Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 281 of 378
Found at i:84689214 original size:87 final size:87
Alignment explanation
Indices: 84689085--84689302 Score: 244
Period size: 87 Copynumber: 2.5 Consensus size: 87
84689075 TACTCGATTT
* * ** * *
84689085 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCA
1 CGCACACTTAGTGCCA--TATATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AGCACGCA
* * *
84689147 CACACAGTGCCGTATTTTTCCAGCT
63 CACACAGTGCCATATATTTCCAGCA
* * **
84689172 TGCACACTTAGTGCCATATATTTCCAGCACGTACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAGCACGCACAC
**
84689237 TTAGTGCCATATATTTCCAGCA
66 ACAGTGCCATATATTTCCAGCA
*
84689259 CGCACACTTAGTGCCATATATTTCCAGTACGCACACTTAGTGCC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
84689303 GATCTCGTCA
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
85 2 0.02
86 4 0.04
87 101 0.92
88 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (87 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAGCACGCACAC
ACAGTGCCATATATTTCCAGCA
Found at i:84697181 original size:29 final size:29
Alignment explanation
Indices: 84697147--84697277 Score: 194
Period size: 29 Copynumber: 4.6 Consensus size: 29
84697137 CCCTCGAGCT
** * * *
84697147 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
84697176 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84697205 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84697234 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84697263 CG--CACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
84697278 CTCGTCACCG
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 13 0.14
29 82 0.86
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:84708834 original size:28 final size:28
Alignment explanation
Indices: 84708769--84708840 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
84708759 ATAGTGAATC
* *
84708769 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
84708798 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
84708826 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84708841 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:84712495 original size:29 final size:29
Alignment explanation
Indices: 84712467--84712626 Score: 266
Period size: 29 Copynumber: 5.5 Consensus size: 29
84712457 CCTCCGAGCT
** * * *
84712467 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
84712496 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84712525 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84712554 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84712583 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
84712612 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
84712627 GATCTCGTCA
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 124 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:84712509 original size:87 final size:87
Alignment explanation
Indices: 84712409--84712618 Score: 237
Period size: 87 Copynumber: 2.4 Consensus size: 87
84712399 TACTCGATTT
* * *
84712409 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCA
1 CGCACACTTAGTGCCA--TATATTTCAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCA
* * *
84712471 CACCCAGTGCCGTATTTTTCCAGCT
63 CACCCAGTGCCATATATTTCCAGCA
* * ** **
84712496 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
**
84712561 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
84712583 CGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCAAGCACGCACAC
84712619 TTAGTGCCGA
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
85 2 0.02
86 4 0.04
87 96 0.91
88 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:84721682 original size:2 final size:2
Alignment explanation
Indices: 84721675--84721709 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
84721665 TGATTAAATC
84721675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84721710 GTTAGTATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:84721947 original size:27 final size:26
Alignment explanation
Indices: 84721895--84721989 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 26
84721885 GCAGATACTC
** *
84721895 CACAGCTCGTGTGAGCAGGCTCATTTT
1 CACAGCTCGTGTGAGCATTCT-AATTT
84721922 CACAGCTCGTGTGAGCATTCTAATTT
1 CACAGCTCGTGTGAGCATTCTAATTT
* * * * * *
84721948 -ACAACTCATATGAGTATTTTGA-TT
1 CACAGCTCGTGTGAGCATTCTAATTT
84721972 CACAGCTCGTGTGAGCAT
1 CACAGCTCGTGTGAGCAT
84721990 ACATGTACAA
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
24 2 0.04
25 29 0.54
26 4 0.07
27 19 0.35
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATTCTAATTT
Found at i:84727059 original size:2 final size:2
Alignment explanation
Indices: 84727052--84727082 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
84727042 ACAACATGTT
*
84727052 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84727083 CAATTCAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:84731488 original size:20 final size:20
