * * *
75738192 ACTTCGCATACACAGTGCC-C-ACTGACTGATTTCGCACACATAGCGCTCGATTAAAGA
1 ACTTCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGTGCTCGATTGAAGA
* * * **
75738249 AC-TCGCACACATAGTGCCCCAATTACCAATCTCGCACACATAGTGCCTC-ATTGAAGA
1 ACTTCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTG-CTCGATTGAAGA
* * *
75738306 A-TTCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGAAGA
1 ACTTCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTGAAGA
*
75738363 ACTT-GCATACACAGTGCCTCA
1 ACTTCGCACACACAGTGCCTCA
75738384 TAACTCCAGC
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
56 17 0.15
57 89 0.79
58 7 0.06
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (58 bp):
ACTTCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTGAAGA
Found at i:75738455 original size:40 final size:40
Alignment explanation
Indices: 75738411--75738662 Score: 405
Period size: 40 Copynumber: 6.3 Consensus size: 40
75738401 CCTTCGAGGT
* *
75738411 TTAGCTCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
75738451 TTAGCCCGGATACATTACTAGCATGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
75738491 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
75738531 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * * *
75738571 TTAGCCCGGATACATTACTAGCACGGATGTTCTTCAGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
75738611 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
75738651 TTAGCCTGGATA
1 TTAGCCCGGATA
75738663 TATATAACTC
Statistics
Matches: 196, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 196 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:75739976 original size:37 final size:37
Alignment explanation
Indices: 75739920--75740059 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
75739910 CGAATAGTCC
* * * * *
75739920 CCACACGTAGTTATAGGGTCTTACTCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
75739957 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
75739994 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
75740031 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
75740060 ATATATTTCC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:75740261 original size:48 final size:48
Alignment explanation
Indices: 75740200--75740729 Score: 952
Period size: 48 Copynumber: 11.0 Consensus size: 48
75740190 ATATACACAC
*
75740200 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
75740248 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75740296 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75740344 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
75740392 ATCTCATACATATTTCACACTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75740440 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75740488 ATCTCATACATATTTCACATTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75740536 ATCTCATACATATTTCACATTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75740584 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75740632 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
75740680 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75740728 AT
1 AT
75740730 ATTTATCTTG
Statistics
Matches: 468, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 468 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:75745237 original size:23 final size:23
Alignment explanation
Indices: 75745211--75745266 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
75745201 TTGTAGTAAT
* *
75745211 AGTAGAATGGCTTTAGTAGCAAC
1 AGTAGAATGACTTTACTAGCAAC
*
75745234 AGTATGGCATGACTTTACTAGCAAC
1 AGTA--GAATGACTTTACTAGCAAC
*
75745259 AGTGGAAT
1 AGTAGAAT
75745267 TCATAGCTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
23 7 0.27
25 19 0.73
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (23 bp):
AGTAGAATGACTTTACTAGCAAC
Found at i:75746033 original size:34 final size:34
Alignment explanation
Indices: 75745912--75746034 Score: 90
Period size: 34 Copynumber: 3.6 Consensus size: 34
75745902 TTTTGATCTG
** * * **
75745912 ATATGACATTC-TGATAAATATATATTTCTAAAA
1 ATATGACATTCTTGATTGATATATGTTTATGGAA
* *
75745945 ATATGACACT-TTGATTTGGTATATGTTTATGGAA
1 ATATGACATTCTTGA-TTGATATATGTTTATGGAA
* * *
75745979 ATATGACATTCTTGCTTGATATATGTTTCTGGTA
1 ATATGACATTCTTGATTGATATATGTTTATGGAA
* *
75746013 ATGTGATATTC-TGATATGATAT
1 ATATGACATTCTTGAT-TGATAT
75746035 TCGTATATGT
Statistics
Matches: 70, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
33 15 0.21
34 52 0.74
35 3 0.04
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (34 bp):
ATATGACATTCTTGATTGATATATGTTTATGGAA
Found at i:75755429 original size:40 final size:40
Alignment explanation
Indices: 75755380--75755531 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
75755370 ACAACCACAA
* * *** *
75755380 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
75755420 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
75755460 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
75755500 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
75755532 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:75765115 original size:39 final size:40
Alignment explanation
Indices: 75764958--75765124 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
75764948 CGGGATTTAA
* * * * *
75764958 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *** * * *
75764998 CCGGATTTGGTAACTTGCACCATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
75765038 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75765078 CCGGCATA-ATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGG-ATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
75765117 CCGGATAT
1 CCGGATAT
75765125 CATTCAAATG
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
38 3 0.03
39 28 0.27
40 69 0.67
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75766940 original size:16 final size:16
Alignment explanation
Indices: 75766921--75766952 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75766911 AATTGTTTTA
75766921 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
75766937 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
75766953 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:75774414 original size:34 final size:34
Alignment explanation
Indices: 75774371--75774439 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
75774361 CTAATGGCCG
*
75774371 ATGTGATGAATCTGAAAGTGTGTATATATGTGAT
1 ATGTGATGAATCTGAAAGTGTATATATATGTGAT
*
75774405 ATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 ATGTGATGAATCTGAAAGTGTATATATATGTGAT
75774439 A
1 A
75774440 AGGCCTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.35, C:0.01, G:0.26, T:0.38
Consensus pattern (34 bp):
ATGTGATGAATCTGAAAGTGTATATATATGTGAT
Found at i:75774477 original size:49 final size:47
Alignment explanation
Indices: 75774405--75774582 Score: 257
Period size: 47 Copynumber: 3.7 Consensus size: 47
75774395 TATATGTGAT
* *
75774405 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
*
75774454 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
75774501 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
75774548 ACGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75774583 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 99 0.84
49 19 0.16
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:75776451 original size:40 final size:40
Alignment explanation
Indices: 75776396--75776605 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75776386 AACATTGGAA
75776396 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75776436 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75776476 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75776516 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75776555 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75776596 CTATATCCGG
1 ATATATCCGG
75776606 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75783387 original size:49 final size:49
Alignment explanation
Indices: 75783332--75784425 Score: 1924
Period size: 49 Copynumber: 22.4 Consensus size: 49
75783322 TATTAAAATT
* * *
75783332 TGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75783381 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGCCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75783430 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75783479 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783528 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783577 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783626 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783675 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783724 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75783773 TGTGAAAGTGTGAATATATGTTATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75783822 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75783871 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75783920 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75783969 TGTGAAAGTGTGAATATATGT-ATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75784017 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75784066 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75784114 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75784163 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG-A
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75784211 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75784260 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75784309 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75784358 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75784407 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
75784426 ATGTGGTAAA
Statistics
Matches: 995, Mismatches: 47, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
48 135 0.14
49 860 0.86
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:75783891 original size:27 final size:27
Alignment explanation
Indices: 75783861--75783943 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 27
75783851 CTAATGGCCG
75783861 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** **
75783888 ATGTGAT-AAGGCCTAA-TG-G-CCA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
75783910 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
75783937 ATGTGAT
1 ATGTGAT
75783944 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
22 7 0.18
23 6 0.15
