Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 272 of 378
Found at i:81686134 original size:31 final size:31
Alignment explanation
Indices: 81686096--81686159 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
81686086 TACGCTTCGA
81686096 TGGTGGACAATGCAACACTATTCTATTTCTT
1 TGGTGGACAATGCAACACTATTCTATTTCTT
**
81686127 TGGTGGACAATGTTACACTATTCTATTTCTT
1 TGGTGGACAATGCAACACTATTCTATTTCTT
81686158 TG
1 TG
81686160 AAAACCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (31 bp):
TGGTGGACAATGCAACACTATTCTATTTCTT
Found at i:81688513 original size:49 final size:49
Alignment explanation
Indices: 81688441--81688538 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
81688431 TGATTCATGC
*
81688441 ATGTCATCTAAATGCACCATGTAAATATTTCCTATTTTATATCCTACAA
1 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
81688490 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
1 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
81688539 GCATAATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (49 bp):
ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
Found at i:81704822 original size:13 final size:14
Alignment explanation
Indices: 81704806--81704838 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81704796 TCTATTTTAA
81704806 TTATCTTAATTG-T
1 TTATCTTAATTGTT
*
81704819 TTATTTTAATTGTT
1 TTATCTTAATTGTT
81704833 TTATCT
1 TTATCT
81704839 GACTTTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (14 bp):
TTATCTTAATTGTT
Found at i:81706074 original size:2 final size:2
Alignment explanation
Indices: 81706062--81706091 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
81706052 AAAATCAAAG
*
81706062 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
81706092 AATCAAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:81706507 original size:18 final size:17
Alignment explanation
Indices: 81706466--81706507 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
81706456 AATATGAAAA
81706466 ACAAAATATAATAACTC
1 ACAAAATATAATAACTC
81706483 ACTAAAATAT-ATACACTAC
1 AC-AAAATATAATA-ACT-C
81706502 ACAAAA
1 ACAAAA
81706508 AACCCAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.23
18 14 0.64
19 3 0.14
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (17 bp):
ACAAAATATAATAACTC
Found at i:81716364 original size:25 final size:25
Alignment explanation
Indices: 81716329--81716384 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
81716319 TTTATTTTCA
*
81716329 AATAATTTAAGTCAAAGTTTA-TAAT
1 AATAAATTAAGT-AAAGTTTATTAAT
* *
81716354 TATAAATTAAGTAAATTTTATTAAT
1 AATAAATTAAGTAAAGTTTATTAAT
81716379 AATAAA
1 AATAAA
81716385 AATAAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (25 bp):
AATAAATTAAGTAAAGTTTATTAAT
Found at i:81732868 original size:19 final size:20
Alignment explanation
Indices: 81732833--81732870 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
81732823 ATCAATTCCA
81732833 ATACTCATAGCAATAGTCAC
1 ATACTCATAGCAATAGTCAC
*
81732853 ATACTCAT-GGAATAGTCA
1 ATACTCATAGCAATAGTCA
81732871 AAGCATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (20 bp):
ATACTCATAGCAATAGTCAC
Found at i:81740183 original size:50 final size:50
Alignment explanation
Indices: 81740128--81740228 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
81740118 TGTTTGTCTA
* *
81740128 TTCATCCGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
1 TTCATCCAGGCAGTAAGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
*
81740178 TTCATCTAGGCAGTAAGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
1 TTCATCCAGGCAGTAAGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
81740228 T
1 T
81740229 GGTCGGGATT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.34
Consensus pattern (50 bp):
TTCATCCAGGCAGTAAGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
Found at i:81747201 original size:17 final size:18
Alignment explanation
Indices: 81747179--81747214 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
81747169 GCAATTTTGT
*
81747179 AAAAATTTCA-AAAATGA
1 AAAAATTGCATAAAATGA
81747196 AAAAATTGCATAAAATGA
1 AAAAATTGCATAAAATGA
81747214 A
1 A
81747215 TTTTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (18 bp):
AAAAATTGCATAAAATGA
Found at i:81747338 original size:39 final size:39
Alignment explanation
Indices: 81747284--81747361 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81747274 AAAATTGAGG
81747284 AAAATAAAAAATTATCAAAATGCCCCTAAATCTTGGTGT
1 AAAATAAAAAATTATCAAAATGCCCCTAAATCTTGGTGT
81747323 AAAATAAAAAATTATCAAAATGCCCCTAAATCTTGGTGT
1 AAAATAAAAAATTATCAAAATGCCCCTAAATCTTGGTGT
81747362 TTCTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (39 bp):
AAAATAAAAAATTATCAAAATGCCCCTAAATCTTGGTGT
Found at i:81755663 original size:26 final size:26
Alignment explanation
Indices: 81755634--81755717 Score: 107
Period size: 26 Copynumber: 3.2 Consensus size: 26
81755624 CCAACGCACC
81755634 AATATCGCAGCAAATG-TGCCAGTAAT
1 AATATCGCAGCAAA-GCTGCCAGTAAT
* *
81755660 AATATCGCAACAAAGCTGCCAGTAAC
1 AATATCGCAGCAAAGCTGCCAGTAAT
* * *
81755686 AGTAACGCAGCAGAGCTGCCAGTAAT
1 AATATCGCAGCAAAGCTGCCAGTAAT
81755712 AATATC
1 AATATC
81755718 AGTATATGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (26 bp):
AATATCGCAGCAAAGCTGCCAGTAAT
Found at i:81755818 original size:20 final size:20
Alignment explanation
Indices: 81755727--81755823 Score: 104
Period size: 20 Copynumber: 4.8 Consensus size: 20
81755717 CAGTATATGA
*
81755727 CACAAAGCCATGAGTAGCGG
1 CACAAAGCCATCAGTAGCGG
* * *
81755747 CACGAAGCCGTCAGTAGCGA
1 CACAAAGCCATCAGTAGCGG
* * *
81755767 CACAAAGCCATTAATAGTGG
1 CACAAAGCCATCAGTAGCGG
* *
81755787 CCCAAAGACATCAGTAGCGG
1 CACAAAGCCATCAGTAGCGG
*
81755807 CATAAAGCCATCAGTAG
1 CACAAAGCCATCAGTAG
81755824 GTCCACAGTT
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (20 bp):
CACAAAGCCATCAGTAGCGG
Found at i:81759843 original size:24 final size:24
Alignment explanation
Indices: 81759786--81759843 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81759776 TAAATGAGTC
* *
81759786 ATAAACAAGTCAATAAACAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
*
81759810 ATAAACGAGCCAATAAATAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
* *
81759834 TTAAATGAGC
1 ATAAACGAGC
81759844 TTGTTCGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (24 bp):
ATAAACGAGCCAATAAACAAGCTT
Found at i:81767625 original size:30 final size:30
Alignment explanation
Indices: 81767589--81767648 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81767579 CGAAATATCG
*
81767589 GTCATAAGCCCAATC-CTATCTGCCCCATCA
1 GTCATAAACCCAATCTC-ATCTGCCCCATCA
*
81767619 GTCATAAACTCAATCTCATCTGCCCCATCA
1 GTCATAAACCCAATCTCATCTGCCCCATCA
81767649 TTATCTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.38, G:0.08, T:0.25
Consensus pattern (30 bp):
GTCATAAACCCAATCTCATCTGCCCCATCA
Found at i:81780363 original size:11 final size:11
Alignment explanation
Indices: 81780349--81780396 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
81780339 TTCGATTTGT
81780349 TTTTCTTTTTA
1 TTTTCTTTTTA
81780360 TTTTCTTTTTA
1 TTTTCTTTTTA
81780371 TTTT-TGTCTTTA
1 TTTTCT-T-TTTA
*
81780383 TTTATCATTTTA
1 TTT-TCTTTTTA
81780395 TT
1 TT
81780397 AAAAGACTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
10 1 0.03
11 16 0.50
12 13 0.41
13 2 0.06
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTTCTTTTTA
Found at i:81780375 original size:12 final size:12
Alignment explanation
Indices: 81780332--81780396 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 12
81780322 TTTGAGTCCA
**
81780332 TTTATTTTTCGA
1 TTTATTTTTCTT
*
81780344 TTTGTTTTTCTT
1 TTTATTTTTCTT
81780356 TTTA-TTTTCTT
1 TTTATTTTTCTT
* *
81780367 TTTATTTTTGTC
1 TTTATTTTTCTT
* *
81780379 TTTATTTATCAT
1 TTTATTTTTCTT
81780391 TTTATT
1 TTTATT
81780397 AAAAGACTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
11 11 0.26
12 31 0.74
ACGTcount: A:0.12, C:0.08, G:0.05, T:0.75
Consensus pattern (12 bp):
TTTATTTTTCTT
Found at i:81786380 original size:11 final size:11
Alignment explanation
Indices: 81786366--81786415 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
81786356 TTTCAATATT
81786366 CTCTCAAATTC
1 CTCTCAAATTC
81786377 CTCTCAAA-T-
1 CTCTCAAATTC
* *
81786386 CTTTCAAATTT
1 CTCTCAAATTC
*
81786397 CTCTTAAATTC
1 CTCTCAAATTC
81786408 CTCTCAAA
1 CTCTCAAA
81786416 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 7 0.22
10 2 0.06
11 23 0.72
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:81786387 original size:31 final size:31
Alignment explanation
Indices: 81786352--81786415 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
81786342 TTCAATCTTC
81786352 AATCTTTC-AATATTCTCTCAAATTCCTCTCA
1 AATCTTTCAAAT-TTCTCTCAAATTCCTCTCA
*
81786383 AATCTTTCAAATTTCTCTTAAATTCCTCTCA
1 AATCTTTCAAATTTCTCTCAAATTCCTCTCA
81786414 AA
1 AA
81786416 ACTCTCGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (31 bp):
AATCTTTCAAATTTCTCTCAAATTCCTCTCA
Found at i:81787588 original size:7 final size:7
Alignment explanation
Indices: 81787576--81787602 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81787566 TAGTGGATTC
81787576 GTATTTA
1 GTATTTA
81787583 GTATTTA
1 GTATTTA
81787590 GTATTTA
1 GTATTTA
81787597 GTATTT
1 GTATTT
81787603 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:81788821 original size:116 final size:116
Alignment explanation
Indices: 81788628--81789241 Score: 1097
Period size: 116 Copynumber: 5.3 Consensus size: 116
81788618 TATTTGTACA
*
81788628 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
81788693 TGTAATTCACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
81788745 AACATTTTGAATATTTTTATATTATTTCATGTAATTA-ATAAAAGGTTATTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
81788809 TATAATTTAC-TTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
81788859 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
81788924 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
81788975 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
81789040 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * *
81789091 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* ** *
81789156 TATAATTTACTTTTATATTTTTAATAAAATAAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
81789207 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
81789242 AAAATATAAA
Statistics
Matches: 480, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
114 71 0.15
115 41 0.09
116 332 0.69
117 36 0.08
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:81792471 original size:126 final size:126
Alignment explanation
Indices: 81792238--81792771 Score: 837
Period size: 126 Copynumber: 4.3 Consensus size: 126
81792228 GCCCAAGTTA
*
81792238 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * **
81792303 TGCATCCTGCTTGAAACGTTTTTGACATTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * * *
81792364 TTTTAAAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
81792429 TGCATCCTACTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
81792490 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTG-TGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
81792554 TGCATCCTGCTTGAAGCATTTTT-ACACTATTTGCACAGACACGTCTTCTCAAAATT-TTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
81792613 TTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
81792678 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
81792739 TTTCAGAGA-C-CTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGT
81792772 AGAAGCTTTT
Statistics
Matches: 375, Mismatches: 29, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
123 59 0.16
124 82 0.22
125 59 0.16
126 175 0.47
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:81792685 original size:249 final size:251
Alignment explanation
Indices: 81792238--81792779 Score: 842
Period size: 249 Copynumber: 2.2 Consensus size: 251
81792228 GCCCAAGTTA
* *
81792238 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGA-CACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* * ** *
81792303 TGCATCCTGCTTGAAACGTTTTTGACATTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTT
65 TGCATCCTGCTTGAAACATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
81792368 AAAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
130 AAAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
81792433 TCCTACTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
195 TCCTACTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
*
81792490 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTG-TGACAA
1 TTTCAGAGAC-ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
81792554 TGCATCCTGCTTGAAGCATTTTT-ACACTATTTGCACAGACACGTCTTCTCAAAATT-TTTTTTC
65 TGCATCCTGCTTGAAACATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
* * * * * * *
81792617 AGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCA
130 AAAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
* *
81792682 TCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
195 TCCTACTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
*
81792739 TTTCAGAGAC-CTGTAGCAAAAGAGCGTCCACGTAGAAGCTT
1 TTTCAGAGACACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
81792780 TTTTAGATTA
Statistics
Matches: 268, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
247 30 0.11
249 127 0.47
250 30 0.11
251 27 0.10
252 54 0.20
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (251 bp):
TTTCAGAGACACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAAT
GCATCCTGCTTGAAACATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTCA
AAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCAT
CCTACTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:81792990 original size:96 final size:96
Alignment explanation
Indices: 81792891--81793063 Score: 233
Period size: 96 Copynumber: 1.8 Consensus size: 96
81792881 AATCTAATTT
* * * * *
81792891 TTTTTTAAATTTA-TGATTAATTTACTCAA-ATAACCCTAAACCCTAATTTATTTGATTTTTTCC
1 TTTTTTAAAATTAGTAATTAATTTAATCAACA-AACACTAAACCCTAATTTATTTAATTTTTTCC
81792954 TTAAAAACCATAAACACTAAACCATAATATAA
65 TTAAAAACCATAAACACTAAACCATAATATAA
* * *
81792986 TTTTTTAAAATTAGTAATTAATTTAATTAACAAACACTAAACCTTAATTTATTTAATTTTTTTCT
1 TTTTTTAAAATTAGTAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAATTTTTTCCT
* *
81793051 TTAAAACCCTAAA
66 TAAAAACCATAAA
81793064 ATTTAAAAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
95 12 0.18
96 53 0.80
97 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (96 bp):
TTTTTTAAAATTAGTAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAATTTTTTCCT
TAAAAACCATAAACACTAAACCATAATATAA
Found at i:81793070 original size:15 final size:15
Alignment explanation
Indices: 81793050--81793091 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
81793040 AATTTTTTTC
*
81793050 TTTAAAACCCTAAAA
1 TTTAAAAACCTAAAA
81793065 TTTAAAAACCTAAAA
1 TTTAAAAACCTAAAA
*
81793080 TTCTTAAAACCT
1 TT-TAAAAACCT
81793092 TAACCCTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (15 bp):
TTTAAAAACCTAAAA
Found at i:81793088 original size:16 final size:15
Alignment explanation
Indices: 81793050--81793091 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
81793040 AATTTTTTTC
81793050 TTTAAAACCCTAAAAT
1 TTTAAAA-CCTAAAAT
*
81793066 TTAAAAACCTAAAAT
1 TTTAAAACCTAAAAT
81793081 TCTTAAAACCT
1 T-TTAAAACCT
81793092 TAACCCTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (15 bp):
TTTAAAACCTAAAAT
Found at i:81794121 original size:16 final size:16
Alignment explanation
Indices: 81794099--81794164 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
81794089 TAAATTACTG
81794099 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* * *
81794115 GTTACAATTAC-ATTCT
1 ATTACAACT-CTATTCC
*
81794131 ATTACAACTCTATTTC
1 ATTACAACTCTATTCC
* * *
81794147 ATTATAGCTATATTCC
1 ATTACAACTCTATTCC
81794163 AT
1 AT
81794165 CAAATGAATC
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
15 1 0.03
16 35 0.95
17 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.03, T:0.42
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:81795469 original size:2 final size:2
Alignment explanation
Indices: 81795462--81795511 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
81795452 TTTTATACTA
* * *
81795462 AT AT AT AT AT AT AT AT AT AT GT AT AT AT CT AT AT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81795504 AT AT AT AT
1 AT AT AT AT
81795512 TATCAATCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81795849 original size:20 final size:20
Alignment explanation
Indices: 81795812--81795850 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81795802 GTATGTATAT
*
81795812 ATATATATATTTCTTTATTC
1 ATATATATATTTCATTATTC
81795832 ATATAT-TATTATCATTATT
1 ATATATATATT-TCATTATT
81795851 TTCCACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATATATTTCATTATTC
Found at i:81798407 original size:19 final size:19
Alignment explanation
Indices: 81798385--81798449 Score: 96
Period size: 19 Copynumber: 3.4 Consensus size: 19
81798375 CTTTCTTTCT
* *
81798385 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-TA
81798404 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATTA
81798423 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATTA
81798442 TTTGCATT
1 TTTGCATT
81798450 AGACTTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 36 0.84
20 7 0.16
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (19 bp):
TTTGCATTGCATTGCATTA
Found at i:81798413 original size:5 final size:5
Alignment explanation
Indices: 81798386--81798440 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
81798376 TTTCTTTCTT
*
81798386 TTGCA TT-CA TTTCA -TGCA TTTGCA TTGCA TTGCA TT--A TTTGCA TTGCA
1 TTGCA TTGCA TTGCA TTGCA -TTGCA TTGCA TTGCA TTGCA -TTGCA TTGCA
81798434 TTGCA TT
1 TTGCA TT
81798441 ATTTGCATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
3 1 0.02
4 9 0.21
5 28 0.65
6 5 0.12
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (5 bp):
TTGCA
Found at i:81803029 original size:64 final size:64
Alignment explanation
Indices: 81802936--81803063 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
81802926 ACATTTCTGC
* * * *
81802936 ACATCTAGTAAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATA
1 ACATCTAGTAAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
* * *
81803000 ACATTTAGTTAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGGCATAAACATA
1 ACATCTAGTAAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
81803064 GATACATGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (64 bp):
ACATCTAGTAAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
Found at i:81803279 original size:87 final size:87
Alignment explanation
Indices: 81803133--81803335 Score: 268
Period size: 87 Copynumber: 2.3 Consensus size: 87
81803123 GAATTCAAAG
* * *
81803133 CCTTATCTCCCTAAGAAGTAGGGTAACAGGCTAAATTTAAAGATCTTAACCCCTTAAGCAGTAGG
1 CCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAAATTTAAAGATCTTAACCCCTTAAGCAATAGG
*
81803198 GAAACAGATCGAAGACGA-AGGT
66 GAAACAGATCGAAGACGACA-GA
* * **
81803220 CCTTAACTTCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGTCTCCC-TAAGCAATAG
1 CCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAAATTTAAAGATCTTAAC-CCCTTAAGCAATAG
**
81803284 GGAAACAGATCGAAGGTGACAGA
65 GGAAACAGATCGAAGACGACAGA
81803307 CCTTAAAC-CCCTAAGCAGTAGGGTAACAG
1 CCTT-AACTCCCTAAGCAGTAGGGTAACAG
81803336 TGTAATGGCG
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
87 95 0.93
88 7 0.07
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (87 bp):
CCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAAATTTAAAGATCTTAACCCCTTAAGCAATAGG
GAAACAGATCGAAGACGACAGA
Found at i:81806367 original size:43 final size:43
Alignment explanation
Indices: 81806312--81806593 Score: 131
Period size: 44 Copynumber: 6.5 Consensus size: 43
81806302 GGCCTTAACC
* *
81806312 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGATAAATTTACAGATCTTATCT
* * * *
81806355 CCCTAAGCAGTAGTGG-AGCA-AATCAAA--GAC-GAATGGCCTTAAAC-
1 CCCTAAGCAGTAG-GGTAACAGGAT-AAATTTACAG-AT---CTT-ATCT
* * *
81806399 CCCTAACCAGTAGGGTAACAGGCTAAATTTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGATAAATTTACAGATCTTATCT
