Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 277 of 378
Found at i:83347776 original size:31 final size:31
Alignment explanation
Indices: 83347730--83347796 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
83347720 TGGTTGTATT
* *
83347730 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
83347761 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
83347792 TTTTA
1 TTTTA
83347797 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:83349494 original size:21 final size:22
Alignment explanation
Indices: 83349461--83349503 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
83349451 GAAAAGACAA
*
83349461 GTTACAGTCTTGAAT-TAATTT
1 GTTACAGTATTGAATATAATTT
* *
83349482 GTTATAGTATTGATTATAATTT
1 GTTACAGTATTGAATATAATTT
83349504 CAGTAAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (22 bp):
GTTACAGTATTGAATATAATTT
Found at i:83350287 original size:20 final size:20
Alignment explanation
Indices: 83350262--83350299 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83350252 GTTTATTCGC
*
83350262 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
83350282 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
83350300 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:83351959 original size:28 final size:28
Alignment explanation
Indices: 83351927--83351995 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
83351917 GCGTAGATCA
83351927 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
83351955 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
83351983 CGATA-TACCCCTA
1 CGAAATTACCCCTA
83351996 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:83358297 original size:20 final size:20
Alignment explanation
Indices: 83358272--83358309 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83358262 GTTTATTCGC
*
83358272 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
83358292 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
83358310 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:83359969 original size:28 final size:28
Alignment explanation
Indices: 83359937--83360005 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
83359927 GCGTAGATCA
83359937 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
83359965 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
83359993 CGATA-TACCCCTA
1 CGAAATTACCCCTA
83360006 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:83365072 original size:27 final size:27
Alignment explanation
Indices: 83365036--83365098 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
83365026 CTGGGAACTA
* *
83365036 GTGCCACCTACAATATTGGCACCACTT
1 GTGCCGCCTACAAGATTGGCACCACTT
* *
83365063 GTGCTGCCTACAAGATTGGCACCATTT
1 GTGCCGCCTACAAGATTGGCACCACTT
83365090 GTGCCGCCT
1 GTGCCGCCT
83365099 TTCCCATAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.27
Consensus pattern (27 bp):
GTGCCGCCTACAAGATTGGCACCACTT
Found at i:83373218 original size:23 final size:24
Alignment explanation
Indices: 83373179--83373224 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
83373169 TAAAGTAGGA
83373179 AATTTGTATTTTAGAATTTTATAT
1 AATTTGTATTTTAGAATTTTATAT
*
83373203 AATTTTTA-TTTAGAATTTTATA
1 AATTTGTATTTTAGAATTTTATA
83373225 ATTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (24 bp):
AATTTGTATTTTAGAATTTTATAT
Found at i:83384016 original size:46 final size:47
Alignment explanation
Indices: 83383867--83384039 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
83383857 GATTTGAGCC
* * *
83383867 CCAGTGTAAGA-CATGTCTAGGACAT-GCTTCGGCCACATTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATATTATGAGAG
* * * ** *
83383913 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCTAGACAAGGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGCCATAT-TATGAGAG
* *
83383961 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCATATTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATATTATGAGAG
83384007 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
83384040 ATACAGAGAT
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
46 30 0.29
47 49 0.48
48 23 0.23
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGCCATATTATGAGAG
Found at i:83384030 original size:94 final size:94
Alignment explanation
Indices: 83383869--83384040 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 94
83383859 TTTGAGCCCC
* *
83383869 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
83383934 GACATGGCATCGACATCTAGACAAGGGCT
66 GACATGGCATCGACATCTAGACAAGGGCT
* * *
83383963 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
83384028 GACATGGCATCGA
66 GACATGGCATCGA
83384041 TACAGAGATA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATCTAGACAAGGGCT
Found at i:83384064 original size:48 final size:48
Alignment explanation
Indices: 83383912--83384123 Score: 209
Period size: 48 Copynumber: 4.5 Consensus size: 48
83383902 CATTATGAGA
* * * *
83383912 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC-TAGACAAGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATA-CAGAGATAAGT
* * ** * * * *
83383960 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATC-AGCCATATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATACAGA-GATAAGT
83384006 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAGATAAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAGATAAGT
* * * * *
83384054 GCCAGAGTAAGACCAGGTCTGGGACATGGTATCGGTACAGAGATGAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAGATAAGT
*
83384102 GCCAGAGTAAGA-CATGTCTGGG
1 GCCAGTGTAAGACCATGTCTGGG
83384124 GCATCTATTG
Statistics
Matches: 137, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 19 0.14
47 35 0.26
48 75 0.55
49 4 0.03
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAGATAAGT
Found at i:83384064 original size:94 final size:94
Alignment explanation
Indices: 83383867--83384081 Score: 297
Period size: 94 Copynumber: 2.3 Consensus size: 94
83383857 GATTTGAGCC
* * *
83383867 CCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
*
83383932 GGGACATGGCATCGACATCTAGACAAGGG
66 GGGACATGGCATCGACATCGAGACAAGGG
* * *
83383961 CTAGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * *
83384026 GGGACATGGCATCGATA-CAGAGATAAGTG
66 GGGACATGGCATCGACATC-GAGACAAGGG
* *
83384055 CCAGAGTAAGACCAGGTCTGGGACATG
1 CCAGTGTAAGA-CATGTCTGGGACATG
83384082 GTATCGGTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
93 1 0.01
94 91 0.87
95 13 0.12
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (94 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGACATCGAGACAAGGG
Found at i:83392139 original size:48 final size:48
Alignment explanation
Indices: 83392024--83392526 Score: 232
Period size: 48 Copynumber: 10.6 Consensus size: 48
83392014 AATCGAAGCT
* * * * *
83392024 GATGCCATGTCCCAGACATAGTCTTACACT-AGCTCTCACATATCCGTGCT
1 GATGCCATGTCCCAGACATTGTCTTACACTCA-CAC-CTC-TATACGTGCC
*
83392074 GATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCC
1 GATGCCATGTCCCAGACATTGTCTTACACTCACACCTCTATACGTGCC
* * *
83392122 GATGCCATGTCCCAGACATGGTCTTACACTAACACATC--T-CGTAGCC
1 GATGCCATGTCCCAGACATTGTCTTACACTCACACCTCTATACGT-GCC
** * **
83392168 GATG-CATG-CTCCAGACA-TGTCTTACACTGGCTTACATCTCGA-G-GCC
1 GATGCCATGTC-CCAGACATTGTCTTACACT--CACACCTCTATACGTGCC
* * * *** * * *
83392214 GATG-CGTATCCTAGACA-TGTCTTACACT-AGTTCTCGTCT-CAATGTC
1 GATGCCATGTCCCAGACATTGTCTTACACTCACACCTC-TATAC-GTGCC
* * * *
83392260 GATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATC-A-A-GT--T
1 GATGCCATGTCCCAGACATTGTCTTACACT-CACA-CC-TCTATACGTGCC
* ** * * * * *
83392306 GATGCCATGTCCAAGACATCATCTTACACTGACTA--TCGAAATCGAAGCT
1 GATGCCATGTCCCAGACATTGTCTTACACTCAC-ACCTCTATA-CG-TGCC
* * * * * *
83392355 GATGCCATGTCCCAGACATAGTCTTAAACT-AGCTCTCACATATCCGTGCT
1 GATGCCATGTCCCAGACATTGTCTTACACTCA-CAC-CTC-TATACGTGCC
*
83392405 GATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCC
1 GATGCCATGTCCCAGACATTGTCTTACACTCACACCTCTATACGTGCC
* * *
83392453 GATGCCATGTCCCAGACATGGTCTTACACTAACACATC--T-CGTAGCC
1 GATGCCATGTCCCAGACATTGTCTTACACTCACACCTCTATACGT-GCC
83392499 GATG-CATG-CTCCAGACA-TGTCTTACACT
1 GATGCCATGTC-CCAGACATTGTCTTACACT
83392527 GGCTTACATC
Statistics
Matches: 350, Mismatches: 67, Indels: 78
0.71 0.14 0.16
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 25 0.07
45 29 0.08
46 81 0.23
47 11 0.03
48 96 0.27
49 32 0.09
50 62 0.18
51 6 0.02
52 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATTGTCTTACACTCACACCTCTATACGTGCC
Found at i:83392151 original size:98 final size:96
Alignment explanation
Indices: 83391924--83392152 Score: 254
Period size: 98 Copynumber: 2.4 Consensus size: 96
83391914 ATAGGGTATA
* *
83391924 ATGCCAATGCCATGTCCCAGACATGGTCTTACA-TTGCTCATCCATCAAGTTGATGCCATGTCCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTTGATGCCATGTCCA
*
83391988 AGACATCATCTTACACTGACTATCGAAATCG
66 AGACATCATCTTACACTCACTATCGAAATCG
* * * *
83392019 AAGCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTC-TCACAT-ATCCGTGCTGATGCCAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT--TGATGCCAT
** * *
83392082 GTCCAAGACATTGTCTTACACTCAC-ACCTCTATA-CG
61 GTCCAAGACATCATCTTACACTCACTA--TCGAAATCG
83392118 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
83392153 ACACATCTCG
Statistics
Matches: 112, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
95 32 0.29
96 8 0.07
97 2 0.02
98 33 0.29
99 33 0.29
100 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (96 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTTGATGCCATGTCCA
AGACATCATCTTACACTCACTATCGAAATCG
Found at i:83392536 original size:46 final size:46
Alignment explanation
Indices: 83391930--83392669 Score: 308
Period size: 46 Copynumber: 15.7 Consensus size: 46
83391920 TATAATGCCA
* * **
83391930 ATGCCATGTCCCAGACATGGTCTTACA-TTGCT-CATCCATC-AAGTTG
1 ATGCCATGT-CCAGACATGGTCTTACACTAGCTACAT-C-TCGTAGCCG
** ** * *
83391976 ATGCCATGTCCAAGACATCATCTTACACT-GACTATCGAAATCGAAGCTG
1 ATGCCATGTCC-AGACATGGTCTTACACTAG-CTA-C-ATCTCGTAGCCG
* * *
83392025 ATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCACATATCCGT-GCTG
1 ATGCCATGT-CCAGACATGGTCTTACACTAG--CT-ACATCT-CGTAGCCG
* *
83392075 ATGCCATGTCCAAGACATTGTCTTACACTCA-C-ACCTCTATACGT-GCCG
1 ATGCCATGTCC-AGACATGGTCTTACACT-AGCTACATC--T-CGTAGCCG
*
83392123 ATGCCATGTCCCAGACATGGTCTTACACTAAC-ACATCTCGTAGCCG
1 ATGCCATGT-CCAGACATGGTCTTACACTAGCTACATCTCGTAGCCG
*
83392169 ATG-CATGCTCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCG
1 ATGCCATG-TCCAGACATGGTCTTACACTAGC-TACATCTCGTA-GCCG
* * * * *
83392215 ATG-CGTATCCTAGACAT-GTCTTACACTAGTTCT-CGTCTC-AATGTCG
1 ATGCCATGTCC-AGACATGGTCTTACACTAG--CTACATCTCGTA-GCCG
* * **
83392261 ATGCCATGTCCCAGACATGGTCTTACA-TTGCT-CATCCATC-AAGTTG
