Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 259 of 378
Found at i:77713349 original size:24 final size:24
Alignment explanation
Indices: 77713322--77713384 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
77713312 CTTATTATGT
77713322 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77713346 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77713370 TCGCACACATAGTGC
1 TCGCACACATAGTGC
77713385 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:77715432 original size:46 final size:46
Alignment explanation
Indices: 77715365--77715538 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
77715355 TGTAACCCGC
*
77715365 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
77715411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
77715461 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
77715503 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
77715539 ATGCCCAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.26
46 34 0.31
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:77715530 original size:92 final size:93
Alignment explanation
Indices: 77715372--77715543 Score: 310
Period size: 92 Copynumber: 1.9 Consensus size: 93
77715362 CGCCCATAAG
* *
77715372 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCA
77715437 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
77715465 CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCA
77715529 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
77715544 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.62
93 29 0.38
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77722566 original size:28 final size:28
Alignment explanation
Indices: 77722497--77722597 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77722487 GACAAGATTG
* * * *
77722497 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77722527 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77722555 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77722584 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77722598 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77734932 original size:27 final size:28
Alignment explanation
Indices: 77734902--77734971 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
77734892 ATAGTGTGTC
*
77734902 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77734929 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
77734957 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77734972 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:77738326 original size:27 final size:26
Alignment explanation
Indices: 77738270--77738326 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
77738260 TCAGATCATC
* * * **
77738270 AAAAATCATACGCAGACTTAATCATC
1 AAAAATCATACGCAAACTGAAACAGA
77738296 AAAAATCATACGCAAAGCTGAAACAGA
1 AAAAATCATACGCAAA-CTGAAACAGA
77738323 AAAA
1 AAAA
77738327 TATTGAATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (26 bp):
AAAAATCATACGCAAACTGAAACAGA
Found at i:77738327 original size:26 final size:26
Alignment explanation
Indices: 77738266--77738320 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
77738256 AGCATCAGAT
* * *
77738266 CATCAAAAATCATACGCAGACTTAAT
1 CATCAAAAATCATACGCAAACTGAAA
77738292 CATCAAAAATCATACGCAAAGCTGAAA
1 CATCAAAAATCATACGCAAA-CTGAAA
77738319 CA
1 CA
77738321 GAAAAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.49, C:0.24, G:0.09, T:0.18
Consensus pattern (26 bp):
CATCAAAAATCATACGCAAACTGAAA
Found at i:77746003 original size:28 final size:28
Alignment explanation
Indices: 77745961--77746029 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
77745951 TTTAAAACCC
*
77745961 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
77745988 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
77746016 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
77746030 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:77747842 original size:17 final size:19
Alignment explanation
Indices: 77747820--77747865 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
77747810 ACATACATAC
77747820 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
77747837 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
77747856 AATACTAATT
1 AATAATAATT
77747866 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:77756499 original size:40 final size:39
Alignment explanation
Indices: 77756455--77756636 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
77756445 GTTCAAAACA
* * ** * *
77756455 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGGTATCATAACTCGCACAATTG
* * *
77756495 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGGTATCATAACTCGCACAATTG
*
77756535 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
*
77756574 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
*
77756613 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGGTATCA
77756637 CTCGAACATT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
Found at i:77756566 original size:39 final size:39
Alignment explanation
Indices: 77756485--77756636 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
77756475 TATGGTAACC
* * * *
77756485 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
77756525 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
77756564 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
77756603 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
77756637 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:77763599 original size:39 final size:39
Alignment explanation
Indices: 77763469--77763620 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
77763459 TATGGTAACC
* * * *
77763469 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGC-T
*
77763510 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCAT-GCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
77763548 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
77763587 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
77763621 CTCGAACATT
Statistics
Matches: 104, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
38 36 0.35
39 37 0.36
40 14 0.13
41 17 0.16
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:77763602 original size:77 final size:79
Alignment explanation
Indices: 77763469--77763620 Score: 236
Period size: 77 Copynumber: 1.9 Consensus size: 79
77763459 TATGGTAACC
77763469 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
*
77763534 CCGGGTATCATGCT
66 CCGGATATCATGCT
* * * * *
77763548 CGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCATAGC-TCGCACAATTGCCTTCGGGCTTAGC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
77763611 CCGGATATCA
66 CCGGATATCA
77763621 CTCGAACATT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 34 0.51
78 16 0.24
79 17 0.25
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
CCGGATATCATGCT
Found at i:77771022 original size:39 final size:39
Alignment explanation
Indices: 77770941--77771092 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
77770931 TATGGTAACC
* * * * *
77770941 CGCACAAATGCCTTGGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
77770981 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
77771020 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
77771059 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
77771093 CTCGAACATT
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:77773380 original size:42 final size:41
Alignment explanation
Indices: 77773283--77773380 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 41
77773273 ACATCATGTT
* * **
77773283 TGGGACATTAGCATCATATTTGATTTCATGTAAGACCCTGTC
1 TGGGACGTTGGCATCATATTTGATTAAATGTAAGACCC-GTC
*
77773325 TAGGACAG-TGGCATCGATATTTGATTAAATGTAAGACCAC-TC
1 TGGGAC-GTTGGCATC-ATATTTGATTAAATGTAAGACC-CGTC
77773367 TGGGACGTTGGCAT
1 TGGGACGTTGGCAT
77773381 TGTACGAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.02
42 24 0.52
43 20 0.43
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (41 bp):
TGGGACGTTGGCATCATATTTGATTAAATGTAAGACCCGTC
Found at i:77773592 original size:26 final size:25
Alignment explanation
Indices: 77773558--77773608 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
77773548 ATATATGTAA
*
77773558 GAGAATTATGGTTAAATGAGCTATAT
1 GAGAATTATGGATAAATGAG-TATAT
* *
77773584 GAGACTTATGGATATATGAGTATAT
1 GAGAATTATGGATAAATGAGTATAT
77773609 TTTTCCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (25 bp):
GAGAATTATGGATAAATGAGTATAT
Found at i:77775588 original size:47 final size:47
Alignment explanation
Indices: 77775516--77775739 Score: 229
Period size: 48 Copynumber: 4.7 Consensus size: 47
