Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 28 of 378
Found at i:6857811 original size:127 final size:127
Alignment explanation
Indices: 6857578--6857811 Score: 398
Period size: 127 Copynumber: 1.8 Consensus size: 127
6857568 TGACGTTTGG
* *
6857578 AAATTCGGGAAATCCTGCCCTAACGTGCTGGGTTTCGATTTTCTGTTTGTCCAAATGATCAAATA
1 AAATTCGGGAAATCATGCCCTAACGTGCTAGGTTTCGATTTTCTGTTTGTCCAAATGATCAAATA
* *
6857643 TCCCTTTAAAATTTCGTCCACGTTTTCTAAACTTTAAAACAAAGGTGATGTTTGATACTTAA
66 TCCCTTCAAAATTTCGTCCACGTTTTCTAAACTTCAAAACAAAGGTGATGTTTGATACTTAA
6857705 AAATTCGGGAAATCATGCCCTAACGTGCTAGGTTTCGATTTTCTGTTTGTCCAAATGATCAAATA
1 AAATTCGGGAAATCATGCCCTAACGTGCTAGGTTTCGATTTTCTGTTTGTCCAAATGATCAAATA
* *
6857770 TCCCTTCAAAATTTCGTCCGCGTTCTT-TAAACTTCACAACAA
66 TCCCTTCAAAATTTCGTCCACGTT-TTCTAAACTTCAAAACAA
6857812 GGCAATATTC
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
127 98 0.98
128 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (127 bp):
AAATTCGGGAAATCATGCCCTAACGTGCTAGGTTTCGATTTTCTGTTTGTCCAAATGATCAAATA
TCCCTTCAAAATTTCGTCCACGTTTTCTAAACTTCAAAACAAAGGTGATGTTTGATACTTAA
Found at i:6858030 original size:22 final size:23
Alignment explanation
Indices: 6858005--6858050 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
6857995 CAACCAAACC
6858005 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
6858027 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
6858050 A
1 A
6858051 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:6858056 original size:23 final size:23
Alignment explanation
Indices: 6858012--6858056 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6858002 ACCAATTCAA
*
6858012 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
6858035 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
6858057 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:6862905 original size:16 final size:16
Alignment explanation
Indices: 6862881--6862911 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6862871 TTAAGCTTTA
6862881 TTTTATTTCAATTAAG
1 TTTTATTTCAATTAAG
*
6862897 TTTTTTTTCAATTAA
1 TTTTATTTCAATTAA
6862912 TATGATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTTATTTCAATTAAG
Found at i:6863120 original size:2 final size:2
Alignment explanation
Indices: 6863113--6863139 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6863103 ATATTAATAC
6863113 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6863140 AAAGTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6863211 original size:24 final size:24
Alignment explanation
Indices: 6863183--6863228 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
6863173 ATATTATTAA
6863183 TCCCATGTTAACATATTTATAAAT
1 TCCCATGTTAACATATTTATAAAT
*
6863207 TCCCATGTTAACTTATTTATAA
1 TCCCATGTTAACATATTTATAA
6863229 CTTCTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (24 bp):
TCCCATGTTAACATATTTATAAAT
Found at i:6864220 original size:127 final size:124
Alignment explanation
Indices: 6863994--6864309 Score: 418
Period size: 127 Copynumber: 2.5 Consensus size: 124
6863984 CGACTTTTTA
* * * * *
6863994 AAAACAAAGGCGATATTTGACGTTCGAAAATTCGGGAAATCCTGTCCTAACGTGCTGAGTTTCGA
1 AAAAC-AAGGCGATATTTGATGTTTGGAAATTC-GGAAATCATG-CCTAACGTGCTGGGTTTCGA
* *
6864059 TTTTCTGTTTGTCCAAATGATCAAATATCCCTTTAAAATTTCGTCCGCGTTTTCTAAACTTT
63 TTTTCTGTTTGTCCAAATGATCAAATATCCCTTTAAAATTTCGTCCGCGTTCTCTAAACTTC
* *
6864121 AAAACAACGGCGATGTTTGATGTTTGGAAATTCTGGAAATCATGCACTAACATGCTGGGTTTCGA
1 AAAACAA-GGCGATATTTGATGTTTGGAAATTC-GGAAATCATGC-CTAACGTGCTGGGTTTCGA
6864186 TTTTCTGTTTGTCCAAATGATCAAATATCCCTTTAAAATTTCGTCCGCGTTCTCTAAACTTC
63 TTTTCTGTTTGTCCAAATGATCAAATATCCCTTTAAAATTTCGTCCGCGTTCTCTAAACTTC
* * * * *
6864248 ACAACAAGGCAATATTCT-ATGTTTGGAAACTCGAGAAATCGTGCCCTAACGTGTTGGGTTTC
1 AAAACAAGGCGATATT-TGATGTTTGGAAATTCG-GAAATCATG-CCTAACGTGCTGGGTTTC
6864310 AGTTTTTCGT
Statistics
Matches: 167, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
125 1 0.01
126 46 0.28
127 120 0.72
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (124 bp):
AAAACAAGGCGATATTTGATGTTTGGAAATTCGGAAATCATGCCTAACGTGCTGGGTTTCGATTT
TCTGTTTGTCCAAATGATCAAATATCCCTTTAAAATTTCGTCCGCGTTCTCTAAACTTC
Found at i:6866102 original size:5 final size:5
Alignment explanation
Indices: 6866092--6866121 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
6866082 CATTTTAAGT
6866092 TTTTA TTTTA TTTTA TTTTA TTTTCA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTT
6866122 TTATTTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:6872094 original size:64 final size:64
Alignment explanation
Indices: 6872021--6872148 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
6872011 TCATTCATAA
* *
6872021 CACATCTAGTTAGGAGTATTT-ATTTCATTTCGATCATAGCATCTTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGA-TTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* *
6872085 CACATCTAGTTAGGAGCATTTGATTCCTTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
6872149 AGATACATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 58 0.98
65 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:6872344 original size:45 final size:45
Alignment explanation
Indices: 6872295--6872820 Score: 244
Period size: 45 Copynumber: 12.0 Consensus size: 45
6872285 AAGCAGACTA
* *
6872295 AAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTAGAGCAGATCG
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * * **
6872340 AAGATAGC-GAATCTTGTCTTCCTGAAGTTACAGTGAAGCAGATTT
1 AAGATTGCAG-ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * * * * * * *
6872385 AAG---CCACCATCCTATCT-CCTTAAGTTGTAGTGGAGTAG-GCT
1 AAGATTGCA-GATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * *
6872426 AGAGATTGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCG
1 A-AGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * **
6872472 AAGATGGC-GAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTT
1 AAGATTGCAG-ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * * * ** * * *
6872517 AAG-CTAC-CATCCTATCTCCCT-AAGCAGTAGTGGAGTAG-GCTG
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATC-G
* *
6872559 AAGATTGTAGATCTTGTCTCCCTGAAGTTGCAATGGAGCAGATCG
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
*** * **** **
6872604 AAGACAACAAATCTTGTCTCCCT-AAGCAATAGTGGAGCAGATTT
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * * ** * * *
6872648 AAG---CCACCATCCTATCTCCCT-AAGCAGTAGTGGAGTAG-GCTG
1 AAGATTGCA-GATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATC-G
* * * *
6872690 AAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAAATCA
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
** * * * *
6872735 AAG-CCGCAAATCTTGTCTCTCTGAAGTTACAGTGGAGCAGATTG
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* *
6872779 AAG-TTGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGAT
6872821 TAAAGCCACA
Statistics
Matches: 349, Mismatches: 110, Indels: 45
0.69 0.22 0.09
Matches are distributed among these distances:
41 4 0.01
42 63 0.18
43 18 0.05
44 117 0.34
45 143 0.41
46 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (45 bp):
AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
Found at i:6872533 original size:132 final size:132
Alignment explanation
Indices: 6872295--6872777 Score: 659
Period size: 132 Copynumber: 3.7 Consensus size: 132
6872285 AAGCAGACTA
* * *
6872295 AAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTAGAGCAGATCGAAGATAGCGAATCTTGTCTT
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACAGCAAATCTTGTCTT
* **
6872360 CCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTATCTCCTTAAGTTGTAGTGGAGTAGGC
66 CCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGC
6872425 T-
131 TG
* * * * ** *
6872426 AGAGATTGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGATGGCGAATCTTGTCT
1 A-AGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACAGCAAATCTTGTCT
* *
6872491 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCTACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGG
65 TCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGG
6872556 CTG
130 CTG
* * * * *
6872559 AAGATTGTAGATCTTGTCTCCCTGAAGTTGCAATGGAGCAGATCGAAGACAACAAATCTTGTCTC
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACAGCAAATCTTGTCTT
** * *
6872624 CCT-AAGCAATAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGC
66 CCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGC
6872688 TG
131 TG
* * * *
6872690 AAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAAATCAAAG-CCGCAAATCTTGTC-T
1 AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACAGCAAATCTTGTCTT
*
6872753 CTCTGAAGTTACAGTGGAGCAGATT
66 C-CTGAAGTTACAGTGAAGCAGATT
6872778 GAAGTTGCAA
Statistics
Matches: 311, Mismatches: 37, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
129 1 0.00
130 14 0.05
131 119 0.38
132 176 0.57
133 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (132 bp):
AAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACAGCAAATCTTGTCTT
CCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGC
TG
Found at i:6872748 original size:44 final size:44
Alignment explanation
Indices: 6872700--6872834 Score: 180
Period size: 44 Copynumber: 3.1 Consensus size: 44
6872690 AAGATTGTAG
* * *
6872700 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAAATCAAAGCCGCAA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* * * **
6872744 ATCTTGTCTCTCTGAAGTTACAGTGGAGCAGATTGAAGTTGCAA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* *
6872788 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
6872832 ATC
1 ATC
6872835 CTATACCTCT
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 76 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
Found at i:6872847 original size:44 final size:44
Alignment explanation
Indices: 6872700--6872851 Score: 171
Period size: 44 Copynumber: 3.5 Consensus size: 44
6872690 AAGATTGTAG
* * * * *
6872700 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAAATCAAAGCCGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* * * **
6872744 ATCTTGTCTCTCTGAAGTTACAGTGGAGCAGATTGAAGTTGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* *
6872788 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
*
6872832 ATCCTATAC-CTCTGAAGTTG
1 ATCTTAT-CTCTCTGAAGTTG