* * * *
81806442 CCCTAAGCAGT-GGTGGAACA-GATCAAAGGTTA-AGAGCTTTAAAC-
1 CCCTAAGCAGTAGG-GTAACAGGAT-AAA-TTTACAGATC-TT-ATCT
* * * * *
81806486 CTCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGATAAATTTACAGATCTTATCT
* * *
81806529 CCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGATAGATCTTAATC-
1 CCCTAAGCAGTAGGGTAACAGGAT--AA-ATTTACAGATCTT-ATCT
*
81806573 CCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGTAACAG
81806594 ATCGAAGGTG
Statistics
Matches: 179, Mismatches: 33, Indels: 52
0.68 0.12 0.20
Matches are distributed among these distances:
40 1 0.01
41 4 0.02
42 11 0.06
43 69 0.39
44 79 0.44
45 10 0.06
46 4 0.02
47 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGATAAATTTACAGATCTTATCT
Found at i:81806402 original size:87 final size:87
Alignment explanation
Indices: 81806253--81806786 Score: 501
Period size: 87 Copynumber: 6.1 Consensus size: 87
81806243 ACAGGTTGAA
* * * * * *
81806253 TTACAGATCTTGTCTCCCTAAGCAGTA-GTAGAGCAGATCGAAGACGAAGGGCCTTAACCCCCTA
1 TTACAGATCTTGACTCCCTAAGCAGTAGGGA-AACAGATCAAAGACGAATGGCCTTAAACCCCTA
81806317 AGCAGTAGGGTAACAGGCTAAAT
65 AGCAGTAGGGTAACAGGCTAAAT
* * *
81806340 TTACAGATCTTGTCTCCCTAAGCAGTAGTGG-AGCAAATCAAAGACGAATGGCCTTAAACCCCTA
1 TTACAGATCTTGACTCCCTAAGCAGTAG-GGAAACAGATCAAAGACGAATGGCCTTAAACCCCTA
*
81806404 ACCAGTAGGGTAACAGGCTAAAT
65 AGCAGTAGGGTAACAGGCTAAAT
* * *** * *
81806427 TTACAGATCTTGTCTCCCTAAGCAGT-GGTGGAACAGATCAAAGGTTAA-GAGCTTTAAACCTCT
1 TTACAGATCTTGACTCCCTAAGCAGTAGG-GAAACAGATCAAAGACGAATG-GCCTTAAACCCCT
* *
81806490 AAGCAGTAGGGTAACAGGTTGAAT
64 AAGCAGTAGGGTAACAGGCTAAAT
* * * * ** *
81806514 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATAGATCTTAATCCCCTA
1 TTACAGATCTTGACTCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAT-GGCCTTAAACCCCTA
* * * **
81806578 AGCAGTAGGGAAACAGATCGAAGG
65 AGCAGTAGGGTAACAG-GCTAAAT
* ** * * * *
81806602 TGATGGATCTTAAC-CCTTAAGCAGTAGGGAAACAGATCAAAGGCG-ATGGGCCTTAAACCCTTA
1 TTACAGATCTTGACTCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAT-GGCCTTAAACCCCTA
* * *
81806665 AGCAGTAGAGTAACAAGCTGAA-
65 AGCAGTAGGGTAACAGGCTAAAT
* * * *
81806687 TTATAGATCTTAACCCCCTAAGCACTAGGGAAACAGATCAAAGAC-AATGTGCCTTAAACCCCTA
1 TTACAGATCTTGACTCCCTAAGCAGTAGGGAAACAGATCAAAGACGAATG-GCCTTAAACCCCTA
* *
81806751 AGCAGTAGGGTAACAGACTGAAAA
65 AGCAGTAGGGTAACAGGCT-AAAT
81806775 TTACAGATCTTG
1 TTACAGATCTTG
81806787 CCTTCCTGAA
Statistics
Matches: 367, Mismatches: 66, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
85 14 0.04
86 64 0.17
87 263 0.72
88 25 0.07
89 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (87 bp):
TTACAGATCTTGACTCCCTAAGCAGTAGGGAAACAGATCAAAGACGAATGGCCTTAAACCCCTAA
GCAGTAGGGTAACAGGCTAAAT
Found at i:81806578 original size:174 final size:172
Alignment explanation
Indices: 81806251--81806786 Score: 560
Period size: 174 Copynumber: 3.1 Consensus size: 172
81806241 AAACAGGTTG
* * * * * *
81806251 AATTACAGATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGAAGGGCCTTAACCCCCT
1 AATTACAGATCTTGTCTCCCTAAGCAGTGGTGGAACAGATCAAAGGCGAAGGGCCTTAA-ACCCT
* ** * * *
81806316 AAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGTCTCCCTAAGCAGTAGTGG-AGCAAATCA
65 AAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCA
* * * *
81806380 AAGACGAATGGCCTTAAACCCCTAACCAGTAGGGTAACAGGCTAA
129 AAGACG-ATAGTCTTAAACCCCTAAGCAGTAGGGTAACAGACTAA
* ** * *
81806425 ATTTACAGATCTTGTCTCCCTAAGCAGTGGTGGAACAGATCAAAGGTTAAGAGCTTTAAACCTCT
1 AATTACAGATCTTGTCTCCCTAAGCAGTGGTGGAACAGATCAAAGGCGAAGGGCCTTAAACC-CT
* *
81806490 AAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
65 AAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAA
* * * *
81806555 AGATGATAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAA
130 AGACGATAG-TCTTAAACCCCTAAGCAGTAGGGTAACAGA-CTAA
** * ** ** * * *
81806600 GGTGATGGATCTTAAC-CCTTAAGCAGTAGG-GAAACAGATCAAAGGCGATGGGCCTTAAACCCT
1 AATTACAGATCTTGTCTCCCTAAGCAGT-GGTGGAACAGATCAAAGGCGAAGGGCCTTAAACCC-
* * * *
81806663 TAAGCAGTAGAGTAACAAGCTGAA-TTATAGATCTTAACCCCCTAAGCACTAGGGAAACAGATCA
64 TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCA
*
81806727 AAGACAAT-GTGCCTTAAACCCCTAAGCAGTAGGGTAACAGACTGAA
129 AAGACGATAGT--CTTAAACCCCTAAGCAGTAGGGTAACAGACT-AA
81806773 AATTACAGATCTTG
1 AATTACAGATCTTG
81806787 CCTTCCTGAA
Statistics
Matches: 295, Mismatches: 58, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
171 1 0.00
172 2 0.01
173 88 0.30
174 190 0.64
175 14 0.05
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (172 bp):
AATTACAGATCTTGTCTCCCTAAGCAGTGGTGGAACAGATCAAAGGCGAAGGGCCTTAAACCCTA
AGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAA
GACGATAGTCTTAAACCCCTAAGCAGTAGGGTAACAGACTAA
Found at i:81806581 original size:44 final size:44
Alignment explanation
Indices: 81806480--81806767 Score: 239
Period size: 44 Copynumber: 6.6 Consensus size: 44
81806470 GTTAAGAGCT
* * * * * * *
81806480 TTAAACCTCTAAGCAGTAGGGTAACAGGTTGAA-TTTACAGATC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
*
81806523 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
* * *
81806567 TTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGATC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
* * ** * **
81806611 TT-AACCCTTAAGCAGTAGGGAAACAGATCAAAGGCGATGGGCC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
* * * * *
81806654 TTAAACCCTTAAGCAGTAGAGTAACA-AGCTG-A-ATTATAGATC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGATC
* * * **
81806696 TTAACCCCCTAAGCACTAGGGAAACAGATCAAAGACAAT-G-TGCC
1 TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT--C
*
81806740 TTAAACCCCTAAGCAGTAGGGTAACAGA
1 TTAAACCCCTAAGCAGTAGGGAAACAGA
81806768 CTGAAAATTA
Statistics
Matches: 198, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.13
43 72 0.36
44 100 0.51
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (44 bp):
TTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATC
Found at i:81806637 original size:43 final size:44
Alignment explanation
Indices: 81806442--81806725 Score: 240
Period size: 44 Copynumber: 6.5 Consensus size: 44
81806432 GATCTTGTCT
* * * * *
81806442 CCCTAAGCAGT-GGTGGAACAGATCAAAGGTTA-AGAGCTTTAAAC
1 CCCTAAGCAGTAGG-GAAACAGATCGAAGGTGATAGATC-TTAACC
* * * * * * *
81806486 CTCTAAGCAGTAGGGTAACAGGTTGAA-TTTACAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATAGATCTTAACC
* *
81806529 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGATCTTAATC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATAGATCTTAACC
*
81806573 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGATCTTAA-C
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATAGATCTTAACC
* * * * ** *
81806616 CCTTAAGCAGTAGGGAAACAGATCAAAGGCGATGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATAGATCTTAACC
* * * * *
81806660 CCTTAAGCAGTAGAGTAACA-AGCTGAA--TTATAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATC-GAAGGTGATAGATCTTAACC
*
81806702 CCCTAAGCACTAGGGAAACAGATC
1 CCCTAAGCAGTAGGGAAACAGATC
81806726 AAAGACAATG
Statistics
Matches: 196, Mismatches: 38, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
42 25 0.13
43 73 0.37
44 96 0.49
45 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATAGATCTTAACC
Found at i:81806916 original size:132 final size:132
Alignment explanation
Indices: 81806746--81807192 Score: 691
Period size: 132 Copynumber: 3.4 Consensus size: 132
81806736 TGCCTTAAAC
** * * * *
81806746 CCCTAAGCAGTAG-GGTAACAGACTGAAAATTACAGATCTTGCCTTCCTGAAGTTGCAGTGGAGC
1 CCCTAAGCAGTAGTGG-AGTAGGCTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGC
** * * *
81806810 AGATTAAAGAAGGCAAATCTTGCCTTCTTAAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTA
65 AGATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTA
81806875 TCT
130 TCT
81806878 CCCTAAGCAGTAGTGGAGTAGGCTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
* * *
81806943 GATCGAAGACGGCGAATCTTGCATTCCTGAAGTTACAGTGAAGTAGATTTAAGCCACCATCCTAT
66 GATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
81807008 CT
131 CT
* *
81807010 CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
* *
81807075 GATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCATCCTAT
66 GATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
81807140 CT
131 CT
*
81807142 CCCTAAGCAGTAGTGGAGTAGGCT-AAAGATTGCAGATCTTGTCTCCCTGAA
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAA-ATTGCAGATCTTGCCTCCCTGAA
81807193 TTTACAGTAG
Statistics
Matches: 289, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 2 0.01
132 285 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (132 bp):
CCCTAAGCAGTAGTGGAGTAGGCTGAAAATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
GATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
CT
Found at i:81806962 original size:45 final size:45
Alignment explanation
Indices: 81806913--81807119 Score: 136
Period size: 45 Copynumber: 4.7 Consensus size: 45
81806903 AAAATTGCAG
81806913 ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGA
* * ** * * ** ** *
81806958 ATCTTGCATTCCTGAAGTTACAGTGAAGTAGATTTAAG-CCAC-C
1 ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** * * ** *
81807001 ATCCTATCTCCCT-AAGCAGTAGTGGAGTAG-GCTGAAGATTG-TA
1 ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATC-GAAGACGGCGA
*
81807044 GATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGGCGA
1 -ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGA
* * *
81807090 ATCTTGCCTTCCTGAAGTTGCAGTGAAGCA
1 ATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
81807120 AATTTAAGCC
Statistics
Matches: 114, Mismatches: 41, Indels: 14
0.67 0.24 0.08
Matches are distributed among these distances:
42 15 0.13
43 8 0.07
44 12 0.11
45 77 0.68
46 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
ATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGA
Found at i:81808556 original size:21 final size:22
Alignment explanation
Indices: 81808524--81808565 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
81808514 GTTTATTTTA
81808524 TTATTCTATATTAAATTATTTC
1 TTATTCTATATTAAATTATTTC
*