77775506 GGTATAATGC
* * * *
77775516 CGATGCCATATCCCAAACATAGTCTTACACTGGCTCATCCATCAAGT-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAT-ACGTG
*
77775563 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCGTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATA--CGTG
* * * * *
77775612 CTGATGCCATGTCCCAGACATGGTCTTACACCGACACCTCTATACGTG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATACGTG
* * * * *
77775660 CCGATGCCATGTCCAAGACATGGTCTTACACTGACACCTCTATACGTG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATACGTG
77775708 CTGATGCCATGTCCC-GACATGGTCTTACACTG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTG
77775740 ACACATCTCG
Statistics
Matches: 156, Mismatches: 13, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
46 3 0.02
47 53 0.34
48 62 0.40
49 2 0.01
50 34 0.22
51 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATACGTG
Found at i:77775624 original size:50 final size:48
Alignment explanation
Indices: 77775564--77775743 Score: 265
Period size: 48 Copynumber: 3.7 Consensus size: 48
77775554 CCATCAAGTC
* * *
77775564 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTC-TATACGTGCT
* *
77775614 GATGCCATGTCCCAGACATGGTCTTACACCGACACCTCTATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCT
*
77775662 GATGCCATGTCCAAGACATGGTCTTACACTGACACCTCTATACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCT
77775710 GATGCCATGTCCC-GACATGGTCTTACACTGACAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACAC
77775744 ATCTCGTAAC
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
47 21 0.17
48 65 0.54
49 2 0.02
50 31 0.26
51 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCT
Found at i:77775683 original size:98 final size:95
Alignment explanation
Indices: 77775563--77775743 Score: 274
Period size: 98 Copynumber: 1.9 Consensus size: 95
77775553 TCCATCAAGT
* * *
77775563 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCGTGCTGATGCCATGTCCC
1 CGATGCCATGTCCAAGACATGGTCTTACACTGA-CAC-CAC-TATACGTGCTGATGCCATGTCCC
77775627 AGACATGGTCTTACACCGACACCTCTATACGTGC
63 -GACATGGTCTTACACCGACACCTCTATACGTGC
*
77775661 CGATGCCATGTCCAAGACATGGTCTTACACTGACACCTCTATACGTGCTGATGCCATGTCCCGAC
1 CGATGCCATGTCCAAGACATGGTCTTACACTGACACCACTATACGTGCTGATGCCATGTCCCGAC
*
77775726 ATGGTCTTACACTGACAC
66 ATGGTCTTACACCGACAC
77775744 ATCTCGTAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
95 20 0.26
96 22 0.29
97 2 0.03
98 32 0.42
99 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (95 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTGACACCACTATACGTGCTGATGCCATGTCCCGAC
ATGGTCTTACACCGACACCTCTATACGTGC
Found at i:77778638 original size:94 final size:92
Alignment explanation
Indices: 77778505--77778685 Score: 267
Period size: 94 Copynumber: 1.9 Consensus size: 92
77778495 CAGGCTTACA
* *
77778505 TCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-TTCGAGGCCGATGCAT
1 TCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCAT
77778568 GTCCCAGACATGTCTTACACTAGCTCTCG
64 GTCCCAGACATGTCTTACACTAGCTCTCG
* * *
77778597 TCTCAAGGCCGATGCCATGTCCCAGGCATGGTCTTAGACTGGCTCTCATAATGTGGCCGATGCAT
1 TCTCAAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCAT
77778662 GTCCCAGACATGTCTTACACTAGC
64 GTCCCAGACATGTCTTACACTAGC
77778686 ACACAAATAA
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
92 13 0.16
93 13 0.16
94 52 0.65
95 2 0.03
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.27
Consensus pattern (92 bp):
TCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGT
CCCAGACATGTCTTACACTAGCTCTCG
Found at i:77778642 original size:48 final size:46
Alignment explanation
Indices: 77778503--77778682 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
77778493 TACAGGCTTA
77778503 CATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-T
1 CATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT
* *
77778548 ACATTTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
1 -CATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT
* * * *
77778595 CGTCTCAAGGCCGATGCCATGTCCCAGGCATGGTCTTAGACTGGCTCT
1 CATCTCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT
* *
77778643 CATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
1 CAT-CTCGAGGCCGATGCATGTCCCAGACATGTCTTACACT
77778683 AGCACACAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
46 64 0.55
47 27 0.23
48 24 0.21
49 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (46 bp):
CATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT
Found at i:77778917 original size:18 final size:18
Alignment explanation
Indices: 77778894--77778934 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
77778884 CGACTAGTTC
77778894 GGCTTAGTCCACTTGTTT
1 GGCTTAGTCCACTTGTTT
77778912 GGCTTAGTCCACTTGTTT
1 GGCTTAGTCCACTTGTTT
*
77778930 TGCTT
1 GGCTT
77778935 TTCCTCGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.22, G:0.22, T:0.46
Consensus pattern (18 bp):
GGCTTAGTCCACTTGTTT
Found at i:77779966 original size:23 final size:23
Alignment explanation
Indices: 77779940--77779984 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
77779930 GTTAATGATA
77779940 TGGTATGAATGGTGTATGTTTTT
1 TGGTATGAATGGTGTATGTTTTT
77779963 TGGTATGAATGGTGTATGTTTT
1 TGGTATGAATGGTGTATGTTTT
77779985 GGTTATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (23 bp):
TGGTATGAATGGTGTATGTTTTT
Found at i:77783238 original size:43 final size:43
Alignment explanation
Indices: 77783090--77783390 Score: 288
Period size: 43 Copynumber: 7.1 Consensus size: 43
77783080 ATATTGTACA
* * ** *
77783090 ATGCCAACGTCCCAGACGTGGTTTTACATGCT-ATCTTATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATATCG
* * * *
77783133 ATG-CAACTGTCCTAGAC-AGGTTTTACAC-TAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * * * *
77783173 ATGTCGATGTCTCAGACATGGTCTTACACGTAACCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
77783216 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
77783259 ATGCCAATGTCCTAGACTTGGTCTTACTCGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * **
77783302 ATGCCAACGTCCTAGACGTAGTCTTACTCAAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
77783345 ATGCCAACGTCCCAGATGTGGTCTTACTCATATTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
77783388 ATG
1 ATG
77783391 TCACATATAT
Statistics
Matches: 217, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
40 11 0.05
41 18 0.08
42 22 0.10
43 166 0.76
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:77784696 original size:14 final size:15
Alignment explanation
Indices: 77784679--77784707 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77784669 TCACAAAAAT
77784679 TTCACACAT-ATAAA
1 TTCACACATAATAAA
77784693 TTCACACATAATAAA
1 TTCACACATAATAAA
77784708 CAATAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:77790386 original size:43 final size:42
Alignment explanation
Indices: 77790295--77790407 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 42
77790285 GAGATTTATG
* * * * *
77790295 TGTAAGACCATGTCTGAGACA-TCGACATCGTATTTGATTTCG
1 TGTAAGACCCTGTCTGGGACAGT-GGCATCGTATTTGATTACA
*
77790337 TATAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGACAGTGGCATCG-TATTTGATTACA
*
77790380 TGTAAGATCAC-GTCTGGGAC-GTTGGCAT
1 TGTAAGA-CCCTGTCTGGGACAG-TGGCAT
77790408 TGTACGAGTT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 25 0.42
43 32 0.54
44 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACAGTGGCATCGTATTTGATTACA
Found at i:77792266 original size:40 final size:39
Alignment explanation
Indices: 77792098--77792268 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
77792088 AGAAATTGAA
* *
77792098 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
77792138 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
77792178 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
77792218 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
77792258 TGATATCCGGG
1 TGATATCCGGG
77792269 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:77800183 original size:39 final size:40
Alignment explanation
Indices: 77800125--77800225 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
77800115 AAATTGAATG
* *
77800125 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
77800164 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
77800204 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
77800226 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:77800218 original size:40 final size:40
Alignment explanation
Indices: 77800125--77800307 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
77800115 AAATTGAATG
* * * * *
77800125 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