6872852 TAGTAGGTTG
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
44 89 0.99
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
Found at i:6873007 original size:44 final size:46
Alignment explanation
Indices: 6872935--6873046 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 46
6872925 AACCTTACCC
* *
6872935 CCCTAAAGTTGCAGTGGGGCA-AGTTGAAGTTA-CA-AGTCTTATCT
1 CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATAGCAGA-TCTTATCT
6872979 CCCTAAAGTTGCAGTGGGGCAGA-CTGAAGATAGCAGATCTTATCT
1 CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATAGCAGATCTTATCT
* * * *
6873024 CCTTGAAGTTGCAATGGAGCAGA
1 CCCTAAAGTTGCAGTGGGGCAGA
6873047 TCAAGCTACA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 28 0.47
45 30 0.51
46 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (46 bp):
CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATAGCAGATCTTATCT
Found at i:6873035 original size:45 final size:45
Alignment explanation
Indices: 6872935--6873046 Score: 131
Period size: 44 Copynumber: 2.5 Consensus size: 45
6872925 AACCTTACCC
* *
6872935 CCCTAAAGTTGCAGTGGGGCA-AGTTGAAGTTACAAGTCTTATCT
1 CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATACAAGTCTTATCT
6872979 CCCTAAAGTTGCAGTGGGGCAGA-CTGAAGATAGC-AGATCTTATCT
1 CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATA-CAAG-TCTTATCT
* * * *
6873024 CCTTGAAGTTGCAATGGAGCAGA
1 CCCTAAAGTTGCAGTGGGGCAGA
6873047 TCAAGCTACA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 30 0.51
45 29 0.49
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (45 bp):
CCCTAAAGTTGCAGTGGGGCAGAGCTGAAGATACAAGTCTTATCT
Found at i:6875772 original size:75 final size:74
Alignment explanation
Indices: 6875612--6875775 Score: 175
Period size: 75 Copynumber: 2.2 Consensus size: 74
6875602 AATCTTACTG
* * * * *
6875612 AACTTGATCTTTCATCAAATAATTTTAATGGTGTAATCAACTCAGTTATGTTTTCAAAGTTAGAG
1 AACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAAG
* *
6875677 AATCTTTTA
66 AAGCTTTGA
* * * * * *
6875686 ACACTTGATCTTTCATCAAATAGTTTTAGCGGTGTCATCAAGTTAGATGTGCTTTCAAAGCTAAA
1 A-ACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAA
*
6875751 GAGGCTTATGA
65 GAAGCTT-TGA
*
6875762 AACTTAATCTTTCA
1 AACTTGATCTTTCA
6875776 AACAACACAT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
74 1 0.01
75 69 0.95
76 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (74 bp):
AACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAAG
AAGCTTTGA
Found at i:6878856 original size:2 final size:2
Alignment explanation
Indices: 6878849--6878893 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
6878839 CTATACATAC
6878849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6878891 AT A
1 AT A
6878894 GTCATAGTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6879118 original size:34 final size:34
Alignment explanation
Indices: 6879070--6879138 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
6879060 TTAGTTGCAA
*
6879070 ATTTTGACCTTGAAAAGTTGGTTTGATTTCTAAC
1 ATTTTGACCATGAAAAGTTGGTTTGATTTCTAAC
*
6879104 ATTTTGGCCATGAAAAGTTGGTTTGATTTCTAAC
1 ATTTTGACCATGAAAAGTTGGTTTGATTTCTAAC
6879138 A
1 A
6879139 CCTCTGACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.42
Consensus pattern (34 bp):
ATTTTGACCATGAAAAGTTGGTTTGATTTCTAAC
Found at i:6880597 original size:11 final size:11
Alignment explanation
Indices: 6880556--6880598 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
6880546 TTGACCTTTC
6880556 CAAGGTATGGG
1 CAAGGTATGGG
* *
6880567 -TAGGTATGAG
1 CAAGGTATGGG
*
6880577 AAAGGTATGGG
1 CAAGGTATGGG
6880588 CAAGGTATGGG
1 CAAGGTATGGG
6880599 GTATATTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.30, C:0.05, G:0.44, T:0.21
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:6881697 original size:21 final size:19
Alignment explanation
Indices: 6881667--6881710 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
6881657 CTTTAATTCA
**
6881667 TTTTTTTCTTTATTTTTATT
1 TTTTTTTC-TTAAATTTATT
6881687 TTTTCTTTCTTAAATTTATT
1 TTTT-TTTCTTAAATTTATT
6881707 TTTT
1 TTTT
6881711 GTCTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTCTTAAATTTATT
Found at i:6881900 original size:11 final size:11
Alignment explanation
Indices: 6881881--6881919 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6881871 TAACCCAACT
6881881 ACCCAATTAAA
1 ACCCAATTAAA
*
6881892 ACTCAATTAAA
1 ACCCAATTAAA
6881903 ACCCAA-TACAA
1 ACCCAATTA-AA
6881914 ACCCAA
1 ACCCAA
6881920 AAACCCTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 2 0.08
11 23 0.92
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (11 bp):
ACCCAATTAAA
Found at i:6883139 original size:2 final size:2
Alignment explanation
Indices: 6883132--6883160 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6883122 ACTTAATACT
6883132 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6883161 GTTACATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6883298 original size:20 final size:18
Alignment explanation
Indices: 6883269--6883308 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
6883259 TATTAGTTCC
6883269 TTTTAAGTATTATATATATA
1 TTTTAAGTA-TAT-TATATA
*
6883289 TTTTACGTATATTATATA
1 TTTTAAGTATATTATATA
6883307 TT
1 TT
6883309 ATATGTATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAAGTATATTATATA
Found at i:6883316 original size:18 final size:18
Alignment explanation
Indices: 6883279--6883330 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
6883269 TTTTAAGTAT
* *
6883279 TATA-TATATATTTTACG
1 TATATTATATATTATATG
6883296 TATATTATATATTATATG
1 TATATTATATATTATATG
*
6883314 TATACTT-TATTTTATAT
1 TATA-TTATATATTATAT
6883331 ATTACGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 4 0.13
18 24 0.80
19 2 0.07
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (18 bp):
TATATTATATATTATATG
Found at i:6887423 original size:18 final size:18
Alignment explanation
Indices: 6887400--6887442 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
6887390 AACGTTTTTT
6887400 TTGCATTCATCGCATT-CA
1 TTGCATTCAT-GCATTACA
6887418 TTGCATTCATGCATTAGCA
1 TTGCATTCATGCATTA-CA
6887437 TTGCAT
1 TTGCAT
6887443 CATACGTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (18 bp):
TTGCATTCATGCATTACA
Found at i:6897622 original size:22 final size:22
Alignment explanation
Indices: 6897597--6897642 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
6897587 TTCGCCTTGA
*
6897597 AACATAACAAATAAAATTCTTC
1 AACATAACAAATAAAATTCCTC
6897619 AACATAACAAATAAAATTCCTC
1 AACATAACAAATAAAATTCCTC
6897641 AA
1 AA
6897643 AGTTGCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
AACATAACAAATAAAATTCCTC
Found at i:6903566 original size:32 final size:30
Alignment explanation
Indices: 6903529--6903588 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 30
6903519 CTTGCAGAGA
*
6903529 AAAAAAAGGGAGAGAAAGCTGAGTTTTTTTTTT
1 AAAAAAA-GAAGAGAAAG-TGA-TTTTTTTTTT
6903562 AAAAAAAGAAGAGAAAGTGATTTTTTT
1 AAAAAAAGAAGAGAAAGTGATTTTTTT
6903589 AAAAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 7 0.27
31 3 0.12
32 9 0.35
33 7 0.27
ACGTcount: A:0.45, C:0.02, G:0.22, T:0.32
Consensus pattern (30 bp):
AAAAAAAGAAGAGAAAGTGATTTTTTTTTT
Found at i:6904339 original size:3 final size:3
Alignment explanation
Indices: 6904319--6904369 Score: 61
Period size: 3 Copynumber: 17.7 Consensus size: 3
6904309 TATTTGACAC
* * *
6904319 ATT ATT GTT ATC ATT ATT ATT TTT A-T ATT ATT ATT ATT ATT ATT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6904365 ATT AT
1 ATT AT
6904370 ATTTAGTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:6904382 original size:20 final size:20
Alignment explanation
Indices: 6904326--6904369 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
6904316 CACATTATTG
* *
6904326 TTATCATTATTATTTTTATA
1 TTATTATTATTATTATTATA
6904346 TTATTATTATTATTATTATA
1 TTATTATTATTATTATTATA
6904366 TTAT
1 TTAT
6904370 ATTTAGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTATTATTATTATTATA
Found at i:6904429 original size:3 final size:3
Alignment explanation
Indices: 6904421--6904491 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
6904411 TATGCACATA
6904421 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6904469 TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
6904492 GTACTAGTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:6904622 original size:23 final size:22
Alignment explanation
Indices: 6904567--6904705 Score: 94
Period size: 23 Copynumber: 6.2 Consensus size: 22
6904557 TAATAGTTTT
*
6904567 TTTTTATATATTATTGT-CAT-
1 TTTTTATATATTATTGTATATA
* * *
6904587 TTCTAATATATATATTGTATATG
1 TTTTTATATAT-TATTGTATATA
6904610 TTTTTATATA-TATTATGTATATA
1 TTTTTATATATTA-T-TGTATATA
6904633 TTTTTA-ATATTATTAGTTATATA
1 TTTTTATATATTATT-G-TATATA
*
6904656 TTTTT-TATACTATT-TCATGAATA
1 TTTTTATATATTATTGT-AT--ATA
6904679 TATTTTATTATATTA-TGTATATA
1 T-TTTTA-TATATTATTGTATATA
6904702 TTTT
1 TTTT
6904706 AATAACTATA
Statistics
Matches: 95, Mismatches: 8, Indels: 30
0.71 0.06 0.23
Matches are distributed among these distances:
20 10 0.11
21 11 0.12
22 11 0.12
23 49 0.52
24 4 0.04
25 3 0.03
26 7 0.07
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTTTATATATTATTGTATATA
Found at i:6904702 original size:21 final size:22
Alignment explanation
Indices: 6904592--6904723 Score: 110
Period size: 23 Copynumber: 5.7 Consensus size: 22
6904582 GTCATTTCTA
*
6904592 ATATATA-TATTGTATATGTTTTT
1 ATATATATTA-TGTATAT-ATTTT
6904615 ATATATATTATGTATATATTTT
1 ATATATATTATGTATATATTTT
6904637 -TA-ATATTATTAGTTATATATTTT
1 ATATATATTA-T-G-TATATATTTT
* *
6904660 TTATACTATTTCATGAATATATTTT
1 ATATA-TA-TT-ATGTATATATTTT
6904685 AT-TATATTATGTATATATTTT
1 ATATATATTATGTATATATTTT
6904706 AATAACTATATTATGTAT
1 -AT-A-TATATTATGTAT
6904724 GTGTCGTAAC
Statistics
Matches: 92, Mismatches: 4, Indels: 24
0.77 0.03 0.20
Matches are distributed among these distances:
20 6 0.07
21 15 0.16
22 9 0.10
23 26 0.28
24 6 0.07
25 23 0.25
26 3 0.03
27 3 0.03
28 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (22 bp):
ATATATATTATGTATATATTTT
Found at i:6906501 original size:21 final size:22
Alignment explanation
Indices: 6906477--6906529 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
6906467 TATACAAAAC
*