81808546 TTATT-TATATTAAGTTATTT
1 TTATTCTATATTAAATTATTT
81808566 TATTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTCTATATTAAATTATTTC
Found at i:81808757 original size:2 final size:2
Alignment explanation
Indices: 81808750--81808779 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81808740 TTTTATACTA
81808750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81808780 TATCAATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81809110 original size:2 final size:2
Alignment explanation
Indices: 81809066--81809094 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81809056 ATGTTCTTGG
81809066 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81809095 TTCTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81809122 original size:20 final size:20
Alignment explanation
Indices: 81809085--81809123 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81809075 ATATATATAT
*
81809085 ATATATATATTTCTTTATTC
1 ATATATATATTTCATTATTC
81809105 ATATAT-TATTATCATTATT
1 ATATATATATT-TCATTATT
81809124 TTCCACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATATATTTCATTATTC
Found at i:81809297 original size:26 final size:26
Alignment explanation
Indices: 81809267--81809318 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81809257 ATTATGTATA
*
81809267 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
81809293 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
81809319 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:81809431 original size:2 final size:2
Alignment explanation
Indices: 81809424--81809462 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
81809414 TTATATGTTT
81809424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81809463 GTTCCCTACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81809545 original size:15 final size:15
Alignment explanation
Indices: 81809525--81809556 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81809515 TTATTATCGT
81809525 TTTATACTATTATTA
1 TTTATACTATTATTA
*
81809540 TTTATATTATTATTA
1 TTTATACTATTATTA
81809555 TT
1 TT
81809557 ATTATCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATACTATTATTA
Found at i:81810359 original size:49 final size:49
Alignment explanation
Indices: 81810305--81810409 Score: 201
Period size: 49 Copynumber: 2.1 Consensus size: 49
81810295 CAACATTAAT
81810305 ACAAAGAGGGATCGTATTTTAAATTCTTTCAAGTTTTCAAATCTTCGAC
1 ACAAAGAGGGATCGTATTTTAAATTCTTTCAAGTTTTCAAATCTTCGAC
81810354 ACAAAGAGGGATCGTATTTTAAATTCTTTCAAGTTTTCAAATCTTCGAC
1 ACAAAGAGGGATCGTATTTTAAATTCTTTCAAGTTTTCAAATCTTCGAC
*
81810403 ACTAAGA
1 ACAAAGA
81810410 CACTAATTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 55 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.35
Consensus pattern (49 bp):
ACAAAGAGGGATCGTATTTTAAATTCTTTCAAGTTTTCAAATCTTCGAC
Found at i:81812390 original size:16 final size:17
Alignment explanation
Indices: 81812364--81812405 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
81812354 CTTTAGAACG
* *
81812364 TTTTTAGAATTTTTATT
1 TTTTTAGAATTTATAAT
81812381 TTTTTA-AATTTATAAT
1 TTTTTAGAATTTATAAT
81812397 TTTTTAGAA
1 TTTTTAGAA
81812406 AATATAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTTAGAATTTATAAT
Found at i:81813420 original size:26 final size:26
Alignment explanation
Indices: 81813369--81813421 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
81813359 AAGTAAAAAC
* **
81813369 AGAAACGTTAAAAGAATTTTTTTTAT
1 AGAAACATTAAAAGAATTTTAATTAT
81813395 AGAAACATTAAAAGAATTTTAATTAT
1 AGAAACATTAAAAGAATTTTAATTAT
81813421 A
1 A
81813422 TATGATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (26 bp):
AGAAACATTAAAAGAATTTTAATTAT
Found at i:81815633 original size:43 final size:43
Alignment explanation
Indices: 81815526--81815819 Score: 261
Period size: 43 Copynumber: 6.9 Consensus size: 43
81815516 TTATGTAAAA
* * * ** ** *
81815526 AAACACCGTTAAAGAACATGACATTTAGCGGCATTTTTGAGA-
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
* * *
81815568 AAGCGCCGCTAAAAAACTTGACCTTTAGCGGCGCTTTCCATAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
** * * *
81815611 AAAATCCACTAAAGAACATGACCTTTAGCGGCGCTTCCCGTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
* * * * *
81815654 AAACGTCGCTAAAGAACATGACCTTTAGCGGTGCATACCAAAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
* ** * *
81815697 AAACGCCGCTAAAGAACATGACCTTTGGCGGTTCTTTTCACAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
* * * **
81815740 AAACGCCGCTAAAGAACGTGATCTTTGGCGGTACTTTTCTCA-A-
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTC-CATAC
*
81815783 AAACGCCGCTAAAGAACATGACCTATAGCGGCGCTTT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTT
81815820 TCTAAAAAAC
Statistics
Matches: 204, Mismatches: 45, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
42 34 0.17
43 164 0.80
44 4 0.02
45 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCATAC
Found at i:81815721 original size:129 final size:129
Alignment explanation
Indices: 81815571--81815813 Score: 290
Period size: 129 Copynumber: 1.9 Consensus size: 129
81815561 TTTGAGAAAG
* * *
81815571 CGCCGCTAAAAAACTTGACCTTTAGCGGCGCTTTCCATACAAAATCCACTAAAGAACATGACCTT
1 CGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTCCACACAAAAGCCACTAAAGAACATGACCTT
* * * *
81815636 TAGCGGCGCTTCCCGT-ACAAACGTCGCTAAAGAACATGACCTTTAGCGGTGCATACCAAACAAA
66 TAGCGGCACTTCCC-TCAAAAACGCCGCTAAAGAACATGACCTATAGCGGTGCATACCAAACAAA
* * ** * * * * *
81815700 CGCCGCTAAAGAACATGACCTTTGGCGGTTCTTTTCACACAAACGCCGCTAAAGAACGTGATCTT
1 CGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTCCACACAAAAGCCACTAAAGAACATGACCTT
* * **
81815765 TGGCGGTACTTTTCTCAAAAACGCCGCTAAAGAACATGACCTATAGCGG
66 TAGCGGCACTTCCCTCAAAAACGCCGCTAAAGAACATGACCTATAGCGG
81815814 CGCTTTTCTA
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
128 1 0.01
129 92 0.99
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (129 bp):
CGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTCCACACAAAAGCCACTAAAGAACATGACCTT
TAGCGGCACTTCCCTCAAAAACGCCGCTAAAGAACATGACCTATAGCGGTGCATACCAAACAAA
Found at i:81816569 original size:13 final size:14
Alignment explanation
Indices: 81816535--81816571 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
81816525 CGATGAATTT
81816535 ACCATTATAATTAA
1 ACCATTATAATTAA
*
81816549 ACCATTATGATTAA
1 ACCATTATAATTAA
81816563 A-CATTATAA
1 ACCATTATAA
81816572 ATATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.35
Consensus pattern (14 bp):
ACCATTATAATTAA
Found at i:81821599 original size:9 final size:9
Alignment explanation
Indices: 81821585--81821618 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
81821575 CGTAGGTTAA
81821585 GTAAGTTTT
1 GTAAGTTTT
81821594 GTAAGTTTT
1 GTAAGTTTT
*
81821603 GTAAGTTAT
1 GTAAGTTTT
81821612 GTAAGTT
1 GTAAGTT
81821619 ATGATATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (9 bp):
GTAAGTTTT
Found at i:81821692 original size:43 final size:43
Alignment explanation
Indices: 81821635--81821924 Score: 405
Period size: 43 Copynumber: 6.9 Consensus size: 43
81821625 TGATATACAT
* **
81821635 TTATGTAAGCTATGTAAGTTATGATATGATATATAGCTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
81821678 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
81821721 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
* * *
81821764 TTATGTAAGTTTTGTAAGTAATGATATGGTATATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
*
81821807 TTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
* * *
81821850 TTATGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TATATG-A
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
* * * *
81821888 -TATAT-ATTTATGTAAATTATTATATGATATATATTTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTA
81821925 ACATTAAGAT
Statistics
Matches: 226, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
36 12 0.05
37 7 0.03
38 2 0.01
39 8 0.04
40 6 0.03
41 1 0.00
42 3 0.01
43 187 0.83
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
Found at i:81821745 original size:86 final size:86
Alignment explanation
Indices: 81821593--81821924 Score: 419
Period size: 86 Copynumber: 3.9 Consensus size: 86
81821583 AAGTAAGTTT
* * * ** *
81821593 TGTAAGTTTTGTAAGTTATG-TAAGTTATGATATGATATACATTTATGTAAGCTATGTAAGTTAT
1 TGTAAGTTTTGTAAGTTATGATATGATAT-ATAT-TTATGTA-TTATGTAAGTTATGTAAGTTAT
**
81821657 GATATGATATATAGCTATGTATTA
63 GATATGATATATATTTATGTATTA
*
81821681 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
81821746 ATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTA
* * *
81821767 TGTAAGTTTTGTAAGTAATGATATGGTATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
81821832 ATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTA
* * * * * *
81821853 TGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TATATG-A-TATAT-ATTTATGTAAATTATTAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
81821911 ATGATATATATTTA
66 ATGATATATATTTA
81821925 ACATTAAGAT
Statistics
Matches: 222, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
79 28 0.13
80 4 0.02
81 1 0.00
82 5 0.02
83 3 0.01
84 1 0.00
85 3 0.01
86 144 0.65
87 4 0.02
88 23 0.10
89 6 0.03
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (86 bp):
TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
ATGATATATATTTATGTATTA
Found at i:81821885 original size:129 final size:131
Alignment explanation
Indices: 81821593--81821902 Score: 455
Period size: 129 Copynumber: 2.4 Consensus size: 131
81821583 AAGTAAGTTT
* *
81821593 TGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATACATTTATGTAAGCTATGTAAGTTATG
1 TGTAAGTTTTGTAAGTTATGTAAGTTATTATATGATATACATTTATGTAAGCTATGTAAGTAATG
81821658 ATATGATATATAGCTATGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATT
66 ATATGATATATAGCTATGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATT
81821723 A
131 A
* * * * ** * *
81821724 TGTAAGTTATGTAAGTTATGATATGATA-TATAT-TTATGTA-TTATGTAAGTTTTGTAAGTAAT
1 TGTAAGTTTTGTAAGTTATG-TAAGTTATTATATGATATACATTTATGTAAGCTATGTAAGTAAT
* ** *
81821786 GATATGGTATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTAT
65 GATATGATATATAGCTATGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAT
81821851 TA
130 TA
*
81821853 TGTAAGTTTTGTAAGTTATGTAAGTTATTATATGATATATATTTATGTAA
1 TGTAAGTTTTGTAAGTTATGTAAGTTATTATATGATATACATTTATGTAA
81821903 ATTATTATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
128 5 0.03
129 106 0.68
130 9 0.06
131 31 0.20
132 5 0.03
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (131 bp):
TGTAAGTTTTGTAAGTTATGTAAGTTATTATATGATATACATTTATGTAAGCTATGTAAGTAATG
ATATGATATATAGCTATGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATT
A
Found at i:81821898 original size:27 final size:27
Alignment explanation
Indices: 81821819--81821924 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
81821809 ATGTAAGTTT
*
81821819 TGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
* * * *
81821846 TGT-A-TTATGTA-A-GTTTTGTAAGTTA
1 TGTAAGTTAT-TATATGATATAT-ATTTA
81821871 TGTAAGTTATTATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
*
81821898 TGTAAATTATTATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
81821925 ACATTAAGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
24 4 0.06
25 12 0.19
26 5 0.08
27 38 0.60
28 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (27 bp):
TGTAAGTTATTATATGATATATATTTA
Found at i:81822229 original size:165 final size:164
Alignment explanation
Indices: 81821952--81822253 Score: 550
Period size: 165 Copynumber: 1.8 Consensus size: 164
81821942 ATTTTCCTTT
* * *
81821952 AAAACAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAACTTATGTAATTTAAAAAATT
1 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
81822017 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAGAAATAAT
66 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAA-AAATAAT
81822082 AAAAATAAAATTTGACGGTGTGGAAAATCACATGG
130 AAAAATAAAATTTGACGGTGTGGAAAATCACATGG
81822117 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
1 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
* *
81822182 GTGTATAAAAATTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAAATATTA
66 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAAATAATA
81822247 AAAATAA
131 AAAATAA
81822254 GATTGAACCT
Statistics
Matches: 132, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
164 14 0.11
165 118 0.89
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (164 bp):
AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAAATAATA
AAAATAAAATTTGACGGTGTGGAAAATCACATGG
Found at i:81822291 original size:14 final size:14
Alignment explanation
Indices: 81822272--81822302 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81822262 CTTGTTTTAA
*
81822272 TATGGTAATGGCAT
1 TATGGTAATGACAT
81822286 TATGGTAATGACAT
1 TATGGTAATGACAT
81822300 TAT
1 TAT
81822303 CGACTAACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (14 bp):
TATGGTAATGACAT
Found at i:81822562 original size:24 final size:24
Alignment explanation
Indices: 81822534--81822580 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81822524 TTAACTTAAA
* *
81822534 TGATAAAATGGACGATAATATTTT
1 TGATAAAACGGACGAGAATATTTT
81822558 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGAGAATATTT
81822581 CAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.06, G:0.19, T:0.32
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTT
Found at i:81823774 original size:35 final size:35
Alignment explanation
Indices: 81823735--81823811 Score: 127
Period size: 35 Copynumber: 2.2 Consensus size: 35
81823725 CTAACCATAA
* *
81823735 TTTAAGAGAGATAATTATGAATTCTGAAAAAATAT
1 TTTAACAGAAATAATTATGAATTCTGAAAAAATAT
*
81823770 TTTAACATAAATAATTATGAATTCTGAAAAAATAT
1 TTTAACAGAAATAATTATGAATTCTGAAAAAATAT
81823805 TTTAACA
1 TTTAACA
81823812 TAAACCTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36
Consensus pattern (35 bp):
TTTAACAGAAATAATTATGAATTCTGAAAAAATAT
Found at i:81823812 original size:35 final size:35
Alignment explanation
Indices: 81823745--81823815 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
81823735 TTTAAGAGAG
81823745 ATAATTATGAATTCTGAAAAAATATTTTAACATAA
1 ATAATTATGAATTCTGAAAAAATATTTTAACATAA
81823780 ATAATTATGAATTCTGAAAAAATATTTTAACATAA
1 ATAATTATGAATTCTGAAAAAATATTTTAACATAA
81823815 A
1 A
81823816 CCTAAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.37
Consensus pattern (35 bp):
ATAATTATGAATTCTGAAAAAATATTTTAACATAA
Found at i:81823973 original size:15 final size:15
Alignment explanation
Indices: 81823953--81824035 Score: 55
Period size: 14 Copynumber: 5.6 Consensus size: 15
81823943 ATTTATTATC
81823953 AGGGTTTAAAGTTTT
1 AGGGTTTAAAGTTTT
* *
81823968 AGGGTTT-ATGGTTT
1 AGGGTTTAAAGTTTT
* *
81823982 GGGGTTTAAAAGTTTA
1 AGGGTTT-AAAGTTTT
*
81823998 AGGATTT--AGTTTTT
1 AGGGTTTAAAG-TTTT
** *
81824012 ATAGTTTAAGGTTTT
1 AGGGTTTAAAGTTTT
81824027 AGGGTTTAA
1 AGGGTTTAA
81824036 GGGTTTATAG
Statistics
Matches: 48, Mismatches: 15, Indels: 10
0.66 0.21 0.14
Matches are distributed among these distances:
13 2 0.04
14 18 0.38
15 18 0.38
16 10 0.21
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (15 bp):
AGGGTTTAAAGTTTT
Found at i:81823975 original size:7 final size:7
Alignment explanation
Indices: 81823965--81824136 Score: 62
Period size: 7 Copynumber: 24.0 Consensus size: 7
81823955 GGTTTAAAGT
81823965 TTTAGGG
1 TTTAGGG
*
81823972 TTTATGG
1 TTTAGGG
*
81823979 TTTGGGG
1 TTTAGGG
**
81823986 TTTAAAAG
1 TTT-AGGG
*
81823994 TTTAAGGA
1 TTT-AGGG
**
81824002 TTTAGTT
1 TTTAGGG
**
81824009 TTTATAG
1 TTTAGGG
*
81824016 TTTAAGGT
1 TTT-AGGG
81824024 TTTAGGG
1 TTTAGGG
81824031 TTTAAGGG
1 TTT-AGGG
**
81824039 TTTATAG
1 TTTAGGG
*
81824046 TTCATGGG
1 TTTA-GGG
81824054 -TT-GGG
1 TTTAGGG
81824059 ATTTAGGG
1 -TTTAGGG
* *
81824067 GTTAGGC
1 TTTAGGG
**
81824074 TTTAGAT
1 TTTAGGG
81824081 TTTAGGG
1 TTTAGGG
81824088 TTTA-GG
1 TTTAGGG
*
81824094 TGTTAAGG
1 T-TTAGGG
81824102 TTTAGGG
1 TTTAGGG
* * *
81824109 ATTAAGC
1 TTTAGGG
*
81824116 TTTAGAG
1 TTTAGGG
81824123 TTTAGGG
1 TTTAGGG
81824130 TTTAGGG
1 TTTAGGG
81824137 GCCGAAATTA
Statistics
Matches: 116, Mismatches: 40, Indels: 18
0.67 0.23 0.10
Matches are distributed among these distances:
5 3 0.03
6 3 0.03
7 83 0.72
8 27 0.23
ACGTcount: A:0.22, C:0.02, G:0.33, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:81824034 original size:22 final size:22
Alignment explanation
Indices: 81823983--81824035 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
81823973 TTATGGTTTG
81823983 GGGTTTAAAAGTTTAAGGATTTA
1 GGGTTT-AAAGTTTAAGGATTTA
** * *
81824006 GTTTTTATAGTTTAAGGTTTTA
1 GGGTTTAAAGTTTAAGGATTTA
81824028 GGGTTTAA
1 GGGTTTAA
81824036 GGGTTTATAG
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (22 bp):
GGGTTTAAAGTTTAAGGATTTA
Found at i:81824036 original size:15 final size:15
Alignment explanation
Indices: 81823953--81824042 Score: 67
Period size: 15 Copynumber: 6.1 Consensus size: 15
81823943 ATTTATTATC
*
81823953 AGGGTTTAAAGTTTT
1 AGGGTTTAAGGTTTT
*
81823968 AGGGTTTATGG-TTT
1 AGGGTTTAAGGTTTT
* * *
81823982 GGGGTTTAAAAGTTTA
1 AGGGTTT-AAGGTTTT
* *
81823998 AGGATTT-AGTTTTT
1 AGGGTTTAAGGTTTT
**
81824012 ATAGTTTAAGGTTTT
1 AGGGTTTAAGGTTTT
*
81824027 AGGGTTTAAGGGTTT
1 AGGGTTTAAGGTTTT
81824042 A
1 A
81824043 TAGTTCATGG
Statistics
Matches: 54, Mismatches: 18, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
14 17 0.31
15 30 0.56
16 7 0.13
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (15 bp):
AGGGTTTAAGGTTTT
Found at i:81824085 original size:21 final size:21
Alignment explanation
Indices: 81824060--81824135 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
81824050 TGGGTTGGGA
* *
81824060 TTTAGGGGTTAGGCTTTAGAT
1 TTTAGGGTTTAGGCTTTAGAG
81824081 TTTAGGGTTTAGG-TGTTA-AGG
1 TTTAGGGTTTAGGCT-TTAGA-G
* *
81824102 TTTAGGGATTAAGCTTTAGAG
1 TTTAGGGTTTAGGCTTTAGAG
81824123 TTTAGGGTTTAGG
1 TTTAGGGTTTAGG
81824136 GGCCGAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 2 0.04
21 41 0.91
22 2 0.04
ACGTcount: A:0.21, C:0.03, G:0.34, T:0.42
Consensus pattern (21 bp):
TTTAGGGTTTAGGCTTTAGAG
Found at i:81825032 original size:40 final size:40
Alignment explanation
Indices: 81824976--81825067 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
81824966 TTTTTGCGAT
* *
81824976 TTTTTCCAAAAAGCACCGCTAACGGTTGAGCTATAGCGGCG
1 TTTTT-CAAAAAGCACCGCTAACGCTTGAGCTATAGCGACG
* *
81825017 TTTTTCAAAAAGCACCGCTAATGCTTGATCTATAGCGACG
1 TTTTTCAAAAAGCACCGCTAACGCTTGAGCTATAGCGACG
81825057 TTTTTCAAAAA
1 TTTTTCAAAAA
81825068 ATGCCACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (40 bp):
TTTTTCAAAAAGCACCGCTAACGCTTGAGCTATAGCGACG
Found at i:81825078 original size:40 final size:40
Alignment explanation
Indices: 81824976--81825080 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
81824966 TTTTTGCGAT
* * * * *
81824976 TTTTTCCAAAAAGCACCGCTAACGGTTGAGCTATAGCGGCG
1 TTTTT-CAAAAAACACCACTAATGCTTGAGCTATAGCGACG
* * *
81825017 TTTTTCAAAAAGCACCGCTAATGCTTGATCTATAGCGACG
1 TTTTTCAAAAAACACCACTAATGCTTGAGCTATAGCGACG
**
81825057 TTTTTCAAAAAATGCCACTAATGC
1 TTTTTCAAAAAACACCACTAATGC
81825081 CGCTAAAGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 51 0.91
41 5 0.09
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (40 bp):
TTTTTCAAAAAACACCACTAATGCTTGAGCTATAGCGACG
Found at i:81825196 original size:40 final size:40
Alignment explanation
Indices: 81825150--81825317 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
81825140 AAAAACGCCT
* *
81825150 CTAATGCTTGATCTCTAGCGGCGTTTTTAGAAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
***
81825190 CTAATGCTCGATCTATAGCTATGTTTTTAGAAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
*
81825230 CTAATGCTCGATCTATAGCCGCGTTTTTAGAAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
* *
81825270 CTAATGCTCGATCTATAGCGGTGTTTTTTTA-AAAAGTACCG
1 CTAATGCTCGATCTATAGCGGCG--TTTTTAGAAAAGTGCCG
81825311 CTAATGC
1 CTAATGC
81825318 CACTAAAGCT
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 93 0.81
41 16 0.14
42 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (40 bp):
CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
