Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 271 of 378
Found at i:81439735 original size:30 final size:30
Alignment explanation
Indices: 81439701--81439784 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 30
81439691 ACTTCGATCA
81439701 TGTATGTAGTACTAAGTGCAGGCTACTACG
1 TGTATGTAGTACTAAGTGCAGGCTACTACG
* * *
81439731 TGTAT-CAG-A-T-GGT-TAGG-T-C-ACG
1 TGTATGTAGTACTAAGTGCAGGCTACTACG
81439753 TG--TGTAGTACTAAGTGCAGGCTACTACG
1 TGTATGTAGTACTAAGTGCAGGCTACTACG
81439781 TGTA
1 TGTA
81439785 CTGGATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 20
0.59 0.09 0.31
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 6 0.16
23 2 0.05
24 3 0.08
25 6 0.16
26 3 0.08
27 2 0.05
28 6 0.16
29 2 0.05
30 5 0.13
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (30 bp):
TGTATGTAGTACTAAGTGCAGGCTACTACG
Found at i:81439777 original size:50 final size:48
Alignment explanation
Indices: 81439655--81439827 Score: 175
Period size: 50 Copynumber: 3.5 Consensus size: 48
81439645 GCTACTATGC
* * * * * *
81439655 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCATGTAT
1 GTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAA-TT-GGTCACGTGT
**
81439706 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAATT-GGTCACGTGT
* * *
81439756 GTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATAATTGGTCACGTGT
* *
81439805 GTAGTAGTAAGTGCAAGCTACTA
1 GTAGTACTAAGTGCAGGCTACTA
81439828 TGCGTACCAG
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 30 0.29
50 43 0.41
51 31 0.30
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (48 bp):
GTAGTACTAAGTGCAGGCTACTACGTGTACAGATAATTGGTCACGTGT
Found at i:81442727 original size:9 final size:9
Alignment explanation
Indices: 81442713--81442898 Score: 116
Period size: 9 Copynumber: 20.1 Consensus size: 9
81442703 TATGTATTAC
*
81442713 GTAAGTTAA
1 GTAAGTTAT
*
81442722 GTAAGTTTT
1 GTAAGTTAT
81442731 GTAAGTTAT
1 GTAAGTTAT
81442740 GTAAGTTAT
1 GTAAGTTAT
81442749 GTAAGTTAT
1 GTAAGTTAT
81442758 -TATATGATATAT
1 GTA-A-G-T-TAT
* *
81442770 ATTAAGTTTT
1 -GTAAGTTAT
81442780 GTAAGTTAT
1 GTAAGTTAT
81442789 GTAAGTTAT
1 GTAAGTTAT
81442798 GTAAGTTAT
1 GTAAGTTAT
*
81442807 -TATA-TGAT
1 GTA-AGTTAT
* *
81442815 ATATATTTAT
1 GTA-AGTTAT
81442825 GTATTATGTTAT
1 GTA--A-GTTAT
*
81442837 GTAAGTTAC
1 GTAAGTTAT
81442846 GTAAGTTAT
1 GTAAGTTAT
*
81442855 -TATA-TGAT
1 GTA-AGTTAT
* *
81442863 ATATATTTAT
1 GTA-AGTTAT
81442873 GT-A-TTAT
1 GTAAGTTAT
81442880 GTAAGTTAT
1 GTAAGTTAT
81442889 GTAAGTTAT
1 GTAAGTTAT
81442898 G
1 G
81442899 ATATCATGTA
Statistics
Matches: 146, Mismatches: 15, Indels: 32
0.76 0.08 0.17
Matches are distributed among these distances:
7 6 0.04
8 14 0.10
9 95 0.65
10 13 0.09
11 4 0.03
12 11 0.08
13 1 0.01
14 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:81442778 original size:49 final size:50
Alignment explanation
Indices: 81442723--81442898 Score: 254
Period size: 49 Copynumber: 3.6 Consensus size: 50
81442713 GTAAGTTAAG
81442723 TAAGT-TTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATAT
1 TAAGTATTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATAT
81442772 TAAGT-TTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATT
1 TAAGTATTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATA-T
* * *
81442822 TATGTA--T-TATGTTATGTAAGTTACGTAAGTTATTATATGATATATATT
1 TAAGTATTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATA-T
*
81442870 TATGTATTATGTAAGTTATGTAAGTTATG
1 TAAGTATT-TGTAAGTTATGTAAGTTATG
81442899 ATATCATGTA
Statistics
Matches: 116, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
48 45 0.39
49 49 0.42
50 5 0.04
51 1 0.01
52 16 0.14
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (50 bp):
TAAGTATTTGTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATAT
Found at i:81442855 original size:48 final size:48
Alignment explanation
Indices: 81442735--81442881 Score: 233
Period size: 48 Copynumber: 3.0 Consensus size: 48
81442725 AGTTTTGTAA
* * *
81442735 GTTATGTAAGTTATGTAAGTTATTATATGATATATA-TTAAGTTTTGTAA
1 GTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATG-TAT-TAT
81442784 GTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
1 GTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
*
81442832 GTTATGTAAGTTACGTAAGTTATTATATGATATATATTTATGTATTAT
1 GTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
81442880 GT
1 GT
81442882 AAGTTATGTA
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
48 51 0.55
49 38 0.41
50 4 0.04
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (48 bp):
GTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
Found at i:81445252 original size:74 final size:74
Alignment explanation
Indices: 81445158--81445417 Score: 251
Period size: 74 Copynumber: 3.5 Consensus size: 74
81445148 CGTAAACAAC
* * * ** *
81445158 TAATACACATCTGCGGCGTTTTTGTTGAAAACGCCGGTAAAAACAATGATAAAAACGATGACGCT
1 TAATACATATTTGCGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAAACGATGACGTT
81445223 TTGCTCTCT
66 TTGCTCTCT
* * *
81445232 TAATACATATTTGCGACGTTTATGTCAAAAACGCCACTAAAAACAATGATAAAATGAC-AT--CG
1 TAATACATATTTGCGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAA--ACGATGACG
* *
81445294 TTTTTCTCTCA
64 TTTTGCTCTCT
* * * * * * **
81445305 CAATACATATTTACGGCGTTTTTGTCGAAAATGCCACTAAAAAAAAGGATAAAAATGCGGACGTT
1 TAATACATATTTGCGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAAACGATGACGTT
*
81445370 TTGCACTCT
66 TTGCTCTCT
* * *
81445379 TAATACA-ACTTAGCGGCGTTTTT-TCGAAAATGCCGCTAA
1 TAATACATA-TTTGCGGCGTTTTTGTCGAAAACGCCACTAA
81445418 TGCACAACCT
Statistics
Matches: 151, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
71 1 0.01
73 72 0.48
74 74 0.49
75 2 0.01
76 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (74 bp):
TAATACATATTTGCGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAAACGATGACGTT
TTGCTCTCT
Found at i:81445341 original size:73 final size:74
Alignment explanation
Indices: 81445171--81445417 Score: 238
Period size: 73 Copynumber: 3.4 Consensus size: 74
81445161 TACACATCTG
* ** *
81445171 CGGCGTTTTTGTTGAAAACGCCGGTAAAAACAATGATAAAA--ACGATGACGCTTTGCTCTCTTA
1 CGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAATGACGAT--CGTTTTGCTCTCTTA
*
81445234 ATACATATTTG
64 ATACATATTTA
* * * * **
81445245 CGACGTTTATGTCAAAAACGCCACTAAAAACAATGATAAAATGAC-ATCGTTTTTCTCTCACAAT
1 CGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAATGACGATCGTTTTGCTCTCTTAAT
81445309 ACATATTTA
66 ACATATTTA
* * * *
81445318 CGGCGTTTTTGTCGAAAATGCCACTAAAAAAAAGGATAAAAATG-CGGA-CGTTTTGCACTCTTA
1 CGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGAT-AAAATGAC-GATCGTTTTGCTCTCTTA
*
81445381 ATACA-ACTTA
64 ATACATATTTA
* *
81445391 GCGGCGTTTTT-TCGAAAATGCCGCTAA
1 -CGGCGTTTTTGTCGAAAACGCCACTAA
81445418 TGCACAACCT
Statistics
Matches: 144, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
73 72 0.50
74 67 0.47
75 3 0.02
76 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (74 bp):
CGGCGTTTTTGTCGAAAACGCCACTAAAAACAATGATAAAATGACGATCGTTTTGCTCTCTTAAT
ACATATTTA
Found at i:81445485 original size:114 final size:113
Alignment explanation
Indices: 81445337--81445734 Score: 365
Period size: 115 Copynumber: 3.5 Consensus size: 113
81445327 TGTCGAAAAT
* * * * ** *
81445337 GCCACTAAAAAAAAGGATAAAAATGC-GGACGTTTTGCACTCTTAATACAACTTAGCGGCGTTTT
1 GCCACTAAAAACAAGGATAAAAA-ACACGACGTTTTGCACTCTTAATGCATTTTTGCGGCGTTTT
* * * * * *
81445401 T-TCGAAAATGCCGCTAATGCACAACCTTTTGCTGCGTTTTTGTGGAAAC
65 TGTTGAAAACGCCGGTAAAGAACAACCTTTTGC-GCGTTTTTGAGGAAAC
* * *
81445450 GCCACTAAAAACAAGGATAAAAAACAACAACGTTTTGTACTCTTAATGCATTTTTGTGGCGTTTT
1 GCCACTAAAAACAAGGATAAAAAAC-ACGACGTTTTGCACTCTTAATGCATTTTTGCGGCGTTTT
** * *
81445515 TGTTGTGAACACCGGTAAAGAACAACATTTTGCGGCGTTTTTGAGGAAAC
65 TGTTGAAAACGCCGGTAAAGAACAACCTTTTGC-GCGTTTTTGAGGAAAC
* * * ** * *
81445565 ACCACTATAAACAAGCATGGAAAACGATGACGTTTTGCACTTTTAATGCATTTTTGCGGCGTTTT
1 GCCACTAAAAACAAGGATAAAAAAC-ACGACGTTTTGCACTCTTAATGCATTTTTGCGGCGTTTT
** * *
81445630 TGTTGAAAACGTTGGTAAAGAACAACCTGTTGCGATGTTTTTGAGGAAAC
65 TGTTGAAAACGCCGGTAAAGAACAACCTTTTGCG-CGTTTTTGAGGAAAC
* * * *
81445680 GCCGCTAAAGAA-AAGGAT-AAAAACGATG-CTGTTTTGCACTCTTATTACATTTTTG
1 GCCACTAAA-AACAAGGATAAAAAAC-ACGAC-GTTTTGCACTCTTAATGCATTTTTG
81445735 GGCTGTATTT
Statistics
Matches: 231, Mismatches: 48, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
112 1 0.00
113 23 0.10
114 63 0.27
115 142 0.61
116 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (113 bp):
GCCACTAAAAACAAGGATAAAAAACACGACGTTTTGCACTCTTAATGCATTTTTGCGGCGTTTTT
GTTGAAAACGCCGGTAAAGAACAACCTTTTGCGCGTTTTTGAGGAAAC
Found at i:81446058 original size:6 final size:7
Alignment explanation
Indices: 81446031--81446236 Score: 76
Period size: 7 Copynumber: 28.7 Consensus size: 7
81446021 CTAATTACTT
81446031 TAAACCC
1 TAAACCC
81446038 TAAACCC
1 TAAACCC
81446045 TAAACCC
1 TAAACCC
81446052 T-AACCC
1 TAAACCC
* *
81446058 TCTATCCTC
1 T-AAACC-C
81446067 TAAACCC
1 TAAACCC
* *
81446074 TAAATCA
1 TAAACCC
* *
81446081 T-AATCA
1 TAAACCC
*
81446087 TAAACCA
1 TAAACCC
81446094 TAAACCC
1 TAAACCC
81446101 -ATAACCAC
1 TA-AACC-C
* *
81446109 TGACCCC
1 TAAACCC
*
81446116 TAAATCC
1 TAAACCC
*
81446123 TAAACCT
1 TAAACCC
81446130 TAAACCC