1 ATGCCATGT-CCAGACATGGTCTTACACTAGCTACAT-C-TCGTAGCCG
** ** * *
83392307 ATGCCATGTCCAAGACATCATCTTACACT-GACTATCGAAATCGAAGCTG
1 ATGCCATGTCC-AGACATGGTCTTACACTAG-CTA-C-ATCTCGTAGCCG
* * * *
83392356 ATGCCATGTCCCAGACATAGTCTTAAACTAGCTCTCACATATCCGT-GCTG
1 ATGCCATGT-CCAGACATGGTCTTACACTAG--CT-ACATCT-CGTAGCCG
* *
83392406 ATGCCATGTCCAAGACATTGTCTTACACTCA-C-ACCTCTATACGT-GCCG
1 ATGCCATGTCC-AGACATGGTCTTACACT-AGCTACATC--T-CGTAGCCG
*
83392454 ATGCCATGTCCCAGACATGGTCTTACACTAAC-ACATCTCGTAGCCG
1 ATGCCATGT-CCAGACATGGTCTTACACTAGCTACATCTCGTAGCCG
*
83392500 ATG-CATGCTCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCG
1 ATGCCATG-TCCAGACATGGTCTTACACTAGC-TACATCTCGTA-GCCG
* * * * *
83392546 ATG-CGTATCCTAGACAT-GTCTTACACTAGTTCT-CGTCTC-AATGTCG
1 ATGCCATGTCC-AGACATGGTCTTACACTAG--CTACATCTCGTA-GCCG
* * *
83392592 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCG
1 ATGCCATGT-CCAGACATGGTCTTACACTAGCT-ACAT-CTCGTAGCCG
*
83392640 ATG-CATGTCCTAGACAT-GACTTACACTAGC
1 ATGCCATGTCC-AGACATGGTCTTACACTAGC
83392670 ACACAAATAA
Statistics
Matches: 562, Mismatches: 65, Indels: 134
0.74 0.09 0.18
Matches are distributed among these distances:
44 22 0.04
45 46 0.08
46 182 0.32
47 45 0.08
48 114 0.20
49 68 0.12
50 71 0.13
51 12 0.02
52 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCAGACATGGTCTTACACTAGCTACATCTCGTAGCCG
Found at i:83392666 original size:331 final size:331
Alignment explanation
Indices: 83391930--83392618 Score: 1369
Period size: 331 Copynumber: 2.1 Consensus size: 331
83391920 TATAATGCCA
83391930 ATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATCAAGTTGATGCCATGTCCAAGACATC
1 ATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATCAAGTTGATGCCATGTCCAAGACATC
*
83391995 ATCTTACACTGACTATCGAAATCGAAGCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTCT
66 ATCTTACACTGACTATCGAAATCGAAGCTGATGCCATGTCCCAGACATAGTCTTAAACTAGCTCT
83392060 CACATATCCGTGCTGATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCCGAT
131 CACATATCCGTGCTGATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCCGAT
83392125 GCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGCTCCAGACATGTCT
196 GCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGCTCCAGACATGTCT
83392190 TACACTGGCTTACATCTCGAGGCCGATGCGTATCCTAGACATGTCTTACACTAGTTCTCGTCTCA
261 TACACTGGCTTACATCTCGAGGCCGATGCGTATCCTAGACATGTCTTACACTAGTTCTCGTCTCA
83392255 ATGTCG
326 ATGTCG
83392261 ATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATCAAGTTGATGCCATGTCCAAGACATC
1 ATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATCAAGTTGATGCCATGTCCAAGACATC
83392326 ATCTTACACTGACTATCGAAATCGAAGCTGATGCCATGTCCCAGACATAGTCTTAAACTAGCTCT
66 ATCTTACACTGACTATCGAAATCGAAGCTGATGCCATGTCCCAGACATAGTCTTAAACTAGCTCT
83392391 CACATATCCGTGCTGATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCCGAT
131 CACATATCCGTGCTGATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCCGAT
83392456 GCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGCTCCAGACATGTCT
196 GCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGCTCCAGACATGTCT
83392521 TACACTGGCTTACATCTCGAGGCCGATGCGTATCCTAGACATGTCTTACACTAGTTCTCGTCTCA
261 TACACTGGCTTACATCTCGAGGCCGATGCGTATCCTAGACATGTCTTACACTAGTTCTCGTCTCA
83392586 ATGTCG
326 ATGTCG
83392592 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
83392619 CTAGCTCTCA
Statistics
Matches: 357, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
331 357 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (331 bp):
ATGCCATGTCCCAGACATGGTCTTACATTGCTCATCCATCAAGTTGATGCCATGTCCAAGACATC
ATCTTACACTGACTATCGAAATCGAAGCTGATGCCATGTCCCAGACATAGTCTTAAACTAGCTCT
CACATATCCGTGCTGATGCCATGTCCAAGACATTGTCTTACACTCACACCTCTATACGTGCCGAT
GCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGCTCCAGACATGTCT
TACACTGGCTTACATCTCGAGGCCGATGCGTATCCTAGACATGTCTTACACTAGTTCTCGTCTCA
ATGTCG
Found at i:83400360 original size:49 final size:50
Alignment explanation
Indices: 83400296--83400421 Score: 155
Period size: 50 Copynumber: 2.5 Consensus size: 50
83400286 TCAAGTCGAT
* * * *
83400296 GCCATGTCCCAGACATGGTCTTCCACTGACTATC-GAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAGAAATCCAGGCCAAC
* * * * * *
83400345 GCCATGTCCCGGACATGGTCTTACACTAACTCTCAGATATCCATGCTAAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAGAAATCCAGGCCAAC
83400395 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
83400422 CACACCTCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
49 30 0.46
50 35 0.54
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTAACTATCAGAAATCCAGGCCAAC
Found at i:83400456 original size:48 final size:48
Alignment explanation
Indices: 83400237--83400607 Score: 177
Period size: 46 Copynumber: 7.8 Consensus size: 48
83400227 AAACATAGGG
* * **
83400237 TATAA-TGCTGATGCGATGTTCCAGACATGGTCTTACACT-AGCTTATC
1 TATAAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTCA-CACATC
* * * *
83400284 CATCAAGT-C-GATGCCATGTCCCAGACATGGTCTTCCACTGAC-TATC
1 TAT-AAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTCACACATC
* * * * * * *
83400330 GA-AATCGAGGCCGACGCCATGTCCCGGACATGGTCTTACACTAACTC-TC
1 TATAA--G-TGCTGATGCCATGTCCCAGACATGGTCTTACACTCACACATC
* * *
83400379 AGATATCCA-TGCTAATGCCATGTCCCAGACATGGTCTTACACTCACACCTC
1 ---TAT-AAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTCACACATC
* *
83400430 TATAAGTGCTGATGCCATGTCCCAGACATGTTCTTACACTGACACATC
1 TATAAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTCACACATC
* ** **
83400478 --T-CGTAGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC
1 TATAAGT-GCTGATGCCATGTCCCAGACATGGTCTTACACT--CACACATC
* * * * * * * *
83400524 T-TGAG-GCCGATG-CATGTTCTAGACAT-ATCTTACACTGGCTCTCGTC
1 TATAAGTGCTGATGCCATGTCCCAGACATGGTCTTACACT--CACACATC
*
83400570 T-CAA-TGCTGATGCCATGTCCCAGACATGGTCTTACACT
1 TATAAGTGCTGATGCCATGTCCCAGACATGGTCTTACACT
83400608 GGCTCTCATA
Statistics
Matches: 254, Mismatches: 46, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 59 0.23
47 44 0.17
48 56 0.22
49 32 0.13
50 32 0.13
51 2 0.01
52 1 0.00
54 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TATAAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTCACACATC
Found at i:83400540 original size:46 final size:46
Alignment explanation
Indices: 83400397--83400653 Score: 186
Period size: 46 Copynumber: 5.5 Consensus size: 46
83400387 ATGCTAATGC
** * * *
83400397 CATGTCCCAGACATGGTCTTACACT--CACACCTCTATAAGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCT-TGAG-GCCGATG
* * *
83400444 CCATGTCCCAGACATGTTCTTACACTGAC--ACATCTCGTA-GCCAATG
1 -CATGTCCCAGACATG-TCTTACACTGGCTTACATCTTG-AGGCCGATG
83400490 CATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATG
* * * * ** * *
83400536 CATGTTCTAGACATATCTTACACTGGCTCT-CGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGCCGATG
** *
83400582 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGGCCGATG
**
83400630 CATGTCCCAGACATAACTTACACT
1 CATGTCCCAGACATGTCTTACACT
83400654 AGCACACAAA
Statistics
Matches: 170, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 62 0.36
47 28 0.16
48 52 0.31
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATG
Found at i:83400609 original size:48 final size:48
Alignment explanation
Indices: 83400240--83400614 Score: 222
Period size: 48 Copynumber: 7.9 Consensus size: 48
83400230 CATAGGGTAT
* * * *
83400240 AATGCTGATGCGATGTTCCAGACATGGTCTTACACTAGCT-T-ATCCATC
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGT-C-TC
* * * **
83400288 AA-G-TCGATGCCATGTCCCAGACATGGTCTTCCACTGACTATCGAAATC
1 AATGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCG-TCTC
* * * * * ** *
83400336 GAGGCCGACGCCATGTCCCGGACATGGTCTTACACTAACTCTCAGATATC
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-G-TCTC
* * * * * *
83400386 CATGCTAATGCCATGTCCCAGACATGGTCTTACACT--CACACCTCTAT
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCT-C
* * *
83400433 AAGTGCTGATGCCATGTCCCAGACATGTTCTTACACTGACACATC-TCGT-
1 AA-TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCGTC-TC
** * *
83400482 -A-GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTT
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CGTCTC
* * * * * *
83400526 GAGGCCGATG-CATGTTCTAGACAT-ATCTTACACTGGCTCTCGTCTC
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTC
83400572 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
83400615 ATAATGTGGC
Statistics
Matches: 258, Mismatches: 48, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.05
45 15 0.06
46 50 0.19
47 44 0.17
48 58 0.22
49 33 0.13
50 40 0.16
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTC
Found at i:83400626 original size:94 final size:96
Alignment explanation
Indices: 83400294--83400653 Score: 309
Period size: 94 Copynumber: 3.8 Consensus size: 96
83400284 CATCAAGTCG
* * * *
83400294 ATGCCATGTCCCAGACATGGTCTTCCACTGACTATCGA-AATCGAGGCCGACGCCATGTCCCGGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGATAAT-GAGGCCGATGCCATGTCCCAGA
* * *
83400358 CATGGTCTTACACTAACTCTCAGATATCCATGCTA
65 CATGATCTTACACTGACTCTC-G-TCT-CATGCTA
* * * * *
83400393 ATGCCATGTCCCAGACATGGTCTTACACTCACACCTCTATAA-G-TGCTGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC-TCTCGATAATGAGGCCGATGCCATGTCCCAGA
* * *
83400456 CATGTTCTTACACTGACACATC-TCGT-A-GCCA
65 CATGATCTTACACTGACTC-TCGTC-TCATGCTA
* ** * *
83400487 ATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TAC-ATCTTGAGGCCGATG-CATGTTCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CGATAATGAGGCCGATGCCATGTCCCAGA
* *
83400547 CAT-ATCTTACACTGGCTCTCGTCTCAATGCTG
65 CATGATCTTACACTGACTCTCGTCTC-ATGCTA
* *
83400579 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATGTGGCCGATG-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGATAATGAGGCCGATGCCATGTCCCAGAC
*
83400642 AT-AACTTACACT
66 ATGATCTTACACT
83400654 AGCACACAAA
Statistics
Matches: 213, Mismatches: 34, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
89 3 0.01
90 17 0.08
91 15 0.07
92 22 0.10
93 28 0.13
94 54 0.25
95 2 0.01
96 1 0.00
97 1 0.00
98 32 0.15
99 33 0.15
100 3 0.01
101 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGATAATGAGGCCGATGCCATGTCCCAGAC
ATGATCTTACACTGACTCTCGTCTCATGCTA
Found at i:83405357 original size:17 final size:18
Alignment explanation
Indices: 83405315--83405363 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
83405305 AGTTGAAAAG
83405315 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
83405334 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
83405351 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
83405364 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:83406251 original size:40 final size:40
Alignment explanation
Indices: 83406185--83406351 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