24 3 0.08
25 3 0.08
26 6 0.15
27 14 0.36
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:75786476 original size:40 final size:40
Alignment explanation
Indices: 75786428--75786748 Score: 561
Period size: 40 Copynumber: 8.0 Consensus size: 40
75786418 GAGAGTGATA
*
75786428 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
*
75786468 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
75786508 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
75786548 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
75786588 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
75786628 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
*
75786668 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
* * * * * *
75786708 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
75786748 T
1 T
75786749 GTATTCGGGC
Statistics
Matches: 272, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 272 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
Found at i:75790495 original size:49 final size:49
Alignment explanation
Indices: 75790388--75791433 Score: 1817
Period size: 49 Copynumber: 21.4 Consensus size: 49
75790378 TATTAAAATT
* *
75790388 TGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75790436 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGCCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75790485 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75790534 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75790583 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75790632 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75790681 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75790730 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75790779 TGTGAAAGTGTGAATATATGTTATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75790828 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75790877 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75790926 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75790975 TGTGAAAGTGTGAATATATGTTATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75791024 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791073 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75791122 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791171 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG-A
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
75791219 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791268 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791317 TGTGAAAGTTTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791366 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
75791415 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
75791434 ATGTGGTAAA
Statistics
Matches: 944, Mismatches: 52, Indels: 3
0.94 0.05 0.00
Matches are distributed among these distances:
48 74 0.08
49 870 0.92
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:75790897 original size:27 final size:27
Alignment explanation
Indices: 75790867--75790949 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 27
75790857 CTAATGGCCG
75790867 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** **
75790894 ATGTGAT-AAGGCCTAA-TG-G-CCA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
75790916 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
75790943 ATGTGAT
1 ATGTGAT
75790950 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
22 7 0.18
23 6 0.15
24 3 0.08
25 3 0.08
26 6 0.15
27 14 0.36
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:75796457 original size:40 final size:40
Alignment explanation
Indices: 75796402--75796611 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75796392 AACATTGGAA
75796402 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75796442 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75796482 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75796522 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75796561 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75796602 CTATATCCGG
1 ATATATCCGG
75796612 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75800115 original size:40 final size:40
Alignment explanation
Indices: 75800039--75800308 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
75800029 GAGAATTGAG
* * * *
75800039 AGTGATATATCCGGGCTAA-ATCCCAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75800078 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75800118 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75800158 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75800198 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
75800238 AGTAATGCAACCGGACTAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
75800277 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
75800309 ATCATGCTGT
Statistics
Matches: 212, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 50 0.24
40 162 0.76
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:75804461 original size:49 final size:48
Alignment explanation
Indices: 75804401--75804653 Score: 370
Period size: 49 Copynumber: 5.3 Consensus size: 48
75804391 GTATGAGATA
75804401 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
75804450 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
75804499 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGG-G
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
75804545 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
75804592 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
*
75804639 TATAAATGTGATAAG
1 TATATATGTGATAAG
75804654 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 41 0.21
47 59 0.31
48 3 0.02
49 90 0.47
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:75807768 original size:50 final size:50
Alignment explanation
Indices: 75807703--75807938 Score: 231
Period size: 50 Copynumber: 4.7 Consensus size: 50
75807693 ACCGAAGCTC
* * * *
75807703 TCTGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * ** * *
75807753 TCTGGTACACGTAGTAGCCTGTACTTAGTACTACATACGTGATTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * * * ** *
75807803 TTTGATACATGTAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAA
** * *
75807855 -CTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
*
75807904 TCTGGTACACGTAGTAGCTTGCACTTAGTACTACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
75807939 AACGTGACTC
Statistics
Matches: 146, Mismatches: 37, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 3 0.02
50 109 0.75
51 33 0.23
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
Found at i:75807888 original size:101 final size:101
Alignment explanation
Indices: 75807764--75807945 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
75807754 CTGGTACACG
* * * ** * * *
75807764 TAGTAGCCTGTACTTAGTACTACATACGTGATTTAACCATTTGATACATGTAGTAGCTTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCTTGCACTT
*
75807829 AGTACTACACACGTGATCGAAGTTAACTGGTATGCA
66 AGTACTACAAACGTGATCGAAGTTAACTGGTATGCA
* * *
75807865 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCTTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCTTGCACTT
75807930 AGTACTACAAACGTGA
66 AGTACTACAAACGTGA
75807946 CTCACAATGG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCTTGCACTT
AGTACTACAAACGTGATCGAAGTTAACTGGTATGCA
Found at i:75808323 original size:19 final size:20
Alignment explanation
Indices: 75808295--75808341 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
75808285 AAGAACATGT
75808295 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
75808316 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
75808335 TATATAT
1 TATATAT
75808342 AATTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:75809483 original size:23 final size:23
Alignment explanation
Indices: 75809453--75809498 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75809443 GTAGGGCTTT
75809453 CTACAACTTTCTCGAGAATTTAA
1 CTACAACTTTCTCGAGAATTTAA
*
75809476 CTACAACTTTTTCGAGAATTTAA
1 CTACAACTTTCTCGAGAATTTAA
75809499 GTTGATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (23 bp):
CTACAACTTTCTCGAGAATTTAA
Found at i:75813791 original size:47 final size:47
Alignment explanation
Indices: 75813732--75814122 Score: 590
Period size: 47 Copynumber: 8.4 Consensus size: 47
75813722 GATGTACAAG
* *
75813732 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75813779 GTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
75813825 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
75813871 GTGTATATATGTGATAAGGCC-GATGGCTAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
75813917 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
75813964 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
75814011 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
75814058 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75814105 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
75814123 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 12 0.04
46 101 0.32
47 202 0.64
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:75815486 original size:40 final size:40
Alignment explanation
Indices: 75815432--75815589 Score: 271
Period size: 40 Copynumber: 4.0 Consensus size: 40
75815422 CGGATGTAAC
* *
75815432 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75815472 AACCCGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75815512 AACCCACACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75815552 AACCCGCACGAATGCCTTCGGGACTTAACCTGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
75815590 TATATTTTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:75819576 original size:543 final size:539
Alignment explanation
Indices: 75817061--75820526 Score: 4371
Period size: 540 Copynumber: 6.4 Consensus size: 539
75817051 GGCTGTCACA
* ** *
75817061 TTGATCGTATTATCTTTCAGATTGTAGAATAATTCACCCTTTT-TTCCTTTCGAATATCCTACTA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCA-CCTTTTGTTCCTTTCGAATATCCTACAA
* * * *
75817125 ACATACACATTTCTGTTTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTAGACAA
65 ACATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACAA
* * *
75817190 CCCCATATTCTAAATTTATTTAGAGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGACTTACA
130 CCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTACA
* * * * * *