1 TAAACCC
* *
81446137 TAAATCA
1 TAAACCC
*
81446144 TAATCATCAC
1 TAA--A-CCC
81446154 TAAACCC
1 TAAACCC
* *
81446161 ATAATCCA
1 -TAAACCC
* *
81446169 AAAACCA
1 TAAACCC
*
81446176 TAAACCA
1 TAAACCC
*
81446183 TATACCC
1 TAAACCC
**
81446190 TAAACAT
1 TAAACCC
81446197 TAAACCC
1 TAAACCC
* *
81446204 TAAATCA
1 TAAACCC
*
81446211 TATACCC
1 TAAACCC
**
81446218 TAAACTA
1 TAAACCC
81446225 TAAACCC
1 TAAACCC
81446232 TAAAC
1 TAAAC
81446237 TATAATGATA
Statistics
Matches: 145, Mismatches: 43, Indels: 22
0.69 0.20 0.10
Matches are distributed among these distances:
6 13 0.09
7 110 0.76
8 16 0.11
9 3 0.02
10 3 0.02
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:81446202 original size:28 final size:28
Alignment explanation
Indices: 81446170--81446236 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
81446160 CATAATCCAA
*
81446170 AAACCATAAACCATATACCCTAAAC-ATT
1 AAACCCTAAACCATATACCCTAAACTA-T
*
81446198 AAACCCTAAATCATATACCCTAAACTAT
1 AAACCCTAAACCATATACCCTAAACTAT
81446226 AAACCCTAAAC
1 AAACCCTAAAC
81446237 TATAATGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (28 bp):
AAACCCTAAACCATATACCCTAAACTAT
Found at i:81446740 original size:40 final size:39
Alignment explanation
Indices: 81446696--81446802 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 39
81446686 AACCTATAGC
*
81446696 GCGTTTTTAAAAAAGCGCCGCTAATGCTCGATATATAATG
1 GCGTTTTT-AAAAAGCGCCGCTAATGCTCGATATATAACG
* * * * *
81446736 GCGTTTTTCTACAAGCGCCACTAATGCTCGATCTATAGCG
1 GCGTTTTT-AAAAAGCGCCGCTAATGCTCGATATATAACG
*
81446776 GCGTTTTCTAAAAAGCGTCGCTAATGC
1 GCGTTTT-TAAAAAGCGCCGCTAATGC
81446803 CACTAAAGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (39 bp):
GCGTTTTTAAAAAGCGCCGCTAATGCTCGATATATAACG
Found at i:81447264 original size:17 final size:17
Alignment explanation
Indices: 81447244--81447291 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
81447234 AATTTCATAC
81447244 ATATTTTATATG-TTATT
1 ATATTTTAT-TGTTTATT
81447261 ATATTTTATTGTTTATT
1 ATATTTTATTGTTTATT
*
81447278 ATATATTATT-TTTA
1 ATATTTTATTGTTTA
81447292 AACTAACATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 6 0.21
17 23 0.79
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (17 bp):
ATATTTTATTGTTTATT
Found at i:81447332 original size:27 final size:27
Alignment explanation
Indices: 81447275--81447332 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
81447265 TTTATTGTTT
*
81447275 ATTATATATTATTTTTAAACTAACATC
1 ATTATATATTATTTTTAAAATAACATC
*
81447302 --TATATA-TATTTTTAATAATAATATC
1 ATTATATATTATTTTTAA-AATAACATC
81447327 ATTATA
1 ATTATA
81447333 GGTTCTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 9 0.35
25 13 0.50
27 4 0.15
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTATATATTATTTTTAAAATAACATC
Found at i:81450025 original size:16 final size:16
Alignment explanation
Indices: 81450004--81450037 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
81449994 CATAGTTATT
81450004 TACTGTATGCAAATAA
1 TACTGTATGCAAATAA
81450020 TACTGTATGCAAATAA
1 TACTGTATGCAAATAA
81450036 TA
1 TA
81450038 TATGTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (16 bp):
TACTGTATGCAAATAA
Found at i:81450130 original size:16 final size:15
Alignment explanation
Indices: 81450106--81450139 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
81450096 CTTGCAAAGG
*
81450106 AAAATTTAGTAAAATA
1 AAAACTTAGTAAAA-A
81450122 AAAACTTAGTAAAAA
1 AAAACTTAGTAAAAA
81450137 AAA
1 AAA
81450140 GTAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.24
Consensus pattern (15 bp):
AAAACTTAGTAAAAA
Found at i:81455105 original size:26 final size:27
Alignment explanation
Indices: 81455069--81455121 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81455059 TGTCAGCTAG
* *
81455069 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
81455095 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
81455122 CAGAATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:81456328 original size:2 final size:2
Alignment explanation
Indices: 81456321--81456365 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
81456311 TAGAAGTCGA
*
81456321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81456362 AT AT
1 AT AT
81456366 TTTGAAAGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:81457019 original size:45 final size:45
Alignment explanation
Indices: 81456967--81457290 Score: 458
Period size: 45 Copynumber: 7.2 Consensus size: 45
81456957 CGGGCTTCGG
*
81456967 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
* *
81457012 GCCTAGCAGGCTATGATGCCTGTGAGATATTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
* *
81457057 GCCTAGCAGGCTATGATGCCGGTGAGATATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
*
81457102 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
* * *
81457147 GCCTAGCAGGTTATGATGCCAGTGAGATATTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
* *
81457192 GCCTAGCAGGCTGTAATGCCGGTGAGATACTATTCGGG-CTTTCGA
1 GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTT-GA
* * * * *
81457237 GCCTAGCAGGCTGTAATACCGGTGAAATGA-TA-TCGGGCC-TCGA
1 GCCTAGCAGGCTATGATGCCGGTGAGAT-ACTATTCGGGCCTTTGA
81457280 GCCTAGCAGGC
1 GCCTAGCAGGC
81457291 GATATGCATT
Statistics
Matches: 256, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
43 13 0.05
44 10 0.04
45 232 0.91
46 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
GCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTTGA
Found at i:81457211 original size:135 final size:135
Alignment explanation
Indices: 81456962--81457290 Score: 513
Period size: 135 Copynumber: 2.5 Consensus size: 135
81456952 GATATCGGGC
*
81456962 TTCGGGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGCTATG
1 TTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGCTATG
* * *
81457027 ATGCCTGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATATTATTC
66 ATGCCAGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTC
81457092 GAGCCT
131 G-GCCT
*
81457098 TT-GAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGTTATG
1 TTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGCTATG
*
81457162 ATGCCAGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTGTAATGCCGGTGAGATACTATTC
66 ATGCCAGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTC
*
81457227 GGGCT
131 GGCCT
* * * *
81457232 TTCGAGCCTAGCAGGCTGTAATACCGGTGAAATGA-TA-TCGGGCC-TCGAGCCTAGCAGGC
1 TTCGAGCCTAGCAGGCTATGATGCCGGTGAAAT-ACTATTCGGGCCTTTGAGCCTAGCAGGC
81457291 GATATGCATT
Statistics
Matches: 179, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
133 13 0.07
134 12 0.07
135 151 0.84
136 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (135 bp):
TTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGCTATG
ATGCCAGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTC
GGCCT
Found at i:81459560 original size:20 final size:20
Alignment explanation
Indices: 81459535--81459578 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
81459525 AGTAAATTAA
81459535 AATAAAGAAAAATATATG-GT
1 AATAAA-AAAAATATATGTGT
*
81459555 AAT-AAAAATATATATGTGT
1 AATAAAAAAAATATATGTGT
81459574 AATAA
1 AATAA
81459579 TTATATTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 7 0.33
20 4 0.19
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (20 bp):
AATAAAAAAAATATATGTGT
Found at i:81459584 original size:19 final size:18
Alignment explanation
Indices: 81459542--81459578 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81459532 TAAAATAAAG
81459542 AAAA-ATATATGGTAATA
1 AAAATATATATGGTAATA
81459559 AAAATATATATGTGTAATA
1 AAAATATATATG-GTAATA
81459578 A
1 A
81459579 TTATATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 7 0.39
19 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (18 bp):
AAAATATATATGGTAATA
Found at i:81459840 original size:17 final size:18
Alignment explanation
Indices: 81459805--81459848 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
81459795 ATTAATAAAG
*
81459805 TAAATAAACATAAAAGAA
1 TAAAGAAACATAAAAGAA
*
81459823 TAAAGAAAC-TAAAGGAA
1 TAAAGAAACATAAAAGAA
81459840 TAAAAGAAA
1 T-AAAGAAA
81459849 GAAATGAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.70, C:0.05, G:0.11, T:0.14
Consensus pattern (18 bp):
TAAAGAAACATAAAAGAA
Found at i:81460298 original size:17 final size:18
Alignment explanation
Indices: 81460276--81460311 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81460266 TAAATGAGTT
81460276 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
81460293 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
81460311 A
1 A
81460312 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:81462376 original size:46 final size:46
Alignment explanation
Indices: 81462302--81462688 Score: 548
Period size: 46 Copynumber: 8.5 Consensus size: 46
81462292 TCCCATCCAC
* * *
81462302 GGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
* * *
81462348 GGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
* *
81462394 GGTCTTATTCATTTC-TCGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCAT-ATCAGGTTGCCATGGTATCTTTCAACCAT
* *
81462440 GGTCTTATTCATTTCATATCACGCTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
* * * * * *
