Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 254 of 378
Found at i:76044187 original size:18 final size:19
Alignment explanation
Indices: 76044153--76044189 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
76044143 AGCACCTCGA
*
76044153 CCCCTCCCACGACCACCAG
1 CCCCTCCAACGACCACCAG
76044172 CCCCTCCAAC-ACCACCAG
1 CCCCTCCAACGACCACCAG
76044190 ATGCACCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.62, G:0.08, T:0.05
Consensus pattern (19 bp):
CCCCTCCAACGACCACCAG
Found at i:76046370 original size:34 final size:34
Alignment explanation
Indices: 76046304--76046382 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
76046294 GAACTCGAAC
* * * *
76046304 CCTTGAACCTTAAATTTGAGTCATGAACCCCAAA
1 CCTTGAACCTTAAATTTAAATCATCAAACCCAAA
*
76046338 CTTTGAACCTTAAACTTTAAAT-ATCAAACCCAAA
1 CCTTGAACCTTAAA-TTTAAATCATCAAACCCAAA
*
76046372 CCTTAAACCTT
1 CCTTGAACCTT
76046383 GAGATTTGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
34 32 0.86
35 5 0.14
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (34 bp):
CCTTGAACCTTAAATTTAAATCATCAAACCCAAA
Found at i:76046407 original size:15 final size:15
Alignment explanation
Indices: 76046387--76046415 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76046377 AACCTTGAGA
76046387 TTTGGGGTTCAAGGG
1 TTTGGGGTTCAAGGG
76046402 TTTGGGGTTCAAGG
1 TTTGGGGTTCAAGG
76046416 TTCAAGGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.45, T:0.34
Consensus pattern (15 bp):
TTTGGGGTTCAAGGG
Found at i:76047539 original size:18 final size:18
Alignment explanation
Indices: 76047516--76047552 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76047506 TATAGTTTGG
* *
76047516 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCAAAT
76047534 TATTCGAGTTATTCAAAT
1 TATTCGAGTTATTCAAAT
76047552 T
1 T
76047553 CAAAAACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:76048953 original size:11 final size:11
Alignment explanation
Indices: 76048937--76048963 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
76048927 CTAAAAATAC
76048937 ATTAATTAAAA
1 ATTAATTAAAA
76048948 ATTAATTAAAA
1 ATTAATTAAAA
76048959 ATTAA
1 ATTAA
76048964 ATGCGCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
ATTAATTAAAA
Found at i:76049162 original size:15 final size:15
Alignment explanation
Indices: 76049142--76049174 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
76049132 TATAATTGTG
76049142 AAGGAAAAGAAAGAA
1 AAGGAAAAGAAAGAA
76049157 AAGGAAAAGAAAGAA
1 AAGGAAAAGAAAGAA
76049172 AAG
1 AAG
76049175 CTTAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAGGAAAAGAAAGAA
Found at i:76050732 original size:5 final size:5
Alignment explanation
Indices: 76050718--76050809 Score: 103
Period size: 5 Copynumber: 18.4 Consensus size: 5
76050708 AAATTAAAGT
* * * *
76050718 ATATC TTATC ATATC ATAAC ATATC GTAAC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* * * * *
76050768 ATATC ATATC ATATC ATATT GTAAC AAAAC ATATC ATATC AT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC AT
76050810 GTCCTACCCC
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
5 71 1.00
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.37
Consensus pattern (5 bp):
ATATC
Found at i:76053414 original size:29 final size:27
Alignment explanation
Indices: 76053374--76053478 Score: 86
Period size: 29 Copynumber: 3.7 Consensus size: 27
76053364 AATATGATTG
*
76053374 GGGCCTAATGGGCCATATGAAGGTGAATT
1 GGGCCTAGTGGGCCATATGAA--TGAATT
* *
76053403 GGGCCTAGTGGGCCATAAGAATATGAACT
1 GGGCCTAGTGGGCCATATG-A-ATGAATT
* *
76053432 GGGCC-AGATGGGCCATTTGAATAAGATT
1 GGGCCTAG-TGGGCCATATGAATGA-ATT
* *
76053460 GGACCTAGTGGGCTATATG
1 GGGCCTAGTGGGCCATATG
76053479 CATGTATGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
27 3 0.05
28 18 0.30
29 38 0.62
30 1 0.02
31 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (27 bp):
GGGCCTAGTGGGCCATATGAATGAATT
Found at i:76056988 original size:21 final size:22
Alignment explanation
Indices: 76056956--76056999 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
76056946 TTTATCTAAA
76056956 TATAATTTATTGAAATCATAAT
1 TATAATTTATTGAAATCATAAT
* *
76056978 TATAA-TTATTGTAATTATAAT
1 TATAATTTATTGAAATCATAAT
76056999 T
1 T
76057000 TACGATCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
TATAATTTATTGAAATCATAAT
Found at i:76057069 original size:39 final size:38
Alignment explanation
Indices: 76056976--76057073 Score: 133
Period size: 39 Copynumber: 2.6 Consensus size: 38
76056966 TGAAATCATA
* *
76056976 ATTATAATTATTGTAATTATAATTTACGATCGAATATT
1 ATTATAATTATTGTAATTATAATTTACGATCAAACATT
* * *
76057014 ATTATAATTATTGTAATTGTAATTTTTCGGTCAAACATT
1 ATTATAATTATTGTAATTATAA-TTTACGATCAAACATT
*
76057053 ATTATAATTATGGTAATTATA
1 ATTATAATTATTGTAATTATA
76057074 GTAATTATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
38 21 0.40
39 31 0.60
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (38 bp):
ATTATAATTATTGTAATTATAATTTACGATCAAACATT
Found at i:76063724 original size:41 final size:42
Alignment explanation
Indices: 76063638--76063738 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 42
76063628 AATACTCGAT
* ** *
76063638 GTCTCGTACACTAAGTGCCAACACATAGCTGAAGCTATTATA
1 GTCTCGCACACTAAGTGCCAACACATAGCCAAAGCTATTACA
**
76063680 GTCTCGCACACTAAGTGCC-TTACATAGCCAAAGCTATCT-CA
1 GTCTCGCACACTAAGTGCCAACACATAGCCAAAGCTAT-TACA
**
76063721 GTCTTACACACTAAGTGC
1 GTCTCGCACACTAAGTGC
76063739 TATATATAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 31 0.62
42 19 0.38
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (42 bp):
GTCTCGCACACTAAGTGCCAACACATAGCCAAAGCTATTACA
Found at i:76076125 original size:24 final size:24
Alignment explanation
Indices: 76076092--76076250 Score: 81
Period size: 24 Copynumber: 6.6 Consensus size: 24
76076082 CCAACATTGT
* *
76076092 CACTAAGTGTGCGGATTTGAATGG
1 CACTATGTGTGCGAATTTGAATGG
* * * *
76076116 CACTATGTGTGTGAAATCGATTGG
1 CACTATGTGTGCGAATTTGAATGG
* * *
76076140 CACTATGTATGCTG-GTTTGAATGT
1 CACTATGTGTGC-GAATTTGAATGG
* ** * * * *
76076164 CAATAAATGAGTGAATTTCCAA-AG
1 CACTATGTGTGCGAATTT-GAATGG
* *
76076188 CACTATGTGTGCG-GTTTAGCATGG
1 CACTATGTGTGCGAATTT-GAATGG
* * *
76076212 CACTATGTGTGTGAATTTGATTAG
1 CACTATGTGTGCGAATTTGAATGG
76076236 CACTATGTGTGCGAA
1 CACTATGTGTGCGAA
76076251 ATCGGTTGAG
Statistics
Matches: 91, Mismatches: 39, Indels: 10
0.65 0.28 0.07
Matches are distributed among these distances:
23 5 0.05
24 80 0.88
25 6 0.07
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.33
Consensus pattern (24 bp):
CACTATGTGTGCGAATTTGAATGG
Found at i:76076159 original size:48 final size:47
Alignment explanation
Indices: 76076092--76076248 Score: 136
Period size: 48 Copynumber: 3.3 Consensus size: 47
76076082 CCAACATTGT
* * * *
76076092 CACTAAGTGTGCGGATTTGAATGGCACTATGTGTGTGAAATCGATTGG
1 CACTATGTATGCGG-TTTGAATGGCACTATGTGTGTGAATTCGATTAG
* * ** * * *
76076140 CACTATGTATGCTGGTTTGAATGTCAATAAATGAGTGAATTTCCA-AAG
1 CACTATGTATGC-GGTTTGAATGGCACTATGTGTGTGAA-TTCGATTAG
* * *
76076188 CACTATGTGTGCGGTTTAGCATGGCACTATGTGTGTGAATTTGATTAG
1 CACTATGTATGCGGTTT-GAATGGCACTATGTGTGTGAATTCGATTAG
*
76076236 CACTATGTGTGCG
1 CACTATGTATGCG
76076249 AAATCGGTTG
Statistics
Matches: 84, Mismatches: 21, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
47 8 0.10
48 71 0.85
49 5 0.06
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (47 bp):
CACTATGTATGCGGTTTGAATGGCACTATGTGTGTGAATTCGATTAG
Found at i:76076861 original size:2 final size:2
Alignment explanation
Indices: 76076854--76076905 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
76076844 TTAATGAATG
*
76076854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
76076896 AT AT AC AT AT
1 AT AT AT AT AT
76076906 GTTTGAGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:76081228 original size:49 final size:49
Alignment explanation
Indices: 76081167--76081569 Score: 647
Period size: 49 Copynumber: 8.3 Consensus size: 49
76081157 ATGTATGAGA
76081167 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76081216 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76081265 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76081314 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76081363 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76081412 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
76081459 TGTATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
76081508 --TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76081555 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
76081570 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 91 0.27
48 7 0.02
49 240 0.71
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:76085820 original size:33 final size:34
Alignment explanation
Indices: 76085743--76085827 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
76085733 GTATTAGTTA
* * *
76085743 GGCCTTAGCCCAATACAGTAACAATAGAAGTCTG