77800164 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
77800204 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
77800244 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
77800284 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
77800308 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:77807196 original size:24 final size:24
Alignment explanation
Indices: 77807162--77807227 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
77807152 TTCGGTCTAT
* * *
77807162 ATATCGGGAAGCTCATAA-GAGCC
1 ATATCAGGAAGCTCACAAGGAACC
*
77807185 ATAATCAGGAAGTTCACAAGGAACC
1 AT-ATCAGGAAGCTCACAAGGAACC
*
77807210 ATATCAAGAAGCTCACAA
1 ATATCAGGAAGCTCACAA
77807228 AGAGAAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
23 2 0.06
24 27 0.77
25 6 0.17
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (24 bp):
ATATCAGGAAGCTCACAAGGAACC
Found at i:77812811 original size:9 final size:9
Alignment explanation
Indices: 77812797--77812821 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77812787 GACTAAAATG
77812797 TGAAATAAA
1 TGAAATAAA
77812806 TGAAATAAA
1 TGAAATAAA
77812815 TGAAATA
1 TGAAATA
77812822 TATGGACTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:77821253 original size:40 final size:40
Alignment explanation
Indices: 77821170--77821355 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
77821160 TCGAATGATG
* * *
77821170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* *
77821210 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
77821250 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
** * *
77821290 TCTAGGTTAAGTCCCGAAGGCATTTGTGCAAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
*
77821331 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77821356 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 116 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:77823332 original size:34 final size:34
Alignment explanation
Indices: 77823294--77823358 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
77823284 ATACTGAGTT
* *
77823294 GGGCTAAAGCCCAGACTGATACTGCTACTGTAGC
1 GGGCTAAAGCCCACACTAATACTGCTACTGTAGC
* *
77823328 GGGCTAAGGCCCACACTAATATTGCTACTGT
1 GGGCTAAAGCCCACACTAATACTGCTACTGT
77823359 TAAGGGCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (34 bp):
GGGCTAAAGCCCACACTAATACTGCTACTGTAGC
Found at i:77823366 original size:34 final size:34
Alignment explanation
Indices: 77823294--77823372 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
77823284 ATACTGAGTT
* * * *
77823294 GGGCTAAAGCCCAGACTGATACTGCTACTGTAGC
1 GGGCTAAGGCCCACACTAATACTGCTACTGTAGA
*
77823328 GGGCTAAGGCCCACACTAATATTGCTACTGTTA-A
1 GGGCTAAGGCCCACACTAATACTGCTACTG-TAGA
*
77823362 GGGCTTAGGCC
1 GGGCTAAGGCC
77823373 AGACTATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (34 bp):
GGGCTAAGGCCCACACTAATACTGCTACTGTAGA
Found at i:77828868 original size:46 final size:46
Alignment explanation
Indices: 77828812--77828987 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
77828802 TATTTGGGCA
* *
77828812 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAGCG
* *** * * *
77828858 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGA-GCG
* *
77828905 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAGCG
* * *
77828951 ACCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77828988 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 70 0.65
47 37 0.35
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAGCG
Found at i:77828967 original size:93 final size:93
Alignment explanation
Indices: 77828808--77828979 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
77828798 GGGATATTTG
* * * *
77828808 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATACGAACGACCGAACTCGTTGAG
77828873 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
77828901 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGACCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATACGAACGACCGAACTCGTTGAG
77828966 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
77828980 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATACGAACGACCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:77834239 original size:68 final size:66
Alignment explanation
Indices: 77834167--77834337 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 66
77834157 CATCATGTGT
* * * *
77834167 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
77834230 TGTAG
62 TGTAG
** * *
77834235 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
77834300 G
66 G
* * * *
77834301 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
77834338 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
64 24 0.27
65 18 0.20
66 34 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:77834272 original size:64 final size:64
Alignment explanation
Indices: 77834191--77834373 Score: 210
Period size: 66 Copynumber: 2.8 Consensus size: 64
77834181 AGACATTATG
* * *
77834191 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
77834255 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
77834320 A
64 A
* * *
77834321 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
77834374 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 21 0.21
66 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77836933 original size:68 final size:66
Alignment explanation
Indices: 77836861--77837032 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
77836851 CATCATGTGT
* * * *
77836861 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
77836924 TGTAG
62 TGTAG
** * *
77836929 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
77836994 AG
65 AG
* * * *
77836996 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
77837033 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:77836966 original size:64 final size:64
Alignment explanation
Indices: 77836885--77837068 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
77836875 AGACATTATG
* * *
77836885 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
77836949 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77837014 AA
63 AA
* * *
77837016 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
77837069 CGAACTATGA
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77839661 original size:64 final size:64
Alignment explanation
Indices: 77839580--77839764 Score: 205
Period size: 67 Copynumber: 2.9 Consensus size: 64
77839570 AGACATTATG
* * *
77839580 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
77839644 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77839709 AA
63 AA
* * *
77839711 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
77839765 GAAGATGGGT
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77846274 original size:46 final size:46
Alignment explanation
Indices: 77846224--77846352 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
77846214 TGGTTGAGCA
*
77846224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
77846270 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
77846316 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77846353 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:77849322 original size:15 final size:15
Alignment explanation
Indices: 77849284--77849327 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
77849274 CATAGTATCG
* *
77849284 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
77849299 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
77849314 TATCTTGGATTTCT
1 TATCTTGGATTTCT
77849328 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:77851775 original size:46 final size:46
Alignment explanation
Indices: 77851725--77851900 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
77851715 TGGTTGAGCA
77851725 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
77851771 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
77851818 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
77851864 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77851901 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77851881 original size:93 final size:93
Alignment explanation
Indices: 77851722--77851892 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77851712 GGATGGTTGA
*
77851722 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
77851787 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
77851815 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
77851880 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77851893 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:77854822 original size:12 final size:13
Alignment explanation
Indices: 77854786--77854823 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