83406175 AAATTGAATG
* * *
83406185 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
83406224 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
83406264 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
83406304 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
83406344 ATATCCGG
1 ATATCCGG
83406352 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83413353 original size:17 final size:18
Alignment explanation
Indices: 83413311--83413359 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
83413301 AGTTGAAAAG
83413311 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
83413330 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
83413347 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
83413360 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:83414247 original size:40 final size:39
Alignment explanation
Indices: 83414181--83414346 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
83414171 AAATTGAATG
* * *
83414181 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
83414220 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
83414259 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
83414299 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
83414339 ATATCCGG
1 ATATCCGG
83414347 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:83417591 original size:17 final size:18
Alignment explanation
Indices: 83417549--83417597 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
83417539 AGTTGAAAAG
83417549 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
83417568 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
83417585 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
83417598 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:83418485 original size:40 final size:40
Alignment explanation
Indices: 83418419--83418585 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
83418409 AAATTGAATG
* * *
83418419 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
83418458 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
83418498 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
83418538 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
83418578 ATATCCGG
1 ATATCCGG
83418586 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83424969 original size:12 final size:12
Alignment explanation
Indices: 83424952--83424976 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83424942 GGGTGGTTTC
83424952 GTGGCCACACGG
1 GTGGCCACACGG
83424964 GTGGCCACACGG
1 GTGGCCACACGG
83424976 G
1 G
83424977 CGTGTGCCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (12 bp):
GTGGCCACACGG
Found at i:83427013 original size:23 final size:22
Alignment explanation
Indices: 83426987--83427033 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
83426977 GCAATAACAT
* * *
83426987 TTGTAGTATTTATGTACATATAC
1 TTGTACTAATTATATACAT-TAC
83427010 TTGTACTAATTATATACATTAC
1 TTGTACTAATTATATACATTAC
83427032 TT
1 TT
83427034 ATTATTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.49
Consensus pattern (22 bp):
TTGTACTAATTATATACATTAC
Found at i:83427399 original size:25 final size:25
Alignment explanation
Indices: 83427369--83427418 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
83427359 GAATTTCAAG
83427369 TTAGAATTGAGAAAATGATTCGATT
1 TTAGAATTGAGAAAATGATTCGATT
*
83427394 TTAGAATTGAGAAAATGATTGGATT
1 TTAGAATTGAGAAAATGATTCGATT
83427419 GTAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.22, T:0.36
Consensus pattern (25 bp):
TTAGAATTGAGAAAATGATTCGATT
Found at i:83431153 original size:18 final size:18
Alignment explanation
Indices: 83431120--83431156 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
83431110 TTATAAGATG
**
83431120 TTATAAATTGGTTTAAAT
1 TTATAAATTGAATTAAAT
83431138 TTATAAATTGAATTAAAT
1 TTATAAATTGAATTAAAT
83431156 T
1 T
83431157 ATCATATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (18 bp):
TTATAAATTGAATTAAAT
Found at i:83434312 original size:28 final size:29
Alignment explanation
Indices: 83434280--83434378 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
83434270 ATAATAAGCC
*
83434280 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
83434308 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
83434336 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
83434365 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83434379 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:83441083 original size:40 final size:40
Alignment explanation
Indices: 83440956--83441085 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
83440946 ATGCTGGAAA
* *
83440956 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
83440996 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
83441036 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
83441076 TTATATCCGG
1 TTATATCCGG
83441086 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:83445371 original size:28 final size:28
Alignment explanation
Indices: 83445302--83445373 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
83445292 AATAAGCCCG
* *
83445302 CACACTTAGTGCT-TAATAGTCGAACTCA
1 CACACTTAGTGCTAT-ATAATCAAACTCA
83445330 CACACTTAGTGCTATATAATCAAACTCA
1 CACACTTAGTGCTATATAATCAAACTCA
83445358 CACACTTAGTGCTATA
1 CACACTTAGTGCTATA
83445374 CAACTTGAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCA
Found at i:83450710 original size:27 final size:28
Alignment explanation
Indices: 83450654--83450723 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
83450644 AAATTTGTAC
83450654 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
83450682 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
83450709 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
83450724 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:83457633 original size:7 final size:7
Alignment explanation
Indices: 83457621--83457645 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
83457611 GTTGTCTTCT
83457621 TGTTTGA
1 TGTTTGA
83457628 TGTTTGA
1 TGTTTGA
83457635 TGTTTGA
1 TGTTTGA
83457642 TGTT
1 TGTT
83457646 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:83458571 original size:27 final size:28
Alignment explanation
Indices: 83458515--83458584 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
83458505 AAATTTGTAC
83458515 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
83458543 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
83458570 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
83458585 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:83464919 original size:2 final size:2
Alignment explanation
Indices: 83464912--83464940 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83464902 CTTAGCATAT
83464912 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
83464941 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:83478297 original size:27 final size:27
Alignment explanation
Indices: 83478267--83478420 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
83478257 ATAGTGAATC
83478267 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
83478294 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
83478322 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
83478349 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
83478378 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
83478407 TGCACACTTAGTGC
1 CGCACACTTAGTGC
83478421 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:83478314 original size:29 final size:28
Alignment explanation
Indices: 83478267--83478420 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
83478257 ATAGTGAATC
83478267 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
83478294 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
83478322 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
83478349 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
83478378 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
83478407 TGCACACTTAGTGC
1 CGCACACTTAGTGC
83478421 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:83478338 original size:55 final size:55
Alignment explanation
Indices: 83478267--83478370 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
83478257 ATAGTGAATC
83478267 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
83478322 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
83478371 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:83485123 original size:11 final size:12
Alignment explanation
Indices: 83485096--83485124 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83485086 CATGTACTGT
83485096 CACATGGCGTAC
1 CACATGGCGTAC
83485108 CACATGGCGT-C
1 CACATGGCGTAC
83485119 CACATG
1 CACATG
83485125 CCCGAACCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.17
Consensus pattern (12 bp):
CACATGGCGTAC
Found at i:83485903 original size:14 final size:14
Alignment explanation
Indices: 83485884--83485913 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83485874 CCTCTCAGGG
*
83485884 TTTTTCTTTTGTTC
1 TTTTTCTTTTCTTC
83485898 TTTTTCTTTTCTTC
1 TTTTTCTTTTCTTC
83485912 TT
1 TT
83485914 GGGGAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (14 bp):
TTTTTCTTTTCTTC
Found at i:83498473 original size:38 final size:38
Alignment explanation
Indices: 83498422--83498499 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
83498412 GTTATTTGAA
83498422 TAGCATATGCATGAGGGTAATCTTTTAGGTGATATGTT
1 TAGCATATGCATGAGGGTAATCTTTTAGGTGATATGTT
83498460 TAGCATATGCATGAGGGTAATCTTTTAGGTGATATGTT
1 TAGCATATGCATGAGGGTAATCTTTTAGGTGATATGTT
83498498 TA
1 TA
83498500 TTCTATTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.08, G:0.26, T:0.40
Consensus pattern (38 bp):
TAGCATATGCATGAGGGTAATCTTTTAGGTGATATGTT
Found at i:83503671 original size:29 final size:28
Alignment explanation
Indices: 83503604--83503681 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 28
83503594 GGTTAGGTTA
* *
83503604 TTTTTATTTTAGGGATTTTTCTTTAGGG
1 TTTTTATTTTTGGGATTTTTCTCTAGGG
*
83503632 TTTTTCAATTTTTGGGATTTTTGTCTAGGG
1 TTTTT--ATTTTTGGGATTTTTCTCTAGGG
83503662 TTTTTGA-TTTTGGGATTTTT
1 TTTTT-ATTTTTGGGATTTTT
83503682 ATTTTTTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 18 0.41
29 1 0.02
30 25 0.57
ACGTcount: A:0.13, C:0.04, G:0.22, T:0.62
Consensus pattern (28 bp):
TTTTTATTTTTGGGATTTTTCTCTAGGG
Found at i:83504766 original size:33 final size:33
Alignment explanation
Indices: 83504687--83504767 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 33
83504677 TTAAATAGGA
* ** *
83504687 AGGGTGCTAAGGTAACTAGCAGTAAAGGTGGTG
1 AGGGTGCTGAGGTTGCTAACAGTAAAGGTGGTG
*
83504720 AGGGTACTGAGGTTGCTAACAGTAAAGGTGGTG