6906477 AAAATATACGCATAATATA-TT
1 AAAATATACGCATAATATACAT
** *
6906498 AAAATATATACATAATGTACAT
1 AAAATATACGCATAATATACAT
6906520 AAAATATACG
1 AAAATATACG
6906530 TATATACATC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (22 bp):
AAAATATACGCATAATATACAT
Found at i:6908035 original size:22 final size:24
Alignment explanation
Indices: 6908010--6908056 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
6908000 ATGTATATAC
*
6908010 TTTTAATAT-TAT-TACGTATTTA
1 TTTTAATATATATATACATATTTA
6908032 TTTTAATATATATATACATATTTA
1 TTTTAATATATATATACATATTTA
6908056 T
1 T
6908057 GTAGTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.41
23 3 0.14
24 10 0.45
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTAATATATATATACATATTTA
Found at i:6908053 original size:24 final size:22
Alignment explanation
Indices: 6908010--6908079 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
6908000 ATGTATATAC
*
6908010 TTTTAATATTATTACGTATTTA
1 TTTTAATATTATTACATATTTA
6908032 TTTTAATATATATATACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* * *
6908056 -TGTAGTATTATTA-ATATATA
1 TTTTAATATTATTACATATTTA
6908076 TTTT
1 TTTT
6908080 TTATGTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 6 0.15
21 4 0.10
22 12 0.30
23 9 0.22
24 9 0.22
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:6908102 original size:31 final size:32
Alignment explanation
Indices: 6908030--6908117 Score: 94
Period size: 31 Copynumber: 2.8 Consensus size: 32
6908020 ATTACGTATT
**
6908030 TATT-TTAATATATATATACATAT-TTATGTAG
1 TATTATTAATATATAT-TGTATATGTTATGTAG
* *
6908061 TATTATTAATATATATTTTTTATGTTAT-TAG
1 TATTATTAATATATATTGTATATGTTATGTAG
6908092 TATT-TCTAATATATATTGTATATGTT
1 TATTAT-TAATATATATTGTATATGTT
6908118 CATTTTATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 33 0.67
32 15 0.31
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (32 bp):
TATTATTAATATATATTGTATATGTTATGTAG
Found at i:6908204 original size:2 final size:2
Alignment explanation
Indices: 6908197--6908225 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6908187 ACATACTGTA
6908197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6908226 GCACTATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6911336 original size:206 final size:206
Alignment explanation
Indices: 6910972--6911563 Score: 951
Period size: 206 Copynumber: 2.9 Consensus size: 206
6910962 TCAGTATCTG
6910972 TCATCTTGGATC-TGCTTCAGTATAAACATCCGAAGGCGAGATCTGC--TGTGTCTGCTCTCCAT
1 TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
* ** * *
6911034 CAAAGTGAAGATGCCAAACTTCGATTCACTCTCTGACAATACATAGACGAGAAATCATCTTAGAT
66 CAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
*
6911099 TTGCTTCATCGTAATCAAGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
131 TTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
**
6911164 AGGATTTAAAA
196 AGGATGCAAAA
6911175 TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
1 TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
6911240 CAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
66 CAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
6911305 TTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
131 TTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
*
6911370 AGGATGCCAAA
196 AGGATGCAAAA
* * *
6911381 TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGGTC-AAATCTGCTATGTATCAGCTCTCCA
1 TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGG-CGAGATCTGCTATGTGTCTGCTCTCCA
** * *
6911445 TTGAAGTGAAGATGCCAAACTTTGATTTGTTCTCTGACAATATAGAGACGACAAATCATCTTAGA
65 TCAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGA
* * * *
6911510 TTTGCTTCATCGTAAAT-ACGTGAAAGCCAAAGCAGCCATGTTTTCGATCTGTTC
130 TTTGCTTCATCGT-AATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTC
6911564 TTCACCGAAT
Statistics
Matches: 364, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
203 12 0.03
204 34 0.09
206 314 0.86
207 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
TCATCTTGGATCTTGCTTCAGTATAAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
CAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
TTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
AGGATGCAAAA
Found at i:6912585 original size:53 final size:54
Alignment explanation
Indices: 6912459--6912593 Score: 236
Period size: 54 Copynumber: 2.5 Consensus size: 54
6912449 CTTTTGGTCA
6912459 CAAGGTGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCGTTTTTGATTTTTTTTT
1 CAAGGTGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCGTTTTTGATTTTTTTTT
*
6912513 CAAGGTGCCCTTTGTGGGTTTTCACCTTGGCCTCTCCGTTTTTGA-TTTTTTTT
1 CAAGGTGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCGTTTTTGATTTTTTTTT
* *
6912566 CAAGGCGCCTTTTGCGGGTTTTCACCTT
1 CAAGGTGCCCTTTGCGGGTTTTCACCTT
6912594 AGATTCTCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 33 0.43
54 44 0.57
ACGTcount: A:0.08, C:0.24, G:0.21, T:0.46
Consensus pattern (54 bp):
CAAGGTGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCGTTTTTGATTTTTTTTT
Found at i:6913939 original size:15 final size:15
Alignment explanation
Indices: 6913917--6913952 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
6913907 TCGTAAACAC
6913917 TCATTTGAATTGGCT
1 TCATTTGAATTGGCT
*
6913932 TTATTTGAATTGGCT
1 TCATTTGAATTGGCT
6913947 TCATTT
1 TCATTT
6913953 CTTCTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.11, G:0.17, T:0.53
Consensus pattern (15 bp):
TCATTTGAATTGGCT
Found at i:6919673 original size:15 final size:15
Alignment explanation
Indices: 6919653--6919683 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6919643 TTCCAGATTT
6919653 TCTTTTCTACATCTC
1 TCTTTTCTACATCTC
*
6919668 TCTTTTCTACCTCTC
1 TCTTTTCTACATCTC
6919683 T
1 T
6919684 GGAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.35, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACATCTC
Found at i:6925008 original size:8 final size:7
Alignment explanation
Indices: 6924984--6925028 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
6924974 CACCGCAACG
6924984 AAAGAAA
1 AAAGAAA
*
6924991 GAAGAAA
1 AAAGAAA
*
6924998 AAGGAAA
1 AAAGAAA
6925005 AAAGAAAA
1 AAAG-AAA
6925013 AAAGAAA
1 AAAGAAA
6925020 AAAGAAA
1 AAAGAAA
6925027 AA
1 AA
6925029 GGAAGGCTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAGAAA
Found at i:6930841 original size:26 final size:26
Alignment explanation
Indices: 6930796--6930905 Score: 161
Period size: 26 Copynumber: 4.2 Consensus size: 26
6930786 TGATACAAAT
*
6930796 TGATAAT-AGGTTAGGTAAATGTTCCA
1 TGATAATGA-GTTAGGTAAATGTTTCA
*
6930822 TGACAATGAGTTAGGTAAATGTTTCA
1 TGATAATGAGTTAGGTAAATGTTTCA
6930848 TGATAAT-AGGTTAGGTAAATGTTTCA
1 TGATAATGA-GTTAGGTAAATGTTTCA
*
6930874 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGAGTTAGGTAAATGTTTCA
6930900 TGATAA
1 TGATAA
6930906 GAATATCATG
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
25 1 0.01
26 75 0.97
27 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTTCA
Found at i:6930858 original size:52 final size:52
Alignment explanation
Indices: 6930796--6930905 Score: 193
Period size: 52 Copynumber: 2.1 Consensus size: 52
6930786 TGATACAAAT
6930796 TGATAATAGGTTAGGTAAATGTTCCATGACAATGAGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGACAATGAGTTAGGTAAATGTTTCA
* * *
6930848 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGACAATGAGTTAGGTAAATGTTTCA
6930900 TGATAA
1 TGATAA
6930906 GAATATCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGACAATGAGTTAGGTAAATGTTTCA
Found at i:6932420 original size:26 final size:26
Alignment explanation
Indices: 6932391--6932443 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6932381 TTTACAGTTT
6932391 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
6932417 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
6932443 T
1 T
6932444 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:6932937 original size:137 final size:137
Alignment explanation
Indices: 6932691--6932977 Score: 511
Period size: 137 Copynumber: 2.1 Consensus size: 137
6932681 GAGTAGTCTC
* *
6932691 CCCAAATGGGATTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
6932756 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCTAGTACC
66 TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
6932821 ACTGTTA
131 ACTGTTA
6932828 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
6932893 TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
6932958 ACTGTTA
131 ACTGTTA
**
6932965 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6932978 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 143 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:6933962 original size:35 final size:35
Alignment explanation
Indices: 6933912--6933981 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
6933902 TTTTTTCTTT
6933912 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
* *
6933947 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
6933982 GGATCTGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.13, C:0.27, G:0.34, T:0.26
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
Found at i:6941379 original size:35 final size:35
Alignment explanation
Indices: 6941329--6941398 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
6941319 TTTTTTCTTT
6941329 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
*
6941364 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
6941399 GGATCTGACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.13, C:0.26, G:0.36, T:0.26
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:6943962 original size:29 final size:30
Alignment explanation
Indices: 6943924--6943993 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
6943914 GATGTATCAC
*
6943924 TTTATGTATTAGTATAA-ATATTTT-AATTA
1 TTTATTTATTAGTATAATAT-TTTTAAATTA
*
6943953 TTTATTTATT-TTATAATATTTTTAAATTA
1 TTTATTTATTAGTATAATATTTTTAAATTA
6943982 TTTATTGTATTA
1 TTTATT-TATTA
6943994 AATTTAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 9 0.26
29 22 0.63
30 4 0.11
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (30 bp):
TTTATTTATTAGTATAATATTTTTAAATTA
Found at i:6947239 original size:75 final size:74
Alignment explanation
Indices: 6947079--6947242 Score: 175
