Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 268 of 378
Found at i:80419833 original size:23 final size:23
Alignment explanation
Indices: 80419803--80419847 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
80419793 CCCAAATATG
80419803 AAAACACATATA-TTTCATTTAC
1 AAAACACATATACTTTCATTTAC
80419825 AAAATCACATATACTTTTCATTT
1 AAAA-CACATATAC-TTTCATTT
80419848 GGCTAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
25 8 0.40
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAACACATATACTTTCATTTAC
Found at i:80420237 original size:43 final size:43
Alignment explanation
Indices: 80420126--80420343 Score: 269
Period size: 43 Copynumber: 5.1 Consensus size: 43
80420116 ATATGGTACA
* * * * *
80420126 ATGCCAACGTCCCTGATGTGGTCTTACATGTAATCTCATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * * *
80420169 ATGCC-ACTGTCCCAAACAG-GATCTTACTCATAAACACATATAG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
80420212 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
80420255 ATGCTAACGTCCCAGACGTGGTCTTACACGTAATCACATACCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
80420298 ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
80420341 ATG
1 ATG
80420344 TCTATATGCA
Statistics
Matches: 149, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
42 3 0.02
43 143 0.96
44 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:80425474 original size:13 final size:13
Alignment explanation
Indices: 80425456--80425481 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80425446 TGTGTTTCCA
80425456 AAAACCATTTGTT
1 AAAACCATTTGTT
80425469 AAAACCATTTGTT
1 AAAACCATTTGTT
80425482 GTATAAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:80426321 original size:18 final size:18
Alignment explanation
Indices: 80426298--80426342 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
80426288 TCCAGAATCT
*
80426298 TGGGCCCACATGCTCGTA
1 TGGGCCCACATGCCCGTA
* *
80426316 TGGGCCCATATGCCCGTG
1 TGGGCCCACATGCCCGTA
80426334 T-GGCCCACA
1 TGGGCCCACA
80426343 CGTCAGATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.20
Consensus pattern (18 bp):
TGGGCCCACATGCCCGTA
Found at i:80429308 original size:48 final size:48
Alignment explanation
Indices: 80429237--80429572 Score: 564
Period size: 48 Copynumber: 7.0 Consensus size: 48
80429227 ATAAACATAT
* * *
80429237 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80429285 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
80429333 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80429381 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
80429429 ATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80429477 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80429525 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
80429573 TGTTGTAACA
Statistics
Matches: 273, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 273 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80429667 original size:37 final size:37
Alignment explanation
Indices: 80429617--80429761 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
80429607 GGAAATATAT
*
80429617 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
80429654 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80429691 TCCGGGTAAGACCCGATGGCTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80429728 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
80429762 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80433401 original size:39 final size:39
Alignment explanation
Indices: 80433358--80433443 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
80433348 ATTCACTTTC
* * * *
80433358 AAGCATATACCATATTACATATATAATCACCTAACATAT-
1 AAGCATATACCACAATACACATATAATCACATAACAT-TG
* *
80433397 AAGCATATATCACAATACCCATATAATCACATAACATTG
1 AAGCATATACCACAATACACATATAATCACATAACATTG
80433436 AAGCATAT
1 AAGCATAT
80433444 GTCGCAATAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
38 1 0.03
39 39 0.98
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (39 bp):
AAGCATATACCACAATACACATATAATCACATAACATTG
Found at i:80433452 original size:39 final size:39
Alignment explanation
Indices: 80433378--80433453 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
80433368 CATATTACAT
*
80433378 ATATAATCACCTAACATATAAGCATATATCACAATACCC
1 ATATAATCACATAACATATAAGCATATATCACAATACCC
* *
80433417 ATATAATCACATAACAT-TGAAGCATATGTCGCAATAC
1 ATATAATCACATAACATAT-AAGCATATATCACAATAC
80433454 TCGAAAACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (39 bp):
ATATAATCACATAACATATAAGCATATATCACAATACCC
Found at i:80433647 original size:67 final size:67
Alignment explanation
Indices: 80433509--80433661 Score: 191
Period size: 67 Copynumber: 2.3 Consensus size: 67
80433499 ATAAACAAAT
* * * * * * **
80433509 ATCACAATACACATATATTCATAATTTAGGATAATTTGCATAGTAACCACACACTCATTTGGGTA
1 ATCACATTACACATATATACAT-ATTTAAGATAATTTGCATAGAAACCACACAATCATTTAGACA
80433574 TAC
65 TAC
*
80433577 ATCACATTACACATATATACAT-TTTAAGATAATTTGCATAGGAAACCACATAATCATTTAGACA
1 ATCACATTACACATATATACATATTTAAGATAATTTGCATA-GAAACCACACAATCATTTAGACA
*
80433641 TTC
65 TAC
80433644 ATCACATTACACATATAT
1 ATCACATTACACATATAT
80433662 CACAATACAC
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
66 17 0.23
67 37 0.50
68 20 0.27
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (67 bp):
ATCACATTACACATATATACATATTTAAGATAATTTGCATAGAAACCACACAATCATTTAGACAT
AC
Found at i:80436631 original size:6 final size:6
Alignment explanation
Indices: 80436620--80436667 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
80436610 TAACTCTAAG
*
80436620 AAAATA AAAATA AACATA AAAATA AAAATAAA AAAATAA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAAT--A AAAAT-A AAAATA AAA
80436668 CAAATAGACT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 25 0.66
7 7 0.18
8 6 0.16
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:80436661 original size:15 final size:15
Alignment explanation
Indices: 80436637--80436673 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
80436627 AAATAAACAT
80436637 AAAAAT-AAAAATAA
1 AAAAATAAAAAATAA
80436651 AAAAATAAAAAATAA
1 AAAAATAAAAAATAA
80436666 AACAAATA
1 AA-AAATA
80436674 GACTCAACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.29
15 10 0.48
16 5 0.24
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAATAAAAAATAA
Found at i:80439381 original size:32 final size:32
Alignment explanation
Indices: 80439342--80439405 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
80439332 TTTAAAATAA
80439342 CATGAAATAAAATTAAGAAAATTAACAGTGTT
1 CATGAAATAAAATTAAGAAAATTAACAGTGTT
*
80439374 CATGAAATAAAATTAAGAAAATTAGCAGTGTT
1 CATGAAATAAAATTAAGAAAATTAACAGTGTT
80439406 AACACTCGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.28
Consensus pattern (32 bp):
CATGAAATAAAATTAAGAAAATTAACAGTGTT
Found at i:80439949 original size:96 final size:96
Alignment explanation
Indices: 80439780--80439962 Score: 312
Period size: 96 Copynumber: 1.9 Consensus size: 96
80439770 TCCGCCATTT
*
80439780 GTCTAGTTCATCAATCTATAACATTCGTTCTTCATGAGTTGTTCTGTTTCTGTCGCATGGGCTGG
1 GTCTAGTTCATCAATCTATAACATTCGTTCTTCACGAGTTGTTCTGTTTCTGTCGCATGGGCTGG
*
80439845 AATGTGGCTCCATCACATTTTTTTGAGATTC
66 AATATGGCTCCATCACATTTTTTTGAGATTC
* * *
80439876 GTCTAGTTCATCGATCTATAACATTTGTTCTTCACGAGTTGTTCTGTTTTTGTCGCATGGGCTGG
1 GTCTAGTTCATCAATCTATAACATTCGTTCTTCACGAGTTGTTCTGTTTCTGTCGCATGGGCTGG
*
80439941 AATATGGCTCCATCATATTTTT
66 AATATGGCTCCATCACATTTTT
80439963 CCAAGGGGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 81 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (96 bp):
GTCTAGTTCATCAATCTATAACATTCGTTCTTCACGAGTTGTTCTGTTTCTGTCGCATGGGCTGG
AATATGGCTCCATCACATTTTTTTGAGATTC
Found at i:80445083 original size:16 final size:17
Alignment explanation
Indices: 80445059--80445092 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
80445049 TAATAATAAG
*
80445059 ATTCGTCTTAGGT-TTT
1 ATTCCTCTTAGGTATTT
80445075 ATTCCTCTTAGGTATTT
1 ATTCCTCTTAGGTATTT
80445092 A
1 A
80445093 GGGGGTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTT
Found at i:80455190 original size:40 final size:39
Alignment explanation
Indices: 80455146--80455338 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
80455136 GTTCAAAACA
* * ** * *
80455146 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
80455186 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
80455226 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
80455265 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
80455304 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
80455339 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:80455257 original size:39 final size:39
Alignment explanation
Indices: 80455176--80455338 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
80455166 TATGGTAACC
* *
80455176 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80455216 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80455255 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80455294 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80455333 CGCACA
1 CGCACA
80455339 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80458228 original size:9 final size:9
Alignment explanation
Indices: 80458214--80458246 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
80458204 GTTTGGAGAG
80458214 GATGATGTA
1 GATGATGTA
80458223 GATGATGTA
1 GATGATGTA
*
80458232 GATAATGTA
1 GATGATGTA
80458241 GATGAT
1 GATGAT
80458247 TAAGTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (9 bp):
GATGATGTA
Found at i:80467054 original size:27 final size:27
Alignment explanation
Indices: 80467016--80467069 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80467006 TTCTTCAGGG
80467016 AATGAATCATTTATTTCAATGTCATCT
1 AATGAATCATTTATTTCAATGTCATCT
80467043 AATGAATCATTTATTTCAATGTCATCT
1 AATGAATCATTTATTTCAATGTCATCT
80467070 GGCTCTTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (27 bp):
AATGAATCATTTATTTCAATGTCATCT
Found at i:80472865 original size:15 final size:15
Alignment explanation
Indices: 80472845--80472875 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80472835 GGTTGATAAT
80472845 GTTAAGTCTAAACTA
1 GTTAAGTCTAAACTA
*
80472860 GTTAAGTCTGAACTA
1 GTTAAGTCTAAACTA