1 AGGGTGCTGAGGTTGCTAACAGTAAAGGTGGTG
83504753 AGGGTGCTGAGGTTG
1 AGGGTGCTGAGGTTG
83504768 AAAGTGGTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.26, C:0.09, G:0.42, T:0.23
Consensus pattern (33 bp):
AGGGTGCTGAGGTTGCTAACAGTAAAGGTGGTG
Found at i:83506318 original size:31 final size:31
Alignment explanation
Indices: 83506280--83506340 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
83506270 TAAATAATAA
83506280 TATTTATTTTGCACCAATTGATTACTGATGC
1 TATTTATTTTGCACCAATTGATTACTGATGC
* *
83506311 TATTTATTTTGCACGAATTTATTACTGATG
1 TATTTATTTTGCACCAATTGATTACTGATG
83506341 TTTTGTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (31 bp):
TATTTATTTTGCACCAATTGATTACTGATGC
Found at i:83508629 original size:31 final size:31
Alignment explanation
Indices: 83508594--83508652 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
83508584 ATGAAACCTA
83508594 AAATAAATTGGCTAAATATATGCTTACCCTG
1 AAATAAATTGGCTAAATATATGCTTACCCTG
83508625 AAATAAATTGGCTAAATATATGCTTACC
1 AAATAAATTGGCTAAATATATGCTTACC
83508653 TAAAAATCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (31 bp):
AAATAAATTGGCTAAATATATGCTTACCCTG
Found at i:83515633 original size:7 final size:7
Alignment explanation
Indices: 83515623--83515655 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
83515613 CATGTACCAT
83515623 TTTTTTC
1 TTTTTTC
83515630 TTTTTTC
1 TTTTTTC
*
83515637 TTTTTTT
1 TTTTTTC
83515644 TTTTTTC
1 TTTTTTC
83515651 TTTTT
1 TTTTT
83515656 ACCTTGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTTC
Found at i:83516346 original size:44 final size:44
Alignment explanation
Indices: 83516296--83516411 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
83516286 CCCAGATAGT
** *
83516296 GTCTTACTCGTGCACATATATCGAAATCACATATAGTTGACATG
1 GTCTTACTCGCACACATATATCGAAATCACATATAGATGACATG
* * *
83516340 GTCTTACTCGCACACATATATCGAAATAACATATCGATGCCATG
1 GTCTTACTCGCACACATATATCGAAATCACATATAGATGACATG
83516384 GTCTTACTCGCACACATATATCGAAATC
1 GTCTTACTCGCACACATATATCGAAATC
83516412 CTATGCCATG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (44 bp):
GTCTTACTCGCACACATATATCGAAATCACATATAGATGACATG
Found at i:83518276 original size:15 final size:15
Alignment explanation
Indices: 83518256--83518286 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83518246 CAAAGATTTC
83518256 AGTGTGATGGAGTTG
1 AGTGTGATGGAGTTG
83518271 AGTGTGATGGAGTTG
1 AGTGTGATGGAGTTG
83518286 A
1 A
83518287 TCTGCCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.45, T:0.32
Consensus pattern (15 bp):
AGTGTGATGGAGTTG
Found at i:83520174 original size:26 final size:26
Alignment explanation
Indices: 83520145--83520196 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
83520135 TTTGAATGTA
83520145 AGCATGAAATATAACTTAGTGCATGC
1 AGCATGAAATATAACTTAGTGCATGC
83520171 AGCATGAAATATAACTTAGTGCATGC
1 AGCATGAAATATAACTTAGTGCATGC
83520197 TTCGTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (26 bp):
AGCATGAAATATAACTTAGTGCATGC
Found at i:83526605 original size:2 final size:2
Alignment explanation
Indices: 83526598--83526623 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
83526588 TGACTAGAGA
83526598 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
83526624 GGTGTTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83527183 original size:39 final size:39
Alignment explanation
Indices: 83527140--83527355 Score: 317
Period size: 39 Copynumber: 5.5 Consensus size: 39
83527130 TAATGGAGAA
* *
83527140 TTATATTCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
83527179 TTATATCCGGCCTAAGTTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
83527218 TTATATCTGGGCTAAGTCCCAAAGGCATTCGTGCGGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
83527257 TTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
83527296 TTATATCCGGGCTAAG-CCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
83527334 TTATATCCGGGCTTAAAGTCCC
1 TTATATCCGGGC-T-AAGTCCC
83527356 ACATGCTTTT
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 32 0.20
39 120 0.76
40 3 0.02
41 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:83530090 original size:11 final size:11
Alignment explanation
Indices: 83530074--83530098 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83530064 ATTAGTGAAC
83530074 GAAATAGAATG
1 GAAATAGAATG
83530085 GAAATAGAATG
1 GAAATAGAATG
83530096 GAA
1 GAA
83530099 TTTGAAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16
Consensus pattern (11 bp):
GAAATAGAATG
Found at i:83533841 original size:39 final size:39
Alignment explanation
Indices: 83533787--83533915 Score: 224
Period size: 39 Copynumber: 3.3 Consensus size: 39
83533777 AAATGGAGAA
*
83533787 TTATATCCGTGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
83533826 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
83533865 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
83533903 TTATATCCGGGCT
1 TTATATCCGGGCT
83533916 TAAAGTCTCG
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 13 0.15
39 73 0.85
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:83536637 original size:22 final size:21
Alignment explanation
Indices: 83536609--83536650 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83536599 GATTTGGTTG
83536609 TAAAATGGTTAAGAATTTGATA
1 TAAAAT-GTTAAGAATTTGATA
**
83536631 TAAAATGTTGTGAATTTGAT
1 TAAAATGTTAAGAATTTGAT
83536651 GCTTGTAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (21 bp):
TAAAATGTTAAGAATTTGATA
Found at i:83541686 original size:30 final size:32
Alignment explanation
Indices: 83541635--83541714 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 32
83541625 AGCTGTTATA
** *
83541635 TAATTGAATTTTGCCATCAAACTTTGA-AT-TT
1 TAATTGAATTTTATCACCAAAC-TTGATATGTT
*
83541666 T-ATTGAATTTTATCACCAAACTTGATTTGTT
1 TAATTGAATTTTATCACCAAACTTGATATGTT
*
83541697 TAATTAAATTTTATCACC
1 TAATTGAATTTTATCACC
83541715 CAATATTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 4 0.10
30 18 0.44
31 4 0.10
32 15 0.37
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (32 bp):
TAATTGAATTTTATCACCAAACTTGATATGTT
Found at i:83542351 original size:28 final size:28
Alignment explanation
Indices: 83542291--83542353 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
83542281 TCCCATAGTA
*
83542291 ATGGAGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
83542319 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
83542347 ATGGGGT
1 ATGGGGT
83542354 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:83547655 original size:28 final size:28
Alignment explanation
Indices: 83547624--83547686 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
83547614 TCCCATATTA
83547624 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
83547652 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
83547680 ATGGGGT
1 ATGGGGT
83547687 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:83558101 original size:2 final size:2
Alignment explanation
Indices: 83558094--83558122 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83558084 TCCATGCCAA
83558094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83558123 AATCATATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83564855 original size:223 final size:222
Alignment explanation
Indices: 83564420--83564867 Score: 745
Period size: 223 Copynumber: 2.0 Consensus size: 222
83564410 TCCCAACTTT
83564420 TAGCTTATGATTGCTCTCTATAGGTGATTCTACTAGTTTACATCCCATTATACCAGTTTTTGCCA
1 TAGCTTATGATTGCTCTCTATAGGTGATTCTACTAGTTTACATCCCATTATACCAGTTTTTGCCA
* * * * *
83564485 AGAGATCTAGGATATACTTTTTTTGAGAACTGAAGATCATTTTTTTCTAATCTAGTAACTTCAAT
66 AGAGATCCAAGATATACTTTCTTTGAGAAATGAAGATCATTTTTTTCTAATCTAGCAACTTCAAT
*
83564550 TCCCAAAAAACATTTCAGCTTTCCAAGATCTTTGATTTCAAATTTCTGAGTCAACAATCTCTTTA
131 TCCCAAAAAACATTTCAGCTTTCCAAGATCCTTGATTTCAAATTTCTGAGTCAACAATCTCTTTA
*
83564615 GTTTAAGCATTTCTTCTCTTCCATCAC
196 GTTGAAGCATTTCTTCTCTTCCATCAC
* *
83564642 TAGCTTATGATTGTTCTCTATAGGTGATTCTACTAGTTTACATCCCATTATACTAGTTTTTGCCA
1 TAGCTTATGATTGCTCTCTATAGGTGATTCTACTAGTTTACATCCCATTATACCAGTTTTTGCCA
*
83564707 AGGGATCCAAGATATACTTTCTTTGAGAAATGAAGATCATTTTTTTTCTAATCTAGCAACTTCAA
66 AGAGATCCAAGATATACTTTCTTTGAGAAATGAAGATCA-TTTTTTTCTAATCTAGCAACTTCAA
* * *
83564772 TTCCCAAAAAATATTTCAGCTTTCCAAGATCCTTGATTTCAAATTTTTTAGTCAACAATCTCTTT
130 TTCCCAAAAAACATTTCAGCTTTCCAAGATCCTTGATTTCAAATTTCTGAGTCAACAATCTCTTT
*
83564837 AGTTG-AGACATTTCTTCTCTTTCATCAC
195 AGTTGAAG-CATTTCTTCTCTTCCATCAC
83564865 TAG
1 TAG
83564868 TCATTACAAT
Statistics
Matches: 210, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
222 99 0.47
223 111 0.53
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (222 bp):
TAGCTTATGATTGCTCTCTATAGGTGATTCTACTAGTTTACATCCCATTATACCAGTTTTTGCCA
AGAGATCCAAGATATACTTTCTTTGAGAAATGAAGATCATTTTTTTCTAATCTAGCAACTTCAAT
TCCCAAAAAACATTTCAGCTTTCCAAGATCCTTGATTTCAAATTTCTGAGTCAACAATCTCTTTA
GTTGAAGCATTTCTTCTCTTCCATCAC
Found at i:83571913 original size:6 final size:6
Alignment explanation
Indices: 83571898--83571932 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
83571888 AGAGAAGGGA
*
83571898 TTGGTT TTGGTG TTGGTG TTGGTG TTGGTG TTGGT
1 TTGGTG TTGGTG TTGGTG TTGGTG TTGGTG TTGGT
83571933 AATGAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (6 bp):
TTGGTG
Found at i:83573019 original size:11 final size:11
Alignment explanation
Indices: 83573003--83573043 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
83572993 TTTAATTGAA
83573003 TTTTTATAGTT
1 TTTTTATAGTT
*
83573014 TTTTTAGGTAATT
1 TTTTTA--TAGTT
83573027 TTTTTATAGTT
1 TTTTTATAGTT
83573038 TTTTTA
1 TTTTTA
83573044 GAATTTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 16 0.62
13 10 0.38
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.71
Consensus pattern (11 bp):
TTTTTATAGTT
Found at i:83579053 original size:29 final size:29
Alignment explanation
Indices: 83579011--83579069 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
83579001 GACTCTAATG
83579011 TAAGCAAGCTATATTTCTCTTTCAATATT
1 TAAGCAAGCTATATTTCTCTTTCAATATT
83579040 TAAGCAAGCTATATTTCTCTTTCAATATT
1 TAAGCAAGCTATATTTCTCTTTCAATATT
83579069 T
1 T
83579070 CCTATATGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.46
Consensus pattern (29 bp):
TAAGCAAGCTATATTTCTCTTTCAATATT
Found at i:83580066 original size:2 final size:2
Alignment explanation
Indices: 83580059--83580086 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
83580049 AAAGGTTGTT
83580059 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83580087 ACTATCTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:83594404 original size:39 final size:39
Alignment explanation
Indices: 83594322--83594410 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