Period size: 75 Copynumber: 2.2 Consensus size: 74
6947069 AATCTTACTG
* * * * *
6947079 AACTTGATCTTTCATCAAATAATTTTAATGGTGTAATCAACTCAGTTATGTTTTCAAAGTTAGAG
1 AACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAAG
* *
6947144 AATCTTTTA
66 AAGCTTTGA
* * * * * *
6947153 ACACTTGATCTTTCATCAAATAGTTTTAGCGGTGTCATCAAGTTAGATGTGCTTTCAAAGCTAAA
1 A-ACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAA
*
6947218 GAGGCTTATGA
65 GAAGCTT-TGA
*
6947229 AACTTAATCTTTCA
1 AACTTGATCTTTCA
6947243 AACAACACAT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
74 1 0.01
75 69 0.95
76 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (74 bp):
AACTTGATCTTTCATCAAATAATTTTAACGGTGTAATCAACTCAGATATGCTTTCAAAGCTAAAG
AAGCTTTGA
Found at i:6952439 original size:51 final size:51
Alignment explanation
Indices: 6952367--6952690 Score: 224
Period size: 45 Copynumber: 6.7 Consensus size: 51
6952357 GATTTCAACT
* * * *
6952367 TGTTCCACTGCATCTTTAGGGAGATGAGGTTTGTAATTTGTAGCTTCAATC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTCAATC
* * *
6952418 TGTTCCACTACAACTTCAGGGAAATAAGATTTGCT-ATCTT-CAG-TT---TC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTG-TAAT-TTGTAGCTTCAATC
* * *
6952465 --CTCCACTACAACTTTAGGGAGATAAGGTTTTTAATTTGTAGCTTCAATC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTCAATC
* * * * * *
6952514 TATTCCACTGCATCTTTAGGGAAAT-A-A-----AATTTGCTATCTTCAGTC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTG-TAGCTTCAATC
* * *
6952559 TGCTCCACTACAACTTTAGGGAGATAAGACTTGTAATTAGTAGCTTCAATC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTCAATC
** * *
6952610 TGTTCCACTACAACTTCCGGGAAATAAGATTTGCT-A----T--CTTCAGTC
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTG-TAATTTGTAGCTTCAATC
* * *
6952655 TGCTCCACTACAACTTCAGGGAGATAAGACTTGTAA
1 TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAA
6952691 CTTCAACTTG
Statistics
Matches: 215, Mismatches: 38, Indels: 46
0.72 0.13 0.15
Matches are distributed among these distances:
44 10 0.05
45 96 0.45
46 3 0.01
47 4 0.02
49 2 0.01
50 3 0.01
51 88 0.41
52 9 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (51 bp):
TGTTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTCAATC
Found at i:6952470 original size:45 final size:45
Alignment explanation
Indices: 6952402--6952774 Score: 229
Period size: 45 Copynumber: 8.1 Consensus size: 45
6952392 GAGGTTTGTA
* * *
6952402 ATTTG-TAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAG
1 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
* * * *
6952446 ATTTGCTATCTTCAGTTTCCTCCACTACAACTTTAGGGAGATAAGG
1 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAA-G
* * ** * * * *
6952492 TTTTTAATTTG-TAGCTTCAATCTATTCCACTGCATCTTTAGGGAAATAAA
1 ------ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
* *
6952542 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAG
1 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
** * * *
6952587 ACTTGTAATTAGTAGCTTCAATCTGTTCCACTACAACTTCCGGGAAATAAG
1 A-TT-T-GCTA-T--CTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
*
6952638 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAG
1 ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
* * * * * * *
6952683 ACTTG-TAACTTCA-ACTTGCTCCAC-GCAGCTTTAGGGAGATAAG
1 ATTTGCTATCTTCAGTC-TGCTCCACTACAACTTCAGGGAAATAAG
* ** ** *
6952726 GTTTG-TGAT-TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAG
1 ATTTGCT-ATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
*
6952770 GTTTG
1 ATTTG
6952775 TGCCTTTAAT
Statistics
Matches: 260, Mismatches: 50, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
43 33 0.13
44 48 0.18
45 99 0.38
46 3 0.01
47 2 0.01
48 4 0.02
49 2 0.01
50 2 0.01
51 62 0.24
52 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (45 bp):
ATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAG
Found at i:6952484 original size:96 final size:96
Alignment explanation
Indices: 6952370--6952682 Score: 482
Period size: 96 Copynumber: 3.3 Consensus size: 96
6952360 TTCAACTTGT
* * *
6952370 TCCACTGCATCTTTAGGGAGATGAGGTTTGTAATTTGTAGCTTCAATCTGTTCCACTACAACTTC
1 TCCACTACAACTTTAGGGAGATAAGGTTTGTAATTTGTAGCTTCAATCTGTTCCACTACAACTTC
* *
6952435 AGGGAAATAAGATTTGCTATCTTCAGTTTCC
66 AGGGAAATAAGATTTGCTATCTTCAGTCTGC
* * * * *
6952466 TCCACTACAACTTTAGGGAGATAAGGTTTTTAATTTGTAGCTTCAATCTATTCCACTGCATCTTT
1 TCCACTACAACTTTAGGGAGATAAGGTTTGTAATTTGTAGCTTCAATCTGTTCCACTACAACTTC
*
6952531 AGGGAAATAAAATTTGCTATCTTCAGTCTGC
66 AGGGAAATAAGATTTGCTATCTTCAGTCTGC
** *
6952562 TCCACTACAACTTTAGGGAGATAAGACTTGTAATTAGTAGCTTCAATCTGTTCCACTACAACTTC
1 TCCACTACAACTTTAGGGAGATAAGGTTTGTAATTTGTAGCTTCAATCTGTTCCACTACAACTTC
*
6952627 CGGGAAATAAGATTTGCTATCTTCAGTCTGC
66 AGGGAAATAAGATTTGCTATCTTCAGTCTGC
*
6952658 TCCACTACAACTTCAGGGAGATAAG
1 TCCACTACAACTTTAGGGAGATAAG
6952683 ACTTGTAACT
Statistics
Matches: 195, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 195 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (96 bp):
TCCACTACAACTTTAGGGAGATAAGGTTTGTAATTTGTAGCTTCAATCTGTTCCACTACAACTTC
AGGGAAATAAGATTTGCTATCTTCAGTCTGC
Found at i:6952739 original size:43 final size:44
Alignment explanation
Indices: 6952602--6952803 Score: 183
Period size: 44 Copynumber: 4.6 Consensus size: 44
6952592 TAATTAGTAG
* * * * * *
6952602 CTTCAATCTGTTCCACTACAACTTCCGGGAAATAAGATTTGCT-A
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGA
** * ** *
6952646 TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAA
1 -CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGA
* * *
6952691 CTTCAACTTGCTCCAC-GCAGCTTTAGGGAGATAAGGTTTGTGA
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGA
* * *
6952734 TTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGC
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGA
* * *
6952778 CTTTAATCTGCTCCATTGCAACTTCA
1 CTTCAACCTGCTCCACTGCAACTTCA
6952804 AGGGGAGAAG
Statistics
Matches: 130, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
43 35 0.27
44 58 0.45
45 37 0.28
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGA
Found at i:6952985 original size:41 final size:42
Alignment explanation
Indices: 6952878--6952999 Score: 111
Period size: 41 Copynumber: 2.9 Consensus size: 42
6952868 ATAACTTATA
** ** *
6952878 GCTTTAATCTATTCCACTGCAACTTCAAGAAAATAAGATTTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAAG-GGATAAGACTTGT
* * * * * *
6952921 ACTTCAACCTGCCCCACTACAACTTCAAGGGATAAGGCTTG-
1 GCTTTAATCTGCTCCACTGCAACTTCAAGGGATAAGACTTGT
*
6952962 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 GCTTTAATCTGCTCCACTGCAACTTCAAGG-GATAAGA
6953000 TTTGCCATGG
Statistics
Matches: 60, Mismatches: 18, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
41 24 0.40
42 14 0.23
43 22 0.37
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
GCTTTAATCTGCTCCACTGCAACTTCAAGGGATAAGACTTGT
Found at i:6957395 original size:19 final size:20
Alignment explanation
Indices: 6957368--6957414 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
6957358 AATGAAAGTC
*
6957368 CAATACAAATG-ATGCAATG
1 CAATGCAAATGCATGCAATG
*
6957387 CAATGCAAATGCATGGAATG
1 CAATGCAAATGCATGCAATG
6957407 -AATGCAAA
1 CAATGCAAA
6957415 AGAAAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (20 bp):
CAATGCAAATGCATGCAATG
Found at i:6963265 original size:10 final size:10
Alignment explanation
Indices: 6963246--6963277 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
6963236 TTTTAGGATT
6963246 TTAT-TTTAA
1 TTATCTTTAA
6963255 TTATCTTTAA
1 TTATCTTTAA
6963265 TTATCTTTAA
1 TTATCTTTAA
6963275 TTA
1 TTA
6963278 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:6966812 original size:22 final size:22
Alignment explanation
Indices: 6966784--6966828 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
6966774 GGAACCAAAG
6966784 AAAGAGGCGCAAGGACGATTAA
1 AAAGAGGCGCAAGGACGATTAA
6966806 AAAGAGGCGCAAGGACGATTAA
1 AAAGAGGCGCAAGGACGATTAA
6966828 A
1 A
6966829 CCTAAATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.31, T:0.09
Consensus pattern (22 bp):
AAAGAGGCGCAAGGACGATTAA
Found at i:6967041 original size:15 final size:14
Alignment explanation
Indices: 6966996--6967045 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
6966986 TTCTTTTAGT
*
6966996 TTATTTTATTTCTA
1 TTATTTTATTTTTA
*
6967010 TTTATTTT-TTCTTA
1 -TTATTTTATTTTTA
6967024 TTATTTTATTATTTA
1 TTATTTTATT-TTTA
6967039 TTATTTT
1 TTATTTT
6967046 CAGATATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 7 0.23
14 6 0.20
15 17 0.57
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (14 bp):
TTATTTTATTTTTA
Found at i:6967936 original size:96 final size:97
Alignment explanation
Indices: 6967772--6967951 Score: 281
Period size: 96 Copynumber: 1.9 Consensus size: 97
6967762 CTAAGAATGA
* * *
6967772 GTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGGTGTCATTTCTCTTCGCGTCAAAAGGTTCGATA
1 GTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAATA
*
6967837 TATT-CTTAGGAAAAATAAAAATTAGGAGTAT
66 TATTCCTAAGGAAAAATAAAAATTAGGAGTAT
* * *
6967868 GTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTTTTCGCGTCAAAAGTTTCAATA
1 GTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAATA
*
6967933 TATTCCTAAGTAAAAATAA
66 TATTCCTAAGGAAAAATAA
6967952 GTAAATTAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 63 0.84
97 12 0.16
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (97 bp):
GTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAATA
TATTCCTAAGGAAAAATAAAAATTAGGAGTAT
Found at i:6968643 original size:10 final size:10
Alignment explanation
Indices: 6968624--6968655 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
6968614 TTTTAGGATT
6968624 TTAT-TTTAA
1 TTATCTTTAA
6968633 TTATCTTTAA
1 TTATCTTTAA
6968643 TTATCTTTAA
1 TTATCTTTAA
6968653 TTA
1 TTA
6968656 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:6975109 original size:2 final size:2
Alignment explanation
Indices: 6975102--6975135 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6975092 TTCAGCATGC
*
6975102 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6975136 GCGCCTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6976856 original size:62 final size:62
Alignment explanation
Indices: 6976759--6976887 Score: 258
Period size: 62 Copynumber: 2.1 Consensus size: 62