77854776 AAATATTTGA
77854786 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
77854799 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
77854813 CTTG-TCTTAAT
1 CTTGTTCTTAAT
77854824 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:77859615 original size:14 final size:14
Alignment explanation
Indices: 77859596--77859624 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77859586 GCCACTTCAA
77859596 ATATCTCATTATCT
1 ATATCTCATTATCT
77859610 ATATCTCATTATCT
1 ATATCTCATTATCT
77859624 A
1 A
77859625 CAATTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATCTCATTATCT
Found at i:77860484 original size:39 final size:39
Alignment explanation
Indices: 77860288--77860486 Score: 326
Period size: 39 Copynumber: 5.1 Consensus size: 39
77860278 AATTATATTA
* * * *
77860288 CTAGCACAAATCCTACGGGACTTTAGCCTGGATACATTT
1 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
77860327 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
77860366 CTAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
77860405 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
77860444 CTAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
77860483 CTAG
1 CTAG
77860487 TGTCTTGCAT
Statistics
Matches: 149, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 149 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:77866600 original size:3 final size:3
Alignment explanation
Indices: 77866592--77866638 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
77866582 AGTTCGTGTG
77866592 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
77866639 GCAATGTCAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:77867169 original size:48 final size:48
Alignment explanation
Indices: 77867067--77867279 Score: 232
Period size: 48 Copynumber: 4.4 Consensus size: 48
77867057 TGAGATCCCG
* * * * * * *
77867067 TGTAAGACCATGTCTAGGACATGACATC-GCATTCGAGATGAGAG-CAA
1 TGTAAGACCATGTCTGGGACATGGCATCAACGTT-GATATGTGTGCCAA
* *
77867114 GTGTAAGACCATGTTTGGGACATGTCATCAACGTTGATATGTGTGCCAA
1 -TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCCAA
* * * *
77867163 TATAAGACCATGTCTGGGACATGGCATCAACATTTATATGTGTGCCAC
1 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCCAA
*** * *
77867211 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCCAA
77867259 TGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
77867280 CGACATCGGC
Statistics
Matches: 140, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
48 134 0.96
49 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCCAA
Found at i:77867298 original size:96 final size:96
Alignment explanation
Indices: 77867115--77867298 Score: 242
Period size: 96 Copynumber: 1.9 Consensus size: 96
77867105 TGAGAGCAAG
* * *
77867115 TGTAAGACCATGTTTGGGACATGTCATCAACGTTGATATGTGTGCCAATATAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGG
* * * *
77867180 GACATGGCATCAACATTTATATGTGTGCCAC
66 GACACGACATCAACACTAATATGTGTGCCAC
*** * *
77867211 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCTAATGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGG
**
77867276 GACACGACATCGGCACTAATATG
66 GACACGACATCAACACTAATATG
77867299 AGACTTCGTA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGG
GACACGACATCAACACTAATATGTGTGCCAC
Found at i:77867313 original size:96 final size:96
Alignment explanation
Indices: 77867117--77867331 Score: 216
Period size: 96 Copynumber: 2.2 Consensus size: 96
77867107 AGAGCAAGTG
* * *
77867117 TAAGACCATGTTTGGGACATGTCATCAACGTTGATATGTGTGCCAATATAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGGGA
* * * * * * *
77867182 CATGGCATCAACATTTATATGTGTGCCACTG
66 CACGACATCAACACTAATATGAGTACCACTA
*** * *
77867213 TAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCTAATGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGGGA
** **
77867278 CACGACATCGGCACTAATATGAG-ACTTCGTA
66 CACGACATCAACACTAATATGAGTACCAC-TA
* * *
77867309 TAAGACCATATCTAGGATATGGC
1 TAAGACCATGTCTGGGACATGGC
77867332 GTCGACATGT
Statistics
Matches: 96, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
95 2 0.02
96 94 0.98
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCAATATAAGACCATGTCTGGGA
CACGACATCAACACTAATATGAGTACCACTA
Found at i:77876138 original size:2 final size:2
Alignment explanation
Indices: 77876131--77876158 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
77876121 GCTCTTGCAC
77876131 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77876159 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77877099 original size:40 final size:40
Alignment explanation
Indices: 77876867--77877092 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
77876857 TCGAATGATG
* * *
77876867 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77876907 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTTCTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77876947 TCCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77876987 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
77877027 TCCGGGTTAAGTCCTGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77877068 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77877093 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
39 2 0.01
40 150 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77877110 original size:80 final size:78
Alignment explanation
Indices: 77876874--77877125 Score: 224
Period size: 80 Copynumber: 3.2 Consensus size: 78
77876864 ATGTCCGGGC
* * * * * * **
77876874 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
1 TAAGT-CCGAAGGCATCTGTGC-GAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGA
* *
77876938 GTTTCTAAATCCGGAC
64 GTTACTAAATCCGG-T
* **
77876954 TAAGGTCCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAA-GTCCGAAGGCATCTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAG
77877019 TTACTAAATCCGGGT
65 TTACTAAATCC-GGT
* * *
77877034 TAAGTCCTGAAGGCATCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCC-GAAGGCATCTGTGCGAGTTACTA-AATCCAGACTAAGAT-CCGAAGGCATTTGAACG
*
77877097 AG-TAGCTATATCCGGT
63 AGTTA-CTAAATCCGGT
*
77877113 TAAACTCCGAAGG
1 T-AAGTCCGAAGG
77877126 TACGTGATTT
Statistics
Matches: 149, Mismatches: 15, Indels: 17
0.82 0.08 0.09
Matches are distributed among these distances:
79 16 0.11
80 120 0.81
81 13 0.09
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCGAAGGCATCTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGT
TACTAAATCCGGT
Found at i:77879944 original size:28 final size:29
Alignment explanation
Indices: 77879891--77879945 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
77879881 ATTTATTTCA
*
77879891 CAATTTAACCCCTTAATTTACACTTTTTT
1 CAATTTAACCCCTTAATATACACTTTTTT
* *
77879920 CAATTTAATCCC-TAATATGCACTTTT
1 CAATTTAACCCCTTAATATACACTTTT
77879946 ACTCAATATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (29 bp):
CAATTTAACCCCTTAATATACACTTTTTT
Found at i:77879951 original size:29 final size:29
Alignment explanation
Indices: 77879886--77879952 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
77879876 GTTTCATTTA
* *
77879886 TTTCACAATTTAACCCCTTAATTTACACT
1 TTTCTCAATTTAACCCCTTAATATACACT
* * *
77879915 TTTTTCAATTTAATCCC-TAATATGCACT
1 TTTCTCAATTTAACCCCTTAATATACACT
77879943 TTTACTCAAT
1 TTT-CTCAAT
77879953 ATCACTTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.30, C:0.24, G:0.01, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTTAATATACACT
Found at i:77880706 original size:21 final size:20
Alignment explanation
Indices: 77880667--77880708 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
77880657 TACATGTGTG
*
77880667 TTTTGATGTTTGATGATAGA
1 TTTTGATGCTTGATGATAGA
*
77880687 TTTTGAATGCTTGTTGATAGA
1 TTTTG-ATGCTTGATGATAGA
77880708 T
1 T
77880709 AAACAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (20 bp):
TTTTGATGCTTGATGATAGA
Found at i:77890536 original size:79 final size:80
Alignment explanation
Indices: 77890401--77890657 Score: 446
Period size: 79 Copynumber: 3.2 Consensus size: 80
77890391 AACCCAAGTA
* * * * *
77890401 CCTTCGGGAATTAG-CCAGATATAGCAACTAGCACAATTACCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
77890465 TAACTAGCACAATTG
66 TAACTAGCACAATTG
77890480 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTC-GGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
77890544 TAACTAGCACAATTG
66 TAACTAGCACAATTG
*
77890559 CCTTTGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
77890624 TAACTAGCACAATTG
66 TAACTAGCACAATTG
77890639 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77890658 TTATCATCCG
Statistics
Matches: 169, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