75817255 ATTAGACTTGGTTGGCACATAATTCAAAATATAGCAAGTCGTTTGTATCACAAATCCTTAGGAGG
195 AGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCTTA-GAAG
*
75817320 AAGTAAGGA-TCTGTGAATAGCTTAACATTGAACGAACCATGTCTAGCAAGGTTCTATTCCTTCT
259 AAGTAAGGAGT-TGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCT
* * * * * * **
75817384 CTCAACTACACCATTTTGTTATGGAGTGCCTGACGTAGTCAACTAGGATAACATCAAATTCTACT
323 CTCAGCTACGCCATTCTATTGTGGAGTGCCCGACGTAGTCAACTAGGATAACATCTCATTCTACT
* * *
75817449 ATTGATTGTTTAG-AGGTCTTTCAACAACTTTCTCGAGAATTTAACTTGCTGATTATTCTACAAC
388 ATTGATTGTTT-GTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAAC
* * * * * * * *
75817513 TCCCACAAGTTCCTCAAGTACCACTTCACATCGAGTCTTAAAGTTATCTATATAGCTTTCCTTGA
452 TCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCGA
75817578 GAAAAGTAGCATGAGTAGAAACT
517 GAAAAGTAGCATGAGTAGAAACT
* * * * * *
75817601 TTAATCGTACTATCTTTTGGA-TGTAGAATAATTTACCCATTT-TTCCTTTTC-AATATCCTGCA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCA-CCTTTTGTTCC-TTTCGAATATCCTACA
* * * * * * *
75817663 AACATGTACAATTGTATCCGTGCCTCCAA-TTTTTTGCATCCTTATTCAGAACGTGTGCTGGAAA
64 AACATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACA
* * *
75817727 ACTCCATATTCTAAAGTGATTTAGAGCGAGTTTCTTTTTATGCCACAGTTCAT-AGGTGACTTAC
129 ACCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTAC
** * ** * *
75817791 AAACAGACTTGGCTGATACATCATTCAGAATATAGCAAGTCATTTTTATCGCATAT-CTGTAGAA
194 AAGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCT-TAG-A
* *
75817855 AGAAGT-AGGAGTTGTAAATAGCTTAACATTGAACGAACCATATCAAGCAAGGTTCTATTCCTTC
257 AGAAGTAAGGAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTC
* ** * * *
75817919 TCTTAGCTACGCCATTCTATTGTGGAGTGCTTGACATAGTCAACTAAGATAACATCTCATT-TGG
322 TCTCAGCTACGCCATTCTATTGTGGAGTGCCCGACGTAGTCAACTAGGATAACATCTCATTCT-A
* * * * * * * * *
75817983 CTGTTGATTGTTTGCAGGTCTTTCTACATCTTTCCCGAGAACTTAACTTGGTTACTATTCTATAA
386 CTATTGATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAA
* *
75818048 CTCCCACAAGTTACTCGAGTACCA---T--TTT-A--C-----GTTATCCATGTAGCTTTCATCG
451 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCG
* * *
75818100 AGGAACGTAGTATGAGTAGAAACT
516 AGAAAAGTAGCATGAGTAGAAACT
* * * * *
75818124 TTGATTGTATTATCTTTCT-TATTATAGAATAATTCACCATTTGTTCCTTTCGAATATCTTACGA
1 TTGATTGTATTATCTTT-TGGATTGTAGAATAATTCACCTTTTGTTCCTTTCGAATATCCTACAA
* * * * * *
75818188 ATATGCACAATTCTGTCTGTGCATCCAACTTCTTTACATTCTTATTTAGAACGCGTGCTGGAAAA
65 ACATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACAA
* ** *
75818253 CCCCATATTTTAAAGTGATTTAGAATGGATTTCTTTTCATGCCACAGTTCATAAGGTGACTTACA
130 CCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTACA
* ** * *
75818318 A-TCAAACTTGGTTAACAAATCATTCAGAATATAGCAAGTCATTTGTATCGCATAT-CTCTAGAA
195 AGT-AGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCT-TAGAA
* * * *
75818381 GGAA-TTAGAGAGTTGTAAATAGCTTAAAATTGAACGAACCATGTCAAGAAAGGTTCTATTCCTT
258 -GAAGTAAG-GAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTT
* * *
75818445 CTCTCAGCTACGCCATTCTATTGTGGAGTGCCCAACGTAGTCAACTAGGATAACATCTCATTTTG
321 CTCTCAGCTACGCCATTCTATTGTGGAGTGCCCGACGTAGTCAACTAGGATAACATCTCATTCTA
* *
75818510 CTATTGATTGTTTGCAGGTCTTTCTACAACTTTCTTGAGAATTTAACTTGGTGATTGTTCTACAA
386 CTATTGATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAA
* * * *
75818575 CTCCCATAAGTTCCTCGAGTACCACTTTACTTTAAAGCTTAAAGTTATCCATGTAGCTTTCCTCA
451 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCG
*
75818640 AGGAAAGTAGCATGAGTAGAAACT
516 AGAAAAGTAGCATGAGTAGAAACT
* * * *
75818664 TTGATCGTATTATCTTTCGGATAGTAGAATAATTCA-CTATTTGTTCCTTTCGAATATCCTGCAA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCACCT-TTTGTTCCTTTCGAATATCCTACAA
* * * * * *
75818728 ACATACACAATTCTGT-TCGTACATCCAACTTCTTTGCATCCTTATTCAGAATGCGTGCCGGATA
65 ACATGCACAATTCTGTCT-GTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACA
*
75818792 ACCCCATATTCTAAAGTGATTTA-AGGCGGGTTTCTTTTCATGCCACAGTTTATAAGGTGACTTA
129 ACCCCATATTCTAAAGTGATTTAGA-GCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTA
* * * * * ** *
75818856 CAAGCAGACTTGGCTGGCACATCATTCAAAATATAGTAAGCCGTTTGTATCGCATATCCCAAAAA
193 CAAGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCTTAGAA
*
75818921 GAAGTAAGGAGTTGTGAAGAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCT
258 GAAGTAAGGAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCT
* * * ** ** * * *
75818986 CTCAGTTATGCCATTC-AGTTGTGGAGTGCCCAACAAAGAAAAACTAGGATAATATCTTATTTTA
323 CTCAGCTACGCCATTCTA-TTGTGGAGTGCCCGACGTAG-TCAACTAGGATAACATCTCATTCTA
* * *
75819050 CTATTGGTTTTTTGTAGGTCTTTTTACAACTTTCTCGAGAATTTAACTTGGTGATTGTT-TACAA
386 CTATTGATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAA
* * * *
75819114 CTTCCACAAGTTTCTCGAGTACCACTTTACTTTGAGGCTTAAATTTATCCATGTAGCTTTCCTTG
451 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCG
* * *
75819179 AGAAAAGTATCATGAGGAGAATCT
516 AGAAAAGTAGCATGAGTAGAAACT
* *
75819203 TTGATTGTATTATCTTTTAGATTGTAGAATAATTCACCCTTTGTTTGTTCCTTTCGGATATCCTA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCA-CC--T-TTTGTTCCTTTCGAATATCCTA
* * * * * * * *
75819268 CAAACATACCCAATTATGTCCGTGCATCCAACTTTTTTGCATCCTTATTAAGAATGTATGCTGGA
62 CAAACATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGA
* * *
75819333 CAACCCCATATTCTAAAGTGATTTAGAGCAGGTTTCTTTTTATGCCATAGTTCATAAGGTGACTT
127 CAACCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTT
* * * * *
75819398 GCAAGTAGACTTAGTTTGCACATTATTCAGAATATAGCAAGTCGTTTGTATTGCATATCCTTAGA
192 ACAAGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCTTAGA
* * * *
75819463 AGCAAGTAGGGAGTTGTGAATAGCTTAACATTGAATGAACTATGTCAAGCAATGTTCTATTCCTT
257 AG-AAGTAAGGAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTT
* * *
75819528 CTCTCAACTACGCCATTCTATTGTGGAGTGCCCGATGTAGTCAACTAGGATAATATCTCATTCTA
321 CTCTCAGCTACGCCATTCTATTGTGGAGTGCCCGACGTAGTCAACTAGGATAACATCTCATTCTA
* * * *
75819593 TTATTGATTGTTTGTAGGTCTTTCTACAACTTTTTCAATAATTTAACTTGGTGATTGTTCTACAA
386 CTATTGATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAA
*
75819658 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTTG
451 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCG
* * * *
75819723 AGGAAAGTAGCATTACTAGATACT
516 AGAAAAGTAGCATGAGTAGAAACT
*
75819747 TTGATTGTATTATCTTTGGGATTGTAGAATAATTCATCC-TTTGTTCCTTTCGAATATCCTACAA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCA-CCTTTTGTTCCTTTCGAATATCCTACAA
* * *
75819811 ACATGCACAATTCTATCTGTGCATCCAACTTTTTTGCATCCTTATTCAGAACATGTGCTGGACAA
65 ACATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACAA
* * *
75819876 CCCCATACTT-TAAAATGATTTAGAGTGGGTTTCTTTTCATGCCACTGTTCATAAGGTGACTTAC
130 CCCCATA-TTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTAC
* *
75819940 GAGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCATTTGTATCGCATATCCTTAGAAG
194 AAGTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCTTAGAAG
* *
75820005 AAAGTAAGGAGTTGTGAATAGCTTAACATTGAACAAACCATGTCAAGGAAGGTTCTATTCCTTCT
259 -AAGTAAGGAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCT
* * * * *
75820070 CTCAGCTATGCCATTCTGTTGTGGAGTGCTCGGA-TTAGTAAACTAGGATAACATCTCATTCTAC
323 CTCAGCTACGCCATTCTATTGTGGAGTGC-CCGACGTAGTCAACTAGGATAACATCTCATTCTAC
* * * * *
75820134 TGTTAATTATTTGTAGGTCTTTCTACAACTTTCTCAAGAATTTAACTTGG-GTATTGTTGTACAA
387 TATTGATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTG-ATTGTTCTACAA
* ** * *
75820198 CTCCCACAAGTTCCTCGAGTACCACTTTTCTTCAAGGCTTAAAGTTGTCCATGTAGCTTTCCTCA
451 CTCCCACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCG
*
75820263 AGAAAAGCAGCATGAGTAGAAACT
516 AGAAAAGTAGCATGAGTAGAAACT
*
75820287 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCACCTTTTGTTCCTTTCGAATATCCTGCAAA
1 TTGATTGTATTATCTTTTGGATTGTAGAATAATTCACCTTTTGTTCCTTTCGAATATCCTACAAA
* * *
75820352 AATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTTAGAACGTATGCTGGACAAC
66 CATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACAAC
* *
75820417 CCCATATTCTAAAGTGATTTAGGGTGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTACAA
131 CCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTACAA
* **
75820482 GTAGACTTGGTTGACACATCATTCA-AATATAGTTAGTCGTTTGTA
196 GTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTA
75820527 GGGAGTTGTG
Statistics
Matches: 2533, Mismatches: 340, Indels: 107
0.85 0.11 0.04
Matches are distributed among these distances:
523 64 0.03
524 48 0.02
525 79 0.03
526 69 0.03
527 187 0.07
528 2 0.00
530 2 0.00
531 1 0.00
532 3 0.00
533 1 0.00
535 3 0.00
536 182 0.07
537 65 0.03
538 80 0.03
539 280 0.11
540 989 0.39
541 7 0.00
543 261 0.10
544 209 0.08
545 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (539 bp):
TTGATTGTATTATCTTTTGGATTGTAGAATAATTCACCTTTTGTTCCTTTCGAATATCCTACAAA
CATGCACAATTCTGTCTGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTGGACAAC
CCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCACAGTTCATAAGGTGACTTACAA
GTAGACTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTATCGCATATCCTTAGAAGAA
GTAAGGAGTTGTGAATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCTCTC
AGCTACGCCATTCTATTGTGGAGTGCCCGACGTAGTCAACTAGGATAACATCTCATTCTACTATT
GATTGTTTGTAGGTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAACTCCC
ACAAGTTCCTCGAGTACCACTTTACTTTGAGGCTTAAAGTTATCCATGTAGCTTTCCTCGAGAAA
AGTAGCATGAGTAGAAACT
Found at i:75823739 original size:43 final size:41
Alignment explanation
Indices: 75823607--75823761 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
75823597 CTAAGTCTAT
* *
75823607 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGA-TTC
* *
75823649 GTGTAAGACCATATCTGGGATATGGCATTGATAAGAGATTTC
1 GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGA-TTC
** * *
75823691 GTGTAAGACCATAGATAGGCTATTGGCATCGATACGAGATTAC
1 GTGTAAGACCATATCTAGGATA-TGGCATCGATAAGAGATT-C
* * *
75823734 ATGTAAAACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTAGGATATGGCAT
75823762 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 63 0.67
43 31 0.33
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGATTC
Found at i:75823749 original size:85 final size:84
Alignment explanation
Indices: 75823607--75823763 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
75823597 CTAAGTCTAT
** * * *
75823607 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGACTTCGTGTAAGACCATATCTGGGATAT
1 GTGTAAGACCATAGATAGGATATGGCATCAATACGAGACTTCATGTAAAACCATATCTGGGATAT
75823672 GGCATTGATAAGAGATTTC
66 GGCATTGATAAGAGATTTC
* *
75823691 GTGTAAGACCATAGATAGGCTATTGGCATCGATACGAGA-TTACATGTAAAACCATATCTGGGAT