80472875 G
1 G
80472876 ATATATACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (15 bp):
GTTAAGTCTAAACTA
Found at i:80475143 original size:24 final size:24
Alignment explanation
Indices: 80475116--80475178 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
80475106 CTTATTATGT
*
80475116 TCGCTCACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
80475140 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
80475164 TCGCACACATAGTGC
1 TCGCACACATAGTGC
80475179 ATTTGAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:80479002 original size:5 final size:6
Alignment explanation
Indices: 80478988--80479018 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
80478978 GAAAGAAAAG
80478988 AAAATA AAAATA AAAATA AAAAT- AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
80479019 CATTAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:80479005 original size:12 final size:11
Alignment explanation
Indices: 80478983--80479018 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
80478973 GTGCCGAAAG
*
80478983 AAAAGAAAATA
1 AAAATAAAATA
80478994 AAAATAAAAATA
1 AAAAT-AAAATA
80479006 AAAATAAAATA
1 AAAATAAAATA
80479017 AA
1 AA
80479019 CATTAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:80479538 original size:23 final size:23
Alignment explanation
Indices: 80479489--80479538 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
80479479 TGCTAACATA
** ***
80479489 TAAACGAACATGTTCGTGAATGT
1 TAAACGAACATGTTCACGAACAC
80479512 TAAACGAACATGTTCACGAACAC
1 TAAACGAACATGTTCACGAACAC
80479535 TAAA
1 TAAA
80479539 TGAATCGAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (23 bp):
TAAACGAACATGTTCACGAACAC
Found at i:80491417 original size:40 final size:40
Alignment explanation
Indices: 80491372--80491538 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80491362 CGGAATATAA
80491372 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
80491412 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
80491452 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80491492 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80491531 CCGGATAT
1 CCGGATAT
80491539 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80491522 original size:80 final size:79
Alignment explanation
Indices: 80491372--80491538 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
80491362 CGGAATATAA
* *
80491372 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
80491437 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
80491452 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
80491514 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
80491531 CCGGATAT
1 CCGGATAT
80491539 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:80492384 original size:17 final size:19
Alignment explanation
Indices: 80492361--80492406 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
80492351 AAGAAGCATG
80492361 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
80492379 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
80492397 AATCATGCTC
1 AATCATGCTC
80492407 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:80499411 original size:40 final size:40
Alignment explanation
Indices: 80499366--80499532 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80499356 CGGAATATAA
80499366 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
80499406 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
80499446 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80499486 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80499525 CCGGATAT
1 CCGGATAT
80499533 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80499516 original size:80 final size:79
Alignment explanation
Indices: 80499366--80499532 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
80499356 CGGAATATAA
* *
80499366 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
80499431 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
80499446 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
80499508 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
80499525 CCGGATAT
1 CCGGATAT
80499533 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:80500376 original size:17 final size:19
Alignment explanation
Indices: 80500353--80500398 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
80500343 AAGAAGCATG
80500353 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
80500371 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
80500389 AATCATGCTC
1 AATCATGCTC
80500399 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:80509029 original size:46 final size:48
Alignment explanation
Indices: 80508978--80509108 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
80508968 ATGTTTGGGC
*
80508978 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* *
80509025 -TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG
*
80509070 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80509109 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 28 0.40
47 27 0.39
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:80514557 original size:43 final size:43
Alignment explanation
Indices: 80514491--80514577 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
80514481 TGATGATCCT
* * * * *
80514491 CGAGTCTGAGCTTGCTTTGATAATCTGTAAAATAGAGAACGAA
1 CGAGTCTGAACTAGCTTTAATAATCTATAAAACAGAGAACGAA
*
80514534 CGAGTCTGAACTAGCTTTAATAATCTATAAAACAGAGAATGAA
1 CGAGTCTGAACTAGCTTTAATAATCTATAAAACAGAGAACGAA
80514577 C
1 C
80514578 ACACAAAGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (43 bp):
CGAGTCTGAACTAGCTTTAATAATCTATAAAACAGAGAACGAA
Found at i:80514945 original size:43 final size:43
Alignment explanation
Indices: 80514877--80515039 Score: 150
Period size: 43 Copynumber: 3.8 Consensus size: 43
80514867 AGAGCTCATA
* * * * *
80514877 CAATGCC-ATATCCCAGATATAGTCTTACATGTTATCATATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATAT
* * * *
80514919 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCATATAA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATAT
* * * * *
80514962 CGATGCCAATTTCCTAGAAATGGTCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATAT
* * *
80515004 ACAATTCCAATGTCCCAGACATGGCCTTACATGTAA
1 -CAATGCCAATGTCCCAGACATGGTCTTACACGTAA
80515040 CCTCATCTCG
Statistics
Matches: 94, Mismatches: 25, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
42 8 0.09
43 86 0.91
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATAT
Found at i:80520033 original size:17 final size:17
Alignment explanation
Indices: 80520011--80520045 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80520001 AACCCATAGT
80520011 AGTCTTTGAATGACTAA
1 AGTCTTTGAATGACTAA
80520028 AGTCTTTGAATGACTAA
1 AGTCTTTGAATGACTAA
80520045 A
1 A
80520046 CCCATAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (17 bp):
AGTCTTTGAATGACTAA
Found at i:80522486 original size:43 final size:43
Alignment explanation
Indices: 80522439--80522585 Score: 179
Period size: 43 Copynumber: 3.4 Consensus size: 43
80522429 TATCCCAGAT
* * *
80522439 ATGGTCTTATATGTTATCATATATCGATGCCAACGTCCCAAAC
1 ATGGTCTTACATGTAATCATATATCGATGCCAATGTCCCAAAC
* * * *
80522482 ATGGTCTTACATGAAATCATATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCATATATCGATGCCAATGTCCCAAAC
* * * *
80522525 ATGGTCTTACATGTAATCACA-ATACAATTCCAATGTCCGAAAC
1 ATGGTCTTACATGTAATCATATAT-CGATGCCAATGTCCCAAAC
80522568 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
80522586 TCATCTCGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 1 0.01
43 88 0.99
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCATATATCGATGCCAATGTCCCAAAC
Found at i:80523108 original size:29 final size:27
Alignment explanation
Indices: 80523075--80523129 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
80523065 ATTTATTTGA
*
80523075 CAATTTAACCCCTCAATTTACACTTTTTT
1 CAATTTAACCCCT-AATTGACA-TTTTTT
*
80523104 CAATTTAATCCCTAATTGACATTTTT
1 CAATTTAACCCCTAATTGACATTTTT
80523130 GTAAAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 7 0.29
29 12 0.50
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (27 bp):
CAATTTAACCCCTAATTGACATTTTTT
Found at i:80524047 original size:9 final size:9
Alignment explanation
Indices: 80524033--80524057 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
80524023 GGGAAATAAT
80524033 AAAATTATA
1 AAAATTATA
80524042 AAAATTATA
1 AAAATTATA
80524051 AAAATTA
1 AAAATTA
80524058 AGCTGAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:80526575 original size:2 final size:2
Alignment explanation
Indices: 80526568--80526592 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80526558 CTTAAACATG
80526568 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
80526593 AATTCACTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80528759 original size:3 final size:3
Alignment explanation
Indices: 80528751--80528788 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
80528741 ATTAAAATAT
80528751 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
80528789 TCAATTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:80531864 original size:27 final size:27
Alignment explanation
Indices: 80531824--80532047 Score: 276
Period size: 27 Copynumber: 8.2 Consensus size: 27
80531814 AGGAAGCGTC
*
80531824 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
80531851 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
80531877 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
80531905 CTGGTGGCTCTGCCACACAATTATCTGAT
1 CTGGTGGCTCTGCCACA-AA-TATCTGAT
* *
80531934 CTGGTGGCTCTGCCATATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
80531960 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
*
80531988 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAAATATCTGA-T
*
80532015 CTGATGGCTCTGCCAC-AATATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
80532042 CTGGTG
1 CTGGTG
80532048 ACTTCGTCAC
Statistics
Matches: 169, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.05
27 131 0.78
28 5 0.03
29 24 0.14
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:80531954 original size:83 final size:81
Alignment explanation
Indices: 80531824--80532039 Score: 355
Period size: 83 Copynumber: 2.7 Consensus size: 81