1 GGCCTAAGCCCATTACAGTAACAATAGAAGTCGG
* * *
76085777 GGCCTGAGCCCATTACAGTAACAGTAGCAGT-GG
1 GGCCTAAGCCCATTACAGTAACAATAGAAGTCGG
*
76085810 GGCCTAAGCCCATAACAG
1 GGCCTAAGCCCATTACAG
76085828 AATTAGTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 17 0.39
34 27 0.61
ACGTcount: A:0.32, C:0.26, G:0.25, T:0.18
Consensus pattern (34 bp):
GGCCTAAGCCCATTACAGTAACAATAGAAGTCGG
Found at i:76087808 original size:40 final size:40
Alignment explanation
Indices: 76087764--76087854 Score: 94
Period size: 40 Copynumber: 2.3 Consensus size: 40
76087754 GTGCTAAGTG
* *
76087764 ACTATATCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTC
1 ACTATATCCGGACTACG-TCCCGAAGGCATTCGAGCGAGTC
* * * *
76087804 ACTATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 ACTATATCCGGACTACGTCCCGAAGGCATTCGAGCGAGTC
**
76087844 GTTATATCCGG
1 ACTATATCCGG
76087855 TTAAATTCCG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
ACTATATCCGGACTACGTCCCGAAGGCATTCGAGCGAGTC
Found at i:76094070 original size:24 final size:24
Alignment explanation
Indices: 76094034--76094195 Score: 96
Period size: 24 Copynumber: 6.8 Consensus size: 24
76094024 GAGCCAACAT
* *
76094034 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
76094058 TGGCACTATGTGTGTGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* *
76094082 TGGCACTATGTATGCTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** * * *
76094106 TGTCAATAAATGAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * *
76094131 -AGCACTATGTGTGC-AGTTTAGCA
1 TGGCACTATGTGTGCGAATTT-GAA
*
76094154 TGGCACTATGTGTGCGAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
76094178 TAGCACTATGTGTGCGAA
1 TGGCACTATGTGTGCGAA
76094196 ATCAGTTGAG
Statistics
Matches: 96, Mismatches: 37, Indels: 10
0.67 0.26 0.07
Matches are distributed among these distances:
23 6 0.06
24 83 0.86
25 7 0.07
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:76094807 original size:2 final size:2
Alignment explanation
Indices: 76094800--76094840 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
76094790 TTAATGAATG
*
76094800 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76094841 GTTTGAGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:76105539 original size:40 final size:38
Alignment explanation
Indices: 76105409--76105556 Score: 111
Period size: 40 Copynumber: 3.8 Consensus size: 38
76105399 TGAGAAATTG
* * *
76105409 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
76105449 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
76105486 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
76105526 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
76105557 CTTGGTACGG
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.05
38 2 0.02
39 3 0.04
40 75 0.89
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:76122288 original size:26 final size:26
Alignment explanation
Indices: 76122249--76122299 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
76122239 CCAACGCACC
* * * *
76122249 AATATCGTAGCAAAGCTGCTAGTAAT
1 AATATCGCAACAAAGATGCCAGTAAT
76122275 AATATCGCAACAAAGATGCCAGTAA
1 AATATCGCAACAAAGATGCCAGTAA
76122300 CAGTAACACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.22
Consensus pattern (26 bp):
AATATCGCAACAAAGATGCCAGTAAT
Found at i:76124024 original size:27 final size:28
Alignment explanation
Indices: 76123994--76124063 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
76123984 ATAATAAGTC
*
76123994 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
76124021 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
76124049 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76124064 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76132146 original size:44 final size:41
Alignment explanation
Indices: 76132051--76132150 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
76132041 CAAGTGTATT
* * *
76132051 TGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATATGA
1 TGGCACTAAGTGTGCAATCCAAAATAGCTTCGGCTATAAGA
* * * *
76132092 -GGCACCAAGTGTGCAATACCGAGATAGCTTCGGTTAATAGAGA
1 TGGCACTAAGTGTGCAAT-CCAAAATAGCTTCGGCT-ATA-AGA
76132135 TGGCACTAAGTGTGCA
1 TGGCACTAAGTGTGCA
76132151 GAATTGTTCT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
40 15 0.32
41 13 0.28
42 3 0.06
43 2 0.04
44 14 0.30
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (41 bp):
TGGCACTAAGTGTGCAATCCAAAATAGCTTCGGCTATAAGA
Found at i:76139675 original size:46 final size:47
Alignment explanation
Indices: 76139571--76139690 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 47
76139561 TGTCTTCAAC
** *
76139571 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATCTAAT
1 ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCCA-ATATATCTAAT
* *
76139619 ATGGGCTTACATGGCTTATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATCTAAT
* *
76139665 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTTATTCCTGTC
76139691 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 33 0.52
48 31 0.48
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:76144888 original size:12 final size:12
Alignment explanation
Indices: 76144871--76144898 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
76144861 CACACACGTT
76144871 CGTGTGCTAGGC
1 CGTGTGCTAGGC
76144883 CGTGTGCTAGGC
1 CGTGTGCTAGGC
76144895 CGTG
1 CGTG
76144899 CCAAAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:76146127 original size:40 final size:41
Alignment explanation
Indices: 76145989--76146135 Score: 165
Period size: 41 Copynumber: 3.6 Consensus size: 41
76145979 CTTGATATCA
* * **
76145989 CGCACACTAAGTGCCAATACATAGCTGAAGTTATTTTAATCT
1 CGCACACTAAGTGCC-ATACATAGCCGAAGCTATTCCAATCT
* * *
76146031 CGCACATTAAGTGCCTTACATAGCCAAAGCTA-TCTCAATCT
1 CGCACACTAAGTGCCATACATAGCCGAAGCTATTC-CAATCT
* *
76146072 CACACACTAAGTGCCATATATAGCCGAAGCTATTCCAAAT-T
1 CGCACACTAAGTGCCATACATAGCCGAAGCTATTCC-AATCT
76146113 -GCACACTAAGTGCCATACATAGC
1 CGCACACTAAGTGCCATACATAGC
76146136 TGAATTGCCG
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 22 0.25
41 47 0.53
42 19 0.22
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (41 bp):
CGCACACTAAGTGCCATACATAGCCGAAGCTATTCCAATCT
Found at i:76153679 original size:40 final size:41
Alignment explanation
Indices: 76153544--76153691 Score: 122
Period size: 41 Copynumber: 3.6 Consensus size: 41
76153534 AATATCACAG
* * * ** *
76153544 ACACTAAGTGCTAATACATAGCTGAAGCCAT-TTTAAACTCAC
1 ACACTAAGTGC-CATACATAGCCGAAGCTATCTCCAAA-TCGC
* * **
76153586 ACAC-AATGTGCCTTACATAGCCGAAGCTATCTCGATCTCGC
1 ACACTAA-GTGCCATACATAGCCGAAGCTATCTCCAAATCGC
* *
76153627 ACACTAAGTGCCATATATAGCCGAAGCTAT-TCCAAATTGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCCAAATCGC
* *
76153667 ACACTAGGTGCCATACATAGTCGAA
1 ACACTAAGTGCCATACATAGCCGAA
76153692 TTTTCGTCAA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
40 28 0.33
41 45 0.53
42 12 0.14
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (41 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATCTCCAAATCGC
Found at i:76153703 original size:40 final size:39
Alignment explanation
Indices: 76153585--76153691 Score: 99
Period size: 40 Copynumber: 2.7 Consensus size: 39
76153575 TTTAAACTCA
* * ** *
76153585 CACAC-AATGTGCCTTACATAGCCGAAGCTATCTCGATCTCG
1 CACACTAA-GTGCCATACATAGCCGAA-CTAT-TCCAAATTG
*
76153626 CACACTAAGTGCCATATATAGCCGAAGCTATTCCAAATTG
1 CACACTAAGTGCCATACATAGCCGAA-CTATTCCAAATTG
* *
76153666 CACACTAGGTGCCATACATAGTCGAA
1 CACACTAAGTGCCATACATAGCCGAA
76153692 TTTTCGTCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
40 28 0.50
41 26 0.46
42 2 0.04
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (39 bp):
CACACTAAGTGCCATACATAGCCGAACTATTCCAAATTG
Found at i:76157017 original size:27 final size:27
Alignment explanation
Indices: 76156987--76157113 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
76156977 CCCTAATTGA
*
76156987 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
76157014 TAAAATGATTGTTTTGCCCATATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
76157041 T-AAATGACTGTTTTTCACTTATATAG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
76157067 AAAAAT-AGTTGTTTTGCCTTTATATGG
1 TAAAATGA-CTGTTTTGCCCTTATATGG
** *
76157094 TAAGGTGACTGTTATGCCCT
1 TAAAATGACTGTTTTGCCCT
76157114 ATGTGATGTA
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
26 21 0.27
27 55 0.71
28 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:76157051 original size:53 final size:53
Alignment explanation
Indices: 76156989--76157118 Score: 147
Period size: 53 Copynumber: 2.5 Consensus size: 53
76156979 CTAATTGATA
*
76156989 AAATGACTGTTTTGCCCTTATGTGGTAAAAT-GATTGTTTTGCCCATATATGGT
1 AAATGACTGTTTTGCCCTTATGTGGAAAAATAG-TTGTTTTGCCCATATATGGT
* * * * **
76157042 AAATGACTGTTTTTCACTTATATAGAAAAATAGTTGTTTTGCCTTTATATGGT
1 AAATGACTGTTTTGCCCTTATGTGGAAAAATAGTTGTTTTGCCCATATATGGT
* *
76157095 AAGGTGACTGTTATGCCC-TATGTG