1 GTGTAAGACCATAGATAGGATA-TGGCATCAATACGAGACTT-CATGTAAAACCATATCTGGGAT
75823755 ATGGCATTG
64 ATGGCATTG
75823764 GTATGGTACC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 21 0.33
85 43 0.67
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCATAGATAGGATATGGCATCAATACGAGACTTCATGTAAAACCATATCTGGGATAT
GGCATTGATAAGAGATTTC
Found at i:75827509 original size:33 final size:33
Alignment explanation
Indices: 75827445--75827511 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
75827435 CTAAAGCCTA
*
75827445 ACACATGATCTTCACCAAATCTTAGTATACATC
1 ACACATGATCTTCACCAAATCTGAGTATACATC
*
75827478 ACACATGAT-TTCTACCGAATCTGAG-AGTACATC
1 ACACATGATCTTC-ACCAAATCTGAGTA-TACATC
75827511 A
1 A
75827512 TCTTATCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.28
Consensus pattern (33 bp):
ACACATGATCTTCACCAAATCTGAGTATACATC
Found at i:75832874 original size:36 final size:36
Alignment explanation
Indices: 75832827--75832898 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
75832817 CAAGACTGAA
*
75832827 GATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGTT
1 GATCTCCCCTCAATTTCCCTTCAGGAGTTTTAGGTT
75832863 GATCTCCCCTCAATTTCCCTTCAGGAGTTTTAGGTT
1 GATCTCCCCTCAATTTCCCTTCAGGAGTTTTAGGTT
75832899 TTCTTTATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (36 bp):
GATCTCCCCTCAATTTCCCTTCAGGAGTTTTAGGTT
Found at i:75835762 original size:2 final size:2
Alignment explanation
Indices: 75835755--75835788 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75835745 ATGATTTGTG
75835755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75835789 CAGTTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75843233 original size:2 final size:2
Alignment explanation
Indices: 75843226--75843250 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75843216 ATGATTTGTG
75843226 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75843251 AGTTAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75854325 original size:539 final size:537
Alignment explanation
Indices: 75853245--75854467 Score: 1777
Period size: 539 Copynumber: 2.3 Consensus size: 537
75853235 CCGAGTTGTT
* * *
75853245 AATAGCTTAACATTGAATGAACCATGTCAAGCAA-GTAACTATCCCTTCTCTCAGCTATGCCATT
1 AATAGCTTAACATTGAACGAACCATGTCAAGCAAGGT-TCTATTCCTTCTCTCAGCTATGCCATT
* * * * * *
75853309 CTGTTGTAGAGTGCTCGGCGTAATCAATTAGGATAACATCTCATTCTGTTGTAGATTATTTGCAG
65 CTGTTGTGGAGTGCTCGACGTAGTCAACTAGGATAACATCTCATTCTGTTGTTGATTGTTTGCAG
* * * * *
75853374 GTCTTTCTACAACTTTCTCGAGAATTTAACTTGGTGATTGTTCTACAACTCCCACAAGTTCCTTG
130 GTCTTTCTACAACTTTCTCGAGAATTAAACTTGGTGATTATTATACAACCCCCACAAGTTCCTCG
* * ** * *
75853439 AGTACCACTTTACTTTGAGGTTAAAGTTATCCACGTAGCTTTCCTCGAGGAAAGTAGCATAAGTA
195 AGTACCACTATACTTCGAGGTTAAAGTTATCCACGTAAATTTCCTCGAGAAAAGTAGCATAAGGA
**
75853504 CAAACTTAGATCGTATTATCTTTTGGATTGTAGAATAATTCACCCTTTGTTCCTTTCGAATATCT
260 CAAACTTAGATCGTATTATCTTTCAGATTGTAGAATAATTCACCCTTTGTTCCTTTCGAATATCT
** * * * * * *
75853569 TGAAAGATGCACAATTCTGTCTTTGTATCCAATTTCTTTACATCCTTATTTAGAACGTATGCTGG
325 ACAAACATGCACAATTCTGTATGTGCATCCAACTTCTTTACATCCTTATTCAGAACGTATGCTGG
*
75853634 ACAACCCCATATTCTAAAGTGATTTAGGGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGACT
390 ACAACCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGACT
* * *
75853699 TACAAGCAAGCTTGGTTAACACATCATTCAGATATAGTAAGTCTTTTGTATCACATATCCTTAGA
455 TACAAGCAAGCTTGGTTAACACATCATTCAGATATAGCAAGTCGTTTGTATCACATATCCCTAGA
*
75853764 AGAAAGTAGGGAGTTGTG
520 AGAAAGTAGGGAGTTATG
* * *
75853782 AATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCTTTCTCTCAACTACGCCATTC
1 AATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCTCTCAGCTATGCCATTC
* * *
75853847 AGTTGTGGAGTGCTCGACGTAGTCAACTAGGATAACATCTGATTCTGTTGTTGATTGTTTCCAGG
66 TGTTGTGGAGTGCTCGACGTAGTCAACTAGGATAACATCTCATTCTGTTGTTGATTGTTTGCAGG
*
75853912 TCTTTCTACAACTTTCTCGATAATTAAACTTGGTGATTATTATACAACCCCCACAAGTTCCTCGA
131 TCTTTCTACAACTTTCTCGAGAATTAAACTTGGTGATTATTATACAACCCCCACAAGTTCCTCGA
* * *
75853977 GTACCACTATACTTCGAGGCTTAAAGTTATCTATGTAAATTTCCTCGAGAAAAGTAGCATTAGGA
196 GTACCACTATACTTCGAGG-TTAAAGTTATCCACGTAAATTTCCTCGAGAAAAGTAGCATAAGGA
* * *
75854042 GAAACTTTGATCGTATTATCTTTCATATTGTAGAATAATTCACCCTTTGTTCCTTTCGAATATCC
260 CAAACTTAGATCGTATTATCTTTCAGATTGTAGAATAATTCACCCTTTGTTCCTTTCGAATAT-C
* * *
75854107 TACAAACATGCATAATTCTGTATGTGCATCCAACTTCTTTGCATCCTTATTCAGAACGTGTGCTG
324 TACAAACATGCACAATTCTGTATGTGCATCCAACTTCTTTACATCCTTATTCAGAACGTATGCTG
*
75854172 GACAACCCCATATTCTAAATTGATTTAGAGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGAC
389 GACAACCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGAC
* **
75854237 TTACAAGCATGCTTGGTTGGCACATCATTCAGAATATAGCAAGTCGTTTGTAT-AGCATATCCCT
454 TTACAAGCAAGCTTGGTTAACACATCATTCAG-ATATAGCAAGTCGTTTGTATCA-CATATCCCT
*
75854301 -GAAGGAAGTAGGGAGTTATG
517 AGAAGAAAGTAGGGAGTTATG
* * * * **
75854321 AATAGCTTAGCATTAAACGAACCTTGTCAAGGAAGGTTCTATTCCTTCTCTCAGCTATGAAATTC
1 AATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCTCTCAGCTATGCCATTC
* * * * *
75854386 TGTTGTGGAGTGCCCGACGTAGTAAACTCGGATAACATCTCATTCTGCTGTTGATTGTTTGGAGG
66 TGTTGTGGAGTGCTCGACGTAGTCAACTAGGATAACATCTCATTCTGTTGTTGATTGTTTGCAGG
75854451 TCTTTCTACAACTTTCT
131 TCTTTCTACAACTTTCT
75854468 TGATCATTTC
Statistics
Matches: 608, Mismatches: 73, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
537 188 0.31
538 98 0.16
539 296 0.49
540 26 0.04
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (537 bp):
AATAGCTTAACATTGAACGAACCATGTCAAGCAAGGTTCTATTCCTTCTCTCAGCTATGCCATTC
TGTTGTGGAGTGCTCGACGTAGTCAACTAGGATAACATCTCATTCTGTTGTTGATTGTTTGCAGG
TCTTTCTACAACTTTCTCGAGAATTAAACTTGGTGATTATTATACAACCCCCACAAGTTCCTCGA
GTACCACTATACTTCGAGGTTAAAGTTATCCACGTAAATTTCCTCGAGAAAAGTAGCATAAGGAC
AAACTTAGATCGTATTATCTTTCAGATTGTAGAATAATTCACCCTTTGTTCCTTTCGAATATCTA
CAAACATGCACAATTCTGTATGTGCATCCAACTTCTTTACATCCTTATTCAGAACGTATGCTGGA
CAACCCCATATTCTAAAGTGATTTAGAGCGGGTTTCTTTTCATGCCATAGTTCATAAGGTGACTT
ACAAGCAAGCTTGGTTAACACATCATTCAGATATAGCAAGTCGTTTGTATCACATATCCCTAGAA
GAAAGTAGGGAGTTATG
Found at i:75857213 original size:25 final size:25
Alignment explanation
Indices: 75857185--75857234 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
75857175 ATTTGAAATG
75857185 TTAGTTGATATAAAGTGTTCTATTA
1 TTAGTTGATATAAAGTGTTCTATTA
75857210 TTAGTTGATATAAAGTGTTCTATTA
1 TTAGTTGATATAAAGTGTTCTATTA
75857235 AGTGATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (25 bp):
TTAGTTGATATAAAGTGTTCTATTA
Found at i:75861727 original size:27 final size:28
Alignment explanation
Indices: 75861671--75861733 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
75861661 TGGGAAGTAG
**
75861671 TTGGGCCTGATGGGCCATATGAACGTGA
1 TTGGGCCTGATGGGCCATATGAACAAGA
*
75861699 TTGGGCC-GATGGGCCATGTGAACAAGA
1 TTGGGCCTGATGGGCCATATGAACAAGA
*
75861726 TTGAGCCT
1 TTGGGCCT
75861734 AAAGGGGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACAAGA
Found at i:75862081 original size:27 final size:27
Alignment explanation
Indices: 75862050--75862309 Score: 301
Period size: 27 Copynumber: 9.7 Consensus size: 27
75862040 TAATAAAGAG
* *
75862050 AAATTACTAAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75862077 AAATTACTGAAACACCCTCGATTTGAA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75862104 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
75862131 AAATTACTGAAATACCCTCGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75862157 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75862184 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** *
75862211 AAATTA-TCAAAATACCCTTAATTTTTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
75862238 AAATTACTGAAACACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * *
75862265 AAATTACCGACATACCCTTG-TAGTATA
1 AAATTACTGAAATACCCTCGAT-TTGTA
*
75862292 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
75862310 TGTAGTGTAA
Statistics
Matches: 201, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.13
27 174 0.87
28 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:75862240 original size:107 final size:108
Alignment explanation
Indices: 75862050--75862271 Score: 349
Period size: 107 Copynumber: 2.1 Consensus size: 108
75862040 TAATAAAGAG
* *
75862050 AAATTACTAAAATACCCCCGATTTGTAAAATTACTGAAACACCCTCGATTTGAAAAATTACTGAA
1 AAATTACTAAAATACCCCCGATTTGTAAAATTACCGAAACACCCTCGATTTGAAAAATTACTAAA
* *
75862115 ATACCCTTGATTTGTAAAATTACTGAAATACCCTCGA-TTGTA
66 ATACCCTTAATTTGTAAAATTACTGAAACACCCTCGATTTGTA
* *
75862157 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTA-TCAA
1 AAATTACTAAAATACCCCCGATTTGTAAAATTACCGAAACACCCTCGATTTGAAAAATTACT-AA
* *
75862221 AATACCCTTAATTTTTAAAATTACTGAAACACCCTTGATTTGTA
65 AATACCCTTAATTTGTAAAATTACTGAAACACCCTCGATTTGTA
75862265 AAATTAC
1 AAATTAC
75862272 CGACATACCC
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
106 1 0.01
107 92 0.88
108 12 0.11
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (108 bp):
AAATTACTAAAATACCCCCGATTTGTAAAATTACCGAAACACCCTCGATTTGAAAAATTACTAAA
ATACCCTTAATTTGTAAAATTACTGAAACACCCTCGATTTGTA
Found at i:75862346 original size:27 final size:27
Alignment explanation
Indices: 75862261--75862352 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
75862251 ACCCTTGATT
*
75862261 TGTAAAATTACCGACATACCCTTGTAG
1 TGTAAAATGACCGACATACCCTTGTAG
* * *
75862288 TATAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGACATACCCTTGTAG
* *
75862315 TGTAAAATGACCGACATACCCCTATAG
1 TGTAAAATGACCGACATACCCTTGTAG
*
75862342 GGTAAAATGAC
1 TGTAAAATGAC
75862353 TGTTTTGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (27 bp):
TGTAAAATGACCGACATACCCTTGTAG
Found at i:75862348 original size:54 final size:54
Alignment explanation
Indices: 75862182--75862349 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
75862172 CCTCGATTTG
* * * * * * * ***
75862182 TAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAATACCCTTA-ATTTT
1 TAAAATTACCGAAACACCCTTGATGTGTAAAATGACCGACATACCCCTATA-GGA
* * * * * *
75862236 TAAAATTACTGAAACACCCTTGATTTGTAAAATTACCGACATACCCTTGTAGTA
1 TAAAATTACCGAAACACCCTTGATGTGTAAAATGACCGACATACCCCTATAGGA
* *
75862290 TAAAATTACCGAAATACCCTTG-TAGTGTAAAATGACCGACATACCCCTATAGGG
1 TAAAATTACCGAAACACCCTTGAT-GTGTAAAATGACCGACATACCCCTATAGGA
75862344 TAAAAT
1 TAAAAT
75862350 GACTGTTTTG
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 94 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAACACCCTTGATGTGTAAAATGACCGACATACCCCTATAGGA
Found at i:75868351 original size:2 final size:2
Alignment explanation