80531814 AGGAAGCGTC
*
80531824 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
80531889 GCCACAATTATCTGAT
66 GCCACAATTATCTGAT
*
80531905 CTGGTGGCTCTGCCACACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTCCTGGTGGCT
1 CTGGTGGCTCTGCCACA-AA-TATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCT
80531970 ATGCCACAATTATCTGAT
64 ATGCCACAATTATCTGAT
* *
80531988 CTGGTGGCTCTGCCACATATATCT-ATTCTGATGGCTCTGCCACA-ATATCTGT
1 CTGGTGGCTCTGCCACAAATATCTGA-TCTGGTGGCTCTGCCACATATATCTGT
80532040 ATCTGGTGAC
Statistics
Matches: 127, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
80 9 0.07
81 37 0.29
82 3 0.02
83 78 0.61
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.33
Consensus pattern (81 bp):
CTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
GCCACAATTATCTGAT
Found at i:80534168 original size:195 final size:193
Alignment explanation
Indices: 80533928--80534292 Score: 491
Period size: 195 Copynumber: 1.9 Consensus size: 193
80533918 GTTACACGTA
* * * *
80533928 TTTGTGAAAACCGATTGTATAATTGGTTTGATTTCTACGGTTCAAATACAAACCATATTCTCCAT
1 TTTGTGAAAACCGATCGTATAATTGATTTGATTTCTACGGTTCAAATACAAACCACAGTCTCCAT
*
80533993 TTATTCTTATGCAGCTCTTAATATTACACGTGTTTTGTAAATATTG-ATATTATAATTTGTTTAA
66 TTATTCTTA-GCAGCTCTTAATATTACACGTGTTTTG-AAATA-TGAATATTATAATTTATTTAA
* *
80534057 TTTATGGGATTTAAATATAAATTATCGCAGTCATTTAATCATATGTTGTTCTCAATATTATAGGT
128 TTTATGGGATTCAAATAAAAATTATCGCAGTCATTTAATCATATGTTGTTCTCAATATTATAGGT
80534122 G
193 G
* * * * * *
80534123 TTTGTGAAGACCGATCGTATAATTGATTTGATTTTTA-GAGTTCAAATGCAAGCCACCGTCTTCA
1 TTTGTGAAAACCGATCGTATAATTGATTTGATTTCTACG-GTTCAAATACAAACCACAGTCTCCA
* * * *
80534187 TTTATTTTTAGCAGTTCTTAATATTACACGTGTTTTGAGATATGAATATTATAATTTATTTATTT
65 TTTATTCTTAGCAGCTCTTAATATTACACGTGTTTTGAAATATGAATATTATAATTTATTTAATT
** * *
80534252 TATGGGATTCAAATAAAAATTATTTCCGTCATTTATTCATA
130 TATGGGATTCAAATAAAAATTATCGCAGTCATTTAATCATA
80534293 CATAGTACTT
Statistics
Matches: 147, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
192 2 0.01
193 57 0.39
194 27 0.18
195 61 0.41
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (193 bp):
TTTGTGAAAACCGATCGTATAATTGATTTGATTTCTACGGTTCAAATACAAACCACAGTCTCCAT
TTATTCTTAGCAGCTCTTAATATTACACGTGTTTTGAAATATGAATATTATAATTTATTTAATTT
ATGGGATTCAAATAAAAATTATCGCAGTCATTTAATCATATGTTGTTCTCAATATTATAGGTG
Found at i:80534704 original size:3 final size:3
Alignment explanation
Indices: 80534696--80534745 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
80534686 TGTTAAATGG
*
80534696 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80534744 TT
1 TT
80534746 TATGCTTGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:80536991 original size:19 final size:19
Alignment explanation
Indices: 80536967--80537081 Score: 166
Period size: 19 Copynumber: 6.2 Consensus size: 19
80536957 AATCTTTAAG
80536967 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80536986 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
80537005 GATA--CAGTCTTAGTTAT
1 GATATGCAATCTTAGATAT
80537022 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80537039 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80537058 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80537079 GAT
1 GAT
80537082 CTTATAATCT
Statistics
Matches: 88, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
17 30 0.34
19 49 0.56
21 9 0.10
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80543856 original size:17 final size:18
Alignment explanation
Indices: 80543830--80543869 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
80543820 CTTCTATTTA
80543830 AAAAAAAAGA-AAAAAAG
1 AAAAAAAAGAGAAAAAAG
* *
80543847 AAAAACAAGAGAAAAAAT
1 AAAAAAAAGAGAAAAAAG
80543865 AAAAA
1 AAAAA
80543870 GAAAAATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03
Consensus pattern (18 bp):
AAAAAAAAGAGAAAAAAG
Found at i:80543869 original size:19 final size:17
Alignment explanation
Indices: 80543828--80543874 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
80543818 GACTTCTATT
80543828 TAAAAAAAAAGAAAAAA
1 TAAAAAAAAAGAAAAAA
80543845 -AGAAAAACAAGAGAAAAAA
1 TA-AAAAA-AA-AGAAAAAA
80543864 TAAAAAGAAAA
1 TAAAAA-AAAA
80543875 ATGAGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
16 1 0.04
17 5 0.20
18 3 0.12
19 14 0.56
20 2 0.08
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (17 bp):
TAAAAAAAAAGAAAAAA
Found at i:80544933 original size:44 final size:44
Alignment explanation
Indices: 80544734--80545227 Score: 355
Period size: 44 Copynumber: 11.2 Consensus size: 44
80544724 CAAAGAAACA
* *
80544734 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * * * ** **
80544778 AG-TTCTGACA-CTCTTGTGCTTACAGCAAAGC-AGATTGAAGATTTC
1 AGATT-TGGCATC-CCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGC
**
80544823 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATCTC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
*
80544866 AGCA--TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * *
80544909 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * * * * * * * * **
80544953 AAATCTGACATTCCTGTGCTTACAGCGAA-ACAGATCGAACATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AG-TTGAAGATAGC
*
80544998 AGCA--TGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* **
80545041 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * * * * ** **
80545085 AGATCTGACATTCCTGTGCTTATAGCGAAGTAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
*
80545130 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGT
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * * * * *
80545173 AGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG--ATAGC
*
80545219 TGATTTGGC
1 AGATTTGGC
80545228 TTTCACGGTT
Statistics
Matches: 348, Mismatches: 80, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.01
43 76 0.22
44 224 0.64
45 31 0.09
46 14 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
Found at i:80545025 original size:175 final size:175
Alignment explanation
Indices: 80544734--80545109 Score: 531
Period size: 175 Copynumber: 2.1 Consensus size: 175
80544724 CAAAGAAACA
* * * ** *
80544734 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGTTCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGAAAATCTGACACTCCTGTGCTT
* * *
80544799 ACAGCAAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATC
66 ACAGCAAAGCAGATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
* * **
80544864 TCAGCA-TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGC
131 GCAG-ATTGGCATCCCTGTGCTTATAGGGAACAAATCAAAGATAGC
*
80544909 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGAAAATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGAAAATCTGACACTCCTGTGCTT
*
80544974 ACAGCGAAA-CAGATCGAACATTTCAGCATGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGAT
66 ACAGC-AAAGCAGATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
80545038 AGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGC
130 AGCAGA-TTGGCATCCCTGTGCTTATAGGGAACAAATCAAAGATAGC
* * * *
80545085 AGATCTGACATTCCTGTGCTTATAG
1 AGATTTGGCATCCCTGTGTTTATAG
80545110 CGAAGTAGAT
Statistics
Matches: 178, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
174 1 0.01
175 118 0.66
176 59 0.33
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (175 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGAAAATCTGACACTCCTGTGCTT
ACAGCAAAGCAGATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GCAGATTGGCATCCCTGTGCTTATAGGGAACAAATCAAAGATAGC
Found at i:80545027 original size:132 final size:132
Alignment explanation
Indices: 80544864--80545212 Score: 563
Period size: 132 Copynumber: 2.6 Consensus size: 132
80544854 GTTGAAGATC
*
80544864 TCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
1 TCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
80544929 TATAGGGAACAAATCGAAGATAGAAAATCTGACATTCCTGTGCTTACAGCGAAACAGATCGAACA
66 TATAGGGAACAAATCGAAGATAGAAAATCTGACATTCCTGTGCTTACAGCGAAACAGATCGAACA
80544994 TT
131 TT
*
80544996 TCAGCATGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
1 TCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
* * * * ** * *
80545061 TATAGGGAACAAATCAAAGATAGCAGATCTGACATTCCTGTGCTTATAGCGAAGTAGATTGAAGA
66 TATAGGGAACAAATCGAAGATAGAAAATCTGACATTCCTGTGCTTACAGCGAAACAGATCGAACA
80545126 TT
131 TT
* * *
80545128 TCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCTTGTGCT
1 TCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
* *
80545193 TACAAGGAACAAATCGAAGA
66 TATAGGGAACAAATCGAAGA
80545213 CATAGCTGAT
Statistics
Matches: 200, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 200 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
TCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT
TATAGGGAACAAATCGAAGATAGAAAATCTGACATTCCTGTGCTTACAGCGAAACAGATCGAACA
TT
Found at i:80545538 original size:206 final size:206
Alignment explanation
Indices: 80545174--80545915 Score: 1069
Period size: 206 Copynumber: 3.6 Consensus size: 206
80545164 GAAGATAGTA
* *
80545174 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
80545238 TACGCTGAAGGAAATCTAAAATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * *
80545303 CATCTCCATATTCGACGGAGAGTAGACACATAGCAGATCTGGCCTTCATATATTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGACCTTCAGATATTTATACTGAAGC
*
80545368 AGATCCAAGGT
196 AGATCCAAGAT
*
80545379 GATTAGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCT
*
80545444 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
80545509 CGTCTCCATATTTGACGGAGAGCAGACACATAGCAGATCTGACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGACCTTCAGATATTTATACTGAAGC
80545574 AGATCCAAGAT
196 AGATCCAAGAT
* * *
80545585 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAA-TCATATCTGATTTGGCTTTCACGTGC
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATC-AAAGACATAGCTGATTTGGCTTTCACGTGC
* * *
80545649 TTATGATGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTG
65 TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
* * * * * *
80545714 GCGTCTCCATAATCGATGGAGGGCAGACACATAGCAGATCTAACCTTTAGATGA-TTAGACTGAA
130 GCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGACCTTCAGAT-ATTTATACTGAA
*
80545778 GTAGATCCAAGAT
194 GCAGATCCAAGAT
* * * * ** * * * *
80545791 -AGTTTGGTATCATTATGCTTACAAGGAGCAAATTGAATACATAGTTGATTTGGTTTTCGCGTGC