1 AA-ATGACTGTTTTGCCCTTATGTG
76157119 ATGTATATAT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
53 50 0.81
54 12 0.19
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (53 bp):
AAATGACTGTTTTGCCCTTATGTGGAAAAATAGTTGTTTTGCCCATATATGGT
Found at i:76160898 original size:27 final size:27
Alignment explanation
Indices: 76160868--76160935 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
76160858 AAAATAATTA
*
76160868 TTTTACCCTTATGTGGTAAAATGACTG
1 TTTTGCCCTTATGTGGTAAAATGACTG
** *
76160895 TTTTGCCCTTATGTGGTAAGGTGGCTG
1 TTTTGCCCTTATGTGGTAAAATGACTG
76160922 TTTTGCCC-TATGTG
1 TTTTGCCCTTATGTG
76160936 ATGTATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 6 0.16
27 31 0.84
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTG
Found at i:76168803 original size:40 final size:40
Alignment explanation
Indices: 76168743--76168958 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
76168733 TATTCGAATG
*
76168743 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
76168783 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
76168823 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
76168863 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
76168903 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
76168943 ATATCC-GGCTAA-ATCC
1 ATATCCGGGCTAAGATCC
76168959 CAAGATACTT
Statistics
Matches: 155, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.02
39 7 0.05
40 140 0.90
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:76169230 original size:22 final size:22
Alignment explanation
Indices: 76169190--76169231 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
76169180 GAATGTGCAT
*
76169190 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
76169212 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
76169232 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:76177052 original size:40 final size:41
Alignment explanation
Indices: 76176992--76177211 Score: 289
Period size: 40 Copynumber: 5.6 Consensus size: 41
76176982 TATTCGAATG
*
76176992 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
76177032 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
76177072 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
76177112 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
76177152 ATAT-CGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
76177191 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
76177212 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.01
39 46 0.29
40 110 0.69
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76177478 original size:22 final size:22
Alignment explanation
Indices: 76177438--76177479 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
76177428 GAATGTGCAT
*
76177438 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
76177460 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
76177480 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:76179965 original size:16 final size:17
Alignment explanation
Indices: 76179944--76179975 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76179934 TAGTTAGAGT
76179944 AAACTG-AAACTATAGG
1 AAACTGAAAACTATAGG
76179960 AAACTGAAAACTATAG
1 AAACTGAAAACTATAG
76179976 TGAGACCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (17 bp):
AAACTGAAAACTATAGG
Found at i:76186456 original size:26 final size:26
Alignment explanation
Indices: 76186420--76186494 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
76186410 ATATACTGAT
** * *
76186420 ACTGGTAGCTCTGTTGCGTTATTGTC
1 ACTGGTAGCTCTACTGCGATATTATC
*
76186446 ACTGGTAGCTCTACTGCGATATTATT
1 ACTGGTAGCTCTACTGCGATATTATC
*
76186472 ACTGGTAGCTTTACTGCGATATT
1 ACTGGTAGCTCTACTGCGATATT
76186495 GGTGTGTTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (26 bp):
ACTGGTAGCTCTACTGCGATATTATC
Found at i:76188375 original size:48 final size:48
Alignment explanation
Indices: 76188045--76188375 Score: 294
Period size: 48 Copynumber: 6.9 Consensus size: 48
76188035 GTGAATTGCC
* * * * *
76188045 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGT--TGAGGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATG-GCT
* * * * **
76188092 CGATGCCATATCCCAGACATGGTCTTACACTAGCTCTTATCTCAAAGCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCT
*
76188141 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCT
* * * * * *
76188189 AATGCCATGTCCCAGACATGGTCTTACACTAGCGCACCTATCAAT-ACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGCT
* * * * * * *
76188237 AATACCATGTCCGAAACATGGCCTTACATTGGCTCTCAT-TACATTGCCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGGCT
* * *
76188286 -ATGCCATTTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCT
* * * *
76188333 GATGCCATATCCCAGACATGGTCTTACATTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
76188376 CCCAAATGTC
Statistics
Matches: 228, Mismatches: 47, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
47 6 0.03
48 216 0.95
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCT
Found at i:76190234 original size:44 final size:44
Alignment explanation
Indices: 76190180--76190271 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
76190170 AAAAACATCA
* *
76190180 ATTAACTAGTTTAATCAATGTACGAACTTACCTACTCAAAAATG
1 ATTAACTAGTTTAATCAACGTACAAACTTACCTACTCAAAAATG
*
76190224 ATTAACTAGTTTAATCAACGTACAAACTTACCTACTTAAAAATG
1 ATTAACTAGTTTAATCAACGTACAAACTTACCTACTCAAAAATG
76190268 ATTA
1 ATTA
76190272 CAAACATGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (44 bp):
ATTAACTAGTTTAATCAACGTACAAACTTACCTACTCAAAAATG
Found at i:76194239 original size:20 final size:21
Alignment explanation
Indices: 76194211--76194249 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
76194201 GTTACATCTC
76194211 ACGAACTCGG-ACTCAAATCA
1 ACGAACTCGGAACTCAAATCA
*
76194231 ACGAGCTCGGAACTCAAAT
1 ACGAACTCGGAACTCAAAT
76194250 ATCTTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.15
Consensus pattern (21 bp):
ACGAACTCGGAACTCAAATCA
Found at i:76197355 original size:33 final size:33
Alignment explanation
Indices: 76197316--76197381 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76197306 GTTCCAAATC
76197316 ATGAGTCAGATAATTCCTTTCGTAAGGTTTCAA
1 ATGAGTCAGATAATTCCTTTCGTAAGGTTTCAA
*
76197349 ATGAGTCGGATAATTCCTTTCGTAAGGTTTCAA
1 ATGAGTCAGATAATTCCTTTCGTAAGGTTTCAA
76197382 CTGCCTCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (33 bp):
ATGAGTCAGATAATTCCTTTCGTAAGGTTTCAA
Found at i:76199889 original size:17 final size:17
Alignment explanation
Indices: 76199867--76199899 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76199857 ATTCATGAAA
76199867 TACCCGAATAGAATTCG
1 TACCCGAATAGAATTCG
76199884 TACCCGAATAGAATTC
1 TACCCGAATAGAATTC
76199900 TCAAGCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (17 bp):
TACCCGAATAGAATTCG
Found at i:76205399 original size:40 final size:40
Alignment explanation
Indices: 76205362--76205547 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
76205352 GCTACTCGTT
*
76205362 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76205402 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
76205442 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
76205482 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76205523 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76205548 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76207497 original size:27 final size:27
Alignment explanation
Indices: 76207467--76207606 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
76207457 ATTACCGTTT
* * *
76207467 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
76207494 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
76207521 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
76207548 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
76207575 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCAGTTT-ATAAAATTACCAAAA
76207602 TACCC
1 TACCC
76207607 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
27 90 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:76207525 original size:54 final size:54
Alignment explanation
Indices: 76207469--76207606 Score: 152
Period size: 54 Copynumber: 2.5 Consensus size: 54
76207459 TACCGTTTTA
*
76207469 CCCTCAATTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
1 CCCT-AATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** * * *
76207524 CCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATAC
1 CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** *
76207578 CCATGGTTTGA-AAAATTACTAAAATACCC
1 CCCTAATTT-ACAAAATTACCAAAATACCC
76207607 CTGTAGGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
54 68 0.94
55 4 0.06
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
Found at i:76207619 original size:54 final size:54
Alignment explanation
Indices: 76207483--76207633 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
76207473 CAATTTACAG