81462486 GGTCTTATTCATTTCCTGTCATGTCGCCATAGTATCTTTCAATCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
81462532 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
**
81462578 GGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
81462624 GGTCTTA--CATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
**
81462668 GGTCTTACACATTTCATATCA
1 GGTCTTATTCATTTCATATCA
81462689 AAGAGCACAC
Statistics
Matches: 313, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
44 44 0.14
45 5 0.02
46 263 0.84
47 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCAT
Found at i:81477665 original size:21 final size:20
Alignment explanation
Indices: 81477640--81477704 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
81477630 TAGCCTTCGG
81477640 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
* * * *
81477661 GCTTCAG-TTAG-TCTTCGG
1 GCTTCCGTTTAGCACTTTGT
81477679 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
81477700 GCTTC
1 GCTTC
81477705 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 7 0.21
19 7 0.21
20 5 0.15
21 14 0.42
ACGTcount: A:0.11, C:0.25, G:0.22, T:0.43
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:81477668 original size:39 final size:39
Alignment explanation
Indices: 81477622--81477710 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
81477612 GCTCTGTTGA
81477622 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
81477661 GCTTCAGTTAGTCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
81477700 GCTTCAGTTAG
1 GCTTCAGTTAG
81477711 ATTTCGGGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:81482258 original size:17 final size:18
Alignment explanation
Indices: 81482236--81482269 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
81482226 TAAATAAGCA
81482236 TAAAAGAAT-AAAGAAAC
1 TAAAAGAATAAAAGAAAC
81482253 TAAAAGAATAAAAGAAA
1 TAAAAGAATAAAAGAAA
81482270 GGAATGAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.74, C:0.03, G:0.12, T:0.12
Consensus pattern (18 bp):
TAAAAGAATAAAAGAAAC
Found at i:81482714 original size:17 final size:18
Alignment explanation
Indices: 81482692--81482727 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81482682 TAAATGAGTT
81482692 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
81482709 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
81482727 A
1 A
81482728 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:81483238 original size:22 final size:22
Alignment explanation
Indices: 81483180--81483240 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
81483170 ATGTGAATTG
*
81483180 AAAATT-TGATTGAAAAGTGGA
1 AAAATTGTAATTGAAAAGTGGA
81483201 AAATGATTG-AATTGAAAA-TGTGA
1 AAA--ATTGTAATTGAAAAGTG-GA
81483224 AAAATTGTAATTGAAAA
1 AAAATTGTAATTGAAAA
81483241 ATAGTGTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
21 7 0.21
22 11 0.32
23 16 0.47
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.30
Consensus pattern (22 bp):
AAAATTGTAATTGAAAAGTGGA
Found at i:81483890 original size:22 final size:22
Alignment explanation
Indices: 81483859--81483903 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
81483849 AAAGAAAGCA
*
81483859 AAACCCAGTATGTTAGGGCACG
1 AAACCCAGTACGTTAGGGCACG
*
81483881 AAACCTAGTACGTTAGGGCACG
1 AAACCCAGTACGTTAGGGCACG
81483903 A
1 A
81483904 TTCTTCGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (22 bp):
AAACCCAGTACGTTAGGGCACG
Found at i:81495038 original size:23 final size:23
Alignment explanation
Indices: 81495012--81495061 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
81495002 AAAACATAAA
81495012 ATTTCTATTTTATCAAATTTTTT
1 ATTTCTATTTTATCAAATTTTTT
* * * * *
81495035 ATTTTTCTTTTTTCTATTTTTTT
1 ATTTCTATTTTATCAAATTTTTT
81495058 ATTT
1 ATTT
81495062 TTTCTTAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTTCTATTTTATCAAATTTTTT
Found at i:81495233 original size:12 final size:15
Alignment explanation
Indices: 81495201--81495230 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
81495191 TATATATTGT
81495201 ATAATTTCAAAAATA
1 ATAATTTCAAAAATA
81495216 ATAATTT-AAAAATA
1 ATAATTTCAAAAATA
81495230 A
1 A
81495231 ATTCCATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATTTCAAAAATA
Found at i:81495488 original size:20 final size:22
Alignment explanation
Indices: 81495448--81495489 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
81495438 TTTAGTCATA
*
81495448 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
81495470 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
81495490 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:81495513 original size:13 final size:13
Alignment explanation
Indices: 81495497--81495521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81495487 TTTCAATTTT
81495497 ATTTTAATAATAA
1 ATTTTAATAATAA
81495510 ATTTTAATAATA
1 ATTTTAATAATA
81495522 TTATTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:81496455 original size:11 final size:11
Alignment explanation
Indices: 81496439--81496464 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81496429 AACAGGGATA
81496439 CCAAATGCAAT
1 CCAAATGCAAT
81496450 CCAAATGCAAT
1 CCAAATGCAAT
81496461 CCAA
1 CCAA
81496465 CAGGGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (11 bp):
CCAAATGCAAT
Found at i:81496584 original size:48 final size:48
Alignment explanation
Indices: 81496532--81496707 Score: 151
Period size: 48 Copynumber: 3.7 Consensus size: 48
81496522 AATGCCACAA
* *
81496532 CCAAACTGGAAGCTATCACACCTATGGGCAGACTGTTCAATGCCATGG
1 CCAAACTGGAAGCCACCACACCTATGGGCAGACTGTTCAATGCCATGG
* * * * * * * *
81496580 CCAAA-TAGGAACCCTCTACGCCTATGGGCAGATTGTTCAATGTCGTAG
1 CCAAACT-GGAAGCCACCACACCTATGGGCAGACTGTTCAATGCCATGG
* * * *
81496628 CCAAACGGGAACCCACCACA-ATCATGGGCAGACTG-CCAAATGCCATGG
1 CCAAACTGGAAGCCACCACACCT-ATGGGCAGACTGTTC-AATGCCATGG
* * *
81496676 TCAAACCGGAAGTCACCACACCTATGGGCAGA
1 CCAAACTGGAAGCCACCACACCTATGGGCAGA
81496708 TTGCCCAATG
Statistics
Matches: 98, Mismatches: 25, Indels: 10
0.74 0.19 0.08
Matches are distributed among these distances:
47 3 0.03
48 94 0.96
49 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.23, T:0.18
Consensus pattern (48 bp):
CCAAACTGGAAGCCACCACACCTATGGGCAGACTGTTCAATGCCATGG
Found at i:81499789 original size:20 final size:20
Alignment explanation
Indices: 81499760--81499809 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
81499750 AATTCAAATG
*
81499760 GTTGCCCTACTAATGATTTT
1 GTTGCTCTACTAATGATTTT
81499780 GTTGCTCTACTAATGATTTT
1 GTTGCTCTACTAATGATTTT
81499800 GTTGCTCTAC
1 GTTGCTCTAC
81499810 AACAACTGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (20 bp):
GTTGCTCTACTAATGATTTT
Found at i:81506559 original size:46 final size:46
Alignment explanation
Indices: 81506504--81506868 Score: 464
Period size: 46 Copynumber: 8.0 Consensus size: 46
81506494 GCTTTCTGAA
*
81506504 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
81506550 ATAAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATAAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
81506596 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
81506642 ATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
81506688 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * ** ** * *
81506734 -GGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
81506779 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCATCCTAAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
81506825 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
81506869 TCAAAGATAA
Statistics
Matches: 280, Mismatches: 37, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
45 37 0.13
46 243 0.87
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:81506882 original size:137 final size:135
Alignment explanation
Indices: 81506515--81506886 Score: 440
Period size: 137 Copynumber: 2.7 Consensus size: 135
81506505 TGAAATGTGT
81506515 AAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* ** * *
81506580 A-TCATGGCAACATAATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACATGATAT
66 ACT-ATGGCAACAT-GTA--AAATGAATAAGACCATAGTTGAAAGATACCATGGCAACATAACAT
***
81506644 GAAATGTGT
127 GAAATGAAC
*
81506653 AAGACCATGGTTGAAAGATACCGTGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* ** * **
81506718 ACCATGGCAACATGATGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATGA
66 ACTATGGCAACATG-T-AAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACATAACATGA
81506783 AATGAAC
129 AATGAAC
* *** * * * *
81506790 AAGACCATGGTTGAAAGATACCATGGCATCCTAATAGAAAATGAGTAAGACCATAGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* *
81506855 ACTATGGCATCATGTCAAAGATAAATAAGACC
66 ACTATGGCAACATGT-AAA-ATGAATAAGACC
81506887 GTGGATGGGA
Statistics
Matches: 200, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
136 2 0.01
137 122 0.61
138 76 0.38
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (135 bp):
AAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
ACTATGGCAACATGTAAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACATAACATGAAA
TGAAC
Found at i:81507170 original size:16 final size:17
Alignment explanation
Indices: 81507149--81507181 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81507139 ATGATGGAGC
81507149 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