1 GA-TTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGC
* * *
80545855 TTACGATGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTCAGAAAACAGATCGAAG
65 TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
80545916 ATAACAGATT
Statistics
Matches: 483, Mismatches: 49, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
205 62 0.13
206 418 0.87
207 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGACCTTCAGATATTTATACTGAAGC
AGATCCAAGAT
Found at i:80546328 original size:19 final size:19
Alignment explanation
Indices: 80546304--80546401 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
80546294 AATCTTTAAG
80546304 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80546323 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80546342 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80546359 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80546378 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80546399 GAT
1 GAT
80546402 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80546334 original size:36 final size:35
Alignment explanation
Indices: 80546294--80546401 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
80546284 ATGGAAATAT
80546294 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
80546330 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
80546366 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
80546402 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:80548876 original size:39 final size:40
Alignment explanation
Indices: 80548822--80549076 Score: 378
Period size: 39 Copynumber: 6.5 Consensus size: 40
80548812 AAACCAAGTA
* * * *
80548822 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80548861 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80548901 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80548940 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80548980 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
80549019 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80549058 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80549077 TTATCATCCG
Statistics
Matches: 200, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
38 9 0.05
39 106 0.53
40 85 0.43
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80548967 original size:79 final size:80
Alignment explanation
Indices: 80548822--80549076 Score: 387
Period size: 79 Copynumber: 3.2 Consensus size: 80
80548812 AAACCAAGTA
* * * *
80548822 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
80548885 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
80548901 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
80548965 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
80548980 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
80549042 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
80549058 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80549077 TTATCATCCG
Statistics
Matches: 164, Mismatches: 7, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
77 1 0.01
78 51 0.31
79 100 0.61
80 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:80549031 original size:118 final size:119
Alignment explanation
Indices: 80548855--80549080 Score: 386
Period size: 118 Copynumber: 1.9 Consensus size: 119
80548845 GCTACTTGCT
*
80548855 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGA
*
80548919 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66 AT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
80548974 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT-GGGACTTAGCCCGG
*
80549037 AATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
65 AATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
80549081 CATCCGAATA
Statistics
Matches: 102, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
118 74 0.73
119 28 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGA
ATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80557052 original size:40 final size:40
Alignment explanation
Indices: 80556963--80557109 Score: 210
Period size: 39 Copynumber: 3.7 Consensus size: 40
80556953 GCTACTTGTT
* *
80556963 CAAATGCCTTTGGGACTTAGCCCAGTTATAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
80557002 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
80557042 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
80557081 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
80557110 CATCCGAATA
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
38 2 0.02
39 64 0.67
40 28 0.29
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80563731 original size:45 final size:45
Alignment explanation
Indices: 80563667--80563757 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
80563657 TGCTTTGAAA
80563667 TATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCTAAGT
1 TATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCTAAGT
80563712 TATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCTAAGT
1 TATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCTAAGT
80563757 T
1 T
80563758 TAAGGGATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (45 bp):
TATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCTAAGT
Found at i:80565887 original size:2 final size:2
Alignment explanation
Indices: 80565880--80565904 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80565870 AGAACTTTAG
80565880 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80565905 TTTCTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80567551 original size:39 final size:39
Alignment explanation
Indices: 80567507--80567634 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
80567497 TATGAGATTG
80567507 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
80567546 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
80567585 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
80567624 AAAATATCCGG
1 AAAATATCCGG
80567635 GTTAAAGACC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:80567648 original size:78 final size:76
Alignment explanation
Indices: 80567506--80567660 Score: 213
Period size: 78 Copynumber: 2.0 Consensus size: 76
80567496 GTATGAGATT
* * *
80567506 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
80567571 GGCTATATGCTA
66 GGCT-TATGCTA
* * **
80567583 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
80567647 CAGGCTTATGCTA
64 CAGGCTTATGCTA
80567660 G
1 G
80567661 TAATGTATTC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
77 13 0.19
78 56 0.81
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
GGCTTATGCTA
Found at i:80570100 original size:46 final size:46
Alignment explanation
Indices: 80569997--80570123 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
80569987 GGACTATTGT
* * *
80569997 GAGCTAGTGTAAGACCATGTCCGGGACATGGCATCAGCAGTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACTGAGATGA
* * *
80570045 GAGCTAGTGTAAGACACGTCTAGGACATGCATCAGC-CTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACT-GAGATG-A
80570092 -AGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
80570124 GGCTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
45 1 0.01
46 43 0.61
47 12 0.17
48 14 0.20
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.20
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACTGAGATGA
Found at i:80571193 original size:41 final size:41
Alignment explanation
Indices: 80571136--80571230 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
80571126 CAAGGGCTAA
* *
80571136 GACACGGGCGTGTCATGGCCGTGTTAAGGACACTGGCCAGG
1 GACACGGGCGTGTCATGGCAGTGTGAAGGACACTGGCCAGG
*
80571177 GACACGGGCGTGTCATGGCAGTGTGAAGGGCACTGGCCAGG
1 GACACGGGCGTGTCATGGCAGTGTGAAGGACACTGGCCAGG
80571218 GACACGGGCGTGT
1 GACACGGGCGTGT
80571231 GCCAAGCCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.16
Consensus pattern (41 bp):
GACACGGGCGTGTCATGGCAGTGTGAAGGACACTGGCCAGG
Found at i:80575083 original size:48 final size:48
Alignment explanation
Indices: 80575028--80575154 Score: 164
Period size: 48 Copynumber: 2.6 Consensus size: 48
80575018 CTGGGCTATC
* **
80575028 GGCATCGATATGCGATCCCATGTAAGACTATGTTTGGGACATGGCATT
1 GGCATCGATATGCGATCCCATGTAAGACCATGCCTGGGACATGGCATT
** *
80575076 GGCATCGACCTACGATCCCATGTAAGACCATGCCTGGGACATGGCATT
1 GGCATCGATATGCGATCCCATGTAAGACCATGCCTGGGACATGGCATT
* * * *
80575124 GGCATCGATACGTGATCCCAAGTAATACCAT
1 GGCATCGATATGCGATCCCATGTAAGACCAT
80575155 ATTCGAGATA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (48 bp):
GGCATCGATATGCGATCCCATGTAAGACCATGCCTGGGACATGGCATT
Found at i:80582049 original size:68 final size:70
Alignment explanation
Indices: 80581977--80582174 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
80581967 ACACCCTGTA
* * * *
80581977 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
80582039 ATAAAT
65 ATAAAT
*
80582045 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
*
80582110 GTAAAT
65 ATAAAT
*
80582116 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
80582175 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:80582100 original size:71 final size:71
Alignment explanation
Indices: 80582011--80582174 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
80582001 GAGATGTATC
80582011 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80582076 AGGACA
66 AGGACA
*
80582082 CCATGTAGACAAGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80582147 AGGACA
66 AGGACA
80582153 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80582175 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80584265 original size:48 final size:48
Alignment explanation
Indices: 80584077--80584295 Score: 182
Period size: 48 Copynumber: 4.7 Consensus size: 48
80584067 CAATCTTATA
* * * * ** * *
80584077 TAAGACCATGTCTGTGACATGGCTTTGGCATCTATATGTTATTTCGTA
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
80584125 TAAGACCATAGT-TGGG-CTAT--CA---GCATCGATATGTGATCCCATG
1 TAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCGATATGTGATCCCATG
* * ** ***
80584168 TAAGACCATGTCTGGGGCATGGCATTGGCCTCGACCTACAATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
* *
80584216 TAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTGATCCAATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