6976749 ATAAGAGCAA
6976759 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
6976821 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
6976883 GGTGT
1 GGTGT
6976888 TCTCACCGAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (62 bp):
GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
Found at i:6978034 original size:24 final size:24
Alignment explanation
Indices: 6978007--6978055 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
6977997 CAAGTCAATG
6978007 TAATAATA-AATAGTTAATTT-TATT
1 TAATAATATAA-A-TTAATTTATATT
6978031 TAATAATATAAATTAATTTATATT
1 TAATAATATAAATTAATTTATATT
6978055 T
1 T
6978056 TAATTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.30
24 14 0.61
25 2 0.09
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TAATAATATAAATTAATTTATATT
Found at i:6982433 original size:88 final size:88
Alignment explanation
Indices: 6982284--6982486 Score: 325
Period size: 88 Copynumber: 2.3 Consensus size: 88
6982274 TGACTCAGTC
* * *
6982284 ATGAAATTAGTTCCTTACCATGATGTTCCTATTGAAAATATTGAACAGGAAACTATTAGTCAAGT
1 ATGAAATTAGTTCCTTACCATGACGTACCTATTGAAAATATTGAACAGGAAACTATAAGTCAAGT
6982349 CGACAACAATTTTTATAAGAGTA
66 CGACAACAATTTTTATAAGAGTA
* * *
6982372 ATGAAATTAGTTTCTTACCATGACGTACCTATTGAAAATATTGAATAGGAAATTATAAGTCAAGT
1 ATGAAATTAGTTCCTTACCATGACGTACCTATTGAAAATATTGAACAGGAAACTATAAGTCAAGT
* * *
6982437 TGACCACAATTTTTATAAGAGTC
66 CGACAACAATTTTTATAAGAGTA
6982460 ATGAAATTAGTTCCTTACCATGACGTA
1 ATGAAATTAGTTCCTTACCATGACGTA
6982487 TTAGGAAATT
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (88 bp):
ATGAAATTAGTTCCTTACCATGACGTACCTATTGAAAATATTGAACAGGAAACTATAAGTCAAGT
CGACAACAATTTTTATAAGAGTA
Found at i:6993134 original size:36 final size:36
Alignment explanation
Indices: 6993072--6993140 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
6993062 CTAATAAGTT
*
6993072 GCTGCCAAAACAAGTTGAAACCAAACCTTTTGAATG
1 GCTGCCAAAACAAGCTGAAACCAAACCTTTTGAATG
* *
6993108 GCTGCCAAAACATGCT-AAGACTAAACCTTTTGA
1 GCTGCCAAAACAAGCTGAA-ACCAAACCTTTTGA
6993141 GTGGAAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 2 0.07
36 27 0.93
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (36 bp):
GCTGCCAAAACAAGCTGAAACCAAACCTTTTGAATG
Found at i:6993542 original size:5 final size:5
Alignment explanation
Indices: 6993532--6993560 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
6993522 AGTAAATAAA
6993532 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
6993561 ATAAAAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:6994414 original size:14 final size:14
Alignment explanation
Indices: 6994395--6994422 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6994385 TTACTTTCCT
6994395 CCTATAATTTATCA
1 CCTATAATTTATCA
6994409 CCTATAATTTATCA
1 CCTATAATTTATCA
6994423 AAAAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
CCTATAATTTATCA
Found at i:6996478 original size:16 final size:16
Alignment explanation
Indices: 6996445--6996478 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6996435 GGTCAATGTT
* *
6996445 AACATTAATGGGAGAC
1 AACATTAATGGAAAAC
6996461 AACATTAATGGAAAAC
1 AACATTAATGGAAAAC
6996477 AA
1 AA
6996479 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGAAAAC
Found at i:6997063 original size:28 final size:28
Alignment explanation
Indices: 6997031--6997087 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
6997021 TCGTAGTATG
6997031 CTCTGTGGTTGCAGTTTAAACTGATCTT
1 CTCTGTGGTTGCAGTTTAAACTGATCTT
6997059 CTCTGTGGTTGCAGTTTAAACTGATCTT
1 CTCTGTGGTTGCAGTTTAAACTGATCTT
6997087 C
1 C
6997088 CACATCAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (28 bp):
CTCTGTGGTTGCAGTTTAAACTGATCTT
Found at i:6999329 original size:21 final size:21
Alignment explanation
Indices: 6999303--6999343 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6999293 AGACAAGCGA
* *
6999303 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
6999324 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
6999344 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:6999689 original size:27 final size:27
Alignment explanation
Indices: 6999651--6999705 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
6999641 CTTGGGAGTT
6999651 AGCGCAATTACCGAAAGGTAAAAGGGC
1 AGCGCAATTACCGAAAGGTAAAAGGGC
6999678 AGCGCAATTACCGAAAGGTAAAAGGGC
1 AGCGCAATTACCGAAAGGTAAAAGGGC
6999705 A
1 A
6999706 ATCGGATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.29, T:0.11
Consensus pattern (27 bp):
AGCGCAATTACCGAAAGGTAAAAGGGC
Found at i:7006506 original size:134 final size:134
Alignment explanation
Indices: 7006261--7006566 Score: 452
Period size: 134 Copynumber: 2.3 Consensus size: 134
7006251 ATAGGCCGAG
* * * * * * *
7006261 AATTACAGATCTTATCCCCATGTACCGGCTATGGAACATATCGAAAATGGCGAGTCTTATCTCCA
1 AATTGCAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATAGCGAGTCCTATCTCCA
* * *
7006326 TGTATCGGTTATGGAGCAGATTTTAACCACCGGCCTTATCTCTCTGAGGTAGCAAAAGAGTAAGT
66 TGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAAAGAGCAAGT
7006391 TGAA
131 TGAA
*
7006395 AATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAAATAGCGAGTCCTATCTCCA
1 AATTGCAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATAGCGAGTCCTATCTCCA
* * * *
7006460 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
66 TGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAAAGAGCAAGT
7006525 TGAA
131 TGAA
*
7006529 AATTGTA-AGTCTTATCTCCATGTATCGGCTATGGAGCA
1 AATTGCAGA-TCTTATCTCCATGTATCGGCTATGGAGCA
7006567 CACTAAAAAT
Statistics
Matches: 154, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
133 1 0.01
134 153 0.99
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (134 bp):
AATTGCAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATAGCGAGTCCTATCTCCA
TGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAAAGAGCAAGT
TGAA
Found at i:7006676 original size:84 final size:83
Alignment explanation
Indices: 7006572--7007362 Score: 1116
Period size: 84 Copynumber: 9.4 Consensus size: 83
7006562 GAGCACACTA
* ***
7006572 AAAATTACAGATCTCTCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGTGCCTTAATCCCCTAA
1 AAAA-TACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAA-CCCCTAA
* * *
7006637 GTAGTAGGGTAATAAGCTGG
64 GCAGTAGGGTAACAGGCTGG
* *
7006657 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAA
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAA-CCCCTAAG
7006722 CAGTAGGGTAACAGGCTGG
65 CAGTAGGGTAACAGGCTGG
* * *
7006741 AAAGTACAGATCTCCCCTAAACAGTAGTGGAGCAGATCAAAGACAACAAGCCTTAACCCCCTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAA-CCCCTAAG
*
7006806 CAGTAGGATAACAGGCTGG
65 CAGTAGGGTAACAGGCTGG
* *
7006825 AAAATACATATCTCCCCTAAACAGTAGTGGAGCAGATCAAAGACAGCAAGCCTTAATCCCCTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAA-CCCCTAAG
7006890 CAGTAGGGTAACAGGCTGG
65 CAGTAGGGTAACAGGCTGG
* * *
7006909 AAAATACAGATATCCCCTAAACAGTCGTGGAGCAGATCGAAGATAGCAAGCCTTAACCCCTTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCC-TAAG
7006974 CAGTAGGGTAACAGGCTGG
65 CAGTAGGGTAACAGGCTGG
* *
7006993 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCAAAAACAGCAAGCCTTAACCCCTTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCC-TAAG
* *
7007058 CAATAGGGTAATAGGCTGG
65 CAGTAGGGTAACAGGCTGG
* *
7007077 AAAATACAGATCTCCCTTAAACAGTAGTGGAGCAGATCGAAGGCAGCAAGCCTTAACTCCCTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC-CCCTAAG
* *
7007142 AAGTAGGGTAACAAGCTGG
65 CAGTAGGGTAACAGGCTGG
* * *
7007161 AAAATTACAGATCTTATCCCTAAATAGCAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCCTT
1 AAAA-TACAGATC-T-CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCC-T
*
7007226 AAGCAGTGGGGTAACAGGCTGG
62 AAGCAGTAGGGTAACAGGCTGG
* ** * *
7007248 AAAATACAGATCTCCCTTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCTTTAATCCTCTAAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAA-CCCCTAAG
* * *
7007313 CTGTAGGGTAACAAGCTAG
65 CAGTAGGGTAACAGGCTGG
7007332 AAAATACAGATCT-CCCTAAACAGTAGTGGAG
1 AAAATACAGATCTCCCCTAAACAGTAGTGGAG
7007363 TAGACTGAAG
Statistics
Matches: 637, Mismatches: 62, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
83 21 0.03
84 522 0.82
85 19 0.03
86 12 0.02
87 63 0.10
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (83 bp):
AAAATACAGATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCCTAAGC
AGTAGGGTAACAGGCTGG
Found at i:7006683 original size:40 final size:40
Alignment explanation
Indices: 7006629--7007019 Score: 106
Period size: 40 Copynumber: 9.4 Consensus size: 40
7006619 TGTGCCTTAA
** *
7006629 TCCCCTAAGTAGTAGGGTAATAAGCTGGAAAATACAGATC
1 TCCCCTAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
* * * * *
7006669 TCCCCTAAACAGTAGTGG-AGC-AGATCGAAGATAGCA-AGCC
1 TCCCCTAAACAGTAG-GGTAACAAGCTGGAAAATA-CAGA-TC
* *
7006709 TTAACCCCCTAAACAGTAGGGTAACAGGCTGGAAAGTACAGATC
1 -T---CCCCTAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
* * * * *
7006753 TCCCCTAAACAGTAGTGG-AGC-AGAT-CAAAGACAACA-AGCC
1 TCCCCTAAACAGTAG-GGTAACAAGCTGGAAA-A-TACAGA-TC
* * * *
7006793 TTAACCCCCTAAGCAGTAGGATAACAGGCTGGAAAATACATATC
1 -T---CCCCTAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
* * * * * *
7006837 TCCCCTAAACAGTAGTGG-AGC-AGAT-CAAAGACAGCAAGCCTTAA
1 TCCCCTAAACAGTAG-GGTAACAAGCTGGAAA-ATA-C-AG--AT-C
* * *
7006881 TCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATA
1 TCCCCTAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
* * * * * *
7006921 TCCCCTAAACAGTCGTGG-AGC-AGATCGAAGATAGCA-AGCC
1 TCCCCTAAACAGTAG-GGTAACAAGCTGGAAAATA-CAGA-TC
* *
7006961 TTAACCCCTTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATC
1 -T--CCCC-TAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
7007005 TCCCCTAAACAGTAG
1 TCCCCTAAACAGTAG
7007020 TGGAGCAGAT
Statistics
Matches: 244, Mismatches: 65, Indels: 84
0.62 0.17 0.21
Matches are distributed among these distances:
38 6 0.02
39 26 0.11
40 80 0.33
41 16 0.07
43 17 0.07
44 68 0.28
45 25 0.10
46 6 0.02
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (40 bp):
TCCCCTAAACAGTAGGGTAACAAGCTGGAAAATACAGATC
Found at i:7009581 original size:3 final size:3
Alignment explanation
Indices: 7009573--7009641 Score: 86
Period size: 3 Copynumber: 23.3 Consensus size: 3
7009563 GGGTAAAAAT
* * * * *