81507165 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
81507182 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:81510299 original size:17 final size:18
Alignment explanation
Indices: 81510264--81510301 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
81510254 CTTTAGGATT
81510264 TATTTTTTTTCCTTCTTC
1 TATTTTTTTTCCTTCTTC
81510282 TATTTTTTATT-CTT-TTC
1 TATTTTTT-TTCCTTCTTC
81510299 TAT
1 TAT
81510302 CCTTCTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 11 0.58
19 2 0.11
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTTTTCCTTCTTC
Found at i:81511545 original size:38 final size:38
Alignment explanation
Indices: 81511494--81511583 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
81511484 CTAACACTGT
81511494 AAGTGTAGGGATGGCGTGGGTGATTTATTCCCCACAGG
1 AAGTGTAGGGATGGCGTGGGTGATTTATTCCCCACAGG
81511532 AAGTGTAGGGATGGCGTGGGTGATTTATTCCCCACAGG
1 AAGTGTAGGGATGGCGTGGGTGATTTATTCCCCACAGG
81511570 AAGTGTAGGGATGG
1 AAGTGTAGGGATGG
81511584 ACGGAGGGAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.22, C:0.13, G:0.39, T:0.26
Consensus pattern (38 bp):
AAGTGTAGGGATGGCGTGGGTGATTTATTCCCCACAGG
Found at i:81511622 original size:24 final size:24
Alignment explanation
Indices: 81511586--81511635 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
81511576 AGGGATGGAC
81511586 GGAGGGAAGTGCAGGGTTGGATGG
1 GGAGGGAAGTGCAGGGTTGGATGG
*
81511610 GGAGGGAATTGCAGGGTTGGATGG
1 GGAGGGAAGTGCAGGGTTGGATGG
81511634 GG
1 GG
81511636 TTATCATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.04, G:0.58, T:0.18
Consensus pattern (24 bp):
GGAGGGAAGTGCAGGGTTGGATGG
Found at i:81511712 original size:20 final size:21
Alignment explanation
Indices: 81511669--81511714 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
81511659 ACTGTTCTGT
81511669 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
81511689 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
81511708 TATGGGC
1 TATGGGC
81511715 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:81515827 original size:17 final size:19
Alignment explanation
Indices: 81515793--81515829 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81515783 TTAGGATTTT
*
81515793 TTTTTTTTTCCTTCTTCTA
1 TTTTTTATTCCTTCTTCTA
81515812 TTTTTTATT-CTT-TTCTA
1 TTTTTTATTCCTTCTTCTA
81515829 T
1 T
81515830 CCTTCTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTATTCCTTCTTCTA
Found at i:81517178 original size:20 final size:21
Alignment explanation
Indices: 81517135--81517180 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
81517125 ACTGTTCTGT
81517135 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
81517155 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
81517174 TATGGGC
1 TATGGGC
81517181 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:81517301 original size:28 final size:27
Alignment explanation
Indices: 81517209--81517320 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 27
81517199 ACTTGTAATA
* *
81517209 GGGCTACGACCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
** *
81517237 GGGCTAGGCCCAGTATACTCTGTTACTG-TAA
1 GGGCTAGGCCCAG---A-T-TAATACTGATAT
81517268 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
* *
81517296 GGGCTAAGGCCTAG-TTAACACTGAT
1 GGGCT-AGGCCCAGATTAATACTGAT
81517321 TTCTGAATAG
Statistics
Matches: 68, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
27 22 0.32
28 20 0.29
29 2 0.03
30 1 0.01
31 9 0.13
32 14 0.21
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATACTGATAT
Found at i:81524337 original size:69 final size:69
Alignment explanation
Indices: 81524158--81524442 Score: 239
Period size: 69 Copynumber: 4.1 Consensus size: 69
81524148 ATGAACAAGG
* * ** * * * **
81524158 AGGTGATATTGAGCACAAGGGTCGGGAAGAATCACA-TGTTGAAACCGGAGGAAAGACCAATGGT
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGT-TTGAAGCCGGAGGAAAGGCGGATGGT
*
81524222 GGAGA
65 GGAAA
* * * * * *
81524227 AGGTGATAATGTGCAAAAGGCTAAGCAAGAATCACATTTTGATGCCGGAGGAAAGGCGGATGGTG
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
81524292 GAAA
66 GAAA
* * * * ** * * *** *
81524296 AGGTGATAATGAGCACAAGGGTAAGGACGAATTGCGGTTTGAAGCCGCTGGAAAAGTGGACAATA
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
*
81524361 CAAA
66 GAAA
* * * * *
81524365 AGGTGATAACGAGTAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCAGAGGACAGGCAGATGGTG
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
81524430 GAAA
66 GAAA
*
81524434 AGGCGATAA
1 AGGTGATAA
81524443 GGAGGGTCAG
Statistics
Matches: 164, Mismatches: 51, Indels: 2
0.76 0.24 0.01
Matches are distributed among these distances:
69 163 0.99
70 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.34, T:0.16
Consensus pattern (69 bp):
AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
GAAA
Found at i:81526689 original size:16 final size:17
Alignment explanation
Indices: 81526659--81526691 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81526649 ATTTAAATAT
81526659 AAAATATTTATTCTTTA
1 AAAATATTTATTCTTTA
81526676 AAAATATTTA-TCTTTA
1 AAAATATTTATTCTTTA
81526692 TATTGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
AAAATATTTATTCTTTA
Found at i:81527125 original size:6 final size:6
Alignment explanation
Indices: 81527114--81527147 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
81527104 TATATTTGTA
**
81527114 AACTAT AACTAT AGTTAT AACTAT AACTAT AACT
1 AACTAT AACTAT AACTAT AACTAT AACTAT AACT
81527148 CTTTATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (6 bp):
AACTAT
Found at i:81528308 original size:11 final size:11
Alignment explanation
Indices: 81528294--81528337 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
81528284 AGATAAATAT
81528294 TATTTTATTAA
1 TATTTTATTAA
*
81528305 TATTTTAATAA
1 TATTTTATTAA
* *
81528316 TATATTTATGAT
1 TAT-TTTATTAA
81528328 TATTTTATTA
1 TATTTTATTA
81528338 TTTTATTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 19 0.70
12 8 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:81528323 original size:23 final size:22
Alignment explanation
Indices: 81528289--81528334 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
81528279 TAATTAGATA
* *
81528289 AATATTATTTTATTAATATTTT
1 AATAATATTTTATGAATATTTT
*
81528311 AATAATATATTTATGATTATTTT
1 AATAATAT-TTTATGAATATTTT
81528334 A
1 A
81528335 TTATTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
AATAATATTTTATGAATATTTT
Found at i:81542863 original size:2 final size:2
Alignment explanation
Indices: 81542858--81542891 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
81542848 ACACACACAC
81542858 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
81542892 CTAAATCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81556513 original size:3 final size:3
Alignment explanation
Indices: 81556495--81556629 Score: 207
Period size: 3 Copynumber: 45.0 Consensus size: 3
81556485 AAACTTTCCA
* *
81556495 TTC TTC ATC CTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * *
81556543 TTC TTC TTC TTA TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
81556591 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
81556630 AGTTCATTTA
Statistics
Matches: 127, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 127 1.00
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:81559828 original size:9 final size:9
Alignment explanation
Indices: 81559811--81559847 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
81559801 TGAGTTTTCG
81559811 AATTCGAAT
1 AATTCGAAT
*
81559820 AACTCGAAT
1 AATTCGAAT
81559829 AATTCGAAT
1 AATTCGAAT
81559838 AATTCGAAT
1 AATTCGAAT
81559847 A
1 A
81559848 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:81563825 original size:71 final size:72
Alignment explanation
Indices: 81563725--81563866 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 72
81563715 TTGTTGTATT
* * * *
81563725 TTGGACTTTTGCTTATGTTTATTTTATTATAATCTTGTTGTGTTGTTGTTTATTTCAACTCAAGT
1 TTGGACTATTACTTATGTTTATTTTATTATAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
81563790 TGTTTAC
66 TGTTTAC
** *
81563797 TTGGACTATTACTTATG-TTATTTTATTATAATCTTGTTGTATTGTTGTTTACTTGGACTCATGT
1 TTGGACTATTACTTATGTTTATTTTATTATAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
81563861 TGTTTA
66 TGTTTA
81563867 TTTAGACTGA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 48 0.76
72 15 0.24
ACGTcount: A:0.19, C:0.09, G:0.15, T:0.56
Consensus pattern (72 bp):
TTGGACTATTACTTATGTTTATTTTATTATAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
TGTTTAC
Found at i:81567024 original size:28 final size:28
Alignment explanation
Indices: 81566984--81567037 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
81566974 ATGACATAGG
*
81566984 ATTCCGAGATGTGTTTTCGTGTAAGAGA
1 ATTCCAAGATGTGTTTTCGTGTAAGAGA
81567012 ATTCCAAGATGTGTTTTCGTGTAAGA
1 ATTCCAAGATGTGTTTTCGTGTAAGA
81567038 CTGCGTCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (28 bp):
ATTCCAAGATGTGTTTTCGTGTAAGAGA
Found at i:81567146 original size:42 final size:43
Alignment explanation
Indices: 81567070--81567175 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 43
81567060 GATTTGAGAT
* * *
81567070 TTACGTGTAAGACAATGTCTGGGACATCGACATCG-TACATGA