79 90 0.53
80 79 0.47
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
TAACTAGCACAATTG
Found at i:77890575 original size:119 final size:120
Alignment explanation
Indices: 77890401--77890661 Score: 445
Period size: 119 Copynumber: 2.2 Consensus size: 120
77890391 AACCCAAGTA
* * *
77890401 CCTTCGGGAATTAG-CCAGATATAGCAACTAGCACAATTACCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGTTATAGCAACTAGCACAATTACCTTCGGGACTTAGCCCGGATATAG
77890465 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
66 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
* * *
77890520 CCTTC-GGACTTAGCCCGGTTATAGTAACTAGCACAATTGCCTTTGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGTTATAGCAACTAGCACAATTACCTTCGGGACTTAGCCCGGATATAG
*
77890584 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAATTG
66 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77890639 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
77890662 CATCCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
118 7 0.05
119 109 0.82
120 17 0.13
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGTTATAGCAACTAGCACAATTACCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:77890661 original size:40 final size:40
Alignment explanation
Indices: 77890401--77890657 Score: 437
Period size: 40 Copynumber: 6.5 Consensus size: 40
77890391 AACCCAAGTA
* * * *
77890401 CCTTCGGGAATTAG-CCAGATATAGCAACTAGCACAATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77890440 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77890480 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
*
77890520 CCTTC-GGACTTAGCCCGGTTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
*
77890559 CCTTTGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
*
77890599 CCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77890639 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77890658 TTATCATCCG
Statistics
Matches: 207, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 50 0.24
40 157 0.76
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:77891202 original size:13 final size:13
Alignment explanation
Indices: 77891184--77891209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77891174 ATTTTTATTT
77891184 TTAACATAAAATA
1 TTAACATAAAATA
77891197 TTAACATAAAATA
1 TTAACATAAAATA
77891210 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:77897784 original size:79 final size:80
Alignment explanation
Indices: 77897682--77897976 Score: 481
Period size: 79 Copynumber: 3.7 Consensus size: 80
77897672 AACCCAAGTA
* *
77897682 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTGCCTTC-GGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAG
77897745 TAACTAGCACAATTG
66 TAACTAGCACAATTG
77897760 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAG
77897825 TAACTAGCACAA-TG
66 TAACTAGCACAATTG
* * * * *
77897839 CCTTTGGGACTTAGCTCGGTTATTGTAACTAGCACAATTTCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAG
77897904 TAACTAGCACAATTG
66 TAACTAGCACAATTG
* *
77897919 CCTTC-GGACTTAGCCCTGTTATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGG
77897977 TTATCATCCG
Statistics
Matches: 202, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
78 13 0.06
79 152 0.75
80 37 0.18
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAATTG
Found at i:77897978 original size:119 final size:120
Alignment explanation
Indices: 77897682--77897980 Score: 489
Period size: 119 Copynumber: 2.5 Consensus size: 120
77897672 AACCCAAGTA
* * *
77897682 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTGCCTTC-GGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
77897745 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
66 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
* * *
77897800 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAA-TGCCTTTGGGACTTAGCTCGGTTATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
*
77897864 TAACTAGCACAATTTCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
66 TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
* *
77897919 CCTTC-GGACTTAGCCCTGTTATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTAT
77897981 CATCCGAATA
Statistics
Matches: 167, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
118 48 0.29
119 119 0.71
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAG
TAACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:77897980 original size:40 final size:40
Alignment explanation
Indices: 77897682--77897976 Score: 481
Period size: 40 Copynumber: 7.5 Consensus size: 40
77897672 AACCCAAGTA
* *
77897682 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77897721 CCTTC-GGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77897760 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77897800 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAA-TG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
* * * * *
77897839 CCTTTGGGACTTAGCTCGGTTATTGTAACTAGCACAATTT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77897879 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
* *
77897919 CCTTC-GGACTTAGCCCTGTTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
77897958 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77897977 TTATCATCCG
Statistics
Matches: 237, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
38 7 0.03
39 106 0.45
40 124 0.52
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:77898529 original size:13 final size:13
Alignment explanation
Indices: 77898511--77898536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77898501 ATAATTTTTT
77898511 TTAACATAAAATA
1 TTAACATAAAATA
77898524 TTAACATAAAATA
1 TTAACATAAAATA
77898537 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:77902065 original size:39 final size:39
Alignment explanation
Indices: 77901890--77902061 Score: 290
Period size: 39 Copynumber: 4.4 Consensus size: 39
77901880 GCTTAAAGAC
*
77901890 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
*
77901929 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
* *
77901968 CCGCAGGCTATGCGCTGGAATTATACCCGGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
*
77902007 CCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
*
77902046 CCGCAGGCTACGTGCT
1 CCGCAGGCTATGTGCT
77902062 AGAAATATGT
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
Found at i:77902132 original size:117 final size:118
Alignment explanation
Indices: 77901876--77902138 Score: 284
Period size: 117 Copynumber: 2.3 Consensus size: 118
77901866 TGATGTGTAT
* * * * *
77901876 CCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTATA
1 CCGGACTTAAAGTCCCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGTCCGCAGGCTACA
* * * *
77901941 TGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTATGCGCTGGAATTATAC
66 TGCTAGAAATATAACCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATAC
* *
77901994 CCGGACTTAAGGT-CCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGTCCGCAGGCTACG
1 CCGGACTTAAAGTCCCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGTCCGCAGGCTACA
** * * **
77902058 TGCTAGAAATATGTCCGGGC-TAAAGTCCCGTAGGCT-TCGAGCTGGTGTTATA-
66 TGCTAGAAATATAACCGGACTTAAAGT-CCGCAGGCTAT-GAGCTGGAATTATAC
** * *
77902110 CCGGGTTTAAATTCCCGTAGGCT-TGTGCT
1 CCGGACTTAAAGTCCCGCAGGCTATGTGCT
77902139 GGTAATTGGT
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
116 21 0.17
117 89 0.74
118 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (118 bp):
CCGGACTTAAAGTCCCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGTCCGCAGGCTACA
TGCTAGAAATATAACCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATAC
Found at i:77904305 original size:43 final size:45
Alignment explanation
Indices: 77904258--77904350 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 45
77904248 TACTAGTAAC
* * *
77904258 CACATAT-T-GATGCCAATGTCCTAGACGTGGCCTTACACAAAAA
1 CACATATATCGATGCCAACGTCCCAGACGTGGCCTGACACAAAAA
* * *
77904301 CACATATATCGATGCCAACGTCCCAGATGTGGTCTGACACGAAAA
1 CACATATATCGATGCCAACGTCCCAGACGTGGCCTGACACAAAAA
77904346 CACAT
1 CACAT
77904351 CGGAATCCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 7 0.17
44 1 0.02
45 34 0.81
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (45 bp):
CACATATATCGATGCCAACGTCCCAGACGTGGCCTGACACAAAAA
Found at i:77905227 original size:25 final size:26
Alignment explanation
Indices: 77905199--77905253 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
77905189 TTAATTTATG
77905199 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
77905224 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
77905249 TTATA
1 TTATA