Alignment explanation
Indices: 84731451--84731560 Score: 80
Period size: 20 Copynumber: 5.5 Consensus size: 20
84731441 CATTTCTATT
** * *
84731451 CATATAAATTGTAATTCATT
1 CATATAAACAGTAGTTCATC
*
84731471 CATATAACCAGTAGTTCATC
1 CATATAAACAGTAGTTCATC
* *
84731491 CGTATAAATAGTAGTTCAT-
1 CATATAAACAGTAGTTCATC
*
84731510 CAGTA-ATAACAGTAATTCATC
1 CA-TATA-AACAGTAGTTCATC
* * * *
84731531 CGTATCAATAGTAATTCATC
1 CATATAAACAGTAGTTCATC
84731551 CATATAAACA
1 CATATAAACA
84731561 CATATCTTAT
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
19 2 0.03
20 66 0.96
21 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (20 bp):
CATATAAACAGTAGTTCATC
Found at i:84731498 original size:40 final size:39
Alignment explanation
Indices: 84731453--84731557 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 39
84731443 TTTCTATTCA
* *
84731453 TATAAATTGTAATTCATTCATATAACCAGTAGTTCATCCG
1 TATAAATAGTAATTCATTCATATAA-CAGTAATTCATCCG
*
84731493 TATAAATAGTAGTTCA-TCAGTAATAACAGTAATTCATCCG
1 TATAAATAGTAATTCATTCA-T-ATAACAGTAATTCATCCG
* *
84731533 TATCAATAGTAATTCATCCATATAA
1 TATAAATAGTAATTCATTCATATAA
84731558 ACACATATCT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
39 7 0.12
40 43 0.77
41 6 0.11
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (39 bp):
TATAAATAGTAATTCATTCATATAACAGTAATTCATCCG
Found at i:84731763 original size:23 final size:23
Alignment explanation
Indices: 84731728--84731832 Score: 101
Period size: 23 Copynumber: 4.6 Consensus size: 23
84731718 TAAGCTGATG
* *
84731728 AACAATAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATCGAGCTGA
*
84731751 AACGGTAAGCTCTATCGAGCT-A
1 AACAGTAAGCTCTATCGAGCTGA
84731773 AACAGTAAGCTC-ATACGAGCTGA
1 AACAGTAAGCTCTAT-CGAGCTGA
* *
84731796 AA-TGCTAAGCTCTAAT-GAGCTAAA
1 AACAG-TAAGCTCT-ATCGAGCT-GA
84731820 AACAGTAAGCTCT
1 AACAGTAAGCTCT
84731833 TACGAGTTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
21 2 0.03
22 19 0.28
23 33 0.49
24 11 0.16
25 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATCGAGCTGA
Found at i:84731793 original size:45 final size:46
Alignment explanation
Indices: 84731744--84731838 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 46
84731734 AAGCTCTATT
*
84731744 GAGCTGAAACGGTAAGCTCT-ATCGAGCT-AAACAGTAAGCTCATAC
1 GAGCTGAAACGCTAAGCTCTAAT-GAGCTAAAACAGTAAGCTCATAC
* *
84731789 GAGCTGAAATGCTAAGCTCTAATGAGCTAAAAACAGTAAGCTCTTAC
1 GAGCTGAAACGCTAAGCTCTAATGAGCT-AAAACAGTAAGCTCATAC
84731836 GAG
1 GAG
84731839 TTGATATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
45 23 0.52
46 2 0.05
47 19 0.43
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (46 bp):
GAGCTGAAACGCTAAGCTCTAATGAGCTAAAACAGTAAGCTCATAC
Found at i:84732032 original size:2 final size:2
Alignment explanation
Indices: 84732025--84732053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84732015 TTCTCAAATC
84732025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84732054 ATTCAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84736175 original size:27 final size:27
Alignment explanation
Indices: 84736156--84736682 Score: 635
Period size: 27 Copynumber: 19.6 Consensus size: 27
84736146 AAAATGAATA
* * *
84736156 TTTTGCCCTTATATGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * *
84736183 TTTTGTCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736210 TTTTGCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * *
84736237 TTTTGACCTTATGTGGTAAGACGATTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * *
84736264 TTTTGCCCTTATGTGTTAAGATAACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736291 TTTTGCCCTTATGTGGTAAAAT-ACCTA
1 TTTTGCCCTTATGTGGTAAGATGA-CTG
* * *
84736318 TTTTGCCCTTATGTAGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
*
84736345 TTTTGCCCTTATGTGGTAAGATGACTC
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736372 TTTTGCCTTTATGTGGTAAGATGACTC
1 TTTTGCCCTTATGTGGTAAGATGACTG
*
84736399 TTTTGCCCTTATATGGTAAGATGACTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
*
84736426 TTTTGCCCTTATGTGGTAAGATGATTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736453 TTTTGCCCTTATGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * * *
84736480 TTTTTCCCCTATGTTGTAAGATAACTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
84736507 TTTTGCCCTTATGTGGTAAGATGACTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
*
84736534 TTTTGCCCTTATTTGGTAAGATGACTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * *
84736561 TTTTGCCCTTATGTGATAAAATGACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736588 TTTTGCCCTTATATGGTAAGATGACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* * * * *
84736615 TTTTTCTCTTGTGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAGATGACTG
* *
84736642 TTTTGTCCTTATATGGTAAGATGACTG
1 TTTTGCCCTTATGTGGTAAGATGACTG
*
84736669 ATTTGCCC-TATGTG
1 TTTTGCCCTTATGTG