83594312 TTTAGATAGC
* * *
83594322 CTTCGGGCTTCCGTTTAGCACTTGTGTGCTTCAATTAGT
1 CTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAACTAGA
** *
83594361 CTTCGGGCTTTTGTTTAGCACTTATGTGCTTCAGCTAGA
1 CTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAACTAGA
*
83594400 CTTCGAGCTTC
1 CTTCGGGCTTC
83594411 AGATCACGAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (39 bp):
CTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAACTAGA
Found at i:83595099 original size:3 final size:3
Alignment explanation
Indices: 83595091--83595133 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
83595081 TTGAGTTTTT
83595091 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
83595134 ATATAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83597683 original size:2 final size:2
Alignment explanation
Indices: 83597672--83597700 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
83597662 TTATGTTATT
83597672 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83597701 ATGGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:83607858 original size:20 final size:20
Alignment explanation
Indices: 83607833--83607872 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
83607823 TGGCAGTTCA
83607833 ATTAGATTTTAAGTACCAAC
1 ATTAGATTTTAAGTACCAAC
*
83607853 ATTAGATTTTAAGTGCCAAC
1 ATTAGATTTTAAGTACCAAC
83607873 TTGAATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (20 bp):
ATTAGATTTTAAGTACCAAC
Found at i:83609563 original size:43 final size:42
Alignment explanation
Indices: 83609502--83609596 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 42
83609492 TTAAAAAGGC
* *
83609502 CGCTAAAGGTTATAGCCTTTAGCGGCGCTCTTCCCACAAACGA
1 CGCTAAAGGTCATAGCCTTTAGCGGCGCT-TTCCCAAAAACGA
* * *
83609545 CGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCCAAAAACGC
1 CGCTAAAGGTCATAGCCTTTAGCGGCGCTTTCCCAAAAACGA
83609587 CGCTAAAGGT
1 CGCTAAAGGT
83609597 TATAAAATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 20 0.43
43 27 0.57
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (42 bp):
CGCTAAAGGTCATAGCCTTTAGCGGCGCTTTCCCAAAAACGA
Found at i:83613775 original size:2 final size:2
Alignment explanation
Indices: 83613768--83613796 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83613758 AAACCATTTA
83613768 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83613797 AAGTTTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83614138 original size:25 final size:25
Alignment explanation
Indices: 83614030--83614140 Score: 72
Period size: 25 Copynumber: 4.6 Consensus size: 25
83614020 AAACCCTAAA
* * *
83614030 TCATAATCCTTAAACCCATAATTTA-
1 TCATAAACCTTAAA-CCATAGTTAAC
*
83614055 TCATAAACCTTCAAA-TACTAGTTAAC
1 TCATAAACCTT-AAACCA-TAGTTAAC
* * *
83614081 TCCTAAAACTTAAACCCTA---AAC
1 TCATAAACCTTAAACCATAGTTAAC
* *
83614103 T-ATATATCTTAAACCATAGTTAAC
1 TCATAAACCTTAAACCATAGTTAAC
83614127 TCATAAACCTTAAA
1 TCATAAACCTTAAA
83614141 TCTTAAACCA
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
21 13 0.20
22 4 0.06
24 5 0.08
25 30 0.47
26 12 0.19
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (25 bp):
TCATAAACCTTAAACCATAGTTAAC
Found at i:83614465 original size:40 final size:41
Alignment explanation
Indices: 83614345--83614506 Score: 231
Period size: 41 Copynumber: 4.0 Consensus size: 41
83614335 TTTTACCGGC
83614345 ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT
1 ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT
*
83614386 ACCAAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTT
1 ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT
* *
83614427 ACCAAAAGCGCTGCTAATGCTCT-GTTTTTAACGGCGTTTTT
1 ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCG-TTTT
*** *
83614468 GGTAAAA-CGCCGCTATTGCTCT-GTTTTTAGCGGCGTTTT
1 ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT
83614507 TGATAAAACG
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.04
40 37 0.34
41 69 0.63
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35
Consensus pattern (41 bp):
ACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT
Found at i:83614549 original size:28 final size:28
Alignment explanation
Indices: 83614511--83614565 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
83614501 CGTTTTTGAT
83614511 AAAACGACGCTATTGCTCTGTATTTTAA
1 AAAACGACGCTATTGCTCTGTATTTTAA
*
83614539 AAAACGCCGCTATTGCTCTGTATTTTA
1 AAAACGACGCTATTGCTCTGTATTTTA
83614566 CAATTTTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (28 bp):
AAAACGACGCTATTGCTCTGTATTTTAA
Found at i:83615406 original size:3 final size:3
Alignment explanation
Indices: 83615398--83615438 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
83615388 TGTTCTATTT
83615398 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
83615439 TTTTTCATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:83622689 original size:39 final size:39
Alignment explanation
Indices: 83622623--83622701 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
83622613 ACGAGTATTA
* * *
83622623 TAATCAAATTGAGACTAAAGTGAGAACTTAGAGAATTTT
1 TAATCAAATCGAGACTAAAGTGAGAACTCAAAGAATTTT
* *
83622662 TAATCAAATCGGGACTAAA-TCGGGAACTCAAAGAATTTT
1 TAATCAAATCGAGACTAAAGT-GAGAACTCAAAGAATTTT
83622701 T
1 T
83622702 TACGAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (39 bp):
TAATCAAATCGAGACTAAAGTGAGAACTCAAAGAATTTT
Found at i:83622783 original size:21 final size:21
Alignment explanation
Indices: 83622759--83622813 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
83622749 TGGTCCAAGG
*
83622759 GACACGCCTGTGTGACCCTAA
1 GACACGCCCGTGTGACCCTAA
83622780 GACACGCCCGTGTGACCCTAA
1 GACACGCCCGTGTGACCCTAA
83622801 GACACGCCCGTGT
1 GACACGCCCGTGT
83622814 TGTAGGCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.16
Consensus pattern (21 bp):
GACACGCCCGTGTGACCCTAA
Found at i:83625144 original size:441 final size:441
Alignment explanation
Indices: 83624322--83625203 Score: 1721
Period size: 441 Copynumber: 2.0 Consensus size: 441
83624312 TGCGCAGAAT
*
83624322 AACATGTTTGCTTGAAACATTTCAATTCAATTCCATACCCAACAAGCATTACATTGAGACTAGTC
1 AACATGTTTGCCTGAAACATTTCAATTCAATTCCATACCCAACAAGCATTACATTGAGACTAGTC
83624387 ATATATATATATATACACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATA
66 ATATATATATATATACACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATA
83624452 TCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATATATTTATT
131 TCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATATATTTATT
* *
83624517 TTCCTCCTCCTCCTCTCCATTCCACATCTTTAATGTATATAGCATTCTTGTTAGTACGATTTCAC
196 TTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAGCATTCTTGTAAGTACGATTTCAC
83624582 AATTTACTAATAAATGTTCACATCAAACTGTCCACACGAGTCATAGCACTTAATTATTTATAATT
261 AATTTACTAATAAATGTTCACATCAAACTGTCCACACGAGTCATAGCACTTAATTATTTATAATT
83624647 CGAGCTACAGAGCTCCAAATTAAGATCCGTAAATTTCCCCTGAAACTAGACTCACATATCTTTCC
326 CGAGCTACAGAGCTCCAAATTAAGATCCGTAAATTTCCCCTGAAACTAGACTCACATATCTTTCC
83624712 ACCATAAAATTTTCATAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCA
391 ACCATAAAATTTTCATAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCA
83624763 AACATGTTTGCCTGAAACATTTCAATTCAATTCCATACCCAACAAGCATTACATTGAGACTAGTC
1 AACATGTTTGCCTGAAACATTTCAATTCAATTCCATACCCAACAAGCATTACATTGAGACTAGTC
83624828 ATATATATATATATACACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATA
66 ATATATATATATATACACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATA
83624893 TCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATATATTTATT
131 TCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATATATTTATT
83624958 TTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAGCATTCTTGTAAGTACGATTTCAC
196 TTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAGCATTCTTGTAAGTACGATTTCAC
83625023 AATTTACTAATAAATGTTCACATCAAACTGTCCACACGAGTCATAGTCACTTAATTATTTATAAT
261 AATTTACTAATAAATGTTCACATCAAACTGTCCACACGAGTCATAG-CACTTAATTATTTATAAT
83625088 TCGAGCTACAGAGCTCCAAATTAAGATCCGTAAATTT-CCCTGAAACTAGACTCACATATCTTTC
325 TCGAGCTACAGAGCTCCAAATTAAGATCCGTAAATTTCCCCTGAAACTAGACTCACATATCTTTC
83625152 CACCATAAAATTTTCATAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCA
390 CACCATAAAATTTTCATAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCA
83625204 TTAAAATTTC
Statistics
Matches: 437, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
441 382 0.87
442 55 0.13
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (441 bp):
AACATGTTTGCCTGAAACATTTCAATTCAATTCCATACCCAACAAGCATTACATTGAGACTAGTC
ATATATATATATATACACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATA
TCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATATATTTATT
TTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAGCATTCTTGTAAGTACGATTTCAC
AATTTACTAATAAATGTTCACATCAAACTGTCCACACGAGTCATAGCACTTAATTATTTATAATT
CGAGCTACAGAGCTCCAAATTAAGATCCGTAAATTTCCCCTGAAACTAGACTCACATATCTTTCC
ACCATAAAATTTTCATAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCA
Found at i:83635613 original size:37 final size:37
Alignment explanation
Indices: 83635563--83635637 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
83635553 ATCTTTAGCT
* *
83635563 CAGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
83635600 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
83635637 C
1 C
83635638 GGAATACATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:83635756 original size:48 final size:48
Alignment explanation
Indices: 83635685--83636310 Score: 993
Period size: 48 Copynumber: 13.0 Consensus size: 48
83635675 TGTTACAACA
* * *
83635685 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
83635733 TTCACATTCGTCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
83635781 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83635829 TTCACATTAGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
83635877 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83635925 TTCACATTCA-CCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCACACATATAT
83635973 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83636021 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
83636069 TTCACATTCGCCATTTGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
83636117 TTCACATTGGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
83636165 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83636213 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
83636261 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83636309 TT
1 TT
83636311 ATCTTGTACA
Statistics
Matches: 538, Mismatches: 38, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
47 1 0.00
48 536 1.00
49 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:83639451 original size:23 final size:22