* * * *
80584264 TAAGACCATATCCGGGATATGGCATTGACATC
1 TAAGACCATGTCTGGGACATGGCATTGGCATC
80584296 CTACCATGTG
Statistics
Matches: 134, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.01
43 30 0.22
44 1 0.01
45 2 0.01
46 1 0.01
47 1 0.01
48 95 0.71
49 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
Found at i:80595183 original size:25 final size:25
Alignment explanation
Indices: 80595141--80595193 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80595131 TAAGCTCATG
* *
80595141 CGAGCTAAATGCCGGTAAACTCTCT
1 CGAGCTAAATACCAGTAAACTCTCT
* *
80595166 CGAGCTAAATATCAGTAAGCTCTCT
1 CGAGCTAAATACCAGTAAACTCTCT
80595191 CGA
1 CGA
80595194 CCTGAGAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (25 bp):
CGAGCTAAATACCAGTAAACTCTCT
Found at i:80596087 original size:5 final size:5
Alignment explanation
Indices: 80596077--80596114 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
80596067 TAACTTTTCC
80596077 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
80596115 ATCAAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:80613461 original size:30 final size:32
Alignment explanation
Indices: 80613391--80613481 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 32
80613381 AAATTTTATA
* * * *
80613391 CTTTTAAAGTTTTTAAAATATTTTAAATATACT
1 CTTTTAAAATTTTTGAAA-ATTTTAATTAAACT
80613424 CTTTT-AAA-TTTTGAAAATTTTAATTAAACT
1 CTTTTAAAATTTTTGAAAATTTTAATTAAACT
80613454 -TTCTTAAAATTTTTTGAAAATTCTTAAT
1 CTT-TTAAAA-TTTTTGAAAATT-TTAAT
80613482 AATCTCATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 2 0.04
30 14 0.29
31 10 0.20
32 2 0.04
33 16 0.33
34 5 0.10
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (32 bp):
CTTTTAAAATTTTTGAAAATTTTAATTAAACT
Found at i:80614566 original size:2 final size:2
Alignment explanation
Indices: 80614559--80614592 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
80614549 AAAAGGAAAC
80614559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80614593 GCATATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80615198 original size:30 final size:30
Alignment explanation
Indices: 80615162--80615221 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80615152 CATTTTATTA
*
80615162 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGAAATTTG
*
80615192 TTAATTTTGTTATTATTTTAGAGAAATTTG
1 TTAATTTTGTTATTATTTTAAAGAAATTTG
80615222 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGAAATTTG
Found at i:80615325 original size:18 final size:20
Alignment explanation
Indices: 80615304--80615344 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
80615294 GAAATATTTA
*
80615304 TTTTGATGT-TTTTA-ATAT
1 TTTTGATGTATTATATATAT
80615322 TTTTGATGTATTATATATAT
1 TTTTGATGTATTATATATAT
80615342 TTT
1 TTT
80615345 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTATATATAT
Found at i:80618979 original size:15 final size:15
Alignment explanation
Indices: 80618961--80618990 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80618951 AATATTAATA
80618961 AATAAATTATGAGAG
1 AATAAATTATGAGAG
80618976 AATAAATTATGAGAG
1 AATAAATTATGAGAG
80618991 GATGAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.20, T:0.27
Consensus pattern (15 bp):
AATAAATTATGAGAG
Found at i:80627846 original size:40 final size:40
Alignment explanation
Indices: 80627800--80627984 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
80627790 GTCGCACAAG
** * *
80627800 GCCTTCGGGTCTTAGCCTAGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
80627840 GCCTTCGGGACTTAGCCCGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
80627880 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
80627920 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
* *
80627961 GCCTTCGGGACTTAGCCCGAATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80627985 CATTCGAATA
Statistics
Matches: 120, Mismatches: 24, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
40 92 0.77
41 28 0.23
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:80631448 original size:48 final size:49
Alignment explanation
Indices: 80631393--80631525 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 49
80631383 CTCAATCGAT
*
80631393 AAGTACCTATACCAT-GCTCCGAAGCCAAATCAAGGTAACTTATC-CCCA
1 AAGTACCTATACCATGGC-CCGAAGCCAAATCAAGGTAACTCATCTCCCA
* *
80631441 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCGA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCCA
* * ** *
80631490 AA-TACCTATACAATAGCCTAAAGCAAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
80631526 TAATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 67 0.91
49 7 0.09
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.20
Consensus pattern (49 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCCA
Found at i:80631649 original size:11 final size:11
Alignment explanation
Indices: 80631633--80631662 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
80631623 GATTTCATGC
80631633 TTGTCGAATCA
1 TTGTCGAATCA
80631644 TTGTCGAATCA
1 TTGTCGAATCA
*
80631655 TTCTCGAA
1 TTGTCGAA
80631663 CTTGTCCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (11 bp):
TTGTCGAATCA
Found at i:80636835 original size:49 final size:48
Alignment explanation
Indices: 80636771--80636992 Score: 229
Period size: 46 Copynumber: 4.7 Consensus size: 48
80636761 ACATCAAAGT
* *
80636771 CGATGTCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTTCATATATCGAGGC
* * * * *
80636820 CGATGCCGTGTCCCAGACAGGTCATACACTAGCTTGT-ATATCTTGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-TCATATATCGAGGC
* * * * * *
80636869 TGATGCATGTCCTAGACATGTCTTACACTAGCTCTC--ATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATATATCGAGGC
* * *
80636915 CGATGCATGTCCCAGACATGTCTTACACTGGCTTCCATA-AT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATATATCGAGGC
*
80636961 CAATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
80636993 ACACATATCA
Statistics
Matches: 143, Mismatches: 26, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
46 70 0.49
47 2 0.01
48 25 0.17
49 45 0.31
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATATATCGAGGC
Found at i:80636932 original size:46 final size:46
Alignment explanation
Indices: 80636719--80636992 Score: 166
Period size: 46 Copynumber: 5.8 Consensus size: 46
80636709 ATGGGATAAG
* * * *
80636719 ATGCCGACGCCATGTCCCAGACATGGTATTACATTAGCTAACA-CATCA
1 ATGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TCATC-TCA
* * * * * * *
80636767 AAGTCGATGTCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCG
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTAGC-TTC--ATCTCA
* * * * * **
80636816 AGGCCGATGCCGTGTCCCAGACAGGTCATACACTAGCTTGTATATCTTG
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTAGC-T-T-CATCTCA
* * *
80636865 AGGCTGATG-CATGTCCTAGACATGTCTTACACTAGCTCTCATCTCA
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCT-TCATCTCA
*
80636911 ATGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTTC--CAT-A
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATC-TCA
*
80636954 ATGTGGCCAATG-CATGTCCCAGACATGTCTTACACTAGC
1 A--T-GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
80636993 ACACATATCA
Statistics
Matches: 181, Mismatches: 35, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
43 3 0.02
44 1 0.01
45 3 0.02
46 69 0.38
47 13 0.07
48 43 0.24
49 48 0.27
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATCTCA
Found at i:80648347 original size:37 final size:37
Alignment explanation
Indices: 80648297--80648367 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
80648287 GCTCAGACGA
*
80648297 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGAGTCTTACCCGGACAT
80648334 AATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGAGTCTTACCCGGA
80648368 ATACATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGAGTCTTACCCGGACAT
Found at i:80648483 original size:48 final size:48
Alignment explanation
Indices: 80648412--80649083 Score: 773
Period size: 48 Copynumber: 14.0 Consensus size: 48
80648402 TGTTACAACA
* ***
80648412 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
80648460 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
80648508 TTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648556 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
80648604 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648652 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648700 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACAC----A--T---ATA--T
*
80648759 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648807 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CACAT-TA-
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * * * * * *
80648851 -GC-CATTCGGCTTTAC--C---A-CATATACATATCTCACATAT--AT
1 TTCACATTAGCCATT-CGGCTTTACCACATATACATATCACACATATAT
*** ** ** ** ** * * * * *
80648890 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATAT--AT
1 TTCACA-TTAGCCATTCGGCTTTAC-CACATATACATATCACACATATAT
80648938 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
80649034 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80649082 TT
1 TT
80649084 ATCTTGTACA
Statistics
Matches: 543, Mismatches: 54, Indels: 54
0.83 0.08 0.08
Matches are distributed among these distances:
37 9 0.02
38 2 0.00
39 4 0.01
40 1 0.00
41 3 0.01
42 11 0.02
43 2 0.00
45 1 0.00
46 20 0.04
47 7 0.01
48 431 0.79
50 2 0.00
52 1 0.00
53 1 0.00
54 1 0.00
55 1 0.00
57 3 0.01
59 43 0.08
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:80648518 original size:96 final size:96
Alignment explanation
Indices: 80648412--80649083 Score: 1055
Period size: 96 Copynumber: 7.0 Consensus size: 96
80648402 TGTTACAACA
** *
80648412 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
80648477 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
*
80648508 TTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
80648573 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
80648604 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
80648669 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
*
80648700 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATATTTTTCACA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTC--ATA--T---ATA--TTTCACA