Found at i:81825447 original size:46 final size:44
Alignment explanation
Indices: 81825396--81825514 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 44
81825386 GGTCAACCAT
81825396 TAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTCAAAAA--GCCGCTAATGCTAATGCTCGATCTA
* * * * *
81825442 TAGCGGTGTTTTCCAAAAA---GC-ATTGTTAATGCTTGATCTA
1 TAGCGGCGTTTTTCAAAAAGCCGCTAATGCTAATGCTCGATCTA
*
81825482 TAGTGGCGTTTTTCAAAAATTGCCGCTAATGCT
1 TAGCGGCGTTTTTCAAAAA--GCCGCTAATGCT
81825515 CAATCTATAG
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
40 32 0.56
41 2 0.04
45 2 0.04
46 21 0.37
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (44 bp):
TAGCGGCGTTTTTCAAAAAGCCGCTAATGCTAATGCTCGATCTA
Found at i:81837070 original size:25 final size:26
Alignment explanation
Indices: 81837042--81837092 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81837032 CTTATTTCAT
*
81837042 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
81837067 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
81837093 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:81837084 original size:26 final size:24
Alignment explanation
Indices: 81837054--81837102 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
81837044 AATAAAAAAT
*
81837054 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
81837080 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
81837103 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:81840249 original size:14 final size:13
Alignment explanation
Indices: 81840228--81840267 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
81840218 AATTTATATC
*
81840228 AAATTAAATTATA
1 AAATTAAATCATA
81840241 AATATTAAATCATA
1 AA-ATTAAATCATA
81840255 AAATTAAA-CATA
1 AAATTAAATCATA
81840267 A
1 A
81840268 TAGAGGGGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 5 0.20
13 8 0.32
14 12 0.48
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTAAATCATA
Found at i:81840356 original size:2 final size:2
Alignment explanation
Indices: 81840349--81840380 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81840339 TAAAAGTTTA
81840349 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81840381 CAAAATGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81847250 original size:14 final size:14
Alignment explanation
Indices: 81847231--81847263 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
81847221 CTAATATTAC
81847231 TTATTAGATTTAAG
1 TTATTAGATTTAAG
81847245 TTATTAGATTTAAG
1 TTATTAGATTTAAG
81847259 TTATT
1 TTATT
81847264 TAAATTTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (14 bp):
TTATTAGATTTAAG
Found at i:81849210 original size:46 final size:46
Alignment explanation
Indices: 81849160--81849335 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81849150 TGGTTGAGCA
81849160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81849206 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81849251 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81849299 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81849336 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81849316 original size:93 final size:93
Alignment explanation
Indices: 81849157--81849327 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81849147 GGATGGTTGA
* *
81849157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81849222 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
81849250 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81849315 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81849328 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:81856814 original size:29 final size:29
Alignment explanation
Indices: 81856781--81856838 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
81856771 TCAATGGGGT
81856781 ATGAAAAGATTATTGGCTAGATATGTGGC
1 ATGAAAAGATTATTGGCTAGATATGTGGC
81856810 ATGAAAAGATTATTGGCTAGATATGTGGC
1 ATGAAAAGATTATTGGCTAGATATGTGGC
81856839 GTATGGCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (29 bp):
ATGAAAAGATTATTGGCTAGATATGTGGC
Found at i:81860699 original size:34 final size:34
Alignment explanation
Indices: 81860661--81860791 Score: 102
Period size: 34 Copynumber: 3.6 Consensus size: 34
81860651 CAAATGTGAG
81860661 CCCAGCTCTAGTTGGATAAACCAACAAT-GTTGCA
1 CCCAG-TCTAGTTGGATAAACCAACAATAGTTGCA
* * * *
81860695 CCCAGTGTTAGTCGGATTAACCAACGATAATAGTTGTAA
1 CCCAGT-CTAGTTGGATAAACCAAC---AATAGTTG-CA
*
81860734 GCCCAGGTCTAGTTGGATAAACCAACAATATTTGCA
1 -CCCA-GTCTAGTTGGATAAACCAACAATAGTTGCA
* * *
81860770 CCTAGTGCTAGTTAGATTAACC
1 CCCAGT-CTAGTTGGATAAACC
81860792 GACGATTGTG
Statistics
Matches: 76, Mismatches: 12, Indels: 17
0.72 0.11 0.16
Matches are distributed among these distances:
33 1 0.01
34 22 0.29
35 16 0.21
36 1 0.01
37 10 0.13
38 4 0.05
39 1 0.01
40 19 0.25
41 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (34 bp):
CCCAGTCTAGTTGGATAAACCAACAATAGTTGCA
Found at i:81860722 original size:74 final size:75
Alignment explanation
Indices: 81860628--81860797 Score: 200
Period size: 74 Copynumber: 2.3 Consensus size: 75
81860618 GTGCCCAGCA
* * * *
81860628 CTAGTCAGTTTAATCGACGAT-ATCAAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAAT-GT
1 CTAGTCAGATTAACCAACGATAAT-AAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGT
81860691 TGCACCCAGTG
65 TGCACCCAGTG
* * ** * *
81860702 TTAGTCGGATTAACCAACGATAATAGTTGTAAGCCCAGGTCTAGTTGGATAAACCAACAATATTT
1 CTAGTCAGATTAACCAACGATAATAAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGTT
*
81860767 GCACCTAGTG
66 GCACCCAGTG
* *
81860777 CTAGTTAGATTAACCGACGAT
1 CTAGTCAGATTAACCAACGAT
81860798 TGTGTGCCCA
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
74 49 0.62
75 30 0.38
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (75 bp):
CTAGTCAGATTAACCAACGATAATAAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGTT
GCACCCAGTG
Found at i:81860757 original size:40 final size:35
Alignment explanation
Indices: 81860659--81860762 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 35
81860649 ATCAAATGTG
* *
81860659 AGCCCAGCTCTAGTTGGATAAACCAACAATGTTGC
1 AGCCCAGGTCTAGTTGGATAAACCAACAATGTTGA
* *
81860694 A-CCCAGTGT-TAGTCGGATTAACCAACGATAATAGTTGTA
1 AGCCCAG-GTCTAGTTGGATAAACCAAC---AAT-GTTG-A
81860733 AGCCCAGGTCTAGTTGGATAAACCAACAAT
1 AGCCCAGGTCTAGTTGGATAAACCAACAAT
81860763 ATTTGCACCT
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
34 20 0.36
35 2 0.04
37 6 0.11
38 4 0.07
39 3 0.05
40 20 0.36
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (35 bp):
AGCCCAGGTCTAGTTGGATAAACCAACAATGTTGA
Found at i:81872326 original size:31 final size:31
Alignment explanation
Indices: 81872280--81872356 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
81872270 AAAGGTAAAA
* *
81872280 TGATT-AAATTGACAACTTATCTAAT-GCGAG
1 TGATTAAAATTAACAACTTATCTAATAG-AAG
*
81872310 TGATTAAAATTAACAACTTATTTAATAGAAG
1 TGATTAAAATTAACAACTTATCTAATAGAAG
*
81872341 TGATTAAAAATAACAA
1 TGATTAAAATTAACAA
81872357 ATATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
30 5 0.12
31 35 0.85
32 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (31 bp):
TGATTAAAATTAACAACTTATCTAATAGAAG
Found at i:81878739 original size:40 final size:40
Alignment explanation
Indices: 81878601--81878752 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 40
81878591 CGAATGGTAT
* * * * *
81878601 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAG-TGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAAA
* *
81878642 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGCTACCAAAA
* * * ** *
81878682 TCGGGTTAAGTCTCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAAA
* * *
81878722 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
81878753 TCGCTATATC
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
40 64 0.72
41 25 0.28
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAAA
Found at i:81891561 original size:40 final size:40
Alignment explanation
Indices: 81891465--81891617 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
81891455 CGAATGGTAT
* * * *
81891465 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
81891506 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
81891546 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
81891586 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81891618 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:81894380 original size:23 final size:23
Alignment explanation
Indices: 81894350--81894396 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
81894340 GAGATGAAAA
*
81894350 AACATCAATTACATTAGACAACC
1 AACATCAATTACATAAGACAACC
81894373 AACATCAATTACATAAGACAACC
1 AACATCAATTACATAAGACAACC
81894396 A
1 A
81894397 TTGTCTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.26, G:0.04, T:0.19
Consensus pattern (23 bp):
AACATCAATTACATAAGACAACC
Found at i:81897342 original size:31 final size:31
Alignment explanation
Indices: 81897304--81897366 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
81897294 ACCGGTAAGT
81897304 TTACTTTCCAGTTATCCGGACTTACTAAGCA
1 TTACTTTCCAGTTATCCGGACTTACTAAGCA
81897335 TTACTTTCCAGTTATCCGGACTTACTAAGCA
1 TTACTTTCCAGTTATCCGGACTTACTAAGCA
81897366 T
1 T
81897367 ATAAATGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (31 bp):
TTACTTTCCAGTTATCCGGACTTACTAAGCA
Found at i:81905662 original size:20 final size:20
Alignment explanation
Indices: 81905626--81905663 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81905616 ATGTTTTAAT
*
81905626 AATAAATAAAATTAAAGTAA
1 AATAAATAAAATGAAAGTAA
81905646 AATAAATGAAAA-GAAAGT
1 AATAAAT-AAAATGAAAGT
81905664 GAGAAAGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (20 bp):
AATAAATAAAATGAAAGTAA
Found at i:81905711 original size:13 final size:12
Alignment explanation
Indices: 81905693--81905722 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
81905683 CATGCAAAAT
81905693 AAAAGAAAGAAAG
1 AAAAGAAAG-AAG
81905706 AAAAGAAAGAAG
1 AAAAGAAAGAAG
81905718 AAAAG
1 AAAAG
81905723 TGTTGGACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAAGAAAGAAG
Found at i:81906338 original size:15 final size:15
Alignment explanation
Indices: 81906315--81906345 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81906305 TTGAACTAAG
*
81906315 TTTTTAATTATTGCA
1 TTTTGAATTATTGCA
81906330 TTTTGAATTATTGCA
1 TTTTGAATTATTGCA
81906345 T
1 T
81906346 ATGGTAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.58
Consensus pattern (15 bp):
TTTTGAATTATTGCA
Found at i:81908079 original size:73 final size:72
Alignment explanation
Indices: 81907961--81908111 Score: 248
Period size: 73 Copynumber: 2.1 Consensus size: 72
81907951 TCAGTGAGTT
* * *
81907961 ACACGGGCAAGGACACAGGCTGGACACGGTCATGTGTCTTAATTTCGAAAGTCACATGGCTTGGG
1 ACACGGGCAAGGACACAGGATGGACACGGCCATGTGTCTCAATTTCGAAAGTCACATGGCTTGGG
81908026 GTATTCC
66 GTATTCC
* *
81908033 ACACGGGCAAGGATACGGGATGGGACACGGCCATGTGTCTCAATTTCGAAAGTCACATGGCTTGG
1 ACACGGGCAAGGACACAGGAT-GGACACGGCCATGTGTCTCAATTTCGAAAGTCACATGGCTTGG
81908098 GGTATTCC
65 GGTATTCC
81908106 ACACGG
1 ACACGG
81908112 CCTGGCCACA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
72 18 0.25
73 55 0.75
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (72 bp):
ACACGGGCAAGGACACAGGATGGACACGGCCATGTGTCTCAATTTCGAAAGTCACATGGCTTGGG
GTATTCC
Found at i:81909487 original size:33 final size:33
Alignment explanation
Indices: 81909445--81909513 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
81909435 GCATTAAATA
*
81909445 GGTGCAAGGTTTACATGTGCCAGAATTCTAATC
1 GGTGCAAGGTTCACATGTGCCAGAATTCTAATC
*
81909478 GGTGCAAGGTTCACATGTGCCAGAATTCTGATC
1 GGTGCAAGGTTCACATGTGCCAGAATTCTAATC
81909511 GGT
1 GGT
81909514 TCTTCACTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (33 bp):
GGTGCAAGGTTCACATGTGCCAGAATTCTAATC
Found at i:81915524 original size:25 final size:25
Alignment explanation
Indices: 81915489--81915546 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
81915479 CTCTCTTTCA
* **
81915489 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATAAG
*
81915514 AGCCATGTAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATAAG
81915539 AGCCATAT
1 AGCCATAT
81915547 TCGAGAAGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATAAG
Found at i:81916556 original size:30 final size:30
Alignment explanation
Indices: 81916522--81916584 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
81916512 TTATTTAATT
*
81916522 AATTT-ATCATCTTTATTTT-ATCATATTTCC
1 AATTTAATCAT-TTTATTTTCAT-AAATTTCC
*
81916552 AATTTAATCATTTTCTTTTCATAAATTTCC
1 AATTTAATCATTTTATTTTCATAAATTTCC
81916582 AAT
1 AAT
81916585 GATGACTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.54
Consensus pattern (30 bp):
AATTTAATCATTTTATTTTCATAAATTTCC
Found at i:81932780 original size:20 final size:20
Alignment explanation
Indices: 81932757--81932808 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
81932747 ACTCAAGTGC
81932757 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
** * *
81932777 AAATGATTCCAATCAAGTTA
1 AAATGATTTTAACCAAGTCA
*
81932797 AAATCATTTTAA
1 AAATGATTTTAA
81932809 AATGATTTTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:81936406 original size:19 final size:21
Alignment explanation
Indices: 81936367--81936408 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
81936357 ACCCCTCAAC
*
81936367 AAAATAGAGTTGTTGAGAGGA
1 AAAATAGAATTGTTGAGAGGA
81936388 AAAATAGAATT-TT-AGAGGA
1 AAAATAGAATTGTTGAGAGGA
81936407 AA
1 AA
81936409 TGGCTAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 2 0.10
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (21 bp):
AAAATAGAATTGTTGAGAGGA
Found at i:81941853 original size:40 final size:40
Alignment explanation
Indices: 81941767--81941983 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
81941757 CAACCCGGTA
* * * *
81941767 CCTTCGGGATTTAG-CCGGATATCACT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCACACAAATG
*
81941806 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
**
81941846 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* **
81941886 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
**
81941926 CCTTCGGG-CTTAGCCCGGA-ATTAGTCGCT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
81941965 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81941984 TTATCATCCG
Statistics
Matches: 157, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 46 0.29
40 110 0.70
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:81941899 original size:80 final size:79
Alignment explanation
Indices: 81941767--81941987 Score: 295
Period size: 79 Copynumber: 2.8 Consensus size: 79
81941757 CAACCCGGTA
* * * *
81941767 CCTTCGGGATTTAG-CCGGATATCACTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATAT-AGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
81941831 TAACTCACACAAATG
65 TAACTCACACAAATG
* *
81941846 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
* **
81941911 TAACTCGCATGAATG
65 TAACTCACACAAATG
*
81941926 CCTTCGGG-CTTAGCCCGGA-ATTAGTCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
81941988 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 63 0.50
80 63 0.50
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCACACAAATG
Found at i:81949573 original size:40 final size:40
Alignment explanation
Indices: 81949528--81949695 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
81949518 CGGAATATAA
81949528 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81949568 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81949608 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81949648 CCGGATATAATTTCCAGCATAATTGCCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81949688 CCGGATAT
1 CCGGATAT
81949696 CATTCAATTT
Statistics
Matches: 108, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 107 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81956290 original size:17 final size:18
Alignment explanation
Indices: 81956248--81956296 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
81956238 AGTTGAAAAG
81956248 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
81956267 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
81956284 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
81956297 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:81957178 original size:40 final size:40
Alignment explanation
Indices: 81957112--81957278 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
81957102 AAATTGAATG
* * *
81957112 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
81957151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81957191 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81957231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81957271 ATATCCGG
1 ATATCCGG
81957279 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81964283 original size:17 final size:18
Alignment explanation
Indices: 81964241--81964289 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
81964231 AGTTGAAAAG
81964241 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
81964260 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
81964277 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
81964290 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:81965178 original size:40 final size:40
Alignment explanation
Indices: 81965112--81965278 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
81965102 AAATTGAATG
* * *
81965112 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
81965151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81965191 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81965231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81965271 ATATCCGG
1 ATATCCGG
81965279 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81969549 original size:16 final size:17
Alignment explanation
Indices: 81969528--81969572 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
81969518 GTTTTTCCTC
81969528 TCTTTTTTTTCAC-TTT
1 TCTTTTTTTTCACATTT
*
81969544 TCTTTTCTTTCACATTT
1 TCTTTTTTTTCACATTT
81969561 TCGTTCTTTTTT
1 TC-TT-TTTTTT
81969573 TTCTCTCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 12 0.50
17 5 0.21
18 2 0.08
19 5 0.21
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.71
Consensus pattern (17 bp):
TCTTTTTTTTCACATTT
Found at i:81973928 original size:7 final size:7
Alignment explanation
Indices: 81973916--81973959 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
81973906 TGCACACTAT
81973916 GGTTTAG
1 GGTTTAG
81973923 GGTTTAG
1 GGTTTAG
81973930 GGTTTTAG
1 GG-TTTAG
* *
81973938 GGTCTAA
1 GGTTTAG
81973945 GGTTTAG
1 GGTTTAG
81973952 GGTTTAG
1 GGTTTAG
81973959 G
1 G
81973960 TTTCATACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 25 0.78
8 7 0.22
ACGTcount: A:0.16, C:0.02, G:0.41, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:81975905 original size:48 final size:46
Alignment explanation
Indices: 81975687--81976050 Score: 298
Period size: 47 Copynumber: 7.8 Consensus size: 46
81975677 TGGGATATAT
* * *
81975687 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTA--TG
* * * *
81975737 TGCTGATGCATGTCCCAAACATGTCTTACACTAGC-A-CATCTCT-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTATG
* * * * *
81975780 TAGCCAATGCGTGTCCCAGACACGTCTTACATTGGCTATC-TCTGTCG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTAT-G
* * * *
81975827 AGGCCGATGCATGTCGCAGATATGTCTTACACTGGC-AGTCATCTCTG
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCTATG
* *
81975874 TGCCGATGCCATGGCCTAGACATGGTCTTACACTGGCTATCA-CAGTATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATC--TATG
* * * *
81975923 -GCTGATGCATGTCCCAGACATGTCTTACACTAGCCT-TCGTCT-GG
1 TGCCGATGCATGTCCCAGACATGTCTTACACT-GGCTATCATCTATG
*
81975967 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AATG
1 -TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTATG
81976015 TGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGC
81976051 GTACAAATCA
Statistics
Matches: 252, Mismatches: 40, Indels: 48
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.00
44 28 0.11
45 6 0.02
46 44 0.17
47 90 0.36
48 59 0.23
49 17 0.07
50 7 0.03