7009573 ATA ATA ATA ATA AT- ATA ATA GTA GTA ATA ACA ATG GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7009620 ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
7009642 ATAGTGATAG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7009868 original size:3 final size:3
Alignment explanation
Indices: 7009860--7009968 Score: 123
Period size: 3 Copynumber: 36.7 Consensus size: 3
7009850 AGTGATTTAA
7009860 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
7009908 AAT AAT AAT AGT AGT AGT AGT AGT AA- AA- AAT AAT AGT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7009954 AAC AAT AAT AGAT AA
1 AAT AAT AAT A-AT AA
7009969 CATTAAATTT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
2 4 0.04
3 89 0.93
4 3 0.03
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7011935 original size:43 final size:43
Alignment explanation
Indices: 7011859--7012362 Score: 271
Period size: 43 Copynumber: 11.6 Consensus size: 43
7011849 ATCTATAATT
* *
7011859 TTCAGCCTGTTACCCTACTGTTTAGAGGG-TTAAGATTTGTAAA
1 TTCAGCCTGTTACCCTACTGCTTAG-GGGTTTAAGATCTGTAAA
*
7011902 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCT-T--C
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA-G---ATCTGTAAA
* * ** * *
7011946 TTC-GATCTATTTTCCTACTGTTTA-GGGTGATAAGATCTGT-AA
1 TTCAG-CCTGTTACCCTACTGCTTAGGGGT-TTAAGATCTGTAAA
* ** ** ***
7011988 TTCGGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAA
* * *
7012032 TTC-GATCTGTTTCCCTACTGCTTAGGGG-GTAAGATCTTGTAAA
1 TTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGATC-TGTAAA
* ** ** ***
7012075 TTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAA
* * * *
7012119 TTC-GATCTGTTTCCCTACTACTTA-GGGTGATAAGATCTGTAAA
1 TTCAG-CCTGTTACCCTACTGCTTAGGGGT-TTAAGATCTGTAAA
* * * * **
7012162 TTCAGCCTGTTACCTTACTACTTAGGGGTTTAAGGCTCAT-CACC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA-GATC-TGTAAA
* * * *
7012206 TTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAA
1 TTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAA
* ** ** **
7012249 TTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAA
* * *
7012293 TTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
1 TTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAA
*
7012336 TTTAGCCTGTTACCCTACTGCTTAGGG
1 TTCAGCCTGTTACCCTACTGCTTAGGG
7012363 AGATAAGGCT
Statistics
Matches: 335, Mismatches: 96, Indels: 60
0.68 0.20 0.12
Matches are distributed among these distances:
40 4 0.01
41 1 0.00
42 27 0.08
43 153 0.46
44 145 0.43
45 1 0.00
46 1 0.00
47 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (43 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAA
Found at i:7011964 original size:44 final size:44
Alignment explanation
Indices: 7011908--7012326 Score: 210
Period size: 44 Copynumber: 9.6 Consensus size: 44
7011898 TAAATTCAGC
*
7011908 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
* * * * * **
7011952 CTATTTTCCTACTGTTTA-GGGTGATAA-G---ATCTGTAATTCGGC
1 CTGTTTCCCTACTGCTTAGGGGT-TTAAGGCCCATCT-T-CTTCGAT
* **
7011994 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
* ** * * ** *
7012038 CTGTTTCCCTACTGCTTAGGGG-GTAA-GATCTTGTAAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCT-TCTTCGA-T
* * **
7012081 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
* * * *
7012125 CTGTTTCCCTACTACTTA-GGGTGATAA-G---ATCTGTAAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGT-TTAAGGCCCATCT-T--CTTCGA-T
* * * * **
7012168 CTGTTACCTTACTACTTAGGGGTTTAAGGCTCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
* * * *
7012212 CTGTTTCCCTACTGCTTAGGGGGTTAA-G---ATTTGTAAATTC-AG
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCT-T--CTTCGAT
* **
7012254 CTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGAT
1 C-TGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
*
7012299 CTGTTTCCCTACTGCTTAGGGGGTTAAG
1 CTGTTTCCCTACTGCTTAGGGGTTTAAG
7012327 ATCTGTAAAT
Statistics
Matches: 271, Mismatches: 71, Indels: 66
0.66 0.17 0.16
Matches are distributed among these distances:
40 9 0.03
41 1 0.00
42 28 0.10
43 91 0.34
44 127 0.47
45 7 0.03
46 3 0.01
47 5 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCTTCTTCGAT
Found at i:7012371 original size:87 final size:87
Alignment explanation
Indices: 7011865--7012362 Score: 757
Period size: 87 Copynumber: 5.7 Consensus size: 87
7011855 AATTTTCAGC
* * * *
7011865 CTGTTACCCTACTGTTTAGAGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
**
7011930 TTTAAGGCCCATCTTCTTCGAT
66 TTTAAGGCCCATCACCTTCGAT
* * * * * *
7011952 CTATTTTCCTACTGTTTAGGGTGATAAGATCTGT-AATTCGGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
*
7012016 TTTAAGGCCCATCGCCTTCGAT
66 TTTAAGGCCCATCACCTTCGAT
*
7012038 CTGTTTCCCTACTGCTTAGGGGG-TAAGATCTTGTAAATTCAGCCTGTTACCCTACTGCTTAAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
*
7012102 GTTTAAGGCCCATCGCCTTCGAT
65 GTTTAAGGCCCATCACCTTCGAT
* * * * *
7012125 CTGTTTCCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCTTACTACTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
*
7012190 TTTAAGGCTCATCACCTTCGAT
66 TTTAAGGCCCATCACCTTCGAT
* *
7012212 CTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
7012277 TTTAAGGCCCATCACCTTCGAT
66 TTTAAGGCCCATCACCTTCGAT
*
7012299 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
7012363 AGATAAGGCT
Statistics
Matches: 374, Mismatches: 34, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
85 7 0.02
86 71 0.19
87 289 0.77
88 7 0.02
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAGGCCCATCACCTTCGAT
Found at i:7020814 original size:18 final size:19
Alignment explanation
Indices: 7020773--7020815 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
7020763 AGTGCGTATG
7020773 ATGCAATGCTGATGCATGA
1 ATGCAATGCTGATGCATGA
*
7020792 GTGCAATG-T-ATGCAATGA
1 ATGCAATGCTGATGC-ATGA
7020810 ATGCAA
1 ATGCAA
7020816 AAAAGAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 10 0.48
19 7 0.33
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (19 bp):
ATGCAATGCTGATGCATGA
Found at i:7021169 original size:3 final size:3
Alignment explanation
Indices: 7021155--7021226 Score: 83
Period size: 3 Copynumber: 24.3 Consensus size: 3
7021145 GGGTAAAAAT
* * * * * *
7021155 ATA ATT ATA ATA AT- ATA ATA GTA GTA ATA ACA ATG GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7021202 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7021227 ATAGTGATAG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7021457 original size:3 final size:3
Alignment explanation
Indices: 7021449--7021547 Score: 162
Period size: 3 Copynumber: 32.7 Consensus size: 3
7021439 AGTGATTTAA
7021449 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
7021497 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AGT AAT AAC AAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
7021546 AA
1 AA
7021548 CATTAAATTT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
3 86 0.97
4 3 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7021653 original size:32 final size:32
Alignment explanation
Indices: 7021617--7021683 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
7021607 ATAAAAGAAC
7021617 ATAAAATATATGTAAGTAAAAGTATAACAATA
1 ATAAAATATATGTAAGTAAAAGTATAACAATA
7021649 ATAAAATATATGTAAGTAAAAGTATAACAATA
1 ATAAAATATATGTAAGTAAAAGTATAACAATA
7021681 ATA
1 ATA
7021684 GAGGATAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (32 bp):
ATAAAATATATGTAAGTAAAAGTATAACAATA
Found at i:7021674 original size:16 final size:15
Alignment explanation
Indices: 7021618--7021674 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
7021608 TAAAAGAACA
7021618 TAAAATATATGTAAG
1 TAAAATATATGTAAG
**
7021633 TAAAAGTATAACAATAA-
1 TAAAA-TAT-A-TGTAAG
7021650 TAAAATATATGTAAG
1 TAAAATATATGTAAG
7021665 TAAAAGTATA
1 TAAAA-TATA
7021675 ACAATAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 11 0.33
16 10 0.30
17 6 0.18
18 3 0.09
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.30
Consensus pattern (15 bp):
TAAAATATATGTAAG
Found at i:7023141 original size:15 final size:14
Alignment explanation
Indices: 7023121--7023151 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7023111 ACATCTGCTA
7023121 TTATTATATTTCTAT
1 TTATTATATTT-TAT
7023136 TTATTATATTTTAT
1 TTATTATATTTTAT
7023150 TT
1 TT
7023152 CTATTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATTATATTTTAT
Found at i:7023150 original size:20 final size:20
Alignment explanation
Indices: 7023122--7023159 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7023112 CATCTGCTAT
7023122 TATTATATTTCTATTTATTA
1 TATTATATTTCTATTTATTA
*
7023142 TATTTTATTTCTATTTAT
1 TATTATATTTCTATTTAT
7023160 ATACTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTATATTTCTATTTATTA
Found at i:7023170 original size:20 final size:20
Alignment explanation
Indices: 7023126--7023170 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7023116 TGCTATTATT
*
7023126 ATATTTCTATTTATTATATT
1 ATATTTCTATTTATTATATA
*
7023146 TTATTTCTATTTA-TATACTA
1 ATATTTCTATTTATTATA-TA
7023166 ATATT
1 ATATT
7023171 ATTTTCATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTCTATTTATTATATA
Found at i:7026921 original size:40 final size:40
Alignment explanation
Indices: 7026866--7026946 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7026856 ATTTATAGTC
7026866 ATCAAAAATCCTAAAATGTAGCATTCAAAATTAAGAGTAA
1 ATCAAAAATCCTAAAATGTAGCATTCAAAATTAAGAGTAA
7026906 ATCAAAAATCCTAAAATGTAGCATTCAAAATTAAGAGTAA
1 ATCAAAAATCCTAAAATGTAGCATTCAAAATTAAGAGTAA
7026946 A
1 A
7026947 AATCCTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (40 bp):
ATCAAAAATCCTAAAATGTAGCATTCAAAATTAAGAGTAA
Found at i:7028244 original size:48 final size:48
Alignment explanation
Indices: 7028173--7028268 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
7028163 CTAAGGGGTA
* *
7028173 AAACAAAGAGGGTAGGCTGTTTTATTTGGGAAATGAAATAGGTTAGAT
1 AAACAAAGAGGGTAGGCTGTTTTATTTGGAAAAAGAAATAGGTTAGAT
* *
7028221 AAACAAATAGGGTAGGCTGTTTTATTTGGAAAAAGAAATGGGTTAGAT
1 AAACAAAGAGGGTAGGCTGTTTTATTTGGAAAAAGAAATAGGTTAGAT
7028269 CCTAATGTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.39, C:0.04, G:0.28, T:0.29
Consensus pattern (48 bp):
AAACAAAGAGGGTAGGCTGTTTTATTTGGAAAAAGAAATAGGTTAGAT