84736683 ATGTATATAT
Statistics
Matches: 433, Mismatches: 65, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
26 6 0.01
27 426 0.98
28 1 0.00
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAGATGACTG
Found at i:84737017 original size:18 final size:19
Alignment explanation
Indices: 84736994--84737042 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
84736984 AGGACTTGTA
84736994 TACTGTTACTACA-CTGAT
1 TACTGTTACTACAGCTGAT
*
84737012 TACTGTTACTA-AGCTGTT
1 TACTGTTACTACAGCTGAT
*
84737030 TATTGTTACTACA
1 TACTGTTACTACA
84737043 ATGGGCCAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 1 0.04
18 25 0.93
19 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (19 bp):
TACTGTTACTACAGCTGAT
Found at i:84740668 original size:129 final size:129
Alignment explanation
Indices: 84740436--84740691 Score: 422
Period size: 129 Copynumber: 2.0 Consensus size: 129
84740426 AGGATTTTTT
*
84740436 ATATGTGATTACGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTACGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACC
* * * * *
84740501 ATGTCTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTAGCATCG
66 ACGTCTGGGACGTTAGCATCGATATATGATTACATGTAAGACCACGTCTGGGACGTTAGCATCG
*
84740565 ATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACC
1 ATATGTGATTACGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACC
* * *
84740630 ACGTCTGGGACGTTAGCATTGATATATGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
66 ACGTCTGGGACGTTAGCATCGATATATGATTACATGTAAGACCACGTCTGGGACGTTAGCAT
84740692 TGTATGATAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (129 bp):
ATATGTGATTACGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACC
ACGTCTGGGACGTTAGCATCGATATATGATTACATGTAAGACCACGTCTGGGACGTTAGCATCG
Found at i:84740693 original size:43 final size:43
Alignment explanation
Indices: 84740436--84740691 Score: 358
Period size: 43 Copynumber: 6.0 Consensus size: 43
84740426 AGGATTTTTT
*
84740436 ATATGTGATTACGTGTAAGACC-CTATCTGGGACAG-TGGCATCG
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
*
84740479 ATATGTGATTACGTGTAAGACCATGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
84740522 ATATGTGATTACGTGTAAGACCACGTCTGGGATGTTAGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
84740565 ATATGTGATTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
* * *
84740608 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTAGCATTG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
84740651 ATATATGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
84740692 TGTATGATAT
Statistics
Matches: 194, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
42 3 0.02
43 189 0.97
44 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:84747056 original size:26 final size:24
Alignment explanation
Indices: 84747026--84747075 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
84747016 AAATAAAAAA
*
84747026 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
84747052 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
84747076 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:84747801 original size:7 final size:7
Alignment explanation
Indices: 84747789--84747843 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 7
84747779 TTATAAATTT
84747789 ACCCTAA
1 ACCCTAA
84747796 ACCCTAA
1 ACCCTAA
84747803 ACCCTAAA
1 ACCCT-AA
* *
84747811 ATCTTAA
1 ACCCTAA
*
84747818 ACCTTAA
1 ACCCTAA
84747825 ACCCTAAA
1 ACCCT-AA
84747833 ACCCTAA
1 ACCCTAA
84747840 ACCC
1 ACCC
84747844 AAAGGCTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 30 0.71
8 12 0.29
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (7 bp):
ACCCTAA
Found at i:84747818 original size:22 final size:22
Alignment explanation
Indices: 84747789--84747843 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
84747779 TTATAAATTT
84747789 ACCCTAAACCCTAAACCCTAAA
1 ACCCTAAACCCTAAACCCTAAA
* * *
84747811 ATCTTAAACCTTAAACCCTAAA
1 ACCCTAAACCCTAAACCCTAAA
84747833 ACCCTAAACCC
1 ACCCTAAACCC
84747844 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (22 bp):
ACCCTAAACCCTAAACCCTAAA
Found at i:84747841 original size:15 final size:14
Alignment explanation
Indices: 84747789--84747843 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
84747779 TTATAAATTT
84747789 ACCCTAAACCCTAA
1 ACCCTAAACCCTAA
* *
84747803 ACCCTAAAATCTTAA
1 ACCCT-AAACCCTAA
*
84747818 ACCTTAAACCCTAAA
1 ACCCTAAACCCT-AA
84747833 ACCCTAAACCC
1 ACCCTAAACCC
84747844 AAAGGCTGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 10 0.30
15 23 0.70
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (14 bp):
ACCCTAAACCCTAA
Found at i:84748855 original size:17 final size:17
Alignment explanation
Indices: 84748833--84748875 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
84748823 GTATTGAATT
84748833 TACTTTATATTTAAAAA
1 TACTTTATATTTAAAAA
84748850 TACTTTATATTTAAAAA
1 TACTTTATATTTAAAAA
*
84748867 TAATTTATA