Indices: 75868344--75868379 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
75868334 TGAAATTAGA
75868344 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75868380 TTGAAAGTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:75869720 original size:43 final size:43
Alignment explanation
Indices: 75869654--75870104 Score: 679
Period size: 43 Copynumber: 10.5 Consensus size: 43
75869644 TATTATAATT
*
75869654 GGGCCTTCGTGCCTAGCATGCTTCGTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
75869697 GGGCCTTCGTGCCTAGCAGGCTTCTTGCCGGT-ATGTGAATTT
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* **
75869739 GGGCCTTCGTGCCTAGCAGGGTTCGTGTTGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* *
75869782 GGGCCTTCGTGCCTAGTAGGCTTCTTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
75869825 GGGCTTTCGTGCCTAGCAGCCTTCTTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
*
75869868 GGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* *
75869911 GGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTGTATTT
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
75869954 GGGCTTTTGTGCCTAGCAGGCTTCTTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
*
75869997 GGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
75870040 GGGCCTTTGTGCCTAACAGGCTTCATGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* *
75870083 GGGTCTTTGTGCCTAGCAGGCT
1 GGGCCTTCGTGCCTAGCAGGCT
75870105 ATGATGCTGG
Statistics
Matches: 368, Mismatches: 39, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 0.10
43 332 0.90
ACGTcount: A:0.10, C:0.23, G:0.33, T:0.34
Consensus pattern (43 bp):
GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
Found at i:75870142 original size:45 final size:44
Alignment explanation
Indices: 75869654--75870176 Score: 351
Period size: 43 Copynumber: 12.1 Consensus size: 44
75869644 TATTATAATT
* * **
75869654 GGGCCTTCGTGCCTAGCATGCT-TCG-TGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTAT-GATGCCGGTGATGACTATTC
* ** *** *
75869697 GGGCCTTCGTGCCTAGCAGGCT-TCTTGCCGGT-ATGTGAATTT
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* * ** **
75869739 GGGCCTTCGTGCCTAGCAGGGT-TCG-TGTTGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTAT-GATGCCGGTGATGACTATTC
* * ** **
75869782 GGGCCTTCGTGCCTAGTAGGCT-TCTTGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* ** **
75869825 GGG-CTTTCGTGCCTAGCAGCCT-TCTTGCCGGTGATGTGTATTC
1 GGGCCTTT-GTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* * **
75869868 GGGCCTTCGTGCCTAGCAGGCT-TCATGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* * ** *
75869911 GGGCCTTCGTGCCTAGCAGGCT-TCG-TGTCGGTGATGTGTATTT
1 GGGCCTTTGTGCCTAGCAGGCTAT-GATGCCGGTGATGACTATTC
* ** **
75869954 GGGCTTTTGTGCCTAGCAGGCT-TCTTGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* * **
75869997 GGGCCTTCGTGCCTAGCAGGCTTTG-TGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* * **
75870040 GGGCCTTTGTGCCTAACAGGCT-TCATGCCGGTGATGTGTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
* *
75870083 GGGTCTTTGTGCCTAGCAGGCTATGATGCTGGTGGAAT-ACTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGT-G-ATGACTATTC
* * * *
75870128 GGGCCTTTGAGCCTAGCATGCTATAATGCCAGTGA-GATACTATTC
1 GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATG--ACTATTC
75870173 GGGC
1 GGGC
75870177 TTTCGATATC
Statistics
Matches: 417, Mismatches: 47, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
42 39 0.09
43 319 0.76
44 13 0.03
45 44 0.11
46 2 0.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.33
Consensus pattern (44 bp):
GGGCCTTTGTGCCTAGCAGGCTATGATGCCGGTGATGACTATTC
Found at i:75872824 original size:93 final size:93
Alignment explanation
Indices: 75872712--75872883 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75872702 GCCCATAAGT
* *
75872712 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75872777 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75872805 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75872870 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
75872884 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75872879 original size:46 final size:46
Alignment explanation
Indices: 75872704--75872879 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75872694 TGTAACCCGC
* * *
75872704 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75872750 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75872800 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
75872843 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75872880 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75877172 original size:93 final size:93
Alignment explanation
Indices: 75877060--75877231 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75877050 CGCCCATAAG
* *
75877060 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75877125 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75877153 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75877218 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75877232 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75877228 original size:46 final size:46
Alignment explanation
Indices: 75877053--75877228 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75877043 TGTAACCCGC
* * *
75877053 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75877099 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75877149 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75877192 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75877229 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75884727 original size:93 final size:93
Alignment explanation
Indices: 75884615--75884786 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75884605 CGCCCATAAG
* *
75884615 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75884680 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75884708 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75884773 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75884787 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75884783 original size:46 final size:46
Alignment explanation
Indices: 75884608--75884783 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75884598 TGTAACCCGC
* * *
75884608 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75884654 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75884704 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75884747 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75884784 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75886135 original size:9 final size:9
Alignment explanation
Indices: 75886117--75886189 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
75886107 TTTATTTAAG
75886117 TTAA-GTGT
1 TTAATGTGT
75886125 TTAATGTGT
1 TTAATGTGT
75886134 TT--TGTGT
1 TTAATGTGT
*
75886141 TTAATAAATGT
1 TTAAT--GTGT
75886152 TTAAATGTGT
1 TT-AATGTGT
*
75886162 TTAATATGT
1 TTAATGTGT
75886171 TT-A--T-T
1 TTAATGTGT
75886176 TTAATGTGT
1 TTAATGTGT
75886185 TTAAT
1 TTAAT
75886190 TGTAGGTGTC
Statistics
Matches: 52, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
5 3 0.06
6 2 0.04
7 7 0.13
8 6 0.12
9 21 0.40
10 5 0.10
11 5 0.10
12 3 0.06
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:75886293 original size:24 final size:24
Alignment explanation
Indices: 75886266--75886314 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
75886256 TTCAAGTGGT
* *
75886266 TTTCGGTTACATACAAGGGGGACA
1 TTTCAGTTACATACAAGGGAGACA
*
75886290 TTTCAGTTAGATACAAGGGAGACA
1 TTTCAGTTACATACAAGGGAGACA
75886314 T
1 T
75886315 CATACATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (24 bp):
TTTCAGTTACATACAAGGGAGACA
Found at i:75889917 original size:21 final size:23
Alignment explanation
Indices: 75889883--75889934 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
75889873 ATGTGTTTTT
*
75889883 TGTTTGATAAG-TT-TTTAAATG
1 TGTTTAATAAGTTTGTTTAAATG
* *
75889904 TGTTTAATATGTTTGTTTTAATG
1 TGTTTAATAAGTTTGTTTAAATG
75889927 TGTTTAAT
1 TGTTTAAT
75889935 TGCAGGTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 9 0.35
22 2 0.08
23 15 0.58
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.58
Consensus pattern (23 bp):
TGTTTAATAAGTTTGTTTAAATG
Found at i:75890104 original size:20 final size:20
Alignment explanation
Indices: 75890067--75890105 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75890057 CATCATACAT
*
75890067 CATTTAAAGAGCTGTTATAA
1 CATTTAAAGAGCTATTATAA
75890087 CATTTAAAAGAGC-ATTATA
1 CATTT-AAAGAGCTATTATA
75890106 TCTTCTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (20 bp):
CATTTAAAGAGCTATTATAA
Found at i:75894763 original size:30 final size:30
Alignment explanation
Indices: 75894727--75894827 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75894717 GACAAGATTG
* * *
75894727 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75894757 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75894785 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75894814 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75894828 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75894839 original size:29 final size:28
Alignment explanation
Indices: 75894756--75894831 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75894746 AAAATTGTAC
* *
75894756 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75894784 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75894813 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75894832 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75902618 original size:30 final size:30
Alignment explanation
Indices: 75902582--75902682 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75902572 GACAAGATTG
* * *
75902582 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75902612 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75902640 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75902669 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75902683 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75902694 original size:29 final size:28
Alignment explanation
Indices: 75902611--75902686 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75902601 AAAATTGTAC
* *
75902611 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75902639 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75902668 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75902687 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75906018 original size:18 final size:18