Found at i:7032300 original size:25 final size:27
Alignment explanation
Indices: 7032263--7032315 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
7032253 TCAAACATGC
7032263 ATTTAGGTCAATTTAAC-CCTAAGGGT
1 ATTTAGGTCAATTTAACTCCTAAGGGT
* *
7032289 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAACTCCTAAGGGT
7032315 A
1 A
7032316 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAAGGGT
Found at i:7033837 original size:31 final size:32
Alignment explanation
Indices: 7033801--7033892 Score: 168
Period size: 31 Copynumber: 2.9 Consensus size: 32
7033791 CTTACCATGC
7033801 CCATCATCCATTAACTATTAAAATGCTAAT-G
1 CCATCATCCATTAACTATTAAAATGCTAATGG
7033832 CCATCATCCATTAACTATTAAAATGCTAATGG
1 CCATCATCCATTAACTATTAAAATGCTAATGG
*
7033864 CCATCATACATTAACTATTAAAATGCTAA
1 CCATCATCCATTAACTATTAAAATGCTAA
7033893 AATGCATACA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
31 30 0.51
32 29 0.49
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.32
Consensus pattern (32 bp):
CCATCATCCATTAACTATTAAAATGCTAATGG
Found at i:7036966 original size:27 final size:27
Alignment explanation
Indices: 7036936--7037065 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
7036926 ATTACCAAAG
* *
7036936 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
7036963 TACCTTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
7036990 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
7037017 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
7037044 TACCCTCGATTTAAAAAATTAC
1 TACCCTCGATTTACAAAATTAC
7037066 TAAAATACCC
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:7036994 original size:54 final size:54
Alignment explanation
Indices: 7036936--7037093 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 54
7036926 ATTACCAAAG
* * * *
7036936 TACCCCCGATTTACATAATTACCGTTTTA-CCTTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTAAAAAATTACCATTTTACCCTT-GATTTACAAAATTACCGTTT
* * * * **
7036990 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTAAAAAATTACCATTTTACCCTTGATTTACAAAATTACCGTTT
* *** *
7037044 TACCCTCGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTAAAAAATTACCATTTTACCCTTGATTTACAAAATTACC
7037094 AAAATACCTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 82 0.95
55 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTAAAAAATTACCATTTTACCCTTGATTTACAAAATTACCGTTT
Found at i:7037074 original size:27 final size:27
Alignment explanation
Indices: 7037044--7037267 Score: 172
Period size: 27 Copynumber: 8.3 Consensus size: 27
7037034 ATTATTGTTT
* * *
7037044 TACCCTCGATTTAAAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
7037071 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
7037098 TA-CCTTCGA-TCAGTAAAATTACCAAAA
1 TACCCTT-GATTTA-CAAAATTACCAAAA
* ** *
7037125 TACCC-TGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
7037151 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
7037178 TACCCCTGATTTACAAAATTA-CATAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
*
7037205 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
* * **
7037234 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
7037261 TACCCTT
1 TACCCTT
7037268 ATGTTCCGTA
Statistics
Matches: 161, Mismatches: 25, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
26 27 0.17
27 106 0.66
28 9 0.06
29 19 0.12
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:7037091 original size:81 final size:81
Alignment explanation
Indices: 7036943--7037092 Score: 174
Period size: 81 Copynumber: 1.9 Consensus size: 81
7036933 AAGTACCCCC
* * * **** * *
7036943 GATTTACATAATTACCGTTTTACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCAAAATACCCTCGATTTACAAAA
7037008 TTACTATTTTACCCTT
66 TTACTATTTTACCCTT
** * * *
7037024 GATTTACAGAATTATTGTTTTACCCTCGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCAAAATACCCTCGATTTACAAAA
7037089 TTAC
66 TTAC
7037093 CAAAATACCT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 55 1.00
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.41
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCAAAATACCCTCGATTTACAAAA
TTACTATTTTACCCTT
Found at i:7037157 original size:80 final size:83
Alignment explanation
Indices: 7037057--7037265 Score: 207
Period size: 80 Copynumber: 2.6 Consensus size: 83
7037047 CCTCGATTTA
* *
7037057 AAAAATTACTA-AAATACCCTTGGTTTACAAAATTACCAAAATA-CCTTCGA-TCAGTAAAATTA
1 AAAAATTAC-AGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-GATTCA-CAAAATTA
* *
7037119 CCA-AAATACCC-TG-GTTTGT
63 -CATAAATACCCTTGACTTTCT
* ** ** *
7037138 -AAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAT
1 AAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTCACAAAATTACAT
7037202 AAATACCCTTGACTTTCT
66 AAATACCCTTGACTTTCT
* * **
7037220 AAAAATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACCC
1 AAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCC
7037266 TTATGTTCCG
Statistics
Matches: 102, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
79 2 0.02
80 53 0.52
81 7 0.07
82 4 0.04
83 36 0.35
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (83 bp):
AAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTCACAAAATTACAT
AAATACCCTTGACTTTCT
Found at i:7038442 original size:25 final size:25
Alignment explanation
Indices: 7038413--7038460 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7038403 TTATAATATG
* * *
7038413 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
7038438 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
7038461 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:7038511 original size:9 final size:9
Alignment explanation
Indices: 7038499--7038555 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
7038489 TTTGATAAAC
7038499 ATGATATGT
1 ATGATATGT
*
7038508 ATGATATGCAC
1 ATGATATG--T
*
7038519 ATGACATGT
1 ATGATATGT
*
7038528 ATGATATGCAC
1 ATGATATG--T
7038539 ATGATATGT
1 ATGATATGT
7038548 ATGATATG
1 ATGATATG
7038556 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:7038522 original size:20 final size:20
Alignment explanation
Indices: 7038497--7038567 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
7038487 ATTTTGATAA
7038497 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
7038517 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
7038537 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
7038557 ACATGAGATGT
1 ACATGATATGT
7038568 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:7038544 original size:11 final size:11
Alignment explanation
Indices: 7038508--7038562 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
7038498 CATGATATGT
7038508 ATGATATGCAC
1 ATGATATGCAC
* *
7038519 ATGACATG--T
1 ATGATATGCAC
7038528 ATGATATGCAC
1 ATGATATGCAC
*
7038539 ATGATATG--T
1 ATGATATGCAC
7038548 ATGATATGCAC
1 ATGATATGCAC
7038559 ATGA
1 ATGA
7038563 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:7038697 original size:25 final size:25
Alignment explanation
Indices: 7038614--7038743 Score: 160
Period size: 25 Copynumber: 5.2 Consensus size: 25
7038604 AGGAAGTACA
*
7038614 AAAGGGCTTATGCCCTAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
7038637 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
7038662 AAAAGGGCTTATGCCCCAGTTATGAT
1 -AAAGGGCTTATGCCCCAGTTATGAT
*
7038688 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
7038712 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
7038740 AAAG
1 AAAG
7038744 CAGCTATGCT
Statistics
Matches: 95, Mismatches: 4, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
23 21 0.22
24 9 0.09
25 31 0.33
26 26 0.27
27 4 0.04
28 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:7038714 original size:49 final size:50
Alignment explanation
Indices: 7038613--7038743 Score: 171
Period size: 49 Copynumber: 2.6 Consensus size: 50
7038603 GAGGAAGTAC
*
7038613 AAAAGGGCTTATGCCCTAGTTAT--TAAAGGGCTTATGCCCCAGTTATGAT
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT-AT
7038662 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT-T
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATAT
*
7038711 AAAAGAGGC-TAGGCCTCCAGTTATATGATAAAG
1 AAAAG-GGCTTATGCC-CCAG-T-TATGATAAAG
7038744 CAGCTATGCT
Statistics
Matches: 74, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
49 33 0.45
50 7 0.09
51 24 0.32
52 10 0.14
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATAT
Found at i:7044531 original size:3 final size:3
Alignment explanation
Indices: 7044509--7044577 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
7044499 ACATTATAAG
* *
7044509 ATT ATT -TT ATT A-T ATAT ATT ATT ATTT ATT ATAT ATT ATT TTT CATC
1 ATT ATT ATT ATT ATT AT-T ATT ATT A-TT ATT AT-T ATT ATT ATT -ATT
*
7044556 ATT ATT TTT A-T ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT AT
7044578 ATTTTACTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 6 0.11
3 37 0.70
4 10 0.19
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7044531 original size:17 final size:17
Alignment explanation
Indices: 7044509--7044619 Score: 66
Period size: 17 Copynumber: 6.2 Consensus size: 17
7044499 ACATTATAAG
7044509 ATTATTTTATTATATAT
1 ATTATTTTATTATATAT
*
7044526 ATTATTAT-TTATTATAT
1 ATTATTTTATTA-TATAT
*
7044543 ATTATTTT-TCATCATTATT
1 ATTATTTTATTAT-A-TA-T
* *
7044562 TTTATATTATTATTATAT
1 ATTATTTTATTA-TATAT
* *
7044580 TTTACTTGTATTATATAT
1 ATTA-TTTTATTATATAT
7044598 -TTATTAATTATTTATATAT
1 ATTATT--TTA-TTATATAT
7044617 ATT
1 ATT
7044620 GTTCTTACAT
Statistics
Matches: 74, Mismatches: 9, Indels: 19
0.73 0.09 0.19
Matches are distributed among these distances:
16 6 0.08
17 25 0.34
18 14 0.19
19 23 0.31
20 5 0.07
21 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (17 bp):
ATTATTTTATTATATAT
Found at i:7044561 original size:13 final size:11
Alignment explanation
Indices: 7044518--7044580 Score: 58
Period size: 11 Copynumber: 5.6 Consensus size: 11
7044508 GATTATTTTA
*
7044518 TTATATATATTA
1 TTATAT-TATTT
7044530 TTAT-TTA-TT
1 TTATATTATTT
*
7044539 ATATATTATTT
1 TTATATTATTT
7044550 TTCATCATTATTT
1 TT-AT-ATTATTT
*
7044563 TTATATTATTA
1 TTATATTATTT
7044574 TTATATT
1 TTATATT
7044581 TTACTTGTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
9 4 0.09
10 5 0.12
11 17 0.40
12 8 0.19
13 9 0.21