1 TACTTTATA
84748876 AAAATTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TACTTTATATTTAAAAA
Found at i:84754572 original size:40 final size:40
Alignment explanation
Indices: 84754517--84754724 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
84754507 TGAATGATAC
* * *
84754517 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84754557 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84754597 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84754637 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84754677 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84754717 CC-GGCTAA
1 CCGGGCTAA
84754725 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84762778 original size:40 final size:40
Alignment explanation
Indices: 84762723--84762930 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
84762713 TGAATGATAC
* * *
84762723 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84762763 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84762803 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84762843 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84762883 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84762923 CC-GGCTAA
1 CCGGGCTAA
84762931 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84770988 original size:40 final size:40
Alignment explanation
Indices: 84770933--84771138 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
84770923 TGAATGATAC
* * *
84770933 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84770973 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84771013 -CGGG-TAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84771051 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84771091 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84771131 CC-GGCTAA
1 CCGGGCTAA
84771139 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 34 0.23
39 13 0.09
40 101 0.67
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84771052 original size:78 final size:80
Alignment explanation
Indices: 84770929--84771138 Score: 302
Period size: 78 Copynumber: 2.7 Consensus size: 80
84770919 CATTTGAATG
* *
84770929 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
84770993 ATTTGTGCGAGTTGTT
65 ATTTGTGCGAGTTGCT
* *
84771009 ATA-TCGGG-TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
84771072 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * *
84771087 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
84771139 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
78 66 0.56
79 16 0.14
80 35 0.30
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:84780585 original size:40 final size:40
Alignment explanation
Indices: 84780440--84780684 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
84780430 TCTTCGGAAT
* ** *
84780440 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
84780479 TTAACCCGGGTATAGCAACT--CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
84780517 TTAGCCCGGATAT-ACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
84780556 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
84780596 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
84780636 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
84780676 TTAGCCCGG
1 TTAGCCCGG
84780685 GTATCATTCA
Statistics
Matches: 189, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
37 5 0.03
38 28 0.15
39 34 0.18
40 121 0.64
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:84788811 original size:40 final size:40
Alignment explanation
Indices: 84788756--84788909 Score: 256
Period size: 40 Copynumber: 3.9 Consensus size: 40
84788746 TGCTAGCGGT
84788756 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
*
84788796 CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
84788836 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
* * *
84788876 TC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 -CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
84788910 GTATCATTCA
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 107 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
Found at i:84793172 original size:40 final size:40
Alignment explanation
Indices: 84793117--84793324 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
84793107 TGAATGATAC
* * *
84793117 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84793157 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84793197 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84793237 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84793277 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84793317 CC-GGCTAA
1 CCGGGCTAA
84793325 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84801369 original size:40 final size:40
Alignment explanation
Indices: 84801314--84801521 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
84801304 TGAATGATAC
* * *