Alignment explanation
Indices: 75905997--75906032 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75905987 AAGTTGTTTT
*
75905997 TGCTAAAGAAGAAGAAGA
1 TGCTAAAGAAGAAAAAGA
*
75906015 TGCTAAGGAAGAAAAAGA
1 TGCTAAAGAAGAAAAAGA
75906033 AAAAGAAGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.28, T:0.11
Consensus pattern (18 bp):
TGCTAAAGAAGAAAAAGA
Found at i:75906348 original size:17 final size:17
Alignment explanation
Indices: 75906323--75906359 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75906313 CAAAGATGAA
*
75906323 AAAACAAAAGAAGGAGG
1 AAAACAAAAGAAGGAAG
*
75906340 AAAAGAAAAGAAGGAAG
1 AAAACAAAAGAAGGAAG
75906357 AAA
1 AAA
75906360 CTTCGTGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (17 bp):
AAAACAAAAGAAGGAAG
Found at i:75906492 original size:17 final size:17
Alignment explanation
Indices: 75906470--75906506 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
75906460 GATAAGTACA
*
75906470 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
75906487 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
75906504 CAT
1 CAT
75906507 GTTTGGGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:75911473 original size:17 final size:17
Alignment explanation
Indices: 75911436--75911475 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
75911426 TTCTGTGTGG
* *
75911436 GGCCTACAGGCCTATTG
1 GGCCTACAGGCCCATTA
*
75911453 GGCCTACAGGCCCGTTA
1 GGCCTACAGGCCCATTA
75911470 GGCCTA
1 GGCCTA
75911476 TATGGCCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (17 bp):
GGCCTACAGGCCCATTA
Found at i:75919459 original size:3 final size:3
Alignment explanation
Indices: 75919453--75919605 Score: 245
Period size: 3 Copynumber: 50.7 Consensus size: 3
75919443 AAACGTTCAT
* *
75919453 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTT TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
75919501 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
75919549 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTAC -TG TTC TTC TTC TTTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC -TTC
*
75919595 TTC TCC TTC TT
1 TTC TTC TTC TT
75919606 TTTTTTCTTT
Statistics
Matches: 141, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
3 137 0.97
4 4 0.03
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:75923567 original size:38 final size:38
Alignment explanation
Indices: 75923519--75923779 Score: 252
Period size: 38 Copynumber: 6.8 Consensus size: 38
75923509 ATGAAATACA
* * *
75923519 GAATATACTGAATGTTGCTCAATTGAGAAAAATCTACT
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
*
75923557 GAACACACTGAATGTTGCTCAATCGAGCAAAATCTACT
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
* * * *
75923595 GAATACATTGAATGTTGCTCAATCAAGCAAAACCTACC
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
* *
75923633 GAATATACTAAATGTTGCTCAATCGAGCAAAATCTACT
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
* ** ** * *
75923671 AAATACACTGAATGTTGCTCAATTAAGTTAAACCTACC
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
** * * * *
75923709 GAATATGCCGAATGTTGCTTAATCGAGTAAAACCTACT
1 GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
* ** * * *
75923747 AAAATATTCTGAATGATGTTCAATCGAGAAAAA
1 -GAATACACTGAATGTTGCTCAATCGAGCAAAA
75923780 ATTCACTGAT
Statistics
Matches: 182, Mismatches: 40, Indels: 1
0.82 0.18 0.00
Matches are distributed among these distances:
38 157 0.86
39 25 0.14
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (38 bp):
GAATACACTGAATGTTGCTCAATCGAGCAAAATCTACT
Found at i:75923647 original size:76 final size:76
Alignment explanation
Indices: 75923520--75923749 Score: 298
Period size: 76 Copynumber: 3.0 Consensus size: 76
75923510 TGAAATACAG
* * * * * *
75923520 AATATACTGAATGTTGCTCAATTGAGAAAAATCTACTGAACACACTGAATGTTGCTCAATCGAGC
1 AATACACTGAATGTTGCTCAATTAAGAAAAACCTACCGAATATACTGAATGTTGCTCAATCGAGC
*
75923585 AAAATCTACTG
66 AAAATCTACTA
* * * *
75923596 AATACATTGAATGTTGCTCAATCAAGCAAAACCTACCGAATATACTAAATGTTGCTCAATCGAGC
1 AATACACTGAATGTTGCTCAATTAAGAAAAACCTACCGAATATACTGAATGTTGCTCAATCGAGC
75923661 AAAATCTACTA
66 AAAATCTACTA
** * * * *
75923672 AATACACTGAATGTTGCTCAATTAAGTTAAACCTACCGAATATGCCGAATGTTGCTTAATCGAGT
1 AATACACTGAATGTTGCTCAATTAAGAAAAACCTACCGAATATACTGAATGTTGCTCAATCGAGC
*
75923737 AAAACCTACTA
66 AAAATCTACTA
75923748 AA
1 AA
75923750 ATATTCTGAA
Statistics
Matches: 133, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 133 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (76 bp):
AATACACTGAATGTTGCTCAATTAAGAAAAACCTACCGAATATACTGAATGTTGCTCAATCGAGC
AAAATCTACTA
Found at i:75923722 original size:114 final size:114
Alignment explanation
Indices: 75923519--75923779 Score: 297
Period size: 114 Copynumber: 2.3 Consensus size: 114
75923509 ATGAAATACA
* * * *
75923519 GAATATACTGAATGTTGCTCAATTGAGAAAAATCTACTGAACACACTGAATGTTGCTCAATCGAG
1 GAATATACTAAATGTTGCTCAATCGAGAAAAATCTACTAAACACACTGAATGTTGCTCAATCAAG
* * **
75923584 CAAAATCTACTGAATACATTGAATGTTGCTCAATCAAGCAAAACCTACC
66 CAAAACCTACCGAATACACCGAATGTTGCTCAATCAAGCAAAACCTACC
* * *
75923633 GAATATACTAAATGTTGCTCAATCGAGCAAAATCTACTAAATACACTGAATGTTGCTCAATTAAG
1 GAATATACTAAATGTTGCTCAATCGAGAAAAATCTACTAAACACACTGAATGTTGCTCAATCAAG
** ** * * * *
75923698 TTAAACCTACCGAATATGCCGAATGTTGCTTAATCGAGTAAAACCTACTA
66 CAAAACCTACCGAATACACCGAATGTTGCTCAATCAAGCAAAACCTAC-C
* * * * *
75923748 AAATATTCTGAATGATGTTCAATCGAGAAAAA
1 GAATATACTAAATGTTGCTCAATCGAGAAAAA
75923780 ATTCACTGAT
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
114 95 0.79
115 26 0.21
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (114 bp):
GAATATACTAAATGTTGCTCAATCGAGAAAAATCTACTAAACACACTGAATGTTGCTCAATCAAG
CAAAACCTACCGAATACACCGAATGTTGCTCAATCAAGCAAAACCTACC
Found at i:75934226 original size:22 final size:23
Alignment explanation
Indices: 75934183--75934226 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
75934173 TTGGTTTCTC
75934183 TTTCTTTCTTTATCCTCCTTCAT
1 TTTCTTTCTTTATCCTCCTTCAT
* *
75934206 TTTCTTT-TTTTTCCTCTTTCA
1 TTTCTTTCTTTATCCTCCTTCA
75934227 AGTGAGTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTCTTTCTTTATCCTCCTTCAT
Found at i:75937190 original size:29 final size:29
Alignment explanation
Indices: 75937157--75937215 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75937147 GTGACGAGAT
75937157 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75937186 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75937215 T
1 T
75937216 TGTAACACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:75938650 original size:40 final size:40
Alignment explanation
Indices: 75938566--75938815 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
75938556 CGGGATTTAA
* * * * **
75938566 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75938606 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75938646 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75938686 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75938726 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75938766 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75938806 CCGGATATAT
1 CCGGATATAT
75938816 TTCCAATGTT
Statistics
Matches: 192, Mismatches: 16, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 191 0.99
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75946842 original size:40 final size:40
Alignment explanation
Indices: 75946734--75946983 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
75946724 CGGGATTTAA
* * * * *
75946734 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75946774 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75946814 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75946854 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75946894 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75946934 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75946974 CCGGATATAT
1 CCGGATATAT
75946984 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75956528 original size:30 final size:30
Alignment explanation
Indices: 75956492--75956622 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
75956482 GACAAGATTG
* * * * *
75956492 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
75956522 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
75956550 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75956580 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75956609 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75956623 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:75956583 original size:58 final size:58
Alignment explanation
Indices: 75956492--75956622 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
75956482 GACAAGATTG
* * * * * *
75956492 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
75956550 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
75956609 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75956623 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:75967636 original size:43 final size:42
Alignment explanation
Indices: 75967589--75967687 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
75967579 TCCCAAACGT
* *
75967589 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGTAACCAAATA-CGATGCCGA-TATCCCAGACAG
* * * *
75967632 GGTCTTACACGAAACCATATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAACCAAATACGATGCCGATATCCCAGACAG
75967674 GGTCTTACACGTAA
1 GGTCTTACACGTAA
75967688 ATCTCAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAACCAAATACGATGCCGATATCCCAGACAG
Found at i:75967669 original size:42 final size:41
Alignment explanation
Indices: 75967622--75967734 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 41
75967612 GATGCCACTA
* * * *
75967622 TCCCAGACAGGGTCTTACACGAAACCATA-TACGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAACCA-AGT-CAATGCCAAAG
75967664 TCCCAGACATGGTCTTACACGTAAATCTCAAGTCAATGCCAAAG
1 TCCCAGACATGGTCTTACACG-AAA-C-CAAGTCAATGCCAAAG
*
75967708 TCCCAGACATGGTCTTACACGATACCA
1 TCCCAGACATGGTCTTACACGAAACCA
75967735 CACCTCGGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
41 2 0.03
42 21 0.34
43 5 0.08
44 31 0.50
45 3 0.05
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAACCAAGTCAATGCCAAAG
Found at i:75967714 original size:44 final size:42
Alignment explanation
Indices: 75967566--75967734 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