*
80648765 TTAGCCATTCGGCTTTACCACATATACATATCACACATATTT
55 TTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80648807 TTCACATTAGCCATTCGGCTTTACCAC--AT--ATA---C----ATA--TCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
*
80648859 GCTTTACCACATATACATATCTCACATATAT
66 GCTTTACCACATATACATATCACACATATAT
*
80648890 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
80648955 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
* *
80648986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
*
80649051 GCTTTACCACATACACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
80649082 TT
1 TT
80649084 ATCTTGTACA
Statistics
Matches: 540, Mismatches: 12, Indels: 48
0.90 0.02 0.08
Matches are distributed among these distances:
83 72 0.13
85 2 0.00
87 6 0.01
90 1 0.00
94 3 0.01
96 366 0.68
98 3 0.01
100 3 0.01
102 1 0.00
103 3 0.01
105 5 0.01
107 75 0.14
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:80648604 original size:144 final size:144
Alignment explanation
Indices: 80648412--80649083 Score: 1028
Period size: 144 Copynumber: 4.7 Consensus size: 144
80648402 TGTTACAACA
* *** *
80648412 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
80648477 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTGCCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
* *
80648542 TATCTCATATATAT
131 TATCACACATATAT
80648556 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
80648621 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
80648686 TATCACACATATAT
131 TATCACACATATAT
80648700 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATATTTTTCACA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACAC----A--T---ATA--TTTCACA
*
80648765 TTAGCCATTCGGCTTTACCACATATACATATCACACATATTTTTCACATTAGCCATTCGGCTTTA
55 TTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTA
80648830 -C-C----ACATAT---AC--ATA-
120 CCACATATACATATCACACATATAT
*
80648843 -TCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
80648907 GCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
80648972 TATCACACATATAT
131 TATCACACATATAT
80648986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
80649051 GCTTTACCACATACACATATCACACATATATTT
66 GCTTTACCACATATACATATCACACATATATTT
80649084 ATCTTGTACA
Statistics
Matches: 485, Mismatches: 19, Indels: 48
0.88 0.03 0.09
Matches are distributed among these distances:
131 70 0.14
132 1 0.00
133 4 0.01
136 1 0.00
137 6 0.01
138 1 0.00
140 2 0.00
142 43 0.09
144 273 0.56
146 2 0.00
148 1 0.00
149 6 0.01
150 1 0.00
153 4 0.01
154 1 0.00
155 69 0.14
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCACACATATAT
Found at i:80648849 original size:35 final size:35
Alignment explanation
Indices: 80648808--80648879 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
80648798 CACATATTTT
80648808 TCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATA
80648843 TCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATA
80648878 TC
1 TC
80648880 TCACATATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (35 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:80648854 original size:83 final size:83
Alignment explanation
Indices: 80648760--80649026 Score: 399
Period size: 83 Copynumber: 3.1 Consensus size: 83
80648750 CACATATTTT
*
80648760 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATTTTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
80648825 CTTTACCACATATACATA
66 CTTTACCACATATACATA
*
80648843 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
80648908 CTTTACCACATATACATA
66 CTTTACCACATATACATA
80648926 TCTCACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCAC
1 --TCAC----A-TT---A---GCCATTCGGCTTTACCACATATACATATCACACATATATTTCAC
80648991 ATTAGCCATTCGGCTTTACCACATATACATA
53 ATTAGCCATTCGGCTTTACCACATATACATA
80649022 TCACA
1 TCACA
80649027 CATATATTTC
Statistics
Matches: 168, Mismatches: 3, Indels: 19
0.88 0.02 0.10
Matches are distributed among these distances:
83 81 0.48
85 4 0.02
89 1 0.01
90 3 0.02
93 1 0.01
94 4 0.02
96 74 0.44
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (83 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
CTTTACCACATATACATA
Found at i:80648935 original size:238 final size:227
Alignment explanation
Indices: 80648412--80649074 Score: 1002
Period size: 238 Copynumber: 2.8 Consensus size: 227
80648402 TGTTACAACA
* *** *
80648412 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
80648477 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTGCCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
* *
80648542 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTC
131 TATCACACATATATTTCACATTAGCCATTCGGCTTTA-C-C----AC--AT-ACAC--ATA--TC
*
80648607 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
183 ACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
80648652 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
80648717 GCTTTACCACATATACATATCACACATATATTTCACATATTTTTCACATTAGCCATTCGGCTTTA
66 GCTTTACCACATATACATATCACAC----A--T---ATA--TTTCACATTAGCCATTCGGCTTTA
* *
80648782 CCACATATACATATCACACATATTTTTCACATTAGCCATTCGGCTTTACCACATATACATATCAC
120 CCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCAC
80648847 ATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
185 ATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
80648890 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
80648955 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
80649020 TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCACA
131 TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCACA
80649075 CATATATTTA
Statistics
Matches: 398, Mismatches: 14, Indels: 35
0.89 0.03 0.08
Matches are distributed among these distances:
227 88 0.22
229 3 0.01
232 1 0.00
234 1 0.00
238 135 0.34
240 88 0.22
242 3 0.01
243 2 0.01
244 1 0.00
245 2 0.01
246 1 0.00
249 4 0.01
250 1 0.00
251 68 0.17
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (227 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCACATTAGCCATTC
GGCTTTACCACATATACATATCTCACATATAT
Found at i:80653944 original size:46 final size:46
Alignment explanation
Indices: 80653885--80654003 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 46
80653875 GAGGTCGTTA
* * *
80653885 CATGTTCCAGACATGTCTTACACTAGCTCTCGTCTATAT-GACAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-AATATGGACAATG
* * * *
80653931 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGACAATG
*
80653977 CATGTCCCAGACATATCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
80654004 ACACATATCA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 3 0.05
46 60 0.95
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGACAATG
Found at i:80660834 original size:45 final size:45
Alignment explanation
Indices: 80660784--80660870 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
80660774 CCAAAACATG
80660784 TGTCACATATATCACGAACTCAGACCACAACACAATGAGTTCGAA
1 TGTCACATATATCACGAACTCAGACCACAACACAATGAGTTCGAA
* *
80660829 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTC
1 TGTCACATATATCACGAACTCAGACCACAACACAATGAGTTC
80660871 AAATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACACAATGAGTTCGAA
Found at i:80669652 original size:27 final size:27
Alignment explanation
Indices: 80669622--80669718 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
80669612 CACATAAGTA
*
80669622 CAAAACAGTCATTTTACCTCATGAGGG
1 CAAAACAATCATTTTACCTCATGAGGG
* *
80669649 CAAAATAGTCATTTTACCTCATGAGGG
1 CAAAACAATCATTTTACCTCATGAGGG
* *
80669676 CAAAACAATCAATTTACCTCATTAGGG
1 CAAAACAATCATTTTACCTCATGAGGG
80669703 CAAAACAATCATTTTA
1 CAAAACAATCATTTTA
80669719 TCGATTAAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (27 bp):
CAAAACAATCATTTTACCTCATGAGGG
Found at i:80671855 original size:48 final size:48
Alignment explanation
Indices: 80671798--80671927 Score: 170
Period size: 48 Copynumber: 2.7 Consensus size: 48
80671788 AATAAATAAG
* * * *
80671798 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCGGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATACCCGAAA
* * ** *
80671846 TGCCTATACCATGGCCTGTGGCCAAATCAAGGTAACTCATATCCGAAA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATACCCGAAA
*
80671894 TACCTATACCATGGCCCAAAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTA
80671928 TAATTTGCAC
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (48 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATACCCGAAA
Found at i:80673340 original size:26 final size:26
Alignment explanation
Indices: 80673278--80673341 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 26
80673268 TTCAACTGTC
** * *
80673278 ACACGCCCATGTGAATAGGCCGTATG
1 ACACGCCCGCGTGAACAGGCCGTATA
*
80673304 ACACGCCCGCGTGAACAGGCCGTGTA
1 ACACGCCCGCGTGAACAGGCCGTATA
* *
80673330 ACATGCTCGCGT
1 ACACGCCCGCGT
80673342 CTTAGACCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (26 bp):
ACACGCCCGCGTGAACAGGCCGTATA
Found at i:80674555 original size:23 final size:23
Alignment explanation
Indices: 80674525--80674613 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
80674515 CTGATGGACA
80674525 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACG
* * *
80674548 GTAAGCTCTATCGAGTTG-AACA
1 GTAAGCTCTATTGAGCTGAAACG
* *
80674570 GTAAGCTCGTA-TGAGCTAAAATG
1 GTAAGCTC-TATTGAGCTGAAACG
* *
80674593 GTAGGCTCTAATGAGCTGAAA
1 GTAAGCTCTATTGAGCTGAAA
80674614 ATAATAAGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
22 17 0.32
23 36 0.68
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACG
Found at i:80674576 original size:22 final size:23
Alignment explanation
Indices: 80674522--80674635 Score: 83
Period size: 23 Copynumber: 5.0 Consensus size: 23
80674512 GAGCTGATGG
*
80674522 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTATCGAGCTGAA
* *
80674545 ACGGTAAGCTCTATCGAGTTG-A
1 ACAGTAAGCTCTATCGAGCTGAA
*
80674567 ACAGTAAGCTCGTAT-GAGCTAAA
1 ACAGTAAGCTC-TATCGAGCTGAA
** *
80674590 ATGGTAGGCTCTAAT-GAGCTGAAA
1 ACAGTAAGCTCT-ATCGAGCTG-AA
* *
80674614 ATAATAAGCTCT-TACGAGCTGA
1 ACAGTAAGCTCTAT-CGAGCTGA
80674636 TATATCGGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
22 17 0.24
23 38 0.53
24 17 0.24