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTATG
Found at i:81975946 original size:94 final size:93
Alignment explanation
Indices: 81975687--81976047 Score: 387
Period size: 94 Copynumber: 3.9 Consensus size: 93
81975677 TGGGATATAT
* * * *
81975687 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTA--TG-GCCGATGCATGTC
*
81975751 CCAAACATGTCTTACACTAGCA-CATCTCT-
63 CCAGACATGTCTTACACTAGCATCATCTCTG
* * * * * *
81975780 TAGCCAATG-CGTGTCCCAGACA-CGTCTTACATTGGCTATCTCTGTCGA-GGCCGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGT--ATGGCCGATGCATGTC
* * *
81975842 GCAGATATGTCTTACACTGGCAGTCATCTCTG
63 CCAGACATGTCTTACACTAGCA-TCATCTCTG
* * *
81975874 TGCCGATGCCATGGCCTAGACATGGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCCGATGCATGTCCCA
*
81975939 GACATGTCTTACACTAGC--CTTCGTCTGG
66 GACATGTCTTACACTAGCATCATC-TCT-G
* * *
81975967 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCCGATGCATGTCCC
81976032 AGACATGTCTTACACT
65 AGACATGTCTTACACT
81976048 GGCGTACAAA
Statistics
Matches: 223, Mismatches: 32, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
91 33 0.15
92 19 0.09
93 29 0.13
94 122 0.55
95 20 0.09
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCATCATCTCTG
Found at i:81975948 original size:141 final size:140
Alignment explanation
Indices: 81975688--81976050 Score: 366
Period size: 141 Copynumber: 2.6 Consensus size: 140
81975678 GGGATATATT
* * * * *
81975688 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-ATGTG-GCCGATGCATGGCCC
* * ** * ** * *
81975753 AAACATGTCTTACACTAGC-A-CATCTCT-TAGCCAATGCGTGTCCCAGACACGTCTTACA-TTG
64 AGACATGTCTTACACTGGCTATCA-CAGTATGGCTGATGCATGTCCCAGACACGTCTTACACTAG
*
81975814 GCTATC-TCTGTCGAG
128 CCT-TCGTCTG--GAG
* * * *
81975829 GCCGATG-CATGTCGCAGATAT-GTCTTACACTGGC-AGTCAT-CTCTGTGCCGATGCCATGGCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATAATGTG-GCCGATG-CATGGCC
* *
81975890 TAGACATGGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCAGACATGTCTTACACTA
63 CAGACAT-GTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCAGACACGTCTTACACTA
*
81975955 GCCTTCGTCTGGAT
127 GCCTTCGTCTGGAG
*
81975969 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCATGGCCCAG
81976034 ACATGTCTTACACTGGC
66 ACATGTCTTACACTGGC
81976051 GTACAAATCA
Statistics
Matches: 182, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
137 8 0.04
138 11 0.06
139 29 0.16
140 37 0.20
141 61 0.34
142 32 0.18
143 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (140 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCATGGCCCAG
ACATGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCAGACACGTCTTACACTAGCCT
TCGTCTGGAG
Found at i:81976432 original size:30 final size:30
Alignment explanation
Indices: 81976391--81976448 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
81976381 AAATTTACAT
* *
81976391 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
81976421 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
81976449 TGCTCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:81984405 original size:42 final size:43
Alignment explanation
Indices: 81984302--81984455 Score: 139
Period size: 43 Copynumber: 3.6 Consensus size: 43
81984292 CACATCCATT
* * * * * * ** *
81984302 ATGAACTCGAACCTCTCAATGAGCTCGGATGCTCGCATCCATA
1 ATGAACTTGGACCACTCAACGAGCTCAGATGCTCACATAGATC
*
81984345 ATGAACTTGGACCTCTCAACGAGCTCAGATGC-CACATAGATC
1 ATGAACTTGGACCACTCAACGAGCTCAGATGCTCACATAGATC
* * * *
81984387 ATGAACTTGGACCACTCAACAAGTTCAGATTCTCACATATATC
1 ATGAACTTGGACCACTCAACGAGCTCAGATGCTCACATAGATC
* * * *
81984430 ATAAACTCGGACCGCTCAATGAGCTC
1 ATGAACTTGGACCACTCAACGAGCTC
81984456 GAATTTCTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 34 0.37
43 57 0.63
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGAACTTGGACCACTCAACGAGCTCAGATGCTCACATAGATC
Found at i:81984442 original size:43 final size:42
Alignment explanation
Indices: 81984348--81984448 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
81984338 ATCCATAATG
* * *
81984348 AACTTGGACCTCTCAACGAGCTCAGATGCCACATAGATCATG
1 AACTTGGACCACTCAACAAGCTCAGATGCCACATAGATCATA
* * *
81984390 AACTTGGACCACTCAACAAGTTCAGATTCTCACATATATCATA
1 AACTTGGACCACTCAACAAGCTCAGATGC-CACATAGATCATA
* *
81984433 AACTCGGACCGCTCAA
1 AACTTGGACCACTCAA
81984449 TGAGCTCGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.23
Consensus pattern (42 bp):
AACTTGGACCACTCAACAAGCTCAGATGCCACATAGATCATA
Found at i:81998826 original size:48 final size:48
Alignment explanation
Indices: 81998751--81998928 Score: 188
Period size: 48 Copynumber: 3.7 Consensus size: 48
81998741 ATATCGATGT
* * *
81998751 CGATGGCATATCCCAGATATGGTCTTACACTGGCTCTCACACATCCGTGC
1 CGAT-GCATGTCCCAGACATGGTCTTACACTGGCTCTCA-ACATCAGTGC
* * *
81998801 CGATGCATGTCCCAGACAT-GTCTTACACTGGCACTCATC-TCAATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCAACATCAGTGC
*
81998847 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATA-AT-A-TGGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCA-ACATCAGT-GC
* *
81998895 CGATGCATGTCCCAAACAT-ATCTTACACTGGCTC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTC
81998929 ACATAACAGC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 23 0.21
47 29 0.26
48 41 0.37
49 14 0.13
50 4 0.04
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCAACATCAGTGC
Found at i:81998934 original size:46 final size:44
Alignment explanation
Indices: 81998798--81998934 Score: 159
Period size: 46 Copynumber: 3.0 Consensus size: 44
81998788 CACACATCCG
*
81998798 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATC-TCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGG--CTCA-CATAAA
**
81998844 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACATAA-A
* *
81998891 TGGCCGATGCATGTCCCAAACATATCTTACACTGGCTCACATAA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATAA
81998935 CAGCAGTGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
45 1 0.01
46 30 0.38
47 29 0.37
48 19 0.24
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATAAA
Found at i:82000298 original size:10 final size:10
Alignment explanation
Indices: 82000285--82000337 Score: 69
Period size: 10 Copynumber: 5.7 Consensus size: 10
82000275 AACCACTATA
*
82000285 AAATAATGTT
1 AAATAATATT
82000295 AAATAATATT
1 AAATAATATT
82000305 AAATAATATT
1 AAATAATATT
82000315 ---TAATATT
1 AAATAATATT
82000322 AAA-AATATT
1 AAATAATATT
82000331 AAATAAT
1 AAATAAT
82000338 GTTATAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
7 7 0.18
9 9 0.24
10 22 0.58
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (10 bp):
AAATAATATT
Found at i:82006813 original size:18 final size:18
Alignment explanation
Indices: 82006790--82006825 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
82006780 GTAGTGAATT
82006790 ATATGAA-AGTGATAAGTG
1 ATATGAAGA-TGATAAGTG
82006808 ATATGAAGATGATAAGTG
1 ATATGAAGATGATAAGTG
82006826 TGAGTGTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (18 bp):
ATATGAAGATGATAAGTG
Found at i:82009722 original size:40 final size:40
Alignment explanation
Indices: 82009649--82009856 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
82009639 CAATTGAATG
* * ** *
82009649 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
82009689 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
82009729 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
82009769 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
82009809 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
82009849 ATATCCGG
1 ATATCCGG
82009857 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:82009787 original size:80 final size:80
Alignment explanation
Indices: 82009651--82009856 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
82009641 ATTGAATGAT
* * ** * * * *
82009651 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
82009715 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
82009731 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
82009796 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
82009811 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
82009857 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:82017823 original size:40 final size:40
Alignment explanation
Indices: 82017688--82017892 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
82017678 CAATTGAATG
* * ** * **
82017688 ATATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * **
82017727 ATA-CCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GAC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCGTT
* *
82017765 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
82017805 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
82017845 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
82017885 ATATCCGG
1 ATATCCGG
82017893 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
38 15 0.11
39 41 0.30
40 82 0.59
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:82025887 original size:40 final size:39
Alignment explanation
Indices: 82025722--82025905 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
82025712 AAATTGAATG
* * *
82025722 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
82025762 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
82025802 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
82025842 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
82025881 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
82025906 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:82025930 original size:80 final size:81
Alignment explanation
Indices: 82025762--82025950 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
82025752 GCTGGAAATT
* * * *
82025762 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
82025827 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
82025843 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
82025906 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
82025922 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
82025951 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.