1 TTACATGTAAGACCATGTCTGGGACAGCGACATCGATACATGA
* * * * **
81567112 TTTCATGTAAGACCCTGTCTGGGACAGGGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGCGACATCGATACATGA
*
81567155 TTACATGTAAGACCACGTCTG
1 TTACATGTAAGACCATGTCTG
81567176 AGACGTTGGC
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
42 28 0.55
43 23 0.45
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGCGACATCGATACATGA
Found at i:81570040 original size:22 final size:22
Alignment explanation
Indices: 81570015--81570057 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81570005 TAATTTTAAG
81570015 TTTA-AATTTGTACTAACTATTC
1 TTTATAATTTGT-CTAACTATTC
**
81570037 TTTATTTTTTGTCTAACTATT
1 TTTATAATTTGTCTAACTATT
81570058 GTAATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.58
Consensus pattern (22 bp):
TTTATAATTTGTCTAACTATTC
Found at i:81571029 original size:15 final size:15
Alignment explanation
Indices: 81571009--81571060 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
81570999 GCTGCAAAGC
81571009 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
81571024 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
81571043 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
81571058 ATT
1 ATT
81571061 AATATTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:81571123 original size:16 final size:16
Alignment explanation
Indices: 81571092--81571128 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
81571082 ATATGAAGAA
81571092 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
81571108 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
81571124 TATTA
1 TATTA
81571129 AAATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:81574048 original size:23 final size:23
Alignment explanation
Indices: 81574021--81574088 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
81574011 TGAGGTTAGC
81574021 ATTTGGGTTGTTGAATATGCCGA
1 ATTTGGGTTGTTGAATATGCCGA
* * *
81574044 ATTTGGATAG--G-TTA-G-C--
1 ATTTGGGTTGTTGAATATGCCGA
81574060 ATTTGGGTTGTTGAATATGCCGA
1 ATTTGGGTTGTTGAATATGCCGA
81574083 ATTTGG
1 ATTTGG
81574089 ATTTAGGGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 14
0.62 0.12 0.27
Matches are distributed among these distances:
16 8 0.25
18 2 0.06
19 3 0.09
20 3 0.09
21 2 0.06
23 14 0.44
ACGTcount: A:0.22, C:0.07, G:0.31, T:0.40
Consensus pattern (23 bp):
ATTTGGGTTGTTGAATATGCCGA
Found at i:81574056 original size:39 final size:39
Alignment explanation
Indices: 81574013--81574090 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81574003 TTAAACGTTG
81574013 AGGTTAGCATTTGGGTTGTTGAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTGAATATGCCGAATTTGGAT
81574052 AGGTTAGCATTTGGGTTGTTGAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTGAATATGCCGAATTTGGAT
81574091 TTAGGGAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTGAATATGCCGAATTTGGAT
Found at i:81575331 original size:2 final size:2
Alignment explanation
Indices: 81575324--81575367 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
81575314 ATGTGTTATG
81575324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81575366 AT
1 AT
81575368 GTGCATGATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81575536 original size:40 final size:39
Alignment explanation
Indices: 81575385--81575525 Score: 194
Period size: 39 Copynumber: 3.6 Consensus size: 39
81575375 ATAATGGAGA
*
81575385 ATTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
81575424 GTTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
81575463 GTTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
81575502 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
81575526 CATGCTTTGT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 72 0.77
40 21 0.23
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:81584511 original size:21 final size:20
Alignment explanation
Indices: 81584487--81584525 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
81584477 TTATAAATGA
*
81584487 AATTAATTTTTTTAATTTTAG
1 AATTAATTTATTT-ATTTTAG
*
81584508 AATTTATTTATTTATTTT
1 AATTAATTTATTTATTTT
81584526 GGTAGTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
AATTAATTTATTTATTTTAG
Found at i:81584996 original size:5 final size:5
Alignment explanation
Indices: 81584982--81585013 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81584972 TTCTTCTTTT
81584982 AAAA- AAAAG AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
81585014 TTGTTAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:81595386 original size:15 final size:17
Alignment explanation
Indices: 81595360--81595392 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
81595350 ATTTTATATG
81595360 TTAAATTATTATG-AAT
1 TTAAATTATTATGTAAT
81595376 TTAAATT-TTATGTAAT
1 TTAAATTATTATGTAAT
81595392 T
1 T
81595393 AATAAAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TTAAATTATTATGTAAT
Found at i:81596034 original size:22 final size:22
Alignment explanation
Indices: 81595995--81596045 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
81595985 TTAATAATAT
*
81595995 TCTAAAATCCTAAACTTGAAAC
1 TCTAAAATCATAAACTTGAAAC
* * *
81596017 TCTAAAATTATAATCTTGGAAC
1 TCTAAAATCATAAACTTGAAAC
*
81596039 CCTAAAA
1 TCTAAAA
81596046 CTTAGTCATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.29
Consensus pattern (22 bp):
TCTAAAATCATAAACTTGAAAC
Found at i:81602061 original size:27 final size:27
Alignment explanation
Indices: 81602009--81602149 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
81601999 GTGATGGAGT
81602009 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
* *
81602036 CACTAGAACAGATATATGTGGTAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
81602063 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
*
81602090 CACCAGGACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
81602117 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
81602144 CACCAG
1 CACCAG
81602150 GACGCTTCCT
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 87 0.89
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:81602081 original size:54 final size:54
Alignment explanation
Indices: 81601991--81602149 Score: 232
Period size: 54 Copynumber: 3.0 Consensus size: 54
81601981 GCGAGGCTGC
* * * * *
81601991 CAGATAT-TGTGATGGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACTAGAA
1 CAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
*
81602044 CAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
*
81602098 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
81602150 GACGCTTCCT
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
53 12 0.12
54 85 0.88
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (54 bp):
CAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:81602150 original size:54 final size:54
Alignment explanation
Indices: 81602009--81602152 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
81601999 GTGATGGAGT
* * * *
81602009 CACCAGATACAGAT-ATTGTGGCAGAGCCACTAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81602063 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81602117 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
81602153 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:81602579 original size:215 final size:214
Alignment explanation
Indices: 81602205--81602636 Score: 837
Period size: 215 Copynumber: 2.0 Consensus size: 214
81602195 ATAATCATGG
81602205 CATACATCATACAGAATCAGATCGTCATGCTTTTCAGTCAAAATTAACCCTAGGGGTATAACGGT
1 CATACATCATACAGAATCAGATCGTCATGCTTTTCAGTCAAAATTAACCCTAGGGGTATAACGGT
*
81602270 AATTTTGCACCTAGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAATAATTTAGCTACT
66 AATTTTGCACCTAGGGTATAACAATAATTTTCCATACATAGGGGTATTATAATAATTTAGCTACT
81602335 TTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAACACTTACCGCGCATACTTAC
131 TTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAACACTTACCGCGCATACTTAC
*
81602400 CGAATTGGGCCCGTTGGTC
196 CGAATTGGGCCCATTGGTC
81602419 CATACATCATACAGAATCAGATCGTCATGCTTTTCAGTCAAAATTAACCCTAGGGGTATAACGGT
1 CATACATCATACAGAATCAGATCGTCATGCTTTTCAGTCAAAATTAACCCTAGGGGTATAACGGT
81602484 AATTTTGCACCTAGGGGTATAACAATAATTTTCCATACATAGGGGTATTATAATAATTTAGCTAC
66 AATTTTGCACCTA-GGGTATAACAATAATTTTCCATACATAGGGGTATTATAATAATTTAGCTAC
81602549 TTTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAACACTTACCGCGCATACTTA
130 TTTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAACACTTACCGCGCATACTTA
81602614 CCGAATTGGGCCCATTGGTC
195 CCGAATTGGGCCCATTGGTC
81602634 CAT
1 CAT
81602637 GAACCCGATC
Statistics
Matches: 215, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
214 78 0.36
215 137 0.64
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (214 bp):
CATACATCATACAGAATCAGATCGTCATGCTTTTCAGTCAAAATTAACCCTAGGGGTATAACGGT
AATTTTGCACCTAGGGTATAACAATAATTTTCCATACATAGGGGTATTATAATAATTTAGCTACT
TTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAACACTTACCGCGCATACTTAC
CGAATTGGGCCCATTGGTC
Found at i:81604012 original size:26 final size:26
Alignment explanation
Indices: 81603982--81604037 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
81603972 TGAAATTCCC
81603982 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
81604008 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