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTATCGAGCTGAA
Found at i:80674624 original size:24 final size:23
Alignment explanation
Indices: 80674571--80674635 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
80674561 AGTTGAACAG
**
80674571 TAAGCTCGTATGAGCT-AAAATGG
1 TAAGCTC-TATGAGCTGAAAATAA
*
80674594 TAGGCTCTAATGAGCTGAAAATAA
1 TAAGCTCT-ATGAGCTGAAAATAA
*
80674618 TAAGCTCTTACGAGCTGA
1 TAAGCTC-TATGAGCTGA
80674636 TATATCGGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 1 0.03
23 13 0.38
24 19 0.56
25 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (23 bp):
TAAGCTCTATGAGCTGAAAATAA
Found at i:80684291 original size:43 final size:42
Alignment explanation
Indices: 80684230--80684346 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 42
80684220 CACATGTATT
* * *
80684230 GCATCCATTATGAACTCGGACCACTGAACGAGGTCAGATGCTC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGC-C
*
80684273 GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCC
* ** * *
80684315 ACATATATCATGAACTTGGACCACTCAACGAG
1 GCATCCATAATGAACTCGGACCACTCAACGAG
80684347 TTTGGACTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 28 0.43
43 37 0.57
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.20
Consensus pattern (42 bp):
GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCC
Found at i:80687370 original size:160 final size:161
Alignment explanation
Indices: 80687097--80687416 Score: 475
Period size: 160 Copynumber: 2.0 Consensus size: 161
80687087 TGATGACCGA
* * *
80687097 AATACCCCCATAGGGTAAGATGACCGAAATATCCTCATAGGGTAAGATGACCGAAATACCCTCAT
1 AATACCCCCACAGGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCGAAATACCCTCAT
* * *
80687162 AGGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGATCGAAATA-CCCCATAGGGTAAAATG
66 AAGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCAAAATACCCCCATAGGGTAAAATG
* *
80687226 A-TCAAAATACCCCTATAAGGTCAAATGACTG
131 ACT-AAAATACCCATATAAGGTAAAATGACTG
*
80687257 AATACCCCCACAGGGTAATATGACCGAAATACCCCCATAGGGTAAGATGACCGAAATACCC-CAA
1 AATACCCCCACAGGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCGAAATACCCTC-A
* * *
80687321 TAAGGTAAGGTGACTGAAATACCCCCATAGGGTAAGATGACCAAAATACCCCCATAGGGTAAGAT
65 TAAGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCAAAATACCCCCATAGGGTAAAAT
* *
80687386 GACTGAAATACCCATATAGGGTAAAATGACT
130 GACTAAAATACCCATATAAGGTAAAATGACT
80687417 ATTTTTCCCT
Statistics
Matches: 143, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
159 1 0.01
160 101 0.71
161 40 0.28
162 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (161 bp):
AATACCCCCACAGGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCGAAATACCCTCAT
AAGGTAAGATGACCGAAATACCCCCATAGGGTAAGATGACCAAAATACCCCCATAGGGTAAAATG
ACTAAAATACCCATATAAGGTAAAATGACTG
Found at i:80687416 original size:27 final size:27
Alignment explanation
Indices: 80687088--80687415 Score: 437
Period size: 27 Copynumber: 12.2 Consensus size: 27
80687078 GGGCTGAAAT
80687088 GATGACCGAAATACCCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
* *
80687115 GATGACCGAAATATCCTCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
*
80687142 GATGACCGAAATACCCTCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
80687169 GATGACCGAAATACCCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
*
80687196 GATGATCGAAATA-CCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
* * * * *
80687222 AATGATCAAAATACCCCTATAAGGTCAA
1 GATGACCGAAATACCCCCATAGGGT-AA
* *
80687250 -ATGACTG-AATACCCCCACAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
*
80687275 TATGACCGAAATACCCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
* *
80687302 GATGACCGAAATACCCCAATAAGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
* *
80687329 GGTGACTGAAATACCCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
*
80687356 GATGACCAAAATACCCCCATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
* **
80687383 GATGACTGAAATACCCATATAGGGTAA
1 GATGACCGAAATACCCCCATAGGGTAA
*
80687410 AATGAC
1 GATGAC
80687416 TATTTTTCCC
Statistics
Matches: 265, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
25 2 0.01
26 43 0.16
27 218 0.82
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (27 bp):
GATGACCGAAATACCCCCATAGGGTAA
Found at i:80687437 original size:27 final size:27
Alignment explanation
Indices: 80687407--80687594 Score: 157
Period size: 27 Copynumber: 7.0 Consensus size: 27
80687397 CCATATAGGG
* *
80687407 TAAAATGACTATTTTTCCCTTACGTGA
1 TAAAATGACTATTTTGCCCTTATGTGA
** * *
80687434 TAAAATGACGGTTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGA
* * * * *
80687461 CAAAATGACTGTATTGCCCTTATTTGT
1 TAAAATGACTATTTTGCCCTTATGTGA
** * *
80687488 TAAAATGGTTGTTTTGCCCTTATATG-
1 TAAAATGACTATTTTGCCCTTATGTGA
** *
80687514 T-AAATGAAAATTTTGCCCTTATGTGT
1 TAAAATGACTATTTTGCCCTTATGTGA
*
80687540 TAAAATGA-TGATTTTACCCTTATGTGA
1 TAAAATGACT-ATTTTGCCCTTATGTGA
* *
80687567 TAAAATGACTATTTTACCCCTATGTGA
1 TAAAATGACTATTTTGCCCTTATGTGA
80687594 T
1 T
80687595 GTATGTTTAT
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
25 19 0.14
26 2 0.02
27 110 0.83
28 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGA
Found at i:80687467 original size:54 final size:53
Alignment explanation
Indices: 80687408--80687592 Score: 183
Period size: 54 Copynumber: 3.5 Consensus size: 53
80687398 CATATAGGGT
* * * *
80687408 AAAATGACTATTTTTCCCTTACGTGATAAAATGACGGTTTTGCCCTTATATGG
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGG
* * * * *
80687461 CAAAATGACTGTATTGCCCTTATTTGTTAAAATGGTTGTTTTGCCCTTATAT-G
1 -AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGG
* ** * * * *
80687514 TAAATGAAAATTTTGCCCTTATGTGTTAAAATGATGATTTTACCCTTATGTGAT
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATG-G
* *
80687568 AAAATGACTATTTTACCCCTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
80687593 ATGTATGTTT
Statistics
Matches: 103, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
52 40 0.39
53 1 0.01
54 62 0.60
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.41
Consensus pattern (53 bp):
AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGG
Found at i:80689486 original size:2 final size:2
Alignment explanation
Indices: 80689479--80689505 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80689469 TTAATCGCTA
80689479 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
80689506 CAGCATTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80696195 original size:20 final size:20
Alignment explanation
Indices: 80696170--80696210 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80696160 TTTATAACAT
80696170 AAATAAATAAAAAAGGAAAA
1 AAATAAATAAAAAAGGAAAA
80696190 AAATAAATAAAAAAGGAAAA
1 AAATAAATAAAAAAGGAAAA
80696210 A
1 A
80696211 GTAATTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (20 bp):
AAATAAATAAAAAAGGAAAA
Found at i:80696818 original size:40 final size:40
Alignment explanation
Indices: 80696722--80696905 Score: 221
Period size: 40 Copynumber: 4.5 Consensus size: 40
80696712 TATTCGGATG
80696722 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
80696765 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* **
80696805 ATATCCGGGCTAAGTCCCAAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* * *
80696845 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
* *
80696885 ATGTCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
80696906 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.12
40 77 0.62
41 2 0.02
43 31 0.25
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:80700143 original size:40 final size:40
Alignment explanation
Indices: 80700069--80700214 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
80700059 CCGCACCAAG
* * * * * *
80700069 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
80700109 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
80700149 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
80700189 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
80700215 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:80700229 original size:40 final size:40
Alignment explanation
Indices: 80700101--80700252 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
80700091 ATCACGATTT
* * * **
80700101 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
80700141 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
80700181 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
80700221 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
80700253 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:80702882 original size:17 final size:18
Alignment explanation
Indices: 80702840--80702888 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
80702830 AGTTGAAAAG
80702840 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
80702859 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
80702876 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
80702889 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:80703776 original size:40 final size:40
Alignment explanation
Indices: 80703710--80703876 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80703700 AAATTGAATG
* * *
80703710 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
80703749 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80703789 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80703829 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80703869 ATATCCGG
1 ATATCCGG
80703877 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80710483 original size:40 final size:40
Alignment explanation
Indices: 80710439--80710662 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
80710429 TATTCAGATG
80710439 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
80710479 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
80710522 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
80710562 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
80710602 ATATCCGGGATAAGACCCGAAGGCATTTGCGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
80710642 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
80710663 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 12 0.07
40 113 0.69
41 1 0.01
43 38 0.23
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:80710582 original size:83 final size:80