84801314 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
84801354 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84801394 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84801434 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84801474 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84801514 CC-GGCTAA
1 CCGGGCTAA
84801522 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.03
40 145 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84801447 original size:80 final size:80
Alignment explanation
Indices: 84801310--84801521 Score: 329
Period size: 80 Copynumber: 2.7 Consensus size: 80
84801300 CATTTGAATG
* *
84801310 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
84801374 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
84801390 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
84801455 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * *
84801470 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
84801522 ATTCCGAAGA
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
79 6 0.05
80 113 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:84805065 original size:43 final size:43
Alignment explanation
Indices: 84804919--84805070 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
84804909 TATCCCAAAT
* * * *
84804919 ATGGTATTACATGTTATCAC-ATATCGATGCCACTGTCTCAGAC
1 ATGGTCTTACATGTAATCACAATA-CGATGCCAATGTCCCAGAC
* * * *
84804962 AGGGTCTTACACT-AAATCA-ATTAACGATGCCAATGTCCCGGAC
1 ATGGTCTTACA-TGTAATCACAAT-ACGATGCCAATGTCCCAGAC
* * *
84805005 ATGGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCCAGAC
84805048 ATGGTCTTACATGTAATCACAAT
1 ATGGTCTTACATGTAATCACAAT
84805071 TTGATAACCT
Statistics
Matches: 87, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
43 83 0.95
44 4 0.05
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCCAGAC
Found at i:84815217 original size:15 final size:15
Alignment explanation
Indices: 84815197--84815228 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
84815187 GTGAGGTTTA
84815197 ATGGCCACTTTATTG
1 ATGGCCACTTTATTG
84815212 ATGGCCACTTTATTG
1 ATGGCCACTTTATTG
84815227 AT
1 AT
84815229 TTCTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (15 bp):
ATGGCCACTTTATTG
Found at i:84815379 original size:1 final size:1
Alignment explanation
Indices: 84815373--84815398 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
84815363 CCAAAGGGTC
84815373 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
84815399 GCAGATGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:84816061 original size:30 final size:30
Alignment explanation
Indices: 84816015--84816075 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
84816005 TTTTGGTAAA
84816015 ATACTTCCCTTCAGGTGATATTTGTGTCAG
1 ATACTTCCCTTCAGGTGATATTTGTGTCAG
* *
84816045 ATACTTTCCTTTAGGTGATATTTGTGTCAG
1 ATACTTCCCTTCAGGTGATATTTGTGTCAG
84816075 A
1 A
84816076 CACAATGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (30 bp):
ATACTTCCCTTCAGGTGATATTTGTGTCAG
Found at i:84830929 original size:2 final size:2
Alignment explanation
Indices: 84830922--84830948 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
84830912 ATATCAAATT
84830922 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
84830949 TATTTTACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84832394 original size:2 final size:2
Alignment explanation
Indices: 84832387--84832417 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
84832377 AGTATACCTT
84832387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84832418 TAAAATAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84838790 original size:12 final size:12
Alignment explanation
Indices: 84838773--84838806 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
84838763 TAAGCTTACT
84838773 TGTTTTACTTGA
1 TGTTTTACTTGA
84838785 TGTTTTACTTGA
1 TGTTTTACTTGA
84838797 TGTTTT-CTTG
1 TGTTTTACTTG
84838807 TAGATATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.12, C:0.09, G:0.18, T:0.62
Consensus pattern (12 bp):
TGTTTTACTTGA
Found at i:84841504 original size:27 final size:27
Alignment explanation
Indices: 84841456--84841614 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
84841446 GCGAGGCTGC
* *
84841456 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
84841483 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
84841509 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
84841536 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
84841563 CAGACATATGTGGCAGAGCCACGAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
84841590 CAGATAATTGTGGCATAGTCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
84841615 GACGCTTCCT
Statistics
Matches: 110, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
26 10 0.09
27 95 0.86
28 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:84841556 original size:54 final size:54
Alignment explanation