81604034 ATCA
1 ATCA
81604038 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81604861 original size:30 final size:31
Alignment explanation
Indices: 81604801--81604862 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
81604791 CATTTATTTA
* *
81604801 AATGTGTATAAATGAATCAAATTTAAAGTTT
1 AATGTGTATAAATGAATCAAAATCAAAGTTT
* *
81604832 AATGTGTATAATTGCA-CAAAATCAAAGTTT
1 AATGTGTATAAATGAATCAAAATCAAAGTTT
81604862 A
1 A
81604863 TGTATCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (31 bp):
AATGTGTATAAATGAATCAAAATCAAAGTTT
Found at i:81607323 original size:7 final size:7
Alignment explanation
Indices: 81607311--81607340 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
81607301 AAGATGAAAC
81607311 AAATAGG
1 AAATAGG
81607318 AAATAGG
1 AAATAGG
81607325 AAATAGG
1 AAATAGG
81607332 AAATAGG
1 AAATAGG
81607339 AA
1 AA
81607341 CTAACATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13
Consensus pattern (7 bp):
AAATAGG
Found at i:81609125 original size:71 final size:71
Alignment explanation
Indices: 81609039--81609202 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
81609029 CGATTTGTCT
81609039 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
*
81609104 CTTTCA
66 CTTCCA
81609110 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81609175 CTTCCA
66 CTTCCA
81609181 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81609203 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTCCA
Found at i:81609240 original size:71 final size:70
Alignment explanation
Indices: 81609039--81609236 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
81609029 CGATTTGTCT
* * * *
81609039 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
*
81609104 CTTTCA
65 CTTCCA
* * * *
81609110 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
81609175 CTTCCA
65 CTTCCA
* *
81609181 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
81609237 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTCCA
Found at i:81611515 original size:2 final size:2
Alignment explanation
Indices: 81611510--81611541 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81611500 TGTACAAAAA
81611510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81611542 GTTCTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81617438 original size:29 final size:29
Alignment explanation
Indices: 81617405--81617507 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
81617395 CCTCCGAACT
** * * *
81617405 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
81617434 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81617463 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81617492 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81617508 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81625147 original size:29 final size:29
Alignment explanation
Indices: 81625114--81625274 Score: 250
Period size: 29 Copynumber: 5.6 Consensus size: 29
81625104 CCTCCGAACT
** * * *
81625114 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
81625143 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81625172 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81625201 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81625230 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81625259 CACACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81625275 ATCTCGTCAC
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 122 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81625176 original size:87 final size:87
Alignment explanation
Indices: 81625056--81625274 Score: 235
Period size: 87 Copynumber: 2.5 Consensus size: 87
81625046 TACTCGATTT
** * * ** * *
81625056 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * *
81625119 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* ** *
81625143 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
81625208 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
* *
81625230 CGCACACTTAGTGCCATATATTTCCAGCACACACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
81625275 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 4 0.04
87 103 0.94
88 3 0.03
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:81626570 original size:14 final size:15
Alignment explanation
Indices: 81626551--81626580 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
81626541 AAGATGAGCA
81626551 TTCTTTTTTTT-TTT
1 TTCTTTTTTTTCTTT
81626565 TTCTTTTTTTTCTTT
1 TTCTTTTTTTTCTTT
81626580 T
1 T
81626581 ACTAACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTCTTTTTTTTCTTT
Found at i:81628029 original size:12 final size:12
Alignment explanation
Indices: 81628012--81628036 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81628002 GTCAATAAAG
81628012 CGCACAACTAAT
1 CGCACAACTAAT
81628024 CGCACAACTAAT
1 CGCACAACTAAT
81628036 C
1 C
81628037 ACTTAAGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CGCACAACTAAT
Found at i:81630048 original size:76 final size:76
Alignment explanation
Indices: 81629917--81630066 Score: 273
Period size: 76 Copynumber: 2.0 Consensus size: 76
81629907 ACCATCTCCG
*
81629917 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCATTCCAATTAGGACCT
1 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
81629982 CGAAAAGCCAA
66 CGAAAAGCCAA
*
81629993 TCCAACCTTACACCTCATGTGGGGATATAATCGACCTACCCATCCCTGCACTCCAATTAGGACCT
1 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
*
81630058 GGAAAAGCC
66 CGAAAAGCC
81630067 TATTCAATCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.21
Consensus pattern (76 bp):
TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
CGAAAAGCCAA
Found at i:81630100 original size:76 final size:76
Alignment explanation
Indices: 81629917--81630111 Score: 237
Period size: 76 Copynumber: 2.6 Consensus size: 76
81629907 ACCATCTCCG
* * * *
81629917 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCATTCCAATTAGGACCT
1 TCCAACCTTACACCCCATATGGAGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
81629982 CGAAAAGCCAA
66 CGAAAAGCCAA
* * * *
81629993 TCCAACCTTACACCTCATGTGGGGATATAATCGACCTACCCATCCCTGCACTCCAATTAGGACCT
1 TCCAACCTTACACCCCATATGGAGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
* *
81630058 GGAAAAGCCTA
66 CGAAAAGCCAA
* * * * * * *
81630069 TTCAATCTTATACCCCCTATGGAGATTTAATCAACCCATCCAT
1 TCCAACCTTACACCCCATATGGAGATATAATCGACCCACCCAT
81630112 ACGATGTCAT
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 104 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (76 bp):
TCCAACCTTACACCCCATATGGAGATATAATCGACCCACCCATCCCTGCACTCCAATTAGGACCT
CGAAAAGCCAA
Found at i:81636742 original size:37 final size:37
Alignment explanation
Indices: 81636678--81636751 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
81636668 TTACAAGCCA
81636678 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
81636715 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
81636752 GACATTGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:81641681 original size:31 final size:31
Alignment explanation
Indices: 81641638--81641752 Score: 214
Period size: 31 Copynumber: 3.7 Consensus size: 31
81641628 TTAGTCTTGA
*
81641638 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
81641668 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
81641699 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
81641730 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
81641753 ACTGTAAATG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 78 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:81641823 original size:42 final size:42
Alignment explanation
Indices: 81641776--81641867 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
81641766 TGGCCCTTAG
* *
81641776 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGCATGCAA
*
81641818 GCCCATTTCAATATCACATGTAATGTCAATGAATGCATGTAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGCATGCAA
81641860 GCCCATTT
1 GCCCATTT
81641868 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGCATGCAA
Found at i:81642043 original size:25 final size:25
Alignment explanation
Indices: 81642015--81642084 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
81642005 CTCTTTTAAT
81642015 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
81642040 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81642065 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
81642085 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:81643050 original size:27 final size:26
Alignment explanation
Indices: 81643016--81643144 Score: 98
Period size: 27 Copynumber: 4.7 Consensus size: 26
81643006 ATCTACAAAC
81643016 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTCA-TAATTTTGTAAAT
* *
81643043 CAATGGTATTTTATAATTTT-TAGAAAGT
1 CAAGGGTATTTCATAATTTTGT--AAA-T
81643071 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTC-ATAATTTTGTAAAT
* * ** **
81643098 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTA-TTTCATAATTTTGTAAAT
**
81643125 TGAGGGTATTTCGATAATTT
1 CAAGGGTATTTC-ATAATTT
81643145 CACAAACCAG
Statistics
Matches: 81, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
25 1 0.01
26 10 0.12
27 44 0.54