77905254 AATTATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:77906099 original size:9 final size:9
Alignment explanation
Indices: 77906085--77906109 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77906075 CAGCACCCAG
77906085 ATCACATAA
1 ATCACATAA
77906094 ATCACATAA
1 ATCACATAA
77906103 ATCACAT
1 ATCACAT
77906110 TTATCACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (9 bp):
ATCACATAA
Found at i:77919228 original size:25 final size:25
Alignment explanation
Indices: 77919200--77919247 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77919190 TTATACCATG
* * *
77919200 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77919225 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
77919248 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77919331 original size:11 final size:11
Alignment explanation
Indices: 77919295--77919350 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77919285 TATGGTATGT
77919295 ATGATATGCAC
1 ATGATATGCAC
* *
77919306 ATGACATG--T
1 ATGATATGCAC
77919315 ATGATATGCAC
1 ATGATATGCAC
*
77919326 ATGATATG--T
1 ATGATATGCAC
77919335 ATGATATGCAC
1 ATGATATGCAC
77919346 ATGAT
1 ATGAT
77919351 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:77919350 original size:20 final size:20
Alignment explanation
Indices: 77919290--77919350 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
77919280 ATAAATATGG
77919290 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
77919310 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77919330 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77919350 T
1 T
77919351 GTAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:77919427 original size:24 final size:24
Alignment explanation
Indices: 77919400--77919542 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
77919390 GAGGAAGTGA
77919400 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
77919424 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
77919448 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
77919471 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
77919495 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
77919519 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77919543 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:77919493 original size:47 final size:47
Alignment explanation
Indices: 77919400--77919542 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
77919390 GAGGAAGTGA
77919400 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
77919448 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
77919495 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
77919543 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:77919516 original size:71 final size:72
Alignment explanation
Indices: 77919400--77919543 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
77919390 GAGGAAGTGA
*
77919400 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
77919463 CCAGTTAT
65 CCAGTTAT
** * *
77919471 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
77919536 CAGTTAT
66 CAGTTAT
77919543 A
1 A
77919544 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:77923851 original size:17 final size:18
Alignment explanation
Indices: 77923829--77923870 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
77923819 GCACTTAAGA
*
77923829 TATGGAGGCATTA-CCTG
1 TATGGAGGCATTATCCTC
77923846 TATGGAGGCATTATCCTC
1 TATGGAGGCATTATCCTC
77923864 TATGGAG
1 TATGGAG
77923871 AGAAATGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (18 bp):
TATGGAGGCATTATCCTC
Found at i:77925938 original size:25 final size:25
Alignment explanation
Indices: 77925910--77925957 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77925900 TTATACCATG
* * *
77925910 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77925935 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
77925958 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77926060 original size:20 final size:20
Alignment explanation
Indices: 77926000--77926060 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
77925990 ATAAATATGG
*
77926000 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
77926020 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77926040 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77926060 T
1 T
77926061 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:77926185 original size:24 final size:23
Alignment explanation
Indices: 77926109--77926272 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
77926099 GGAGGAAGTG
77926109 AAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77926131 CAAAAGGGCTTATGCCCCAG-T-T
1 -AAAAGGGCTTATGCCCCAGTTAT
77926153 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77926176 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
77926200 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
77926224 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
77926248 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77926272 A
1 A
77926273 TGATAAAGCA
Statistics
Matches: 129, Mismatches: 5, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
21 19 0.15
22 2 0.02
23 37 0.29
24 61 0.47
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:77926221 original size:47 final size:47
Alignment explanation
Indices: 77926109--77926271 Score: 235
Period size: 47 Copynumber: 3.5 Consensus size: 47
77926099 GGAGGAAGTG
77926109 AAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAG-T-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
77926153 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
77926200 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
77926248 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77926272 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
44 13 0.12
45 29 0.27
46 1 0.01
47 44 0.40
48 11 0.10
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:77931814 original size:8 final size:8
Alignment explanation
Indices: 77931801--77931833 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
77931791 ACATGCCATA
77931801 GTTTTAGG
1 GTTTTAGG
77931809 GTTTTAGG
1 GTTTTAGG
77931817 GTTTTAGG
1 GTTTTAGG
77931825 GTTTTAGG
1 GTTTTAGG
77931833 G
1 G
77931834 CCAACTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (8 bp):
GTTTTAGG
Found at i:77936361 original size:39 final size:40
Alignment explanation
Indices: 77936261--77936442 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
77936251 TCGAATGATG
* * *
77936261 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
77936301 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
77936341 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
77936379 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
77936420 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77936443 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:77936406 original size:78 final size:80
Alignment explanation
Indices: 77936261--77936442 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
77936251 TCGAATGATG
* * * *
77936261 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
77936326 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
77936341 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
77936403 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
77936420 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77936443 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:77944387 original size:39 final size:40
Alignment explanation
Indices: 77944287--77944468 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
77944277 TCGAATGATG
* * *
77944287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
77944327 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
77944367 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
77944405 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
77944446 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77944469 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:77944432 original size:78 final size:80
Alignment explanation
Indices: 77944287--77944468 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
77944277 TCGAATGATG
* * * *
77944287 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
77944352 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
77944367 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
77944429 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
77944446 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77944469 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:77951167 original size:46 final size:46
Alignment explanation