* ** * * *
76207483 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* ** *
76207537 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* **
76207591 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
76207634 TTGTGGGGTA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:76207635 original size:81 final size:81
Alignment explanation
Indices: 76207483--76207635 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
76207473 CAATTTACAG
* **
76207483 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
76207548 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
76207564 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAATTACTAA
76207627 AATACCCTT
64 AATACCCTT
76207636 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:76207646 original size:26 final size:27
Alignment explanation
Indices: 76207589--76207649 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
76207579 CATGGTTTGA
76207589 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
76207616 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
76207643 -AAATTAC
1 AAAATTAC
76207650 CATTTTGCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:76207661 original size:27 final size:26
Alignment explanation
Indices: 76207631--76207693 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
76207621 TACTGAAATA
*
76207631 CCCTTGTGGGGTAAATTACCATTTTG
1 CCCTTGTGGGGTAAATGACCATTTTG
* * *
76207657 CCCCTAG-GGTGTTAAATGACTATTTTG
1 -CCCTTGTGG-GGTAAATGACCATTTTG
76207684 CCCTTGTGGG
1 CCCTTGTGGG
76207694 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (26 bp):
CCCTTGTGGGGTAAATGACCATTTTG
Found at i:76208301 original size:28 final size:28
Alignment explanation
Indices: 76208269--76208327 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
76208259 GCGTAGATCA
76208269 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
76208297 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
76208325 CGA
1 CGA
76208328 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76216584 original size:40 final size:40
Alignment explanation
Indices: 76216547--76216731 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
76216537 GCTACTCGTT
*
76216547 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76216587 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
76216627 CAAATGCCTTC-GGATCTTAG-TCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
76216666 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76216707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76216732 CATCATTCGA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
39 41 0.31
40 77 0.59
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76216725 original size:79 final size:80
Alignment explanation
Indices: 76216547--76216730 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 80
76216537 GCTACTCGTT
*
76216547 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
76216612 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* **
76216627 CAAATGCCTTC-GGATCTTAG-TCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
76216688 CGGATATAGTCACTTAGCA
63 CGGATATAGTAAC-TAGCA
76216707 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
76216731 ACATCATTCG
Statistics
Matches: 90, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 31 0.34
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:76221595 original size:40 final size:40
Alignment explanation
Indices: 76221541--76221658 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
76221531 CGGATGTAAC
*
76221541 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
76221581 AACCCGCACGAATGCCTTTGGGACTTAACTCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
76221621 AACCCGCACCAATGCCTTCGGGACTTAACCCGATTATA
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATA
76221659 TTTTTTTCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (40 bp):
AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:76224084 original size:14 final size:14
Alignment explanation
Indices: 76224051--76224100 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
76224041 GAGAAGGAGC
*
76224051 AGAGAAGGAAAAGT
1 AGAGAAAGAAAAGT
*
76224065 AG-GAAAGAAAAAT
1 AGAGAAAGAAAAGT
*
76224078 AGAGAAAGAGAAGT
1 AGAGAAAGAAAAGT
76224092 A-AGAAAGAA
1 AGAGAAAGAA
76224101 CAGAAAGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (14 bp):
AGAGAAAGAAAAGT
Found at i:76224091 original size:27 final size:27
Alignment explanation
Indices: 76224051--76224146 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
76224041 GAGAAGGAGC
* *
76224051 AGAGAAGGAAAAGTAGGAAAGAAAAAT
1 AGAGAAAGAGAAGTAGGAAAGAAAAAT
*
76224078 AGAGAAAGAGAAGTAAGAAAGAACAGAA-
1 AGAGAAAGAGAAGTAGGAAAGAA-A-AAT
* ***
76224106 AGGGAAA-AGAAACGGGAAAG-AAAAT
1 AGAGAAAGAGAAGTAGGAAAGAAAAAT
76224131 AGA-AAAGGAGAAGTAG
1 AGAGAAA-GAGAAGTAG
76224147 CTGGATGAAG
Statistics
Matches: 52, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
24 5 0.10
25 3 0.06
26 6 0.12
27 29 0.56
28 7 0.13
29 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.31, T:0.05
Consensus pattern (27 bp):
AGAGAAAGAGAAGTAGGAAAGAAAAAT
Found at i:76225998 original size:40 final size:40
Alignment explanation
Indices: 76225952--76226171 Score: 304
Period size: 40 Copynumber: 5.5 Consensus size: 40
76225942 GCTCGATTGT
* *
76225952 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGC
* * * *
76225992 CCTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
*
76226032 CTTCGGGA-ATTAACTCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
76226072 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
*
76226112 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
76226152 CTTCGGGA-ATTAACCCGGAT
1 CTTCGGGACA-TAACCCGGAT
76226172 ACCATTCAAA
Statistics
Matches: 163, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 161 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:76226071 original size:80 final size:80
Alignment explanation
Indices: 76225952--76226171 Score: 336
Period size: 80 Copynumber: 2.8 Consensus size: 80
76225942 GCTCGATTGT
* * * * * *
76225952 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAAATGCCCTCGGGACTTAACCCGGTTTTG
1 CTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTA
76226015 GTAACTCGCACAAATGC
64 GTAACTCGCACAAATGC
*
76226032 CTTCGGGAATTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
76226097 AACTCGCACAAATGC
66 AACTCGCACAAATGC
*
76226112 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
76226172 ACCATTCAAA
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 1 0.01
80 126 0.98
81 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
AACTCGCACAAATGC
Found at i:76226139 original size:120 final size:120
Alignment explanation
Indices: 76225952--76226171 Score: 354
Period size: 120 Copynumber: 1.8 Consensus size: 120
76225942 GCTCGATTGT
* * * *
76225952 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCCTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCCTCGGGACTTAACCCGGATTTAGT
*
76226017 AACTCGCACAAATGCCTTCGGGAATTAACTCGGATTTAGTAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
*
76226072 CTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CTTCGGGACA-TAACCCGG-TTATAGTAACTCGCACAAATGCCCTCGGGACTTAACCCGGATTTA
76226135 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
64 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
76226172 ACCATTCAAA
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 1 0.01
120 89 0.97
121 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (120 bp):
CTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCCTCGGGACTTAACCCGGATTTAGT
AACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:76236026 original size:40 final size:40
Alignment explanation
Indices: 76235918--76236167 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
76235908 CGGGATTTAA
* * * * *
76235918 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76235958 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76235998 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76236038 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76236078 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76236118 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76236158 CCGGATATAT
1 CCGGATATAT
76236168 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76244224 original size:48 final size:46
Alignment explanation
Indices: 76244153--76244341 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 46
76244143 TTGCACAAAG
76244153 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAACTCGCCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCAACTCG-CACGAAT
76244201 GCCTTCGGGTCTTAGCCCGG--ATAT-A-T--CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATAACTCGCAACTCGCACGAAT
76244241 GCCTTCGGGTCTTAGCCCGG--ATAT-A-T---AACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATAACTCGCAACTCGCACGAAT
76244280 GCCTTC-GGTCTTAGCCCGG--ATAT-A-T-----CTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATAACTCGCAACTCGCACGAAT
76244316 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
76244342 TTCCAATGTT
Statistics
Matches: 138, Mismatches: 0, Indels: 15
0.90 0.00 0.10
Matches are distributed among these distances:
36 17 0.12
37 13 0.09
38 19 0.14
39 23 0.17
40 33 0.24
41 7 0.05
43 1 0.01
44 1 0.01
46 4 0.03
48 20 0.14
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (46 bp):
GCCTTCGGGTCTTAGCCCGGATATATAACTCGCAACTCGCACGAAT
Found at i:76244242 original size:40 final size:39
Alignment explanation
Indices: 76244187--76244341 Score: 271
Period size: 40 Copynumber: 4.0 Consensus size: 39
76244177 ATCAACTCGC
76244187 AACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 AACTCG-CACGAATGCCTTCGGGTCTTAGCCCGGATATAT
76244227 CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 -AACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
76244267 AACTCGCACGAATGCCTTC-GGTCTTAGCCCGGATATAT
1 AACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
76244305 --CTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 AACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
76244342 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
36 17 0.15
37 19 0.17
38 19 0.17
39 19 0.17
40 33 0.29
41 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (39 bp):
AACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
Found at i:76244255 original size:88 final size:79
Alignment explanation
Indices: 76244101--76244341 Score: 283
Period size: 88 Copynumber: 3.0 Consensus size: 79
76244091 GGATATAGCG
* * * * * * * *
76244101 ACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGGCCTTCGGGTCTT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-AT-ACTCGCACGAATGCCTTCGGGTCTT
76244166 AGCCCGGATATATCAACTCGCA
64 AGCCCGGATATAT--A-T---A
76244188 ACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCT
1 ACTCG-CACGAATGCCTTCGGGTCTTAGCCCGGATATAT--ACTCGCACGAATGCCTTCGGGTCT
76244253 TAGCCCGG--ATATATA
63 TAGCCCGGATATATATA
76244268 ACTCGCACGAATGCCTTC-GGTCTTAGCCCGGATATAT-CTCGCACGAATGCCTTCGGGTCTTAG
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATACTCGCACGAATGCCTTCGGGTCTTAG
76244331 CCCGGATATAT
66 CCCGGATATAT
76244342 TTCCAATGTT
Statistics
Matches: 141, Mismatches: 9, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
75 31 0.22
77 4 0.03
78 19 0.13
79 13 0.09
80 6 0.04
83 1 0.01
84 1 0.01
86 4 0.03
87 6 0.04
88 56 0.40
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATACTCGCACGAATGCCTTCGGGTCTTAG
CCCGGATATATATA
Found at i:76244324 original size:75 final size:78
Alignment explanation
Indices: 76244187--76244341 Score: 271
Period size: 75 Copynumber: 2.0 Consensus size: 78
76244177 ATCAACTCGC
76244187 AACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTC
1 AACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATAT--ACTCGCACGAATGCCTTCGGGTC
76244252 TTAGCCCGGATATAT
64 TTAGCCCGGATATAT
76244267 AACTCG-CACGAATGCCTTC-GGTCTTAGCCCGGATATAT-CTCGCACGAATGCCTTCGGGTCTT
1 AACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATATACTCGCACGAATGCCTTCGGGTCTT
76244329 AGCCCGGATATAT
66 AGCCCGGATATAT
76244342 TTCCAATGTT
Statistics
Matches: 75, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
75 37 0.49
78 19 0.25
79 13 0.17
80 6 0.08
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (78 bp):
AACTCGCCACGAATGCCTTCGGGTCTTAGCCCGGATATATACTCGCACGAATGCCTTCGGGTCTT
AGCCCGGATATAT
Found at i:76254555 original size:13 final size:13
Alignment explanation
Indices: 76254539--76254571 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76254529 TTTAATTAAA
*
76254539 TTAGTTAATTAGT
1 TTAGATAATTAGT
76254552 TTAGATAATTAGT
1 TTAGATAATTAGT
76254565 TTA-ATAA
1 TTAGATAA
76254572 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76258031 original size:15 final size:17
Alignment explanation
Indices: 76258001--76258032 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
76257991 ACTTGTATTC
76258001 ATATTGTCATTGAATTG
1 ATATTGTCATTGAATTG
76258018 ATATTGT-A-TGAATTG
1 ATATTGTCATTGAATTG
76258033 TTAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (17 bp):
ATATTGTCATTGAATTG
Found at i:76258214 original size:47 final size:45
Alignment explanation
Indices: 76258145--76258455 Score: 218
Period size: 47 Copynumber: 6.7 Consensus size: 45
76258135 TTTGTACGCT
* * *
76258145 AGTGTAAGACATATCTGGGACATGCTTCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGAGCC
* * *
76258191 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGAGCC
* * * * *
76258239 AGTGTAAGACATGTTTGGGACATGCTTCAGG-CATATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCCACA-GATGAGAGCC
*
76258285 AGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGAGCC
* * * * * * * *
76258332 AGTGTAAGACGTGTCCGGGACACGCATCAGCTA-AGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGAGCC
* * * * *
76258376 AGTGTAATACATGTCTGGGACATGCATCAGCACGCATATATGAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATC-G-GC-CACAGATGAGAGCC
76258424 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
76258456 TAATTTATCC
Statistics
Matches: 205, Mismatches: 42, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
43 4 0.02
44 28 0.14
45 3 0.01
46 46 0.22
47 64 0.31
48 35 0.17
49 20 0.10
50 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCC
Found at i:76265738 original size:40 final size:40
Alignment explanation
Indices: 76265692--76265875 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
76265682 CTTGCACAAG
* *
76265692 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76265732 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76265772 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
76265812 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
76265852 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76265876 CATTCGAATA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 114 0.92
41 9 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76272525 original size:39 final size:40
Alignment explanation
Indices: 76272425--76272615 Score: 185
Period size: 39 Copynumber: 4.8 Consensus size: 40
76272415 TCGAATGATG
* * *
76272425 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76272465 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76272505 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
76272544 CCCGGGTTAAGTCCCGAAGGCATTCG-GCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
76272584 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76272616 CGTTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 63 0.51
40 54 0.44
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76272565 original size:79 final size:81
Alignment explanation
Indices: 76272425--76272608 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
76272415 TCGAATGATG
* * *
76272425 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
76272489 CGTGCGAGTTAATA-AA
66 CG-GCGAGTCAATATAA
* **
76272505 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
76272567 TCGGCGAGTCACTATAA
65 TCGGCGAGTCAATATAA
**
76272584 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76272609 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 18 0.20
79 54 0.60
80 18 0.20
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGGCGAGTCAATATAA
Found at i:76278991 original size:40 final size:40
Alignment explanation
Indices: 76278946--76279075 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76278936 CGGAATACAA
76278946 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
76278986 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
76279026 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
76279066 CCGGATATAA
1 CCGGATATAA
76279076 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76282675 original size:40 final size:40
Alignment explanation
Indices: 76282629--76282813 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
76282619 CTTGCACAAG
* * *
76282629 GCCTTCGGGTCTTAGCCTGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76282669 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76282709 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
76282749 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAGA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAA-AT
*
76282790 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76282814 CATTCGAATA
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 91 0.75
41 28 0.23
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76286186 original size:43 final size:41
Alignment explanation
Indices: 76286118--76286239 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 41
76286108 TACCATACCA
* * *
76286118 ATGCCATATCCCAGATATGCTCTTACATGTAATCTTGTATCG
1 ATGCCATAGCCCAGATATGGTCTTACA-GTAATCTTATATCG
* ** *