28 17 0.21
29 8 0.10
30 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (26 bp):
CAAGGGTATTTCATAATTTTGTAAAT
Found at i:81643106 original size:55 final size:53
Alignment explanation
Indices: 81642989--81643144 Score: 152
Period size: 55 Copynumber: 2.9 Consensus size: 53
81642979 TTTCATCCTA
* * * * *
81642989 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCA-TAATTTTGTAAAT
* *
81643043 CAATGGTATTTT-ATAATTTTTAGAAAGTCAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTTGATAA-TTTTACAAA-TCAAGGGTATTTC-ATAATTTTGTAAAT
* * * **
81643098 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTT
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTC-ATAATTT
81643145 CACAAACCAG
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
54 34 0.41
55 42 0.51
56 4 0.05
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (53 bp):
CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCATAATTTTGTAAAT
Found at i:81643149 original size:27 final size:26
Alignment explanation
Indices: 81643073--81643224 Score: 142
Period size: 27 Copynumber: 5.7 Consensus size: 26
81643063 TAGAAAGTCA
** **
81643073 AGGGTATTTCTATAATTTTGTAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
*
81643099 AGGGGTATTTTGGTAATTTTACAAATT
1 A-GGGTATTTCGGTAATTTTACAAATT
* * **
81643126 GAGGGTATTTCGATAATTTCACAAACC
1 -AGGGTATTTCGGTAATTTTACAAATT
*
81643153 AGTGGTATTTCGGTAATTTTACAAACT
1 AG-GGTATTTCGGTAATTTTACAAATT
* *
81643180 AGAGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTCGGTAATTTTACAAATT
*
81643207 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
81643225 CTATCCTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.03
27 102 0.95
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:81643160 original size:54 final size:54
Alignment explanation
Indices: 81643099--81643224 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 54
81643089 TTTGTAAATT
*
81643099 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAGA-GGTATTTCGATAATTTCACAAACC
* * * * * *
81643153 AGTGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGATAATTTCACAAACC
81643207 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
81643225 CTATCCTACA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 59 0.95
55 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGATAATTTCACAAACC
Found at i:81643241 original size:54 final size:54
Alignment explanation
Indices: 81643099--81643254 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
81643089 TTTGTAAATT
* * * *
81643099 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTCGGTAATTCTACAAACTAG-GGGTATTTCGGTAATTTCACAAACC
* * * * * *
81643153 AGTGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
* ** *
81643207 AGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCA
1 AGGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTCGGTAATTTCA
81643255 TAATCGAGGG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 78 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
Found at i:81643241 original size:81 final size:81
Alignment explanation
Indices: 81643074--81643252 Score: 195
Period size: 81 Copynumber: 2.2 Consensus size: 81
81643064 AGAAAGTCAA
** * * *
81643074 GGGTATTTCTA-TAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GGGTATTTC-AGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCG
81643138 ATAATTTCACAAACCAG
65 ATAATTTCACAAACCAG
* * *
81643155 TGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTG
1 GGGTATTTCAGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCG
* **
81643219 GTAA-TTCTATCCTA-CAG
65 ATAATTTC-A-CAAACCAG
81643236 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
81643253 CATAATCGAG
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
80 3 0.04
81 74 0.91
82 4 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGA
TAATTTCACAAACCAG
Found at i:81643373 original size:81 final size:81
Alignment explanation
Indices: 81643287--81643453 Score: 253
Period size: 81 Copynumber: 2.1 Consensus size: 81
81643277 TTTGTAAACT
* * * * *
81643287 GAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAAT
1 GAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
*
81643352 GGTAATTCTATAAATC
66 GGTAATTCTACAAATC
* * *
81643368 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
81643433 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
81643449 GAGGG
1 GAGGG
81643454 CATTTCAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:81643436 original size:27 final size:27
Alignment explanation
Indices: 81643256--81643453 Score: 218
Period size: 27 Copynumber: 7.3 Consensus size: 27
81643246 GTAATTTCAT
***
81643256 AATCGAGGGTAAAAAAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
81643283 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
** *
81643310 AATTAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
81643337 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
81643364 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
81643391 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * **
81643418 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
81643445 AATCGAGGG
1 AATCGAGGG
81643454 CATTTCAATA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:81643439 original size:54 final size:54
Alignment explanation
Indices: 81643256--81643431 Score: 255
Period size: 54 Copynumber: 3.3 Consensus size: 54
81643246 GTAATTTCAT
** * * *
81643256 AATCGAGGGTAAAAAAATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGTGAAATGGTAATTCTATA
**
81643310 AATTAAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
* *
81643364 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
81643418 AATCGAGGGTAAAA
1 AATCGAGGGTAAAA
81643432 TGGTAATTCT
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 109 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
Found at i:81643466 original size:81 final size:81
Alignment explanation
Indices: 81643300--81643473 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
81643290 GGTAAAATGG
* * * * *
81643300 TAATTTTGTAAATTAAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATAA
1 TAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
* **
81643365 ATCGAGGGTAAAACGG
66 ATCGAGGGCAAAACAA
* * *
81643381 TAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
1 TAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
***
81643446 ATCGAGGGCATTTCAA
66 ATCGAGGGCAAAACAA
*
81643462 TAATTTGGTAAA
1 TAATTTTGTAAA
81643474 CTAAAGTATT
Statistics
Matches: 78, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (81 bp):
TAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
ATCGAGGGCAAAACAA
Found at i:81647708 original size:2 final size:2
Alignment explanation
Indices: 81647701--81647733 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
81647691 TGTACGACCA
81647701 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81647734 ACATCCACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81649642 original size:29 final size:28
Alignment explanation
Indices: 81649605--81649664 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
81649595 TAGTCCATAT
*
81649605 ATTTCATTTATTTCACATTTTAGTCCCTCA
1 ATTTCATTTATTTCACAATTTAG-CCCT-A
* *
81649635 ATTT-ATTTTTTTTACAATTTAGCCCTA
1 ATTTCATTTATTTCACAATTTAGCCCTA
81649662 ATT
1 ATT
81649665 ACTCAAATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 4 0.15
29 15 0.56
30 4 0.15
ACGTcount: A:0.25, C:0.18, G:0.03, T:0.53
Consensus pattern (28 bp):
ATTTCATTTATTTCACAATTTAGCCCTA
Found at i:81649986 original size:2 final size:2
Alignment explanation
Indices: 81649979--81650018 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
81649969 TTTATTTATC
*
81649979 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A- AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81650019 TAACATATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81650022 original size:12 final size:13
Alignment explanation
Indices: 81649983--81650026 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
81649973 TTTATCATAT
*
81649983 ATATATATATATAT
1 ATATATATATA-AC
81649997 ATATATATTATAAC
1 ATATATA-TATAAC
81650011 ATATATAT-TAAC
1 ATATATATATAAC
81650023 ATAT
1 ATAT
81650027 TATTTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 15 0.54
15 4 0.14
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATATATATAAC
Found at i:81651439 original size:57 final size:58
Alignment explanation
Indices: 81651319--81651464 Score: 154
Period size: 57 Copynumber: 2.5 Consensus size: 58
81651309 GTTGCTGATG
* * * * **
81651319 GGATTTAGCCTAGACCGGTAATCCTGATATAGTCCCTCTCGAGCATATATTACAATTA
1 GGATTTAGCCTGGACTGGTAATCCTAATATAGTCCCTCTCGAGCAGATATTACAAAAA
* *
81651377 CGATTTAGCCTGGACTGGTAATCCTAAT-T-GATCTCT-TCTGAGCAGATATTACAAAAA
1 GGATTTAGCCTGGACTGGTAATCCTAATATAG-TCCCTCTC-GAGCAGATATTACAAAAA
* * *
81651434 GGATTTAGCCTGCACTAGTAATCCTATTATA
1 GGATTTAGCCTGGACTGGTAATCCTAATATA
81651465 TGTTATAAGG
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
56 3 0.04
57 44 0.61
58 25 0.35
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (58 bp):
GGATTTAGCCTGGACTGGTAATCCTAATATAGTCCCTCTCGAGCAGATATTACAAAAA
Found at i:81658302 original size:39 final size:40