Alignment explanation
Indices: 83639404--83639457 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
83639394 TAAGGATGTG
*
83639404 TAATGCTTCCTTTAATTGATGA
1 TAATGCTTCCTTTAATTGAAGA
*
83639426 TAATAGCTTCTTTTAA-TGAAGAA
1 TAAT-GCTTCCTTTAATTGAAG-A
83639449 TAATG-TTCC
1 TAATGCTTCC
83639458 CCCTTATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.11
22 9 0.33
23 15 0.56
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (22 bp):
TAATGCTTCCTTTAATTGAAGA
Found at i:83639623 original size:27 final size:30
Alignment explanation
Indices: 83639579--83639634 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
83639569 CAAACATATT
83639579 AAACACATTTTAAACACTT-A-TTAAATACA
1 AAACACA-TTTAAACACTTAACTTAAATACA
83639608 AAACACA-TTAAACACTTAACTTAAATA
1 AAACACATTTAAACACTTAACTTAAATA
83639635 AATGAACTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 10 0.40
28 1 0.04
29 14 0.56
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (30 bp):
AAACACATTTAAACACTTAACTTAAATACA
Found at i:83641837 original size:21 final size:22
Alignment explanation
Indices: 83641813--83641860 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
83641803 TTTTATTTCC
* *
83641813 TTTTCTTTTTCT-TCCATGTCT
1 TTTTCTTCTTCTCTCAATGTCT
*
83641834 TTTT-TTCTTCTCTCAATTTCT
1 TTTTCTTCTTCTCTCAATGTCT
83641855 TTTTCT
1 TTTTCT
83641861 CGCTTCCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.27
21 15 0.68
22 1 0.05
ACGTcount: A:0.06, C:0.23, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTCTTCTTCTCTCAATGTCT
Found at i:83643881 original size:10 final size:11
Alignment explanation
Indices: 83643865--83643916 Score: 63
Period size: 10 Copynumber: 4.7 Consensus size: 11
83643855 GACACCTGCA
83643865 ATTAAACACAT
1 ATTAAACACAT
83643876 -TTAAACAAACAT
1 ATTAAAC--ACAT
83643888 ATTAAACACAT
1 ATTAAACACAT
*
83643899 -TTAAACACTT
1 ATTAAACACAT
83643909 ATTAAACA
1 ATTAAACA
83643917 TAAAACACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 15 0.42
11 11 0.31
12 4 0.11
13 6 0.17
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (11 bp):
ATTAAACACAT
Found at i:83643913 original size:21 final size:22
Alignment explanation
Indices: 83643865--83643916 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 22
83643855 GACACCTGCA
83643865 ATTAAACACATTTAAACAAACAT
1 ATTAAACACATTTAAAC-AACAT
*
83643888 ATTAAACACATTTAAAC-ACTT
1 ATTAAACACATTTAAACAACAT
83643909 ATTAAACA
1 ATTAAACA
83643917 TAAAACACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 11 0.39
23 17 0.61
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (22 bp):
ATTAAACACATTTAAACAACAT
Found at i:83643929 original size:27 final size:29
Alignment explanation
Indices: 83643882--83643936 Score: 87
Period size: 27 Copynumber: 1.9 Consensus size: 29
83643872 ACATTTAAAC
83643882 AAACATATTAAACACATTTAAACACTTATT
1 AAACATA-TAAACACATTTAAACACTTATT
83643912 AAACATA-AAACACA-TTAAACACTTA
1 AAACATATAAACACATTTAAACACTTA
83643937 ACTTAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 11 0.44
28 7 0.28
30 7 0.28
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (29 bp):
AAACATATAAACACATTTAAACACTTATT
Found at i:83644680 original size:17 final size:17
Alignment explanation
Indices: 83644658--83644690 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
83644648 GGGGCAATCT
83644658 AACCTAGTATAACATCC
1 AACCTAGTATAACATCC
83644675 AACCTAGTATAACATC
1 AACCTAGTATAACATC
83644691 TAAGCTCAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.24
Consensus pattern (17 bp):
AACCTAGTATAACATCC
Found at i:83651385 original size:22 final size:22
Alignment explanation
Indices: 83651360--83651401 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
83651350 TGCATGATAA
*
83651360 CTCCATCCAACCCTGCACTTGC
1 CTCCATCCAACCCTACACTTGC
* *
83651382 CTCCGTCCATCCCTACACTT
1 CTCCATCCAACCCTACACTT
83651402 CCTGTGGGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.50, G:0.07, T:0.26
Consensus pattern (22 bp):
CTCCATCCAACCCTACACTTGC
Found at i:83657182 original size:2 final size:2
Alignment explanation
Indices: 83657175--83657205 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
83657165 TATTATGTAT
83657175 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83657206 GTTATAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83657363 original size:75 final size:75
Alignment explanation
Indices: 83657236--83657388 Score: 229
Period size: 75 Copynumber: 2.0 Consensus size: 75
83657226 CAGTTGCCCC
* ** *
83657236 ATAATTTTTTGATGTCATAGGAAACAGGTTGACAATATGTTTGCAATGTGTTGACTGCTTCTATT
1 ATAATTTTTTGATGTCATAGGAAACAGGTTGACAACATGTTCACAATGTGTTGACTACTTCTATT
83657301 AGGATTTTGT
66 AGGATTTTGT
*
83657311 ATAATTTTTTGATGTCAT-GTGAAACAGGTTGACAACATGTTCACAACT-TGTTGACTACTTTTA
1 ATAATTTTTTGATGTCATAG-GAAACAGGTTGACAACATGTTCACAA-TGTGTTGACTACTTCTA
83657374 TTAGGATTTTGT
64 TTAGGATTTTGT
83657386 ATA
1 ATA
83657389 TAAATTACTA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
74 1 0.01
75 69 0.97
76 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.42
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATAGGAAACAGGTTGACAACATGTTCACAATGTGTTGACTACTTCTATT
AGGATTTTGT
Found at i:83657644 original size:36 final size:36
Alignment explanation
Indices: 83657583--83658242 Score: 390
Period size: 35 Copynumber: 18.1 Consensus size: 36
83657573 GAGACAAAGA
* *
83657583 TCTATCCTAACC-TTTTTAAGTTTGCCTTAAACGAG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
* *
83657618 TTTA-CCCTAACCTTTTTTAAGGTTGCCTTAAATGAG
1 TCTATCCC-AACCTTTTTTAAGGTTGCCTTAAACGAG
* * * *
83657654 TTTATCCCAACTTTTTTTAA-ATTGCCTTGGAAAAG-G
1 TCTATCCCAACCTTTTTTAAGGTTGCCTT--AAACGAG
* *
83657690 TCTATCCCAACC-TTTTTAAGGTTGCTTTAAA-TAGG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGA-G
* *
83657725 TCTATCCCAA--TATCTTTAAGGTTGTCTTAAACGAG
1 TCTATCCCAACCT-TTTTTAAGGTTGCCTTAAACGAG
* * * *
83657760 TCAATCCCAACCTTTTTAAAAGTTGCCTTAGATAAGA-
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTA-A-ACGAG
* * * *
83657797 TCTATCCTAACC-TTTTTGAGGTTACCTTAGACGAG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
* * *
83657832 TCTATCCCAACC-TTTTTAAGGTTGCTTTAGACAAG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
* * *
83657867 TCTATCCTAACCTTTTTTTAAGGTTGTCTTAAACAAGG
1 TCTATCCCAACC-TTTTTTAAGGTTGCCTTAAACGA-G
* * * *
83657905 TCTATCCTAA-CTTTTTTAAAAAGTTACCTTAGACTGA-
1 TCTATCCCAACCTTTTTT--AAGGTTGCCTTAAAC-GAG
* ** *
83657942 TCTATCTCAACCTTTTTTAAAGGTTGCCTTAGCCAAGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCCTTAAACGA-G
* * *
83657980 TCTATCCCAA-CTTTGTTAAAAGGTTACCTTAGACTG-G
1 TCTATCCCAACCTTT-TT-TAAGGTTGCCTTAAAC-GAG
* * *
83658017 TCTATCCCAACCTTTTTTAAAAGTTGCCTTAGACAAGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCCTTAAACGA-G
* * * *
83658055 TCTATTCCAACC-TTTTTAAGGTTGCCTTAGACAAT
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
** * * *
83658090 TCTATCCCAATATTTTTTAAAAGTTG-TTATAAACCAGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCCT-TAAACGA-G
* * *
83658128 TCTATCCCAA-CTTTTCTTAAAGGTTGTCTTAGACAGGG
1 TCTATCCCAACCTTTT-TT-AAGGTTGCCTTAAAC-GAG
* ** *
83658166 TCTATCCTAA-CTTTTTTAAAAGGTTATCTTAGACTG-G
1 TCTATCCCAACCTTTTTT--AAGGTTGCCTTAAAC-GAG
* * *
83658203 TCTATCTCAACC-TCTTTAAGGTTGCCTTAGACGAG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
83658238 TCTAT
1 TCTAT
83658243 ACAAATCTTT
Statistics
Matches: 499, Mismatches: 84, Indels: 84
0.75 0.13 0.13
Matches are distributed among these distances:
34 9 0.02
35 127 0.25
36 109 0.22
37 125 0.25
38 127 0.25
39 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (36 bp):
TCTATCCCAACCTTTTTTAAGGTTGCCTTAAACGAG
Found at i:83657775 original size:107 final size:105
Alignment explanation
Indices: 83657578--83657923 Score: 304
Period size: 107 Copynumber: 3.2 Consensus size: 105
83657568 GACATGAGAC
* * * * * * *
83657578 AAAGATCTATCCTAACCTTTTTAAGTTTGCCTTAAACGAGTTTA-CCCTAACCTTTTTTAAGGTT
1 AAAGGTCTATCCTAACCTTTTTAAGGTTACCTTAAAAGAGTCTATCCC-AA-CATCTTTAAGGTT
* *
83657642 GCCTTAAATGAGTTTATCCCAA-CTTTTTTTAAATTGCCTTGGA
64 G-CTTAAACGAGTCTATCCCAACCTTTTTTTAAATTGCCTT-GA
* * * *
83657685 AAAGGTCTATCCCAACCTTTTTAAGGTTGCTTTAAATAG-GTCTATCCCAATATCTTTAAGGTTG
1 AAAGGTCTATCCTAACCTTTTTAAGGTTACCTTAAA-AGAGTCTATCCCAACATCTTTAAGGTTG
* *
83657749 TCTTAAACGAGTCAATCCCAACC-TTTTTAAAAGTTGCCTTAGA
65 -CTTAAACGAGTCTATCCCAACCTTTTTTTAAA-TTGCCTT-GA
* * * * * * *
83657792 TAAGATCTATCCTAACCTTTTTGAGGTTACCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTGC
1 AAAGGTCTATCCTAACCTTTTTAAGGTTACCTTAAAAGAGTCTATCCCAACATCTTTAAGGTTGC
* * * * * *
83657857 TTTAGACAAGTCTATCCTAACCTTTTTTTAAGGTTGTCTTAA
66 -TTAAACGAGTCTATCCCAACCTTTTTTTAA-ATTGCCTTGA
*
83657899 ACAAGGTCTATCCTAACTTTTTTAA
1 A-AAGGTCTATCCTAACCTTTTTAA
83657924 AAAGTTACCT
Statistics
Matches: 192, Mismatches: 38, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
106 38 0.20
107 117 0.61
108 37 0.19
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (105 bp):
AAAGGTCTATCCTAACCTTTTTAAGGTTACCTTAAAAGAGTCTATCCCAACATCTTTAAGGTTGC
TTAAACGAGTCTATCCCAACCTTTTTTTAAATTGCCTTGA
Found at i:83657921 original size:38 final size:37
Alignment explanation
Indices: 83657595--83658242 Score: 415
Period size: 38 Copynumber: 17.8 Consensus size: 37
83657585 TATCCTAACC
* * * * *
83657595 TTTTTAAGTTTGCCTTAAACGA-GTTTA-CCCTAACCT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCC-AACTT
* *
83657631 TTTTTAAGGTTGCCTTA-A-ATGAGTTTATCCCAACTT
1 TTTTTAAGGTTGCCTTAGACAAG-GTCTATCCCAACTT
* * * *
83657667 TTTTTAA-ATTGCCTTGGAAAAGGTCTATCCCAAC-C
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* *
83657702 TTTTTAAGGTTGCTTTA-A-ATAGGTCTATCCCAA-TA
1 TTTTTAAGGTTGCCTTAGACA-AGGTCTATCCCAACTT
* * * * * *
83657737 TCTTTAAGGTTGTCTTAAACGA-GTCAATCCCAACCT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* * * * * *
83657773 TTTTAAAAGTTGCCTTAGATAAGATCTATCCTAAC-C
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* * * *
83657809 TTTTTGAGGTTACCTTAGACGA-GTCTATCCCAAC-C
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* *
83657844 TTTTTAAGGTTGCTTTAGACAA-GTCTATCCTAACCTT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAA-CTT
* * *
83657881 TTTTTAAGGTTGTCTTAAACAAGGTCTATCCTAACTT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* * * * * *
83657918 TTTTAAAAAGTTACCTTAGAC-TGATCTATCTCAACCTT
1 TTTT-TAAGGTTGCCTTAGACAAGGTCTATCCCAA-CTT
* *
83657956 TTTTAAAGGTTGCCTTAGCCAAGGTCTATCCCAACTT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
** * *
83657993 TGTTAAAAGGTTACCTTAGAC-TGGTCTATCCCAACCTT
1 T-TTTTAAGGTTGCCTTAGACAAGGTCTATCCCAA-CTT
* * * *
83658031 TTTTAAAAGTTGCCTTAGACAAGGTCTATTCCAAC-C
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
*