Alignment explanation
Indices: 80710443--80710662 Score: 291
Period size: 83 Copynumber: 2.7 Consensus size: 80
80710433 CAGATGATAT
* **
80710443 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
80710508 TGCGAGTAGTTACTATAC
66 TGC---TAGTGACTATAC
*
80710526 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
80710591 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * * *
80710606 CCGGGATAAGACCCGAAGGCATTTGCGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
80710663 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 14 0.11
80 45 0.36
81 2 0.02
83 64 0.51
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:80713038 original size:84 final size:84
Alignment explanation
Indices: 80712888--80713045 Score: 217
Period size: 84 Copynumber: 1.9 Consensus size: 84
80712878 ATATCATACA
** * * *
80712888 ATGCCAACGTCCCAGATGTGGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCCAAACAGGGT
80712953 CTTACACGAATTAAATATG
66 CTTACACGAATTAAATATG
* * * * **
80712972 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTACATATTGATGCCAATGTCCCAAACTTGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCCAAACAGGGT
80713037 CTTACACGA
66 CTTACACGA
80713046 GAACACATAT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCCAAACAGGGT
CTTACACGAATTAAATATG
Found at i:80713055 original size:43 final size:43
Alignment explanation
Indices: 80712888--80713044 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 43
80712878 ATATCATACA
* ** * *
80712888 ATGCCAACGTCCCAGATGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATTG
* * * *
80712931 ATGCCACTGTCCCAGACAGGGTCTTACACG-AATTAAATA-TG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATTG
* *
80712972 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATTG
* *
80713015 ATGCCAATGTCCCAAACTTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
80713045 AGAACACATA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
41 29 0.30
42 15 0.15
43 54 0.55
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATTG
Found at i:80714202 original size:14 final size:15
Alignment explanation
Indices: 80714185--80714213 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80714175 ACACGAAAAT
80714185 TTCACACAT-ATAAA
1 TTCACACATAATAAA
80714199 TTCACACATAATAAA
1 TTCACACATAATAAA
80714214 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:80717720 original size:163 final size:163
Alignment explanation
Indices: 80717446--80717777 Score: 630
Period size: 163 Copynumber: 2.0 Consensus size: 163
80717436 CATCCTTTAG
80717446 CAAG-GCACCACCCATGAGTATAACATACGTACCTGTACATATCCGTAGCATATCAAATAACTTT
1 CAAGTGCACCACCCATGAGTATAACATACGTACCTGTACATATCCGTAGCATATCAAATAACTTT
*
80717510 ACCTTCATTGCAATGCCCATCTTAGGACTTTCATCTCATCATTCATATAATACCCGTTGAACACT
66 ACCTTCATTGCAATGCCCAGCTTAGGACTTTCATCTCATCATTCATATAATACCCGTTGAACACT
80717575 CGAAATACTATTGGATACACGGAAAATTGCACA
131 CGAAATACTATTGGATACACGGAAAATTGCACA
*
80717608 CAAGTGCACCACCCATGAGTATAACGTACGTACCTGTACATATCCGTAGCATATCAAATAACTTT
1 CAAGTGCACCACCCATGAGTATAACATACGTACCTGTACATATCCGTAGCATATCAAATAACTTT
*
80717673 ACCTTCATTGCCATGCCCAGCTTAGGACTTTCATCTCATCATTCATATAATACCCGTTGAACACT
66 ACCTTCATTGCAATGCCCAGCTTAGGACTTTCATCTCATCATTCATATAATACCCGTTGAACACT
80717738 CGAAATACTATTGGATACACGGAAAATTGCACA
131 CGAAATACTATTGGATACACGGAAAATTGCACA
80717771 CAAGTGC
1 CAAGTGC
80717778 CACATAAACA
Statistics
Matches: 166, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
162 4 0.02
163 162 0.98
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (163 bp):
CAAGTGCACCACCCATGAGTATAACATACGTACCTGTACATATCCGTAGCATATCAAATAACTTT
ACCTTCATTGCAATGCCCAGCTTAGGACTTTCATCTCATCATTCATATAATACCCGTTGAACACT
CGAAATACTATTGGATACACGGAAAATTGCACA
Found at i:80720473 original size:26 final size:27
Alignment explanation
Indices: 80720415--80720585 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
80720405 CTTTAATCGA
*
80720415 TAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
*
80720442 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
*
80720469 T-AAATGACTGTTTTACCCTTATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
80720495 T-AAATGACTGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
* * * *
80720521 TAAAATGACTATTTTGCCCTTCTATGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
* *
80720548 TAAAATGACTATTTTTCCCTCATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
80720575 TAAAATGACTG
1 TAAAATGACTG
80720586 AAATTCCCCT
Statistics
Matches: 130, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 50 0.38
27 80 0.62
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTTCCCTTATGTGG
Found at i:80720497 original size:53 final size:54
Alignment explanation
Indices: 80720415--80720584 Score: 254
Period size: 53 Copynumber: 3.2 Consensus size: 54
80720405 CTTTAATCGA
* *
80720415 TAAAATGACTATTTTTCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTTCCCTTATGTGG
*
80720469 T-AAATGACTGTTTTACCCTTATGTGGT-AAATGACTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTTCCCTTATGTGG
* * * * *
80720521 TAAAATGACTATTTTGCCCTTCTATGGTAAAATGACTATTTTTCCCTCATGTGG
1 TAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTTCCCTTATGTGG
80720575 TAAAATGACT
1 TAAAATGACT
80720585 GAAATTCCCC
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
52 25 0.24
53 46 0.44
54 34 0.32
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (54 bp):
TAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTTCCCTTATGTGG
Found at i:80720602 original size:54 final size:54
Alignment explanation
Indices: 80720415--80720627 Score: 202
Period size: 54 Copynumber: 4.0 Consensus size: 54
80720405 CTTTAATCGA
* ** * *
80720415 TAAAATGACT-ATTTTTCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGA-TTTTCCCCTACATGGTAAAATGACTATTTTTCCCTTATGTGG
* ** *
80720469 T-AAATGACTG-TTTTACCCTTATGTGGT-AAATGACTGTTTTTCCCTTATGTGG
1 TAAAATGACTGATTTT-CCCCTACATGGTAAAATGACTATTTTTCCCTTATGTGG
* * *
80720521 TAAAATGACT-ATTTTGCCCTTCTATGGTAAAATGACTATTTTTCCCTCATGTGG
1 TAAAATGACTGATTTTCCCCTAC-ATGGTAAAATGACTATTTTTCCCTTATGTGG
** * * * *
80720575 TAAAATGACTGAAATTCCCCTACATGGTAAATTGACTATGTTGCCCCTATGTG
1 TAAAATGACTGATTTTCCCCTACATGGTAAAATGACTATTTTTCCCTTATGTG
80720628 ATATATGTTT
Statistics
Matches: 135, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
52 32 0.24
53 36 0.27
54 59 0.44
55 8 0.06
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (54 bp):
TAAAATGACTGATTTTCCCCTACATGGTAAAATGACTATTTTTCCCTTATGTGG
Found at i:80720621 original size:27 final size:26
Alignment explanation
Indices: 80720518--80720623 Score: 83
Period size: 27 Copynumber: 3.9 Consensus size: 26
80720508 TTCCCTTATG
*
80720518 TGGTAAAATGACTATTTTG-CCCTTCTA
1 TGGTAAAATGACTA-TTTGCCCCTAC-A
**
80720545 TGGTAAAATGACTATTTTTCCCT-CA
1 TGGTAAAATGACTATTTGCCCCTACA
*
80720570 TGTGGTAAAATGACTGAAATT-CCCCTACA
1 --TGGTAAAATGACT--ATTTGCCCCTACA
*
80720599 TGGTAAATTGACTATGTTGCCCCTA
1 TGGTAAAATGACTAT-TTGCCCCTA
80720624 TGTGATATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
25 2 0.03
26 6 0.09
27 49 0.74
28 4 0.06
29 5 0.08
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (26 bp):
TGGTAAAATGACTATTTGCCCCTACA
Found at i:80720957 original size:18 final size:18
Alignment explanation
Indices: 80720903--80720950 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
80720893 GGACTTGCAT
80720903 ACTATTTACTATTGCTGC
1 ACTATTTACTATTGCTGC
* *
80720921 ACTGTTCACTATTGCTGC
1 ACTATTTACTATTGCTGC
*
80720939 ATTATTTACTAT
1 ACTATTTACTAT
80720951 GACTGCAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (18 bp):
ACTATTTACTATTGCTGC
Found at i:80724171 original size:20 final size:20
Alignment explanation
Indices: 80724146--80724191 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
80724136 TAGGCCCACA
*
80724146 TGGGCCTACAATATGGGACT
1 TGGGCCTACAATATGGCACT
* *
80724166 TGGGCCTGCAATATGGCCCT
1 TGGGCCTACAATATGGCACT
80724186 TGGGCC
1 TGGGCC
80724192 CATTTTCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (20 bp):
TGGGCCTACAATATGGCACT
Found at i:80724412 original size:27 final size:27
Alignment explanation
Indices: 80724287--80724412 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 27
80724277 TCTTAATTGA
* * *
80724287 TAAAATGAGTGTTTTTCCCTTATCTGG
1 TAAAATGATTGTTTTGCCCTTATATGG
* *
80724314 TAAAATTATTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATATGG
*
80724341 TAAAATGATTGTTTTTCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATATGG
* *** * *
80724368 TAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGATTGTTTTGCCCTTATATGG
*
80724395 TAAATTGATTGTTTTGCC
1 TAAAATGATTGTTTTGCC
80724413 TCTATGTGAT
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATATGG
Found at i:80724766 original size:18 final size:18
Alignment explanation
Indices: 80724740--80724777 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
80724730 AGGACTTGCA
*
80724740 TACTGTTTACTATTACTG
1 TACTATTTACTATTACTG
*
80724758 TACTATTTACTGTTACTG
1 TACTATTTACTATTACTG
80724776 TA
1 TA
80724778 ATAGGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.50
Consensus pattern (18 bp):
TACTATTTACTATTACTG
Found at i:80728538 original size:21 final size:21
Alignment explanation
Indices: 80728514--80728581 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
80728504 CACATGCATC
80728514 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * *
80728535 ATGAGTTCAGATGTCACAAAT-A
1 ATGAACTCAGA--CCACAACTCA
80728557 TCATGAACTCAGACCACAACTCA
1 --ATGAACTCAGACCACAACTCA
80728580 AT
1 AT
80728582 AAGTTCAGAT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
21 11 0.32
22 7 0.21
23 7 0.21
24 9 0.26
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:80728551 original size:45 final size:45
Alignment explanation
Indices: 80728501--80728591 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
80728491 CCAAAACATG
** *
80728501 TGTCACATGCATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACAAACATCATGAACTCAGACCACAACTCAATAAGTTCAGA
*
80728546 TGTCACAAATATCATGAACTCAGACCACAACTCAATAAGTTCAGA
1 TGTCACAAACATCATGAACTCAGACCACAACTCAATAAGTTCAGA
80728591 T
1 T
80728592 CACATAGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (45 bp):
TGTCACAAACATCATGAACTCAGACCACAACTCAATAAGTTCAGA
Done.