Alignment explanation
Indices: 81658194--81658378 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
81658184 TCGAATGATG
* * *
81658194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
81658233 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81658274 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
81658313 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81658352 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81658379 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:81658400 original size:79 final size:79
Alignment explanation
Indices: 81658249--81658401 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
81658239 ACTAAGATCT
* **
81658249 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
81658314 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
81658328 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
*
81658391 TATCC-GGTTAA
63 AATCCGGGTTAA
81658402 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:81662208 original size:2 final size:2
Alignment explanation
Indices: 81662201--81662228 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81662191 AGAACATGTT
81662201 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81662229 CATGAAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81663771 original size:40 final size:40
Alignment explanation
Indices: 81663645--81663852 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
81663635 CAATTGAATG
* * ** * **
81663645 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * **
81663685 ATACCCGGGTTAAGACTCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* * *
81663725 ACATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
81663765 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
81663805 CTATCCGGGCTAAGACTCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
81663845 ATATCCGG
1 ATATCCGG
81663853 TTGTATTCCG
Statistics
Matches: 134, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 4 0.03
40 125 0.93
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:81663786 original size:80 final size:80
Alignment explanation
Indices: 81663647--81663852 Score: 209
Period size: 80 Copynumber: 2.6 Consensus size: 80
81663637 ATTGAATGAT
* * * * * * * *
81663647 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACTCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
81663711 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
81663727 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
81663792 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* * * *
81663807 ATCCGGGCTAAGACTCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGG
81663853 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 2 0.02
80 100 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:81667389 original size:44 final size:43
Alignment explanation
Indices: 81667338--81667481 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 43
81667328 TATAATTTTG
*
81667338 TGTAAGACCACGTCTGGGATATTCGCATCGATTTGAGATTTACA
1 TGTAAGACCACGTCTGGGATATTAGCATCGATTT-AGATTTACA
* * *
81667382 TGTAAGACCATGTCTGGGACATTAGCATCGTATTTA-ATTT-CG
1 TGTAAGACCACGTCTGGGATATTAGCATCG-ATTTAGATTTACA
* * * *
81667424 TGTAAGACC-CTGTCTGGGATAGTGGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGATATTAGCATCGAT-TTAGATTTACA
81667467 TGTAAGACCACGTCT
1 TGTAAGACCACGTCT
81667482 AGGACGTTGG
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
41 2 0.02
42 29 0.35
43 19 0.23
44 29 0.35
45 4 0.05
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATATTAGCATCGATTTAGATTTACA
Found at i:81667438 original size:42 final size:41
Alignment explanation
Indices: 81667330--81667442 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 41
81667320 CAGCTATATA
* * *
81667330 TAATTTTGTGTAAGACCAC-GTCTGGGATATTCGCATCGATT
1 TAATTTCGTGTAAGACC-CTGTCTGGGACATTAGCATCGATT
* *
81667371 TGAGATTTACATGTAAGACCATGTCTGGGACATTAGCATCGTATT
1 T-A-ATTT-CGTGTAAGACCCTGTCTGGGACATTAGCATCG-ATT
81667416 TAATTTCGTGTAAGACCCTGTCTGGGA
1 TAATTTCGTGTAAGACCCTGTCTGGGA
81667443 TAGTGGCATC
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 20 0.33
43 8 0.13
44 27 0.45
45 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (41 bp):
TAATTTCGTGTAAGACCCTGTCTGGGACATTAGCATCGATT
Found at i:81667439 original size:86 final size:85
Alignment explanation
Indices: 81667330--81667486 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
81667320 CAGCTATATA
* * * *
81667330 TAATTTTGTGTAAGACCACGTCTGGGATATTCGCATCGAT-TTGAGATTTACATGTAAGACCATG
1 TAATTTCGTGTAAGACCACGTCTGGGATAGTCGCATCAATATT-AGA-TTACATGTAAGACCACG
*
81667394 TCTGGGACATTAGCATCGTATT
64 TCTAGGACATTAGCATCGTATT
* *
81667416 TAATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCATCAATATTTGATTACATGTAAGACCACGT
1 TAATTTCGTGTAAGACCAC-GTCTGGGATAGTCGCATCAATATTAGATTACATGTAAGACCACGT
81667480 CTAGGAC
65 CTAGGAC
81667487 GTTGGCATTG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 24 0.39
86 36 0.58
87 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (85 bp):
TAATTTCGTGTAAGACCACGTCTGGGATAGTCGCATCAATATTAGATTACATGTAAGACCACGTC
TAGGACATTAGCATCGTATT
Found at i:81667473 original size:43 final size:42
Alignment explanation
Indices: 81667295--81667475 Score: 132
Period size: 43 Copynumber: 4.2 Consensus size: 42
81667285 TGAGATATCG
* * * * ***
81667295 TGTAAGACCCTTTCTAGGATAGTGGCAGCTATATATAATTTTG
1 TGTAAGACCCTGTCTGGGATAGTGGCATC-ATATTTAATTACA
* * *
81667338 TGTAAGACCAC-GTCTGGGATATTCGCATCGAT-TTGAGATTTACA
1 TGTAAGACC-CTGTCTGGGATAGTGGCATC-ATATTTA-A-TTACA
* * * * * * *
81667382 TGTAAGACCATGTCTGGGACATTAGCATCGTATTTAATTTCG
1 TGTAAGACCCTGTCTGGGATAGTGGCATCATATTTAATTACA
*
81667424 TGTAAGACCCTGTCTGGGATAGTGGCATCAATATTTGATTACA
1 TGTAAGACCCTGTCTGGGATAGTGGCATC-ATATTTAATTACA
81667467 TGTAAGACC
1 TGTAAGACC
81667476 ACGTCTAGGA
Statistics
Matches: 106, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
42 30 0.28
43 45 0.42
44 31 0.29
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGATAGTGGCATCATATTTAATTACA
Found at i:81667493 original size:43 final size:42
Alignment explanation
Indices: 81667338--81667494 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 42
81667328 TATAATTTTG
** * *
81667338 TGTAAGACCACGTCTGGGATATTCGCATCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATTTA-A-TTACA
* * * * * *
81667382 TGTAAGACCATGTCTGGGACATTAGCATCGTATTTAATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTAATTACA
* *
81667424 TGTAAGACC-CTGTCTGGGATAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATATTTAATTACA
*
81667467 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
81667495 TGTACGAGTT
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 27 0.30
43 33 0.37
44 30 0.33
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTAATTACA
Found at i:81670509 original size:12 final size:13
Alignment explanation
Indices: 81670486--81670515 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
81670476 TCTGCGAGTG
81670486 AAATGCGGTACTA
1 AAATGCGGTACTA
81670499 AAATG-GGTACTA
1 AAATGCGGTACTA
81670511 AAATG
1 AAATG
81670516 TAGTTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (13 bp):
AAATGCGGTACTA
Found at i:81673106 original size:19 final size:19
Alignment explanation
Indices: 81673082--81673119 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81673072 CGTGCAGGTC
81673082 TACTTCTAATTACAGTGTT
1 TACTTCTAATTACAGTGTT
81673101 TACTTCTAATTACAGTGTT
1 TACTTCTAATTACAGTGTT
81673120 ACTCGGCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (19 bp):
TACTTCTAATTACAGTGTT
Found at i:81673454 original size:13 final size:15
Alignment explanation
Indices: 81673436--81673467 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
81673426 TTTACTCATC
81673436 AATCTCTT-CCT-TG
1 AATCTCTTACCTCTG
81673449 AATCTCTTACCTCTG
1 AATCTCTTACCTCTG
81673464 AATC
1 AATC
81673468 AGCCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (15 bp):
AATCTCTTACCTCTG
Found at i:81674456 original size:89 final size:89
Alignment explanation
Indices: 81674305--81674485 Score: 344
Period size: 89 Copynumber: 2.0 Consensus size: 89
81674295 CGTAGCTCTA
*
81674305 ATACCAATTAAATGAAACACCCCTAACCCGTATGTGTCGTCAGAATAGGGTTACGAGGCATTACC
1 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAGAATAGGGTTACGAGGCATTACC
81674370 GATCAATACACATCATTCATATAC
66 GATCAATACACATCATTCATATAC
*
81674394 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTTGTCAGAATAGGGTTACGAGGCATTACC
1 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAGAATAGGGTTACGAGGCATTACC
81674459 GATCAATACACATCATTCATATAC
66 GATCAATACACATCATTCATATAC
81674483 ATA
1 ATA
81674486 ACATATTCAT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (89 bp):
ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAGAATAGGGTTACGAGGCATTACC
GATCAATACACATCATTCATATAC
Found at i:81680578 original size:21 final size:22
Alignment explanation
Indices: 81680544--81680587 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
81680534 TATACATTCA
*
81680544 AAATTAATCCATTTAAT-CACC
1 AAATTAATCAATTTAATCCACC
* *
81680565 AAATTATTCAATTTCATCCACC
1 AAATTAATCAATTTAATCCACC
81680587 A
1 A
81680588 GCACATATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATTAATCAATTTAATCCACC
Done.