Indices: 77951100--77951193 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
77951090 CTACAGAAGG
77951100 TTTAGGAGGATTAAAAGAGCGATCTGATAAATACAATTATTCAAAT
1 TTTAGGAGGATTAAAAGAGCGATCTGATAAATACAATTATTCAAAT
77951146 TTTAGGAGGATTAAAAGAGCGATCTGATAAATACAATTATTCAAAT
1 TTTAGGAGGATTAAAAGAGCGATCTGATAAATACAATTATTCAAAT
77951192 TT
1 TT
77951194 CTTCCCTGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (46 bp):
TTTAGGAGGATTAAAAGAGCGATCTGATAAATACAATTATTCAAAT
Found at i:77953558 original size:15 final size:15
Alignment explanation
Indices: 77953538--77953575 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
77953528 GGATTCAATG
*
77953538 GATCATTCAGACCAA
1 GATCATTCAAACCAA
*
77953553 GATCATTCAAACCAG
1 GATCATTCAAACCAA
77953568 GATCATTC
1 GATCATTC
77953576 CCTTCCCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (15 bp):
GATCATTCAAACCAA
Found at i:77959435 original size:24 final size:26
Alignment explanation
Indices: 77959372--77959440 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 26
77959362 GGACTCACCA
*
77959372 CAGCTCGTATGGGCTTACTGATATAC
1 CAGCTCGTATGAGCTTACTGATATAC
*
77959398 CAGCTCGTAAGAGCTTACTG-T-T-C
1 CAGCTCGTATGAGCTTACTGATATAC
*
77959421 TTAGCTCGTATGAGCTTACT
1 -CAGCTCGTATGAGCTTACT
77959441 ATTTAGCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 1 0.03
26 18 0.47
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
CAGCTCGTATGAGCTTACTGATATAC
Found at i:77962755 original size:6 final size:6
Alignment explanation
Indices: 77962713--77962738 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
77962703 TAGACAAGGT
77962713 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
77962739 TCTAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:77971011 original size:38 final size:39
Alignment explanation
Indices: 77970926--77971011 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
77970916 GGACTTTAGC
* * * *
77970926 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
77970965 CCGGATATAATTCCAGCACATAGCCTGCGG-CCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
77971003 CCGGATATA
1 CCGGATATA
77971012 CATCACTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 16 0.37
39 27 0.63
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:77975783 original size:17 final size:18
Alignment explanation
Indices: 77975761--77975796 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77975751 GCCAATTTGA
77975761 GTGTGTAGG-CCACACAG
1 GTGTGTAGGCCCACACAG
*
77975778 GTGTGTGGGCCCACACAG
1 GTGTGTAGGCCCACACAG
77975796 G
1 G
77975797 CATATGGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.25, G:0.39, T:0.17
Consensus pattern (18 bp):
GTGTGTAGGCCCACACAG
Found at i:77978423 original size:15 final size:15
Alignment explanation
Indices: 77978403--77978452 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
77978393 TATTTTAAGA
77978403 TATATTTTAATCATT
1 TATATTTTAATCATT
*
77978418 TATA-TTTAA-AATAT
1 TATATTTTAATCAT-T
* *
77978432 TATGTTTTAGTCATT
1 TATATTTTAATCATT
77978447 TATATT
1 TATATT
77978453 ATTATGTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
13 2 0.07
14 9 0.33
15 14 0.52
16 2 0.07
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (15 bp):
TATATTTTAATCATT
Found at i:77984563 original size:13 final size:13
Alignment explanation
Indices: 77984545--77984609 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
77984535 AGTTTGGCAA
77984545 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
77984558 TGCTTTTGGAAAG
1 TGCTTTTGAAAAG
*
77984571 TGC-TGTGAAAAAAG
1 TGCTTTTG--AAAAG
* *
77984585 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
77984598 TACTTTTGAAAA
1 TGCTTTTGAAAA
77984610 ATTTGGTTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
12 3 0.07
13 30 0.71
14 6 0.14
15 3 0.07
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:77984885 original size:20 final size:21
Alignment explanation
Indices: 77984857--77984907 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
77984847 GTAAAATTTA
77984857 ATTAGAATATATAAACTAT-ATT
1 ATTA-AATATATAAA-TATAATT
*
77984879 -TTAAATATTTAAATATAATT
1 ATTAAATATATAAATATAATT
77984899 ATTAAATAT
1 ATTAAATAT
77984908 TTGTAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 11 0.42
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTAAATATATAAATATAATT
Found at i:77984905 original size:21 final size:21
Alignment explanation
Indices: 77984857--77984909 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
77984847 GTAAAATTTA
*
77984857 ATTAGAATATATAAACTATATT
1 ATTA-AATATTTAAACTATATT
77984879 -TTAAATATTTAAA-TATAATT
1 ATTAAATATTTAAACTAT-ATT
77984899 ATTAAATATTT
1 ATTAAATATTT
77984910 GTAATTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTAAATATTTAAACTATATT
Found at i:77987889 original size:25 final size:24
Alignment explanation
Indices: 77987836--77987890 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
77987826 TTTGATTCTC
* *
77987836 AATTTTTTAAAAAAGTTAATTTAT
1 AATTTTTTAAAAAAGATAATTTAA
*
77987860 TATTTTTTAATAAAA-ATAATTTTAA
1 AATTTTTTAA-AAAAGATAA-TTTAA
77987885 AATTTT
1 AATTTT
77987891 AAAATTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTTTTTAAAAAAGATAATTTAA
Found at i:77987890 original size:8 final size:8
Alignment explanation
Indices: 77987877--77987901 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
77987867 TAATAAAAAT
77987877 AATTTTAA
1 AATTTTAA
77987885 AATTTTAA
1 AATTTTAA
77987893 AATTTTAA
1 AATTTTAA
77987901 A
1 A
77987902 CATGGTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:77993630 original size:29 final size:27
Alignment explanation
Indices: 77993596--77993698 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
77993586 TACTCAATCA
*
77993596 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
77993625 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
77993654 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
77993683 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
77993699 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:78001430 original size:29 final size:27
Alignment explanation
Indices: 78001396--78001498 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
78001386 TACTCAATCA
*
78001396 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
78001425 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
78001454 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
78001483 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78001499 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:78007957 original size:50 final size:49
Alignment explanation
Indices: 78007850--78008030 Score: 236
Period size: 49 Copynumber: 3.7 Consensus size: 49
78007840 CTGGTACGCA
* * * *
78007850 TAGTAGCCTGAACTTAGTATTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* ** *
78007899 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACACG
* * *
78007949 TAGTAGCCTGCACTTAGTATTATACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* *
78007998 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
78008031 TCACAATAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 70 0.63
50 41 0.37
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
Found at i:78008012 original size:99 final size:99
Alignment explanation
Indices: 78007850--78008031 Score: 328
Period size: 99 Copynumber: 1.8 Consensus size: 99
78007840 CTGGTACGCA
* *
78007850 TAGTAGCCTGAACTTAGTATTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGAACTTAGTATTACACATGCGACCAATTATCCGATACACGTAGTAGCCTACACTTA
78007915 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* *
78007949 TAGTAGCCTGCACTTAGTATTATACATGCGACCAATTATCCGATACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGAACTTAGTATTACACATGCGACCAATTATCCGATACACGTAGTAGCCTACACTTA
78008014 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
78008032 CACAATAGAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGAACTTAGTATTACACATGCGACCAATTATCCGATACACGTAGTAGCCTACACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:78009874 original size:19 final size:19
Alignment explanation
Indices: 78009852--78009910 Score: 109
Period size: 19 Copynumber: 3.1 Consensus size: 19
78009842 GACACAGGCG
78009852 TGTCAAGAGCACACGGGCT
1 TGTCAAGAGCACACGGGCT
*
78009871 TGTCAAGAGCATACGGGCT
1 TGTCAAGAGCACACGGGCT
78009890 TGTCAAGAGCACACGGGCT
1 TGTCAAGAGCACACGGGCT
78009909 TG
1 TG
78009911 GTACCTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.25, C:0.24, G:0.32, T:0.19
Consensus pattern (19 bp):
TGTCAAGAGCACACGGGCT
Found at i:78013022 original size:40 final size:38
Alignment explanation
Indices: 78012972--78013072 Score: 121
Period size: 40 Copynumber: 2.6 Consensus size: 38