Indices: 84841474--84841614 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
84841464 GTGACGAAGT
* * *
84841474 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGACATATGTGGCAGAGC
*
84841528 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGACATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGACATATGTGGCAGAGC
* *
84841582 CACGAGATCAGATAATTGTGGCATAGTCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
84841615 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGACATATGTGGCAGAGC
Found at i:84843267 original size:26 final size:26
Alignment explanation
Indices: 84843236--84843343 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
84843226 TGAAATGCCC
*
84843236 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
84843262 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * * *
84843288 ATTATGGAATATTTCCCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
84843314 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84843340 ATCA
1 ATCA
84843344 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84843875 original size:43 final size:43
Alignment explanation
Indices: 84843827--84843980 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
84843817 GTTATCAAGA
* * *
84843827 TGTGATTACATATAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
** * *
84843870 TGTGATTA-AGTGTAAGACCACGTCGGGGACATTGGCATCGTTT
1 TGTGATTACA-TGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * * * *
84843913 TATGATTTCGTGTAAGACCCTATCCGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* *
84843955 ATGTGATAACATGTAAGACTATATCT
1 -TGTGATTACATGTAAGACCATATCT
84843981 AGGATATGGC
Statistics
Matches: 87, Mismatches: 21, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
42 2 0.02
43 85 0.98
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:84845254 original size:109 final size:109
Alignment explanation
Indices: 84845063--84845291 Score: 440
Period size: 109 Copynumber: 2.1 Consensus size: 109
84845053 ATATAACATG
84845063 GTATTCATTTAATGATTAAATATTCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATAC
1 GTATTCATTTAATGATTAAATATTCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATAC
84845128 ATGTGTCTCTCATACTCATTTTACCTTGTTTATTATAGTACCAC
66 ATGTGTCTCTCATACTCATTTTACCTTGTTTATTATAGTACCAC
84845172 GTATTCATTTAATGATTAAATATTCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATAC
1 GTATTCATTTAATGATTAAATATTCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATAC
84845237 ATGTGTCTCTCATACTCATTTTACCTTGTTTATTATAGTACCAC
66 ATGTGTCTCTCATACTCATTTTACCTTGTTTATTATAGTACCAC
* *
84845281 TTATACATTTA
1 GTATTCATTTA
84845292 TACCAAGATT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 118 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (109 bp):
GTATTCATTTAATGATTAAATATTCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATAC
ATGTGTCTCTCATACTCATTTTACCTTGTTTATTATAGTACCAC
Found at i:84850140 original size:27 final size:28
Alignment explanation
Indices: 84850082--84850151 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
84850072 AAATTTGTAC
*
84850082 AGCACTAAGTGTGAGAGTTTGATCATAG
1 AGCACTAAGTGTGCGAGTTTGATCATAG
* *
84850110 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAG
*
84850137 AGCACTAAGCGTGCG
1 AGCACTAAGTGTGCG
84850152 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAG
Found at i:84853153 original size:48 final size:48
Alignment explanation
Indices: 84853010--84853237 Score: 191
Period size: 48 Copynumber: 4.9 Consensus size: 48
84853000 GGTTATATAT
* * * * **
84853010 GATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCATCAATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
** * * **
84853058 GATTTCGTGTAAGACCATAG-CTGGG---T--TATTGGCATCG-CTATGT
1 GATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGAC-ATAC
* *
84853101 GATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
* * **
84853149 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
* * * *
84853197 GATCCAATGTAAGACCATTTCTGGGATATGGAATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
84853238 CTACCATGTG
Statistics
Matches: 144, Mismatches: 27, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
45 1 0.01
46 1 0.01
48 108 0.75
49 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
Found at i:84853164 original size:91 final size:93
Alignment explanation
Indices: 84853004--84853237 Score: 233
Period size: 91 Copynumber: 2.5 Consensus size: 93
84852994 CATTAGGGTT
* * * ** ** *
84853004 ATATATGATCCCATGTAAGACCATGT-TTGGGACATGGCTTTGGCATCAATATGTGATTTCGTGT
1 ATATGTGATCCCATGTAAGACCATGTCTT-GGACATGGCATTGGCATCAACATACGATCCCATGT
* *
84853068 AAGACCATAG-CTGGG-T-TATTGGCATCG
65 AAGACCAT-GTCTGGGATGCATTGACATCG
* * *
84853095 CTATGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGACCTACGATCCCATGTA
1 ATATGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCAACATACGATCCCATGTA
84853160 AGACCATGTCTGGGACATGGCATTGACATCG