83658067 TTTTTAAGGTTGCCTTAGACAA-TTCTATCCCAA-TAT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACT-T
* * * *
83658103 TTTTTAAAAGTTG-TTATAAACCAGGTCTATCCCAACTT
1 TTTTT-AAGGTTGCCT-TAGACAAGGTCTATCCCAACTT
* * * *
83658141 TTCTTAAAGGTTGTCTTAGACAGGGTCTATCCTAACTT
1 TT-TTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* ** * * *
83658179 TTTTAAAAGGTTATCTTAGAC-TGGTCTATCTCAAC-C
1 TTTT-TAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
* *
83658215 TCTTTAAGGTTGCCTTAGACGA-GTCTAT
1 TTTTTAAGGTTGCCTTAGACAAGGTCTAT
83658243 ACAAATCTTT
Statistics
Matches: 481, Mismatches: 100, Indels: 63
0.75 0.16 0.10
Matches are distributed among these distances:
34 1 0.00
35 120 0.25
36 113 0.23
37 119 0.25
38 124 0.26
39 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
TTTTTAAGGTTGCCTTAGACAAGGTCTATCCCAACTT
Found at i:83657954 original size:75 final size:73
Alignment explanation
Indices: 83657581--83658268 Score: 442
Period size: 75 Copynumber: 9.4 Consensus size: 73
83657571 ATGAGACAAA
* * * *
83657581 GATCTATCCTAACC-TTTTT-AAGTTTGCCTTAAACGA-GTTTA-CCCTAACCTTTTTTAAGGTT
1 GATCTATCC-AACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCC-AACCTTTTTAAAGGTT
*
83657642 GCCTTA-AAT
64 GCCTTAGACT
* * *
83657651 GAGTTTATCCCAACTTTTTTTAAA--TTGCCTTGGAA-AAGGTCTATCCCAACCTTTTT-AAGGT
1 GA-TCTAT-CCAACCTTTTTTAAAGGTTGCCTT-AAACAAGGTCTATCCCAACCTTTTTAAAGGT
* *
83657712 TGCTTTA-AAT
63 TGCCTTAGACT
* * * * * *
83657722 AGGTCTATCCCAA--TATCTTT-AAGGTTGTCTTAAACGA-GTCAATCCCAACCTTTTTAAAAGT
1 -GATCTAT-CCAACCT-TTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTTAAAGGT
83657783 TGCCTTAGA-T
63 TGCCTTAGACT
* * * *
83657793 AAGATCTATCCTAACC-TTTTT-GAGGTTACCTTAGACGA-GTCTATCCCAACCTTTTT-AAGGT
1 --GATCTATCC-AACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTTAAAGGT
*
83657854 TGCTTTAGAC-
63 TGCCTTAGACT
* * * * * *
83657864 AAGTCTATCCTAACCTTTTTTTAAGGTTGTCTTAAACAAGGTCTATCCTAACTTTTTTAAAAAGT
1 GA-TCTATCC-AACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTT-AAAGGT
*
83657929 TACCTTAGACT
63 TGCCTTAGACT
**
83657940 GATCTATCTCAACCTTTTTTAAAGGTTGCCTTAGCCAAGGTCTATCCCAA-CTTTGTTAAAAGGT
1 GATCTATC-CAACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTT-TT-AAAGGT
*
83658004 TACCTTAGACT
63 TGCCTTAGACT
* * * *
83658015 GGTCTATCCCAACCTTTTTTAAAAGTTGCCTTAGACAAGGTCTATTCCAACCTTTTT-AAGGTTG
1 GATCTAT-CCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTTAAAGGTTG
83658079 CCTTAGAC-
65 CCTTAGACT
* ** * * * *
83658087 AATTCTATCCCAATATTTTTTAAAAGTTG-TTATAAACCAGGTCTATCCCAACTTTTCTTAAAGG
1 GA-TCTAT-CCAACCTTTTTTAAAGGTTGCCT-TAAACAAGGTCTATCCCAACCTTT-TTAAAGG
* *
83658151 TTGTCTTAGACAG
62 TTGCCTTAGAC-T
* ** * * * *
83658164 GGTCTATCCTAA-CTTTTTTAAAAGGTTATCTTAGAC-TGGTCTATCTCAACCTCTTT-AAGGTT
1 GATCTATCC-AACCTTTTTT-AAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTTAAAGGTT
83658226 GCCTTAGAC-
64 GCCTTAGACT
* * *
83658235 GAGTCTATACAAATCTTTTTCAAAGGTTGGCCTT
1 GA-TCTAT-CCAACCTTTTTTAAAGGTT-GCCTT
83658269 GATTAGGTTT
Statistics
Matches: 500, Mismatches: 75, Indels: 83
0.76 0.11 0.13
Matches are distributed among these distances:
69 4 0.01
70 37 0.07
71 76 0.15
72 94 0.19
73 103 0.21
74 7 0.01
75 154 0.31
76 24 0.05
77 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (73 bp):
GATCTATCCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATCCCAACCTTTTTAAAGGTTGC
CTTAGACT
Found at i:83658205 original size:37 final size:36
Alignment explanation
Indices: 83657629--83658268 Score: 439
Period size: 37 Copynumber: 17.5 Consensus size: 36
83657619 TTACCCTAAC
*
83657629 CTTTTTT-AAGGTTGCCTTA-A-ATGAGTTTATCCCAA
1 CTTTTTTAAAGGTTGCCTTAGACA-G-GTCTATCCCAA
* *
83657664 CTTTTTTTAAA--TTGCCTTGGAAAAGGTCTATCCCAA
1 C-TTTTTTAAAGGTTGCCTTAG-ACAGGTCTATCCCAA
* * * *
83657700 CCTTTTT-AAGGTTGCTTTAAATAGGTCTATCCCAA
1 CTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA
* * * *
83657735 -TATCTTT-AAGGTTGTCTTAAAC-GAGTCAATCCCAA
1 CT-TTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAA
* * * * *
83657770 CCTTTTTAAAAGTTGCCTTAGATAAGATCTATCCTAA
1 CTTTTTTAAAGGTTGCCTTAGA-CAGGTCTATCCCAA
* * *
83657807 CCTTTTT-GAGGTTACCTTAGAC-GAGTCTATCCCAA
1 CTTTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAA
* * * *
83657842 CCTTTTT-AAGGTTGCTTTAGACAAGTCTATCCTAA
1 CTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA
* * * *
83657877 CCTTTTTTTAAGGTTGTCTTAAACAAGGTCTATCCTAA
1 -CTTTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAA
* * * * *
83657915 CTTTTTTAAAAAGTTACCTTAGACTGATCTATCTCAA
1 CTTTTTT-AAAGGTTGCCTTAGACAGGTCTATCCCAA
*
83657952 CCTTTTTTAAAGGTTGCCTTAGCCAAGGTCTATCCCAA
1 -CTTTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAA
* * *
83657990 CTTTGTTAAAAGGTTACCTTAGACTGGTCTATCCCAA
1 CTTT-TTTAAAGGTTGCCTTAGACAGGTCTATCCCAA
* *
83658027 CCTTTTTTAAAAGTTGCCTTAGACAAGGTCTATTCCAA
1 -CTTTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAA
* **
83658065 CCTTTTT-AAGGTTGCCTTAGACAATTCTATCCCAA
1 CTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA
* * * *
83658100 TATTTTTTAAAAGTTG-TTATAAACCAGGTCTATCCCAA
1 -CTTTTTTAAAGGTTGCCT-TAGA-CAGGTCTATCCCAA
* *
83658138 CTTTTCTTAAAGGTTGTCTTAGACAGGGTCTATCCTAA
1 CTTTT-TTAAAGGTTGCCTTAGACA-GGTCTATCCCAA
** * *
83658176 CTTTTTTAAAAGGTTATCTTAGACTGGTCTATCTCAA
1 CTTTTTT-AAAGGTTGCCTTAGACAGGTCTATCCCAA
* * * *
83658213 CCTCTTT-AAGGTTGCCTTAGAC-GAGTCTATACAAA
1 CTTTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAA
*
83658248 TCTTTTTCAAAGGTTGGCCTT
1 -CTTTTTTAAAGGTT-GCCTT
83658269 GATTAGGTTT
Statistics
Matches: 476, Mismatches: 93, Indels: 69
0.75 0.15 0.11
Matches are distributed among these distances:
34 5 0.01
35 126 0.26
36 75 0.16
37 136 0.29
38 133 0.28
39 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (36 bp):
CTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA
Found at i:83660831 original size:28 final size:28
Alignment explanation
Indices: 83660784--83660837 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
83660774 TAATTTAGCC
*
83660784 ATTTTTTATTTTAA-TATTTTTAATTTA
1 ATTTTTTATTCTAATTATTTTTAATTTA
83660811 ATTTTTATATTCTAACTT-TTTTTAATT
1 ATTTTT-TATTCTAA-TTATTTTTAATT
83660838 CTAGCAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.26
28 7 0.30
29 9 0.39
30 1 0.04
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.69
Consensus pattern (28 bp):
ATTTTTTATTCTAATTATTTTTAATTTA
Found at i:83660838 original size:16 final size:15
Alignment explanation
Indices: 83660785--83660840 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
83660775 AATTTAGCCA
*
83660785 TTTTTT-ATTTTAAT
1 TTTTTTAATTCTAAT
*
83660799 ATTTTTAATT-TAAT
1 TTTTTTAATTCTAAT
*
83660813 TTTTAT-ATTCTAACT
1 TTTTTTAATTCTAA-T
83660828 TTTTTTAATTCTA
1 TTTTTTAATTCTA
83660841 GCAACCATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
14 16 0.47
15 9 0.26
16 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTTAATTCTAAT
Found at i:83663109 original size:30 final size:31
Alignment explanation
Indices: 83663069--83663128 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
83663059 GGATCTTGTC
83663069 CCCTTAAAAA-TATTAAAATTAT-AGATAAAT
1 CCCTTAAAAATTA-TAAAATTATAAGATAAAT
*
83663099 CCCTTCAAAATTATAAAATTATAAGATAAA
1 CCCTTAAAAATTATAAAATTATAAGATAAA
83663129 AAAACATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (31 bp):
CCCTTAAAAATTATAAAATTATAAGATAAAT
Found at i:83675150 original size:25 final size:25
Alignment explanation
Indices: 83675121--83675189 Score: 68
Period size: 28 Copynumber: 2.6 Consensus size: 25
83675111 TACAAAGTAT
83675121 ATACATAGTATAATATTAAAAATAC
1 ATACATAGTATAATATTAAAAATAC
* *
83675146 ATACATAATATAGAGTTATTAAAAATAT
1 ATACATAGTATA-A--TATTAAAAATAC
*
83675174 ATATATAAG-ATAATAT
1 ATACAT-AGTATAATAT
83675190 GTAAGAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
25 14 0.39
26 1 0.03
27 1 0.03
28 19 0.53
29 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
ATACATAGTATAATATTAAAAATAC
Found at i:83675226 original size:21 final size:21
Alignment explanation
Indices: 83675202--83675244 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
83675192 AAGAAAAAAA
83675202 AATATAGTATTCGAAATATAT
1 AATATAGTATTCGAAATATAT
83675223 AATATAGTATTCGAAATATAT
1 AATATAGTATTCGAAATATAT
83675244 A
1 A
83675245 CATGATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (21 bp):
AATATAGTATTCGAAATATAT
Found at i:83675795 original size:3 final size:3
Alignment explanation
Indices: 83675787--83675887 Score: 202
Period size: 3 Copynumber: 33.7 Consensus size: 3
83675777 AACAATAGTG
83675787 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83675835 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83675883 ATA AT
1 ATA AT
83675888 CAGTAAATTA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 98 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:83676072 original size:2 final size:2
Alignment explanation
Indices: 83676067--83676096 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
83676057 TATGAAAAAA
83676067 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83676097 ACATTAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:83686172 original size:23 final size:23
Alignment explanation
Indices: 83686122--83686166 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
83686112 CGTGGGTATT
83686122 GGTTTGGACTCATGTTATGCTTA
1 GGTTTGGACTCATGTTATGCTTA
* *
83686145 GGTTTGGGCTTATGTTATGCTT
1 GGTTTGGACTCATGTTATGCTT
83686167 GTGTTTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.29, T:0.47
Consensus pattern (23 bp):
GGTTTGGACTCATGTTATGCTTA
Found at i:83687101 original size:21 final size:21
Alignment explanation
Indices: 83687075--83687114 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
83687065 TGTACTTATT
83687075 CCTGGTAGGGATATCCCTAGC
1 CCTGGTAGGGATATCCCTAGC
*
83687096 CCTGGTTGGGATATCCCTA
1 CCTGGTAGGGATATCCCTA
83687115 TTCAGGGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (21 bp):
CCTGGTAGGGATATCCCTAGC
Found at i:83687957 original size:2 final size:2
Alignment explanation
Indices: 83687950--83687990 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
83687940 TTCTTCACCA
*
83687950 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
83687991 ATAACACCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:83691688 original size:46 final size:47
Alignment explanation
Indices: 83691536--83691799 Score: 238
Period size: 47 Copynumber: 5.7 Consensus size: 47
83691526 AGTGTGAGCT
* *** * *
83691536 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGACTTGA-GATGATAGCC
* * * *
83691582 AGTGTAAGACCATGTCTGGGACATGGCATCAGTA-TTGAGACGAGAGCT
1 AGTGTAAGAACATGTCTGGGACATGGCATC-G-ACTTGAGATGATAGCC
* *