78012962 CGGATTTTAT
* *
78012972 AATTATAATTACTATAATTATAATAATGTTTGACTGAAAA
1 AATTATAATTACAATAATTATAATAATATTTGACTG--AA
* * * * *
78013012 AATTACAATTACAATAATTATGATAATATTTTATTGTA
1 AATTATAATTACAATAATTATAATAATATTTGACTGAA
78013050 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
78013073 CAAGGATTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 22 0.42
40 30 0.58
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTTGACTGAA
Found at i:78015516 original size:19 final size:20
Alignment explanation
Indices: 78015478--78015516 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
78015468 CTAAGGACTA
*
78015478 TAAAATAGATGATAAATGTG
1 TAAAATAGATGAGAAATGTG
*
78015498 TAAAATA-ATGAGAATTGTG
1 TAAAATAGATGAGAAATGTG
78015517 GGTTGCTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.31
Consensus pattern (20 bp):
TAAAATAGATGAGAAATGTG
Found at i:78018982 original size:28 final size:27
Alignment explanation
Indices: 78018917--78018986 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
78018907 ATAGTGAGTC
78018917 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78018944 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
78018972 CGCACAATTAGTGCT
1 CGCACACTTAGTGCT
78018987 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78023050 original size:92 final size:92
Alignment explanation
Indices: 78022938--78023109 Score: 308
Period size: 92 Copynumber: 1.9 Consensus size: 92
78022928 CGCCCATAAG
***
78022938 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78023003 ACGAGTTCGGATGCTAGTTACATCTCA
66 ACGAGTTCGGATGCTAGTTACATCTCA
*
78023030 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78023095 ACGAGTTCGGATGCT
66 ACGAGTTCGGATGCT
78023110 CAACCATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCTAGTTACATCTCA
Found at i:78023105 original size:46 final size:46
Alignment explanation
Indices: 78022931--78023105 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
78022921 TGTAACCCGC
* ***
78022931 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
78022977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--C-A-TTCGCAT
*
78023026 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78023069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78023106 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 92 0.84
47 2 0.02
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78030594 original size:93 final size:93
Alignment explanation
Indices: 78030481--78030652 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78030471 CGCCCATAAG
* *
78030481 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78030546 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
78030574 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78030639 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
78030653 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:78030649 original size:46 final size:46
Alignment explanation
Indices: 78030474--78030649 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
78030464 TGTAACCCGC
* * *
78030474 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
78030520 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
78030570 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78030613 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78030650 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78032077 original size:17 final size:18
Alignment explanation
Indices: 78032055--78032088 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78032045 CACATTGAAG
78032055 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
78032072 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
78032089 CTTCAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:78033160 original size:28 final size:28
Alignment explanation
Indices: 78033124--78033198 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
78033114 TGTCCCCTTT
* *
78033124 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATAGCCCATC
78033152 -GGCCCCAATCACATTCATATAGCCCATC
1 AGG-CCCAATCACATTCATATAGCCCATC
*
78033180 AGGCCTAATCACATTCATA
1 AGGCCCAATCACATTCATA
78033199 GTCATGCAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.05
28 38 0.90
29 2 0.05
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATAGCCCATC
Found at i:78033452 original size:16 final size:16
Alignment explanation
Indices: 78033419--78033453 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
78033409 ACTTTCGGCT
*
78033419 TTTCGGCATTTCGGGA
1 TTTCGGCATTTCGAGA
*
78033435 TTTCGGTATTTCGAGA
1 TTTCGGCATTTCGAGA
78033451 TTT
1 TTT
78033454 GCCGGTCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.26, T:0.46
Consensus pattern (16 bp):
TTTCGGCATTTCGAGA
Found at i:78041002 original size:16 final size:16
Alignment explanation
Indices: 78040981--78041013 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
78040971 CAAACTTTTG
78040981 GCTTTTCAGTATTTCA
1 GCTTTTCAGTATTTCA
*
78040997 GCTTTTCGGTATTTCA
1 GCTTTTCAGTATTTCA
78041013 G
1 G
78041014 GATTTCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (16 bp):
GCTTTTCAGTATTTCA
Found at i:78047038 original size:40 final size:40
Alignment explanation
Indices: 78046846--78047070 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
78046836 TCGAATGATG
* * *
78046846 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
78046886 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78046926 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78046966 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78047005 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78047046 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78047071 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78047069 original size:119 final size:120
Alignment explanation
Indices: 78046848--78047070 Score: 285
Period size: 119 Copynumber: 1.9 Consensus size: 120
78046838 GAATGATGTC
* *
78046848 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
78046913 ACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTT
66 ACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTT
* * **
78046968 CGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
** * *
78047030 GTGTGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 GTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
78047071 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.79
120 17 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
ACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTT
Found at i:78047092 original size:79 final size:79
Alignment explanation
Indices: 78046853--78047103 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 79
78046843 ATGTCCGGGC
* * *
78046853 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTACG
1 TAAGTCCCGAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTACG
*
78046916 AGTTACTAAATCCGGAC
64 AGTTACTAAATCCGG-T
* * * *
78046933 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTTCGGGCTAAG-CCCGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGTGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTACG
78046995 AGTTACTAAATCCGGGT
64 AGTTACTAAATCC-GGT
* * *
78047012 TAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
*
78047077 -TAGCTATATCCGGT
66 TTA-CTAAATCCGGT
* *
78047091 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
78047104 TACGTGATTC
Statistics
Matches: 144, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
78 1 0.01
79 81 0.56
80 55 0.38
81 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
TTACTAAATCCGGT
Found at i:78052249 original size:40 final size:43
Alignment explanation
Indices: 78052205--78052299 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
78052195 TACAAAACTT
* *
78052205 AGTGTGCGA-ATTGAAATAGCTTTT-GTTTTATGTG-G-CACTA
1 AGTGTGCGATACTGAAATAG-TTTTGGTTTAATGTGTGACACTA
*
78052245 AGTGTGCGATACTGAGATAGTTTTGGTTTAATGTGTTGACACTA
1 AGTGTGCGATACTGAAATAGTTTTGGTTTAATGTG-TGACACTA
78052289 AGTGTGCGATA
1 AGTGTGCGATA
78052300 TCATTATAGC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 13 0.28
41 17 0.36
43 1 0.02
44 16 0.34
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.38
Consensus pattern (43 bp):
AGTGTGCGATACTGAAATAGTTTTGGTTTAATGTGTGACACTA
Found at i:78052932 original size:23 final size:23
Alignment explanation
Indices: 78052906--78052949 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
78052896 AATGATTTGG
*
78052906 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
78052929 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
78052950 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Done.