76286160 ATGCCAATAGCCCA-ACTATTGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATAGCCCAGA-TATGGTCTTACAGTAA-TCTTATATCG
*
76286203 ATGCCATATCCCAGATATGGTCTTACACGTAATCTTA
1 ATGCCATAGCCCAGATATGGTCTTACA-GTAATCTTA
76286240 GTAACCCTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (41 bp):
ATGCCATAGCCCAGATATGGTCTTACAGTAATCTTATATCG
Found at i:76286594 original size:54 final size:54
Alignment explanation
Indices: 76286511--76286620 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
76286501 TAACAAATTT
* *
76286511 AACTCATTTAATATTCACATTGTTTAATTCAGCCCAAAAATTATACTATGGCAA
1 AACTCATTTAATATTCACATTGTTCAATTCAGCCCAAAAATTATACTATAGCAA
76286565 AACTCATTTAATATTCACATTGTTCAATTCAGCCCAAAAATTATACTATAGCAA
1 AACTCATTTAATATTCACATTGTTCAATTCAGCCCAAAAATTATACTATAGCAA
76286619 AA
1 AA
76286621 ATTACTTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (54 bp):
AACTCATTTAATATTCACATTGTTCAATTCAGCCCAAAAATTATACTATAGCAA
Found at i:76288468 original size:25 final size:26
Alignment explanation
Indices: 76288440--76288496 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
76288430 TTTCAAGAGA
76288440 TAAAATCAAATTAG-TTTTTTTCCAC
1 TAAAATCAAATTAGTTTTTTTTCCAC
76288465 TAAAATCAAATTAGTTTTTTTTCCAC
1 TAAAATCAAATTAGTTTTTTTTCCAC
76288491 TAAAAT
1 TAAAAT
76288497 GGGTTTTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 14 0.45
26 17 0.55
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.44
Consensus pattern (26 bp):
TAAAATCAAATTAGTTTTTTTTCCAC
Found at i:76290285 original size:22 final size:23
Alignment explanation
Indices: 76290257--76290299 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
76290247 TTTGAATGAT
76290257 TAAATGG-CTT-AATGAGTAAAAG
1 TAAATGGACTTAAATG-GTAAAAG
76290279 TAAATGGACTTAAATGGTAAA
1 TAAATGGACTTAAATGGTAAA
76290300 TAAACCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.28
Consensus pattern (23 bp):
TAAATGGACTTAAATGGTAAAAG
Found at i:76293213 original size:46 final size:46
Alignment explanation
Indices: 76293156--76293331 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
76293146 TATTTGGGCA
76293156 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
76293202 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
76293249 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76293295 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76293332 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76293311 original size:93 final size:93
Alignment explanation
Indices: 76293152--76293323 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
76293142 AGGATATTTG
*
76293152 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
76293217 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
76293245 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
76293310 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76293324 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76299737 original size:47 final size:49
Alignment explanation
Indices: 76299512--76299814 Score: 456
Period size: 49 Copynumber: 6.3 Consensus size: 49
76299502 GTATGAGATA
76299512 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
76299561 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
76299610 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
76299659 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
76299706 TATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
76299753 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
76299800 TATAAATGTGATAAG
1 TATATATGTGATAAG
76299815 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 98 0.41
48 5 0.02
49 137 0.57
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:76302256 original size:46 final size:45
Alignment explanation
Indices: 76302203--76302378 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
76302193 TATTTGGGCA
76302203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*** * *
76302248 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAT
* *
76302296 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*
76302341 TCCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76302379 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 5 0.05
46 63 0.58
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:76302358 original size:93 final size:93
Alignment explanation
Indices: 76302199--76302370 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
76302189 AGGATATTTG
*
76302199 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAG
76302264 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
76302292 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAT-TCCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAA-CTCGTTGA
76302356 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
76302371 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 5 0.07
93 70 0.93
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76305143 original size:17 final size:18
Alignment explanation
Indices: 76305121--76305159 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
76305111 CAAATTGGGT
76305121 CGTGTGGGCC-ACACGGG
1 CGTGTGGGCCGACACGGG
*
76305138 CGTGTGGGCCGACATGGG
1 CGTGTGGGCCGACACGGG
76305156 CGTG
1 CGTG
76305160 GGAGACCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.10, C:0.26, G:0.49, T:0.15
Consensus pattern (18 bp):
CGTGTGGGCCGACACGGG
Found at i:76305158 original size:18 final size:17
Alignment explanation
Indices: 76305116--76305159 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
76305106 AAGGCCAAAT
76305116 TGGGTCGTGTGGGCCACA
1 TGGG-CGTGTGGGCCACA
*
76305134 CGGGCGTGTGGGCCGACA
1 TGGGCGTGTGGGCC-ACA
76305152 TGGGCGTG
1 TGGGCGTG
76305160 GGAGACCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.09, C:0.23, G:0.50, T:0.18
Consensus pattern (17 bp):
TGGGCGTGTGGGCCACA
Found at i:76307564 original size:29 final size:29
Alignment explanation
Indices: 76307531--76307690 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
76307521 GTGACGAGAT
76307531 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76307560 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76307589 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
76307618 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
76307647 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
76307676 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
76307691 GAAATGGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76311033 original size:22 final size:22
Alignment explanation
Indices: 76311001--76311043 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76310991 ACACCATACC
*
76311001 AGTAGGAACCGAAGTGCAAATT
1 AGTAGGAACCGAAGTGAAAATT
* *
76311023 AGTAGGCACCGTAGTGAAAAT
1 AGTAGGAACCGAAGTGAAAAT
76311044 CTCGTACAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (22 bp):
AGTAGGAACCGAAGTGAAAATT
Found at i:76314142 original size:42 final size:41
Alignment explanation
Indices: 76314065--76314166 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 41
76314055 GCTTGGTCTG
76314065 GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT-T
1 GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTCT
* * *
76314105 CGAAGGGCTTTTTAGTGCCAGTG-TCATAACCGGACTTAGTTCT
1 -GAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTTCT
* *
76314148 GAAGGGCCTTCGAGCCAGT
1 GAAGGGCTTTTGAGCCAGT
76314167 AGTCTAATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 7 0.13
41 9 0.17
42 27 0.52
43 9 0.17
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTCT
Found at i:76316176 original size:27 final size:28
Alignment explanation
Indices: 76316146--76316215 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
76316136 ATAGTGAATC
*
76316146 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
76316173 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
76316201 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76316216 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:76316287 original size:42 final size:42
Alignment explanation
Indices: 76316223--76316329 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
76316213 GCTGTACAAT
* *
76316223 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76316265 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76316307 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
76316330 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:76325366 original size:42 final size:41
Alignment explanation
Indices: 76325286--76325435 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
76325276 GAGCTTGGTC
76325286 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
76325327 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
76325369 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
76325410 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
76325436 GAGTCAGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:76325418 original size:41 final size:40