66 AGACCATGTCTGGG--AT-GCATTGACATCG
* * * * *
84853191 ATATGTGATCCAATGTAAGACCATTTCTGGGATATGGAATTGGCATC
1 ATATGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATC
84853238 CTACCATGTG
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
90 1 0.01
91 63 0.54
92 2 0.02
94 1 0.01
96 50 0.43
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (93 bp):
ATATGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCAACATACGATCCCATGTA
AGACCATGTCTGGGATGCATTGACATCG
Found at i:84869040 original size:40 final size:40
Alignment explanation
Indices: 84868934--84869117 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
84868924 TGCTGGAAAT
* * * * * **
84868934 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
84868974 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
84869014 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
84869052 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
84869093 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
84869118 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:84872213 original size:60 final size:60
Alignment explanation
Indices: 84872139--84872277 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
84872129 AACTATGTTA
* *
84872139 ATATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACGACCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCTCATAC-TGTAAT-GGGCTACGACCCAGATTAATACTG
* * * * *
84872199 ATATGGGCTAGGCCCAACATACTCTGATACTGTAATGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTCATACTGTAATGGGCTACGACCCAGATTAATACTG
*
84872259 ATATAGGCTAAGGCCCAAT
1 ATATGGGCT-AGGCCCAAT
84872278 TAACTCTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
60 47 0.70
61 18 0.27
62 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTCATACTGTAATGGGCTACGACCCAGATTAATACTG
Found at i:84879621 original size:23 final size:23
Alignment explanation
Indices: 84879591--84879663 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 23
84879581 TTTGCCGATT
84879591 AGGCACTTTATGTGTCGTATATC
1 AGGCACTTTATGTGTCGTATATC
* *
84879614 AGGCACTTTATGTGTCGTATTTT
1 AGGCACTTTATGTGTCGTATATC
* **
84879637 AGGCACCTCGTGTGTC--ATATC
1 AGGCACTTTATGTGTCGTATATC
84879658 AGGCAC
1 AGGCAC
84879664 CTCGTATGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.21
23 34 0.79
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (23 bp):
AGGCACTTTATGTGTCGTATATC
Found at i:84879684 original size:21 final size:21
Alignment explanation
Indices: 84879639--84879684 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
84879629 CGTATTTTAG
* *
84879639 GCACCTCGTGTGTCATATCAG
1 GCACCTCGTATGTCATATCAA
* *
84879660 GCACCTCGTATGTCGTTTCAA
1 GCACCTCGTATGTCATATCAA
84879681 GCAC
1 GCAC
84879685 TTATGTATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (21 bp):
GCACCTCGTATGTCATATCAA
Found at i:84880680 original size:25 final size:25
Alignment explanation
Indices: 84880642--84880691 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
84880632 GAATAATTTA
* *
84880642 AATATTTGATATTGCCTAATAAATG
1 AATATCTGACATTGCCTAATAAATG
* *
84880667 AATATCTGACATTGCTTAGTAAATG
1 AATATCTGACATTGCCTAATAAATG
84880692 CCAAGCCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (25 bp):
AATATCTGACATTGCCTAATAAATG
Found at i:84882023 original size:21 final size:22
Alignment explanation
Indices: 84881981--84882035 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
84881971 TGAAGTACTT
* *
84881981 ACACGGGCGTGT-ACCCTCTTC
1 ACACGGACGTGTGCCCCTCTTC
*
84882002 ACATGGACGTGTGCCCCT-TTC
1 ACACGGACGTGTGCCCCTCTTC
*
84882023 ACACGGGCGTGTG
1 ACACGGACGTGTG
84882036 TGGCCTTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.15, C:0.33, G:0.29, T:0.24
Consensus pattern (22 bp):
ACACGGACGTGTGCCCCTCTTC
Found at i:84900012 original size:13 final size:13
Alignment explanation
Indices: 84899994--84900021 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84899984 ATTGATGATA
84899994 TATTGATCTATTC
1 TATTGATCTATTC
84900007 TATTGATCTATTC
1 TATTGATCTATTC
84900020 TA
1 TA
84900022 AAATAGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (13 bp):
TATTGATCTATTC
Found at i:84910755 original size:49 final size:49
Alignment explanation
Indices: 84910682--84910812 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
84910672 ACACCAAAGT
* * * *
84910682 CGATGACATGTTCCAGACAAGTCTTACACTGACTTTCATATATTGAG-GC
1 CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCATATA-TCAGTGC
* * * * * *
84910731 CGATTCCATGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCAGTGT
1 CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCATATATCAGTGC
*
84910780 TGATGCCATGTCCCAGACAAGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAAGTCTTACACTGAC
84910813 ACACAACAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 3 0.05
49 63 0.95
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCATATATCAGTGC
Found at i:84910896 original size:48 final size:48