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTATTT
Found at i:7048771 original size:13 final size:14
Alignment explanation
Indices: 7048742--7048768 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7048732 AAGATATTCT
7048742 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
7048756 TTTTCTAAATAAA
1 TTTTCTAAATAAA
7048769 TTTGAACCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:7048811 original size:14 final size:16
Alignment explanation
Indices: 7048792--7048828 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7048782 CAATATCCTT
7048792 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
7048806 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
7048822 TTT-CATC
1 TTTGCATC
7048829 ACATTGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:7057265 original size:206 final size:206
Alignment explanation
Indices: 7056938--7057414 Score: 882
Period size: 206 Copynumber: 2.3 Consensus size: 206
7056928 CGGAGAGCAG
7056938 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
*
7057003 TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTCAATGGAGAGCAGATACACA
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTCAATAGAGAGCAGATACACA
*
7057068 GCAGATCTGACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
131 GCAGATCTGACCTTCAAACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
7057133 ACAAGGAACAA
196 ACAAGGAACAA
7057144 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
* * *
7057209 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACATA
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTCAATAGAGAGCAGATACACA
7057274 GCAGATCTGACCTTCAAACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
131 GCAGATCTGACCTTCAAACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
7057339 ACAAGGAACAA
196 ACAAGGAACAA
* * *
7057350 ATCGAAGACATAGCTGATTTGGCTTACACGTGCTTATGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
7057415 GAGAACAAAT
Statistics
Matches: 263, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
206 263 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (206 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTCAATAGAGAGCAGATACACA
GCAGATCTGACCTTCAAACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
ACAAGGAACAA
Found at i:7059200 original size:11 final size:11
Alignment explanation
Indices: 7059184--7059289 Score: 55
Period size: 11 Copynumber: 9.2 Consensus size: 11
7059174 ATAAGATTAT
7059184 TTTATTATATA
1 TTTATTATATA
7059195 TTTATTAT-TA
1 TTTATTATATA
7059205 TATTA-TATATTA
1 T-TTATTATA-TA
7059217 TTT-TTCATCATTA
1 TTTATT-AT-A-TA
7059230 TTT-TTATAT-
1 TTTATTATATA
7059239 TATTATTATATTTTA
1 T-TTATTATA---TA
7059254 CTTGTATTATATA
1 -TT-TATTATATA
7059267 TTTATTA-ATTA
1 TTTATTATA-TA
7059278 TTTA-TATATA
1 TTTATTATATA
7059288 TT
1 TT
7059290 GTTCTTACAT
Statistics
Matches: 79, Mismatches: 0, Indels: 33
0.71 0.00 0.29
Matches are distributed among these distances:
9 1 0.01
10 16 0.20
11 32 0.41
12 9 0.11
13 11 0.14
14 1 0.01
15 1 0.01
16 8 0.10
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (11 bp):
TTTATTATATA
Found at i:7059202 original size:3 final size:3
Alignment explanation
Indices: 7059179--7059247 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
7059169 ACATTATAAG
* *
7059179 ATT ATT -TT ATT ATAT ATTT ATT ATT A-T ATT ATAT ATT ATT TTT CATC
1 ATT ATT ATT ATT AT-T A-TT ATT ATT ATT ATT AT-T ATT ATT ATT -ATT
*
7059226 ATT ATT TTT A-T ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT AT
7059248 ATTTTACTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 6 0.11
3 38 0.72
4 8 0.15
5 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7059203 original size:19 final size:19
Alignment explanation
Indices: 7059179--7059286 Score: 86
Period size: 19 Copynumber: 5.9 Consensus size: 19
7059169 ACATTATAAG
7059179 ATTATTTTATTATATATTT
1 ATTATTTTATTATATATTT
*
7059198 ATTATTATATTATATA-TT
1 ATTATTTTATTATATATTT
* *
7059216 ATT-TTTCATCAT-TATTT
1 ATTATTTTATTATATATTT
*
7059233 -TTATATTATTAT-TATATT
1 ATTATTTTATTATATAT-TT
*
7059251 -TTACTTGTATTATATATTT
1 ATTA-TTTTATTATATATTT
*
7059270 ATTA-ATTATTTATATAT
1 ATTATTTTA-TTATATAT
7059287 ATTGTTCTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
16 4 0.06
17 17 0.24
18 12 0.17
19 32 0.45
20 6 0.08
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (19 bp):
ATTATTTTATTATATATTT
Found at i:7059231 original size:13 final size:11
Alignment explanation
Indices: 7059113--7059250 Score: 62
Period size: 12 Copynumber: 11.5 Consensus size: 11
7059103 ATTCTATATA
*
7059113 TATATATATTTA
1 TATAT-TATTTT
7059125 TATATTATTATT
1 TATATTATT-TT
* *
7059137 TGTTTTATTTT
1 TATATTATTTT
* *
7059148 TTTACCTTACTTT
1 TATA--TTATTTT
**
7059161 TATATTATACAT
1 TATATTAT-TTT
**
7059173 TATAAGATTATT
1 TATATTATT-TT
7059185 T-TATTATATATT
1 TATATTAT-T-TT
*
7059197 TATTATTATATTA
1 TA-TATTAT-TTT
7059210 TATATTATTTT
1 TATATTATTTT
7059221 TCATCATTATTTT
1 T-AT-ATTATTTT
*
7059234 TATATTATTAT
1 TATATTATTTT
7059245 TATATT
1 TATATT
7059251 TTACTTGTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
11 31 0.32
12 37 0.38
13 21 0.22
14 8 0.08
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (11 bp):
TATATTATTTT
Found at i:7059269 original size:37 final size:37
Alignment explanation
Indices: 7059186--7059289 Score: 99
Period size: 37 Copynumber: 2.8 Consensus size: 37
7059176 AAGATTATTT
* * * *
7059186 TATTATATATTTAT-TATTA-TATTATATATTATTTT
1 TATTATATATTTTTATATTATTATTATATTTTACTTG
*
7059221 TCATCAT-TATTTTTATATTATTATTATATTTTACTTG
1 T-ATTATATATTTTTATATTATTATTATATTTTACTTG
7059258 TATTATATATTTATTA-ATTATTTATATATATT
1 TATTATATATTT-TTATATTA-TTAT-TATATT
7059290 GTTCTTACAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
35 7 0.12
36 13 0.23
37 23 0.41
38 7 0.12
39 6 0.11
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (37 bp):
TATTATATATTTTTATATTATTATTATATTTTACTTG
Found at i:7059597 original size:31 final size:32
Alignment explanation
Indices: 7059554--7059614 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
7059544 AATTATTAAT
7059554 TATTTATTTATTATGCATTATTTTA-AAATGA
1 TATTTATTTATTATGCATTATTTTATAAATGA
**
7059585 TATTT-TTATATTATGTGTTATTTTATAAAT
1 TATTTATT-TATTATGCATTATTTTATAAAT
7059615 TCTTTTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (32 bp):
TATTTATTTATTATGCATTATTTTATAAATGA
Found at i:7061334 original size:22 final size:22
Alignment explanation
Indices: 7061309--7061352 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7061299 AGGTATACGT
7061309 ATGACCATTAAAATATAATTTA
1 ATGACCATTAAAATATAATTTA
7061331 ATGACCATTAAAATATAATTTA
1 ATGACCATTAAAATATAATTTA
7061353 GAATTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (22 bp):
ATGACCATTAAAATATAATTTA
Found at i:7064286 original size:27 final size:27
Alignment explanation
Indices: 7064256--7064361 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 27
7064246 CACATGACGG
*
7064256 AGTGTGAGATGCTCCGCGAAGTGTCAA
1 AGTGTGAGATGCTCCGCGAAGTGGCAA
* * * * *
7064283 AGTGCGAAATACTCCGTGAAGAGGCAA
1 AGTGTGAGATGCTCCGCGAAGTGGCAA
** **
7064310 ACAGTGAGATGGAACCGCGAAGTGGCAA
1 AGTGTGAGAT-GCTCCGCGAAGTGGCAA
* * *
7064338 GGTGTGAGTTGACTCTGCGAAGTG
1 AGTGTGAGATG-CTCCGCGAAGTG
7064362 TCAAGGTGCA
Statistics
Matches: 55, Mismatches: 22, Indels: 3
0.69 0.28 0.04
Matches are distributed among these distances:
27 28 0.51
28 27 0.49
ACGTcount: A:0.29, C:0.17, G:0.35, T:0.19
Consensus pattern (27 bp):
AGTGTGAGATGCTCCGCGAAGTGGCAA
Found at i:7065170 original size:67 final size:67
Alignment explanation
Indices: 7065091--7065308 Score: 167
Period size: 67 Copynumber: 3.2 Consensus size: 67
7065081 GCCTAAGCCC
* *
7065091 ATTCAGGTAACAGTGGTACTGGGTCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCC
1 ATTCAGATAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCC
7065156 TT
66 TT
* * * * * * *** *
7065158 ATTCAGATAACA---GTA-TGGCCCATAGGCCCATTTCAAAATAC-ATGCAACATCAGTAAACAT
1 ATTCAGATAACAGTGGTACTGGGCCAGA-GCCCTTTTCAGATTACAAT--AA-A-CTG-GGCCTT
**
7065218 ATGCAAGCTT
60 A-GC-CCCTT
** *
7065228 ATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCC
1 ATTCAGATAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCC
7065293 TT
66 TT
*
7065295 ATTTAGATAACAGT
1 ATTCAGATAACAGT
7065309 ATGGCCCATA
Statistics
Matches: 107, Mismatches: 31, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
63 8 0.07
64 16 0.15
65 2 0.02
66 1 0.01
67 28 0.26
68 5 0.05
69 5 0.05
70 14 0.13
71 1 0.01
72 2 0.02
73 16 0.15
74 9 0.08
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (67 bp):
ATTCAGATAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCC
TT
Found at i:7065192 original size:64 final size:64
Alignment explanation
Indices: 7065119--7065329 Score: 165
Period size: 64 Copynumber: 3.2 Consensus size: 64
7065109 CTGGGTCAGA
* *
7065119 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
* * * *** * ** * *
7065183 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCTTATTTGGGTAACAGTGGTAC
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC-CCCTTATTTAGATAACA---GTA-
* *
7065247 TGGGCCAGA-
55 TGGCCCATAG
*
7065256 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
7065320 GCCCATTTCA
1 GCCCATTTCA
7065330 AAATACATGC
Statistics
Matches: 104, Mismatches: 30, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 2 0.02
66 1 0.01
67 15 0.14
68 5 0.05
69 5 0.05
70 14 0.13
71 1 0.01
72 2 0.02
73 16 0.15
74 9 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
Found at i:7065342 original size:137 final size:137
Alignment explanation
Indices: 7065096--7065344 Score: 480
Period size: 137 Copynumber: 1.8 Consensus size: 137
7065086 AGCCCATTCA
*
7065096 GGTAACAGTGGTACTGGGTCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
7065161 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
7065226 TTATTTG
131 TTATTTG
7065233 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
*
7065298 TAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACAT
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACAT
7065345 TATGCAAGCC
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 110 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (137 bp):
GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
TTATTTG
Done.