Alignment explanation
Indices: 76325266--76325435 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
76325256 GCTAATCGGG
*
76325266 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
76325307 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
76325350 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
76325390 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
76325431 G-CTAA
1 GTCTAA
76325436 GAGTCAGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:76330260 original size:14 final size:15
Alignment explanation
Indices: 76330236--76330265 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
76330226 GGATATCAAA
76330236 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
76330251 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
76330265 A
1 A
76330266 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:76344748 original size:29 final size:29
Alignment explanation
Indices: 76344716--76344788 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
76344706 CTTCGAGCTC
* *
76344716 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76344745 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76344774 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76344789 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76346000 original size:24 final size:24
Alignment explanation
Indices: 76345959--76346014 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
76345949 TTTTTTTCCT
76345959 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
76345984 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
76346007 TATTCTTT
1 T-TTCTTT
76346015 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:76346320 original size:14 final size:14
Alignment explanation
Indices: 76346301--76346328 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76346291 TGACTTGGTT
76346301 TAGTGGTCCCGAAA
1 TAGTGGTCCCGAAA
76346315 TAGTGGTCCCGAAA
1 TAGTGGTCCCGAAA
76346329 CCACTTTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (14 bp):
TAGTGGTCCCGAAA
Found at i:76346903 original size:17 final size:17
Alignment explanation
Indices: 76346883--76346915 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76346873 ATTAATTAAC
76346883 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
76346900 TAAATTATTTTCTCAA
1 TAAATTAATTTCTCAA
76346916 ACCAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:76358328 original size:41 final size:41
Alignment explanation
Indices: 76358283--76358400 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76358273 TGAAAGATAA
76358283 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76358324 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76358354 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76358395 ATGTAG
1 ATGTAG
76358401 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76358335 original size:71 final size:71
Alignment explanation
Indices: 76358251--76358414 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76358241 GAGATGTATC
76358251 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76358316 AGGACA
66 AGGACA
76358322 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76358387 AGGACA
66 AGGACA
76358393 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76358415 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76360191 original size:42 final size:41
Alignment explanation
Indices: 76360111--76360260 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
76360101 GAGCTTGGTC
76360111 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
76360152 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
76360194 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
76360235 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
76360261 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:76360243 original size:41 final size:40
Alignment explanation
Indices: 76360091--76360260 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
76360081 GCTAATCGGG
*
76360091 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
76360132 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
76360175 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
76360215 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
76360256 G-CTAA
1 GTCTAA
76360261 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:76367153 original size:68 final size:68
Alignment explanation
Indices: 76367003--76367160 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
76366993 GTAGCCAATT
* * *
76367003 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGAGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGAGACCTAGCTACA
**
76367068 TTTA
65 CATA
* * *
76367072 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGAGACCTAGCTA
76367134 CTACATA
63 C-ACATA
76367141 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
76367161 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGAGACCTAGCTACAC
ATA
Found at i:76369407 original size:16 final size:16
Alignment explanation
Indices: 76369388--76369418 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76369378 CTTCTTCACT
76369388 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
76369404 TACTTACTTACTTAA
1 TACTCACTTACTTAA
76369419 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:76369424 original size:20 final size:20
Alignment explanation
Indices: 76369385--76369424 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
76369375 AAACTTCTTC
* *
76369385 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
76369405 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
76369425 TTATTAATTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:76369800 original size:55 final size:53
Alignment explanation
Indices: 76369669--76369864 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 53
76369659 CTTACCATTT
* *
76369669 CCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * *
76369722 CCATGCCTTGGA-ATGGTCTTACATGGGA-CCTTTGCCTTATAGCAACTTATCAATG
1 CCATGTCTT-GACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATG
* * *** *
76369777 TCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TG
* * *
76369832 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
76369865 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 12 0.10
55 66 0.57
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:76376284 original size:40 final size:40
Alignment explanation
Indices: 76376204--76376345 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
76376194 CAACCAAGTA
* ** *
76376204 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
76376243 CCTTCGGGACGTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
76376283 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
76376323 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
76376346 CATCCGAATA
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.14
40 80 0.86
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:76380858 original size:55 final size:55
Alignment explanation
Indices: 76380743--76380859 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 55
76380733 GCACTTAAAA
* * * * * *
76380743 TTTT-AAGTCATTGTTGTACACGGGCAGGCCACACGGGCGTATGATATGGCCATG
1 TTTTAAAGTCAATATTGTACACGAGCAGGCCACAAGGGCGTACGACATGGCCATG
* * * * *
76380797 TATTAAAGTCAATATTGTACACGAGCAGGCCACAAGGGCGTGCGCCATGGGCGTG
1 TTTTAAAGTCAATATTGTACACGAGCAGGCCACAAGGGCGTACGACATGGCCATG
76380852 TTTTAAAG
1 TTTTAAAG
76380860 CCAGTGTTAC
Statistics
Matches: 50, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
54 3 0.06
55 47 0.94
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (55 bp):
TTTTAAAGTCAATATTGTACACGAGCAGGCCACAAGGGCGTACGACATGGCCATG
Found at i:76385976 original size:40 final size:39
Alignment explanation
Indices: 76385931--76386138 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
76385921 CGGAATACAA
*
76385931 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
76385971 CCGGATAGAACCACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76386011 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
76386051 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
76386091 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76386131 CCGGATAT
1 CCGGATAT
76386139 CATTCAATTG
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 142 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76386071 original size:80 final size:80
Alignment explanation
Indices: 76385931--76386137 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
76385921 CGGAATACAA
* * *
76385931 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCACAAATG
*
76385996 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* ** *
76386011 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-AACCACTAGCACAAAT
*
76386075 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
76386091 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