83691630 AGTGTAAG-ACATGTCTGGGACAT-GCATCGACCTCGAGATGATAGTC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGA-CTTGAGATGATAGCC
* *
83691676 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCTATGAGATGATAGTC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGACT-TGAGATGATAGCC
* * *
83691722 AATGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGACTTGAGATGAT-AGCC
* * *
83691769 AGTGTAAGACCTTGTCTAGGACATGGCATCG
1 AGTGTAAGAACATGTCTGGGACATGGCATCG
83691800 GCACTTTACC
Statistics
Matches: 184, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 70 0.38
47 80 0.43
48 28 0.15
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGACTTGAGATGATAGCC
Found at i:83691761 original size:93 final size:95
Alignment explanation
Indices: 83691531--83691801 Score: 290
Period size: 94 Copynumber: 2.9 Consensus size: 95
83691521 ATGTGAGTGT
* * * * *
83691531 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCCAGTGTAAGACCA
1 GAGCTAATGTAAGACATGTCTAGGACATGCATCGACCTCGAGATAT--GAGCCAGTGTAAGACCA
*
83691594 TGTCTGGGACATGGCATCAG-TATTGAGACGA
64 TGTCTGGGACATGGCATCGGCTATTGAGACGA
* * * *
83691625 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAT-AGTCAGTGTAA-AACAT
1 GAGCTAATGTAAGACATGTCTAGGACATGCATCGACCTCGAGAT-ATGAGCCAGTGTAAGACCAT
*
83691688 GTCTGGGACAT-GCATCGGCTA-TGAGATGA
65 GTCTGGGACATGGCATCGGCTATTGAGACGA
* *
83691717 TAG-TCAATGTAAGACCATGTCTAGGACATGGCATCGA-CTTGAGATATGAGCCAGTGTAAGACC
1 GAGCT-AATGTAAGA-CATGTCTAGGACAT-GCATCGACCTCGAGATATGAGCCAGTGTAAGACC
* *
83691780 TTGTCTAGGACATGGCATCGGC
63 ATGTCTGGGACATGGCATCGGC
83691802 ACTTTACCCA
Statistics
Matches: 152, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
91 1 0.01
92 25 0.16
93 47 0.31
94 67 0.44
95 9 0.06
96 1 0.01
97 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGCTAATGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCTATTGAGACGA
Found at i:83691791 original size:140 final size:141
Alignment explanation
Indices: 83691536--83691799 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 141
83691526 AGTGTGAGCT
* * * *
83691536 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTAG
* *
83691601 GACATGGCATCAGTATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCG
66 GACATGGCATCAGTATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGACCTCG
83691665 AGATGATAGTC
131 AGATGATAGTC
* * * *
83691676 AGTGTAAAACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTCAATGTAAGACCATGTCTA
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCA-CATGATGAGAGCCAATGTAAGACCATGTCTA
* *
83691740 GGACATGGCATC-G-ACTTGAGA-TATGAGCCAGTGTAAGACCTTGTCTAGGACATGGCATCG
65 GGACATGGCATCAGTA-TTGAGACGA-GAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCG
83691800 GCACTTTACC
Statistics
Matches: 107, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 2 0.02
139 20 0.19
140 78 0.73
141 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (141 bp):
AGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTAG
GACATGGCATCAGTATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGACCTCG
AGATGATAGTC
Found at i:83695388 original size:47 final size:44
Alignment explanation
Indices: 83695228--83695496 Score: 200
Period size: 47 Copynumber: 5.8 Consensus size: 44
83695218 GGGATATATT
*
83695228 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TAT--GAG
* * * * * *
83695277 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTA-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC-TCTATGAG
* * * * *
83695322 GCCAATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--TCTCTAT-GAG
* * *
83695369 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TATGAG
* * *
83695413 TTTCCGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 --GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-T-ATGAG
*
83695463 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
83695497 GTACAAATCA
Statistics
Matches: 174, Mismatches: 33, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 29 0.17
45 7 0.04
46 22 0.13
47 57 0.33
48 35 0.20
49 17 0.10
50 7 0.04
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTATGAG
Found at i:83695483 original size:94 final size:92
Alignment explanation
Indices: 83695232--83695493 Score: 282
Period size: 94 Copynumber: 2.8 Consensus size: 92
83695222 TATATTGCCG
* * *
83695232 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGAG-GCCGATGCATGTCCCAGAC
83695297 ATGTCTTACACTAGCACAACTCTTAGCCA
64 ATGTCTTACACTAGCACAACTCTTAGCCA
* * * *
83695326 ATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GAGGCCGATGCATGTCCCAGA
** ** *
83695387 CATGTCTTACACTAGC-CCTCGTCTGGTTTCCG
63 CATGTCTTACACTAGCACAAC-TCT--TAGCCA
* * *
83695419 GTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACAT
83695484 GTCTTACACT
66 GTCTTACACT
83695494 GGCGTACAAA
Statistics
Matches: 139, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 2 0.01
91 36 0.26
92 15 0.11
93 21 0.15
94 51 0.37
95 14 0.10
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACAACTCTTAGCCA
Found at i:83701935 original size:47 final size:45
Alignment explanation
Indices: 83701867--83702130 Score: 239
Period size: 47 Copynumber: 5.7 Consensus size: 45
83701857 GTGTGAGCTT
* *
83701867 GTGTAAGACATGTCTGGGACATGTATCGGCTACATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACA-GATGAGAGCCA
** * *
83701913 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACAGATGAGAGCCA
* * *
83701961 GTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGATAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CTAC-AGATGAGAGCCA
* * *
83702007 GTGTAAGACATGT-TGGGACATGCATCGGCTACGAGATAATAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTAC-AGATGAGAGCCA
* * *
83702052 GTGTAAGACCATGTCTGGGATATGGCATTGACTTA-AGAT-ATGAGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACAGATGA-GAGCCA
*
83702099 GTGTAAGACCTTGTCTGGGACATGGCATCGGC
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC
83702131 ACCTTACCCA
Statistics
Matches: 185, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
44 2 0.01
45 36 0.19
46 43 0.23
47 71 0.38
48 29 0.16
49 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACAGATGAGAGCCA
Found at i:83710458 original size:68 final size:68
Alignment explanation
Indices: 83710349--83710484 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
83710339 AACATAAGTT
*
83710349 AGGGATCTTTACGGAACAAGTTAAATGAATAAATCATCCGATTCGAAGCCAGAATAACAAGTACA
1 AGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCGAAGCCAGAATAACAAGTACA
83710414 GTC
66 GTC
83710417 AGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCGAAGCCAGAATAACAAGTACA
1 AGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCGAAGCCAGAATAACAAGTACA
83710482 GTC
66 GTC
83710485 TAGGTGGATT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.21
Consensus pattern (68 bp):
AGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCGAAGCCAGAATAACAAGTACA
GTC
Found at i:83712033 original size:11 final size:11
Alignment explanation
Indices: 83712016--83712064 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
83712006 AGATAAATAT
83712016 TATTTTATTAA
1 TATTTTATTAA
* *
83712027 TACTTTAATAAGA
1 TA-TTTTATTA-A
*
83712040 TATTTTATTAT
1 TATTTTATTAA
83712051 TATTTTATTAA
1 TATTTTATTAA
83712062 TAT
1 TAT
83712065 ATAAAGAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
11 15 0.50
12 12 0.40
13 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:83712061 original size:27 final size:27
Alignment explanation
Indices: 83711984--83712063 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
83711974 GAGATATTTT
* *
83711984 GATATTTTATAATTATTTAATTAGATAA
1 GATATTTTATTATTATTTTATTA-ATAA
**
83712012 -ATATTATT-TTATTAATACT-TTAATAA
1 GATATT-TTATTATT-ATTTTATTAATAA
83712038 GATATTTTATTATTATTTTATTAATA
1 GATATTTTATTATTATTTTATTAATA
83712064 TATAAAGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
26 9 0.22
27 28 0.68
28 4 0.10
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (27 bp):
GATATTTTATTATTATTTTATTAATAA
Found at i:83712066 original size:24 final size:24
Alignment explanation
Indices: 83712011--83712066 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
83712001 TAATTAGATA
83712011 AATATTATTTTATTAATACTTTAAT
1 AATA-TATTTTATTAATACTTTAAT
* * * *
83712036 AAGATATTTTATTATTATTTTATT
1 AATATATTTTATTAATACTTTAAT
83712060 AATATAT
1 AATATAT
83712067 AAAGAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
AATATATTTTATTAATACTTTAAT
Found at i:83714245 original size:38 final size:41
Alignment explanation
Indices: 83714195--83714360 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 41
83714185 CTGATATGAA
83714195 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-T-G
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
83714234 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT-AG
*
83714279 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CAT-AG
* ** *
83714325 AAGAATAAGACCATGGTTGAAAGATATCATGGCAAC
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83714361 ATGACAGAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
38 36 0.33
43 1 0.01
45 1 0.01
46 71 0.65
50 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (41 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
Found at i:83714301 original size:46 final size:46
Alignment explanation
Indices: 83714237--83714409 Score: 213
Period size: 46 Copynumber: 3.8 Consensus size: 46
83714227 CAACCTGTGT
* * * * *
83714237 GTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAGATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* *
83714283 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* *
83714329 ATAAGACCATGGTTGAAAGATATCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGA
* * * *
83714375 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
83714410 TCAAAGATAA
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.01
46 109 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
Found at i:83714710 original size:23 final size:25
Alignment explanation
Indices: 83714665--83714711 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
83714655 AATAAATATA
*
83714665 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
83714690 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
83714712 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:83733442 original size:19 final size:19
Alignment explanation
Indices: 83733408--83733446 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
83733398 GATTTCGTAC
*
83733408 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAGTTTCT-CGTT
83733428 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
83733446 T
1 T
83733447 CTTTCACTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Done.