75967556 AGAAAGCTCG
* * * * * * *
75967566 TACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAAAGTCCCAGACATGGTCTTACACGAAACCATA
* * *
75967608 TATCGATGCCACTA-TCCCAGACAGGGTCTTACACGAAACCATA
1 TA-CAATGCCA-AAGTCCCAGACATGGTCTTACACGAAACCATA
* * *
75967651 TACGATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCA-A
1 TACAATGCCAAAGTCCCAGACATGGTCTTACACG-AAA-C-CATA
*
75967695 GT-CAATGCCAAAGTCCCAGACATGGTCTTACACGATACCA
1 -TACAATGCCAAAGTCCCAGACATGGTCTTACACGAAACCA
75967735 CACCTCGGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 30 0.29
43 36 0.35
44 31 0.30
45 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (42 bp):
TACAATGCCAAAGTCCCAGACATGGTCTTACACGAAACCATA
Found at i:75975351 original size:43 final size:43
Alignment explanation
Indices: 75975299--75975412 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
75975289 GCTGGTGAAT
* *
75975299 AATATTATCGGGCTTTAGGCCTAGCAGGCTATAATACTGGTGA
1 AATAATATCGGGCTTTAGGCCTAGCAGGCTATAATACCGGTGA
* * *
75975342 GATAATATCGGGC-TTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTTAG-GCCTAGCAGGCTATAATACCGGTGA
* * *
75975385 AATGATATCGGGCTTCAAGCCTAGCAGG
1 AATAATATCGGGCTTTAGGCCTAGCAGG
75975413 TGAAATGCCG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 3 0.05
43 55 0.93
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTTAGGCCTAGCAGGCTATAATACCGGTGA
Found at i:75977819 original size:44 final size:45
Alignment explanation
Indices: 75977651--75977913 Score: 154
Period size: 46 Copynumber: 5.6 Consensus size: 45
75977641 ATGCCAATGC
* * * * *
75977651 CATGTCCCAAACATGGTCTTACCCTGACTATCATCATCGAGGCTGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTA-CATC-TCAAGGCCGATG
* ** * * *
75977699 CCATGTCCCAGACATGGTCTTACACTTGCTCTCACATAGCTATGTCGATG
1 -CATGTCCCAGACAT-GTCTTACAC-TG-ACT-ACATCTCAAGGCCGATG
* * *
75977749 CCATGTCCCAAATATGGTCTTACACTGAC-ACATCTCGTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACTACATCTC-AAGGCCGATG
* ** *
75977795 CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACATCTCAAGGCCGATG
* ** * *
75977841 CATGTCCCAGACATGTCTTACACT-AGCTCTCGCCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGA-CT-ACATCTCAAGGCCGATG
75977887 CCATGTCCCAGACATGGTCTTACACTG
1 -CATGTCCCAGACAT-GTCTTACACTG
75977914 GCTCATAATA
Statistics
Matches: 172, Mismatches: 30, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 58 0.34
47 16 0.09
48 11 0.06
49 24 0.14
50 31 0.18
51 5 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTACATCTCAAGGCCGATG
Found at i:75977831 original size:99 final size:99
Alignment explanation
Indices: 75977647--75977822 Score: 256
Period size: 99 Copynumber: 1.8 Consensus size: 99
75977637 TAGAATGCCA
* *
75977647 ATGCCATGTCCCAAACATGGTCTTACCCTGACTATCATCATCGAGGCTGACGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCGAGGCCGACGCCATGTCCCAGAC
*
75977712 ATGGTCTTACACTTGCTCTCACATAGCTATGTCG
66 ATGGTCTTACACTGGCTCTCACATAGCTATGTCG
* *
75977746 ATGCCATGTCCCAAATATGGTCTTACACTGAC-A-CATC-TCGTA-GCCGATG-CATGTCCCAGA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCG-AGGCCGACGCCATGTCCCAGA
75977806 CAT-GTCTTACACTGGCT
65 CATGGTCTTACACTGGCT
75977823 TATGTCTCAA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
94 13 0.18
95 14 0.20
96 8 0.11
97 5 0.07
98 1 0.01
99 30 0.42
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (99 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCGAGGCCGACGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCACATAGCTATGTCG
Found at i:75977848 original size:46 final size:46
Alignment explanation
Indices: 75977792--75977917 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 46
75977782 CTCGTAGCCG
* *
75977792 ATGCATGTCCCAGACATGTCTTACACTGGCT-TATGTCTCAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGCCTCAAGGCCA
* * * *
75977838 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGCCTCAATGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAAGGCCA
75977884 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTC
75977918 ATAATAACCA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 41 0.59
47 15 0.21
48 14 0.20
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAAGGCCA
Found at i:75980115 original size:18 final size:18
Alignment explanation
Indices: 75980092--75980129 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
75980082 AATATATATT
75980092 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
75980110 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
75980128 AA
1 AA
75980130 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:75980122 original size:13 final size:13
Alignment explanation
Indices: 75980106--75980130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75980096 CAAGTACCCA
75980106 ACCCAACCCAATT
1 ACCCAACCCAATT
75980119 ACCCAACCCAAT
1 ACCCAACCCAAT
75980131 CATAAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:75980228 original size:9 final size:9
Alignment explanation
Indices: 75980214--75980281 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
75980204 TTTATACAAA
75980214 TAATTCGAT
1 TAATTCGAT
**
75980223 TAATTCGGG
1 TAATTCGAT
*
75980232 TAATTC-AGG
1 TAATTCGA-T
75980241 TAATTCGGA-
1 TAATTC-GAT
75980250 TAATTCGAT
1 TAATTCGAT
75980259 TAATTCGAT
1 TAATTCGAT
* *
75980268 TAACTCGGT
1 TAATTCGAT
75980277 TAATT
1 TAATT
75980282 TTATACTTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
8 2 0.04
9 46 0.94
11 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (9 bp):
TAATTCGAT
Found at i:75980237 original size:18 final size:18
Alignment explanation
Indices: 75980213--75980265 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
75980203 TTTTATACAA
75980213 ATAATTCGATTAATTCGG
1 ATAATTCGATTAATTCGG
* *
75980231 GTAATTC-AGGTAATTCGG
1 ATAATTCGA-TTAATTCGG
75980249 ATAATTCGATTAATTCG
1 ATAATTCGATTAATTCG
75980266 ATTAACTCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 27 0.93
19 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (18 bp):
ATAATTCGATTAATTCGG
Found at i:75983162 original size:41 final size:41
Alignment explanation
Indices: 75983115--75983196 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
75983105 CACCTTTGTG
* * *
75983115 GACCATTTAAGGGCTATTTTCCAAGCCAATAGTCACTCATA
1 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
75983156 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
1 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
75983197 CATTCAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (41 bp):
GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
Found at i:75985615 original size:37 final size:37
Alignment explanation
Indices: 75985565--75985655 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
75985555 TTATTACGAA
*
75985565 GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
75985602 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
75985639 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
75985656 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:75985750 original size:48 final size:48
Alignment explanation
Indices: 75985695--75985894 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
75985685 TGTTACAACA
*
75985695 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
75985743 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
75985791 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
75985839 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
75985887 TTCACATT
1 TTCACATT
75985895 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:75985994 original size:47 final size:47
Alignment explanation
Indices: 75985886--75986123 Score: 395
Period size: 47 Copynumber: 5.0 Consensus size: 47
75985876 CACACATATG
75985886 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
* *
75985935 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75985982 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75986029 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACAC
*
75986078 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
75986124 TCTCCTACAT
Statistics
Matches: 182, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
47 100 0.55
49 82 0.45
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
Found at i:75985999 original size:96 final size:97
Alignment explanation
Indices: 75985886--75986121 Score: 397
Period size: 96 Copynumber: 2.5 Consensus size: 97
75985876 CACACATATG
75985886 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
75985951 TCGGCCATTAGGCCTTATCACA-TATATACTC
66 TCGGCCATTAGGCCTTATCACAGTATATACAC
* *
75985982 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
75986045 TTGGCCATTAGGCCTTATCACATGTATATACAC
66 TCGGCCATTAGGCCTTATCACA-GTATATACAC
*
75986078 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
75986122 CATCTCCTAC
Statistics
Matches: 131, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
94 45 0.34
96 81 0.62
98 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (97 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAGTATATACAC
Found at i:75990097 original size:200 final size:200
Alignment explanation
Indices: 75989723--75990102 Score: 530
Period size: 200 Copynumber: 1.9 Consensus size: 200
75989713 GTTTTTCACT
* *
75989723 TTATCCAATTTGGTCCTTAAAATGCAATTAGACATTTTATGCATAAAATTTCTTCATGAAACTTT
1 TTATCCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTTCTTCATGAAACTTT
* * * * *
75989788 CACACAAGCATGTATTCATAACATAAACCTCATGAGAATCATAAAATAATTATTTCTATCTTGGA
66 CACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATTATTTCTATCTCGAA
** * * *
75989853 TTTGTGGTCTCGAAACCTCTATTCTAACTGGGCCTTAATTCGGGATGTTACAGAACACAAGTTTT
131 TTTGTGGTCTCGAAACCTAAATTCGAACTAGGCCCTAATTCGGGATGTTACAGAACACAAGTTTT
75989918 GTATC
196 GTATC
* * * *
75989923 TTATTCAATTTGATCCCTAAAGTTCAATTAGACATTTTATGCATAGAATTTCTTCATGAAACTTT
1 TTATCCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTTCTTCATGAAACTTT
* ** * *
75989988 CACACAAGCATGCATACATATCATGGACCTCATAATAATCATAAAATCATTATTTCTATCTCGAA
66 CACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATTATTTCTATCTCGAA
*
75990053 TTTGTGGTCTCGAAACC-AAAGTTCCGAA-TAGGCCCTATTTCGGGATGTTA
131 TTTGTGGTCTCGAAACCTAAA-TT-CGAACTAGGCCCTAATTCGGGATGTTA
75990103 TAACTCCCCC
Statistics
Matches: 156, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
199 1 0.01
200 152 0.97
201 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.36
Consensus pattern (200 bp):
TTATCCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTTCTTCATGAAACTTT
CACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATTATTTCTATCTCGAA
TTTGTGGTCTCGAAACCTAAATTCGAACTAGGCCCTAATTCGGGATGTTACAGAACACAAGTTTT
GTATC
Found at i:75998793 original size:50 final size:50
Alignment explanation
Indices: 75998716--75998832 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 50
75998706 GACACACCAC
* * * *
75998716 AGCTCTTATGAGCATCCCGATATTTGGCTCTCACGAGATTCCCGAT-TAA
1 AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
* * * *
75998765 TGGCTCTCATGAGCTTCCCGATAATTGGCTCGCATGAGCTTCTCGATGTAA
1 -AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
*
75998816 AGCTCACATGAGCTTCC
1 AGCTCTCATGAGCTTCC
75998833 AGTTATATGG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 53 0.95
51 3 0.05
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (50 bp):
AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
Found at i:75998800 original size:25 final size:25
Alignment explanation
Indices: 75998717--75998811 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
75998707 ACACACCACA
* * *
75998717 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCATGAGCTTCCCGATAATTG
* *
75998742 GCTCTCACGAGATTCCCGATTAA-TG
1 GCTCTCATGAGCTTCCCGA-TAATTG
75998767 GCTCTCATGAGCTTCCCGATAATTG
1 GCTCTCATGAGCTTCCCGATAATTG
* *
75998792 GCTCGCATGAGCTTCTCGAT
1 GCTCTCATGAGCTTCCCGAT
75998812 GTAAAGCTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
24 3 0.05
25 54 0.92
26 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATAATTG
Found at i:75998845 original size:25 final size:24
Alignment explanation
Indices: 75998723--75998854 Score: 72
Period size: 25 Copynumber: 5.3 Consensus size: 24
75998713 CACAGCTCTT
* * *
75998723 ATGAGCATCCCGATATTTGGCTCTC
1 ATGAGC-TTCCGATATATGGCTCAC
* * *
75998748 ACGAGATTCCCGAT-TAATGGCTCTC
1 ATGAGCTT-CCGATAT-ATGGCTCAC
*
75998773 ATGAGCTTCCCGATA-ATTGGCTCGC
1 ATGAGCTT-CCGATATA-TGGCTCAC
* **
75998798 ATGAGCTTCTCGATGTAAAGCTCAC
1 ATGAGCTTC-CGATATATGGCTCAC
*
75998823 ATGAGCTTCCAGTTATATGGCTCA-
1 ATGAGCTTCC-GATATATGGCTCAC
*
75998847 AAGAGCTT
1 ATGAGCTT
75998855 TCCGTTTACA
Statistics
Matches: 84, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
24 12 0.14
25 71 0.85
26 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (24 bp):
ATGAGCTTCCGATATATGGCTCAC
Found at i:75999068 original size:30 final size:34
Alignment explanation
Indices: 75999006--75999071 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 34
75998996 CGAAACGAAC
75999006 TATTACTCGTATATACGTGAAGTACATGGAAATGA
1 TATTACTCGTATATACGTGAAG-ACATGGAAATGA
*
75999041 TATTACTTG-ATATAC-TGAAG-CAT-GAAATGA
1 TATTACTCGTATATACGTGAAGACATGGAAATGA
75999071 T
1 T
75999072 TGTTACATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 8 0.27
31 3 0.10
33 5 0.17
34 6 0.20
35 8 0.27
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (34 bp):
TATTACTCGTATATACGTGAAGACATGGAAATGA
Found at i:76002293 original size:31 final size:31
Alignment explanation
Indices: 76002248--76002316 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
76002238 TGAATCAAAA
* * *
76002248 AAGTATAGATACCAAAGTGAACCTAATTTTC-
1 AAGTTTAGAAACCAAAGTGAACCT-ATTTGCT
*
76002279 AAGTTTAGAAACCAACGTGAACCTATTTGCT
1 AAGTTTAGAAACCAAAGTGAACCTATTTGCT
76002310 AAGTTTA
1 AAGTTTA
76002317 ATGGCCAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 5 0.15
31 28 0.85
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (31 bp):
AAGTTTAGAAACCAAAGTGAACCTATTTGCT
Found at i:76012818 original size:164 final size:164
Alignment explanation
Indices: 76012622--76012949 Score: 656
Period size: 164 Copynumber: 2.0 Consensus size: 164
76012612 TAAATTACCA
76012622 ATACTTTCTGGCAAAGCGACGATGTATGAAAAAATGATTGTAATTAAGTTAATCGATAGTCTCTA
1 ATACTTTCTGGCAAAGCGACGATGTATGAAAAAATGATTGTAATTAAGTTAATCGATAGTCTCTA
76012687 TTTATAAAGAAAAGTACTAGAGTTCTGCTTAAATAAAATCTGATTAAATAATATTATTTTAATAA
66 TTTATAAAGAAAAGTACTAGAGTTCTGCTTAAATAAAATCTGATTAAATAATATTATTTTAATAA
76012752 AAAATACAACTCCTACTCTAATTGAAGAGTGAGG
131 AAAATACAACTCCTACTCTAATTGAAGAGTGAGG
76012786 ATACTTTCTGGCAAAGCGACGATGTATGAAAAAATGATTGTAATTAAGTTAATCGATAGTCTCTA
1 ATACTTTCTGGCAAAGCGACGATGTATGAAAAAATGATTGTAATTAAGTTAATCGATAGTCTCTA
76012851 TTTATAAAGAAAAGTACTAGAGTTCTGCTTAAATAAAATCTGATTAAATAATATTATTTTAATAA
66 TTTATAAAGAAAAGTACTAGAGTTCTGCTTAAATAAAATCTGATTAAATAATATTATTTTAATAA
76012916 AAAATACAACTCCTACTCTAATTGAAGAGTGAGG
131 AAAATACAACTCCTACTCTAATTGAAGAGTGAGG
76012950 GGCGGTGACA
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 164 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (164 bp):
ATACTTTCTGGCAAAGCGACGATGTATGAAAAAATGATTGTAATTAAGTTAATCGATAGTCTCTA
TTTATAAAGAAAAGTACTAGAGTTCTGCTTAAATAAAATCTGATTAAATAATATTATTTTAATAA
AAAATACAACTCCTACTCTAATTGAAGAGTGAGG
Found at i:76013175 original size:17 final size:17
Alignment explanation
Indices: 76013129--76013180 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
76013119 TATTATTTAT
* *
76013129 TTAACCAATTAATTTAA
1 TTAATCAATTAAATTAA
* *
76013146 TTAATTAACTAAATTAA
1 TTAATCAATTAAATTAA
*
76013163 TTACTCAATTAAA-TAA
1 TTAATCAATTAAATTAA
76013179 TT
1 TT
76013181 TTCTCAACAC
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 5 0.18
17 23 0.82
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAATCAATTAAATTAA
Found at i:76016750 original size:15 final size:15
Alignment explanation
Indices: 76016730--76016758 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76016720 TTGATTAAAA
76016730 TGTAAGTATTTATGC
1 TGTAAGTATTTATGC
76016745 TGTAAGTATTTATG
1 TGTAAGTATTTATG
76016759 TTGTCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTAAGTATTTATGC
Found at i:76018537 original size:24 final size:23
Alignment explanation
Indices: 76018488--76018537 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
76018478 ATAAAGTAAT
* *
76018488 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
76018511 TATATTATGATTTTTATTAAT-TCA
1 TATA-TATGATTTTTA-TAATATCA
76018535 TAT
1 TAT
76018538 TTTAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 15 0.65
25 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:76018633 original size:26 final size:27
Alignment explanation
Indices: 76018562--76018659 Score: 76
Period size: 26 Copynumber: 3.6 Consensus size: 27
76018552 TAAGAATGTT
76018562 ATTAAATTATATATTATTTTATTAAAT-TG
1 ATTAAATTATAT-TTA-TTTA-TAAATATG
* * *
76018591 TATTTAATAATACTTATGTTA-AAATATG
1 -ATTAAATTATATTTAT-TTATAAATATG
* * *
76018619 ATTAAATT-TATTTATTTATTATTATT
1 ATTAAATTATATTTATTTATAAATATG
76018645 ATTAAATTATATTTA
1 ATTAAATTATATTTA
76018660 ATAATAATTT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
25 3 0.05
26 18 0.33
27 16 0.29
28 3 0.05
29 6 0.11
30 9 0.16
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (27 bp):
ATTAAATTATATTTATTTATAAATATG
Found at i:76018672 original size:26 final size:26
Alignment explanation
Indices: 76018619--76018700 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
76018609 TTAAAATATG
* * *
76018619 ATTAAATTTATTTATTTATTATTATT
1 ATTAAATTTATTTAATAATAATTATT
76018645 ATTAAATTATATTTAATAATAATT-TT
1 ATTAAATT-TATTTAATAATAATTATT
**
76018671 ATTAAAATTTA-AAAATAATAATTATCT
1 ATT-AAATTTATTTAATAATAATTAT-T
76018698 ATT
1 ATT
76018701 TAAAAAATTC
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 10 0.21
26 16 0.34
27 21 0.45
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (26 bp):
ATTAAATTTATTTAATAATAATTATT
Found at i:76018860 original size:16 final size:16
Alignment explanation
Indices: 76018839--76018889 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
76018829 TGAATTATTG
*
76018839 ATTACAGGTCTATT-C
1 ATTACAGCTCTATTAC
76018854 TATTACAGCTCTATTAC
1 -ATTACAGCTCTATTAC
*
76018871 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTAC
76018887 ATT
1 ATT
76018890 CCTCCCAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 31 0.97
17 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (16 bp):
ATTACAGCTCTATTAC
Found at i:76022936 original size:51 final size:51
Alignment explanation
Indices: 76022859--76023006 Score: 233
Period size: 51 Copynumber: 2.9 Consensus size: 51
76022849 TGGATACACG
* * * *
76022859 GTGGCCTTTACATAGTACCACCCTTGTGGCCAAAGCTATTTTATTCACAAA
1 GTGGCATTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
76022910 GTGGCATTCACCTAGTACCACACTTGTGTCCAAAGCTATTTTATTCACGAA
1 GTGGCATTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
76022961 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCATTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
76023007 CTAAGGTTCA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 89 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (51 bp):
GTGGCATTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:76023067 original size:28 final size:28
Alignment explanation
Indices: 76023030--76023124 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
76023020 GGGAAATTTC
76023030 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
76023058 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
76023086 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
76023110 TCAGTTAGCACAATG
1 TCACTTAGCACAATG
76023125 TCATATCCTA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
24 21 0.36
28 38 0.64
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:76025444 original size:25 final size:25
Alignment explanation
Indices: 76025416--76025465 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
76025406 CCTAATGGGT
*
76025416 TTCAGTTCAGCTCTTTCAAGTTTTA
1 TTCAGTTCAGCTCTCTCAAGTTTTA
76025441 TTCAGTTCAGCTCTCTCAAGTTTTA
1 TTCAGTTCAGCTCTCTCAAGTTTTA
76025466 GTTTAACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (25 bp):
TTCAGTTCAGCTCTCTCAAGTTTTA
Found at i:76027499 original size:60 final size:61
Alignment explanation
Indices: 76027406--76027539 Score: 184
Period size: 60 Copynumber: 2.2 Consensus size: 61
76027396 GAATCTGTTA
* *
76027406 GTAAAAAATAAAAAGTAAAAATCACTAGCAACTATTTTCTACTTTATTTTAATT-TTTGAT
1 GTAAAAAATAAAAAATAAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
* * * *
76027466 GTAAAAAATAAAAAATAAAAAAT-ACTTGCAACTATTTTCAATTTTATTTTTATTCTTTTAT
1 GTAAAAAATAAAAAAT-AAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
76027527 GTAAAAAA-AAAAA
1 GTAAAAAATAAAAA
76027540 GACAACAAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
60 47 0.71
61 19 0.29
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (61 bp):
GTAAAAAATAAAAAATAAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
Done.