76386138 TCATTCAATT
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
79 1 0.01
80 107 0.99
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:76399423 original size:12 final size:12
Alignment explanation
Indices: 76399406--76399430 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76399396 GCCGACTACT
76399406 GTTACTGTTACC
1 GTTACTGTTACC
76399418 GTTACTGTTACC
1 GTTACTGTTACC
76399430 G
1 G
76399431 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:76399461 original size:45 final size:45
Alignment explanation
Indices: 76399408--76399514 Score: 144
Period size: 45 Copynumber: 2.4 Consensus size: 45
76399398 CGACTACTGT
*
76399408 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAA
* * *
76399453 TATTGTTACCATTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
* *
76399498 TACTATTACTGTTACTG
1 TACTGTTACCGTTACTG
76399515 CTACTACTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:76399529 original size:18 final size:18
Alignment explanation
Indices: 76399498--76399532 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76399488 GTGTGTTGAA
* *
76399498 TACTATTACTGTTACTGC
1 TACTACTACCGTTACTGC
76399516 TACTACTACCGTTACTG
1 TACTACTACCGTTACTG
76399533 ATTACTGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (18 bp):
TACTACTACCGTTACTGC
Found at i:76406694 original size:12 final size:12
Alignment explanation
Indices: 76406677--76406701 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76406667 GTCGACTACT
76406677 GTTACTGTTACC
1 GTTACTGTTACC
76406689 GTTACTGTTACC
1 GTTACTGTTACC
76406701 G
1 G
76406702 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:76406732 original size:45 final size:45
Alignment explanation
Indices: 76406679--76406785 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
76406669 CGACTACTGT
* *
76406679 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGAATCAG-CACTTTGTGTGTCGAA
* *
76406724 TATTGTTACCGTTACTGTTACAGAATCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGAATCAGCACTTTGTGTGTCGAA
*
76406769 TACTGTTACTGTTACTG
1 TACTGTTACCGTTACTG
76406786 CTACTGCTAC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 54 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGAATCAGCACTTTGTGTGTCGAA
Found at i:76406791 original size:51 final size:51
Alignment explanation
Indices: 76406664--76406783 Score: 146
Period size: 45 Copynumber: 2.5 Consensus size: 51
76406654 CAGCCACTTA
* * *
76406664 TGTGTCGACTACTGTTACTGTTACCGTTACTGTTACCGATTCGACACTTTG
1 TGTGTCGAATACTGTTACTGTTACCGTTACTGTTACAGAATCGACACTTTG
76406715 TGTGTCGAATA----T--TGTTACCGTTACTGTTACAGAATC-AGCACTTTG
1 TGTGTCGAATACTGTTACTGTTACCGTTACTGTTACAGAATCGA-CACTTTG
*
76406760 TGTGTTGAATACTGTTACTGTTAC
1 TGTGTCGAATACTGTTACTGTTAC
76406784 TGCTACTGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
44 1 0.02
45 39 0.67
47 1 0.02
49 1 0.02
51 16 0.28
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (51 bp):
TGTGTCGAATACTGTTACTGTTACCGTTACTGTTACAGAATCGACACTTTG
Found at i:76406800 original size:18 final size:18
Alignment explanation
Indices: 76406769--76406803 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76406759 GTGTGTTGAA
* *
76406769 TACTGTTACTGTTACTGC
1 TACTGCTACCGTTACTGC
76406787 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
76406804 ATTACTGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:76418899 original size:40 final size:40
Alignment explanation
Indices: 76418844--76419053 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76418834 AACATTGGAA
76418844 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76418884 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76418924 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76418964 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76419003 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76419044 CTATATCCGG
1 ATATATCCGG
76419054 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76427031 original size:40 final size:40
Alignment explanation
Indices: 76426976--76427182 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
76426966 AACATTGGAA
76426976 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76427016 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76427056 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * **
76427096 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-CC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76427135 A-A-ATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76427173 CTATATCCGG
1 ATATATCCGG
76427183 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
37 27 0.18
38 2 0.01
39 2 0.01
40 120 0.79
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76429926 original size:40 final size:40
Alignment explanation
Indices: 76429846--76430060 Score: 310
Period size: 40 Copynumber: 5.4 Consensus size: 40
76429836 CAACCAAGTA
* * * * *
76429846 CCTTCGGG-TTTAG-CCGGATATAGTTACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
**
76429884 CCTTCGGGACTTAGCCCGGTTATAGTAACTC-CACAAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAA-TG
*
76429924 CCTTCAGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
76429964 CCTTCGGGACTTAGCCAGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
76430004 CCTTTGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
76430044 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
76430061 AGTTATCATC
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
38 8 0.05
39 9 0.06
40 137 0.86
41 6 0.04
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:76438112 original size:40 final size:40
Alignment explanation
Indices: 76438031--76438246 Score: 326
Period size: 40 Copynumber: 5.4 Consensus size: 40
76438021 CAACCAAGTA
** * * * *
76438031 CCTTCGGGGTTTAG-CCGGATATAGTTACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
* ** *
76438070 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
76438110 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
76438150 CCTTCGGGACTTAGCCCGGAAATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
76438190 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
76438230 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
76438247 AGTTATCATC
Statistics
Matches: 162, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 11 0.07
40 151 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:76443989 original size:35 final size:35
Alignment explanation
Indices: 76443950--76444149 Score: 267
Period size: 35 Copynumber: 5.7 Consensus size: 35
76443940 TCCATGGCAA
* *
76443950 AGTTGTGAAACATAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
76443985 AGTTGTGAAACGTAGGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* * *
76444020 AGTTGTGAAACGTAGGTATGGTATTAACTATATTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
76444055 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * * *
76444090 AGTTAAGAAACATAGGTATGGCATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
* *
76444125 AGTTGTAAAATGTAGGTATGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
76444150 TCAATGAGGA
Statistics
Matches: 145, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
34 1 0.01
35 144 0.99
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:76444121 original size:105 final size:105
Alignment explanation
Indices: 76443950--76444149 Score: 301
Period size: 105 Copynumber: 1.9 Consensus size: 105
76443940 TCCATGGCAA
** * *
76443950 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCA
1 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACATAGGTATGGCATTAACCA
* *
76444015 TACTGAGTTGTGAAACGTAGGTATGGTATTAACTATATTG
66 TACCGAGTTGTAAAACGTAGGTATGGTATTAACTATATTG
* * **
76444055 AGTTGTGAAACGTAGGTATGGTATTATCCATACTGAGTTAAGAAACATAGGTATGGCATTTCCCA
1 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACATAGGTATGGCATTAACCA
*
76444120 TACCGAGTTGTAAAATGTAGGTATGGTATT
66 TACCGAGTTGTAAAACGTAGGTATGGTATT
76444150 TCAATGAGGA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (105 bp):
AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACATAGGTATGGCATTAACCA
TACCGAGTTGTAAAACGTAGGTATGGTATTAACTATATTG
Found at i:76451437 original size:35 final size:34
Alignment explanation
Indices: 76451398--76451526 Score: 159
Period size: 35 Copynumber: 3.7 Consensus size: 34
76451388 TCCATGGCAA
76451398 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTAT-ATCCATACTG
76451433 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTA-TATCCATACTG
** * * * *
76451468 AGTTAAGAAACGTAGGTACGGCATTTCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATAT-CCATACTG
* *
76451503 AGTTGTAAAATGTAGGTATGGTAT
1 AGTTGTGAAACGTAGGTATGGTAT
76451527 TTCAATGAGG
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
34 2 0.03
35 77 0.96
36 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (34 bp):
AGTTGTGAAACGTAGGTATGGTATATCCATACTG
Done.