Alignment explanation
Indices: 84910834--84911044 Score: 227
Period size: 46 Copynumber: 4.5 Consensus size: 48
84910824 TGACGCCAAA
* *
84910834 TCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATG
* * * * *
84910882 TCCCAGACATGTCTTACACTAGC-TCT-CATCTCAATGCCGATGCATT
1 TCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATG
* * * * *
84910928 TCCCAAACATGTCTTTCACTGGCTTGTATATCTCGAGGTCGACGCATG
1 TCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATG
* *
84910976 TCCCAGACATGTCTTACACTGGCTCTCGTA-A--T-GTGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCT-T-GTATATCTCGAGGCCGATGCATG
*
84911022 TCCCAAACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
84911045 ACACATATCA
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
46 67 0.50
47 5 0.04
48 58 0.43
49 2 0.01
50 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
TCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATG
Found at i:84911053 original size:94 final size:93
Alignment explanation
Indices: 84910834--84911044 Score: 284
Period size: 94 Copynumber: 2.2 Consensus size: 93
84910824 TGACGCCAAA
* * *
84910834 TCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTAC
1 TCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCTGACGCATGTCCCAGACATGTCTTAC
*
84910899 ACTAGCTCTCATCTCAATGCCGATGCATT
66 ACTAGCTCTCA-CTCAATGCCGATGCATG
* *
84910928 TCCCAAACATGTCTTTCACTGGCTTGTATATCTCGAGG-TCGACGCATGTCCCAGACATGTCTTA
1 TCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCT-GACGCATGTCCCAGACATGTCTTA
* *
84910992 CACTGGCTCTC-GT-AATGTGGCCGATGCATG
65 CACTAGCTCTCACTCAA--T-GCCGATGCATG
84911022 TCCCAAACATGTCTTACACTAGC
1 TCCCAAACATGTCTTACACTAGC
84911045 ACACATATCA
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 2 0.02
94 98 0.95
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
TCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCTGACGCATGTCCCAGACATGTCTTAC
ACTAGCTCTCACTCAATGCCGATGCATG
Found at i:84911648 original size:20 final size:19
Alignment explanation
Indices: 84911612--84911661 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
84911602 TATAGCAACT
*
84911612 CACATTTTCAATTATTTCA
1 CACATTTACAATTATTTCA
*
84911631 CACATTTACAACTTATTTTA
1 CACATTTACAA-TTATTTCA
84911651 CA-ACTTTACAA
1 CACA-TTTACAA
84911662 AATAGCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (19 bp):
CACATTTACAATTATTTCA
Found at i:84918456 original size:27 final size:28
Alignment explanation
Indices: 84918425--84918481 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
84918415 ATTTTTTATT
84918425 AAATGAGCTATTTG-GGA-TAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
84918452 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
84918481 A
1 A
84918482 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 3 0.12
29 11 0.42
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:84921824 original size:4 final size:4
Alignment explanation
Indices: 84921815--84921855 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
84921805 TTGCTTGTAC
*
84921815 ATAA ATAA ATAA ATAAA ATGA A-AA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA A
84921856 GGCTGAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 2 0.06
4 27 0.82
5 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:84923476 original size:17 final size:18
Alignment explanation
Indices: 84923432--84923466 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
84923422 TGTTTACAAA
84923432 AATTTAAATTTATTTCCC
1 AATTTAAATTTATTTCCC
84923450 AATTTAAATTTATTTCC
1 AATTTAAATTTATTTCC
84923467 AATATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTTAAATTTATTTCCC
Found at i:84926460 original size:52 final size:52
Alignment explanation
Indices: 84926403--84926507 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
84926393 GACACATGCC
84926403 CGTGTGTCTAACCATGTGAACTCTAATAGGCTATTTTCCAAGCCTTTAGTCA
1 CGTGTGTCTAACCATGTGAACTCTAATAGGCTATTTTCCAAGCCTTTAGTCA
*
84926455 CGTGTGTCTAACCATGTGGACTCTAATAGGCTATTTTCCAAGCCTTTAGTCA
1 CGTGTGTCTAACCATGTGAACTCTAATAGGCTATTTTCCAAGCCTTTAGTCA
84926507 C
1 C
84926508 TCATTTCTAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (52 bp):
CGTGTGTCTAACCATGTGAACTCTAATAGGCTATTTTCCAAGCCTTTAGTCA
Found at i:84931421 original size:18 final size:17
Alignment explanation
Indices: 84931383--84931486 Score: 66
Period size: 18 Copynumber: 5.6 Consensus size: 17
84931373 TAAAAAATTT
84931383 AAAATATTAAAAATTAGA
1 AAAATA-TAAAAATTAGA
84931401 AAAATATAAAAATCGTA-A
1 AAAATATAAAAAT--TAGA
* *
84931419 AAAATATAAAATTTTATA
1 AAAATATAAAA-ATTAGA
* *
84931437 AAAATCGTAAAAAATTATA
1 AAAAT-AT-AAAAATTAGA
* *
84931456 AAATATATAGAAATATAAAA
1 AAA-ATATA-AAA-ATTAGA
84931476 AAAATATAAAA
1 AAAATATAAAA
84931487 TTTTATAAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
17 9 0.13
18 28 0.39
19 21 0.30
20 13 0.18
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (17 bp):
AAAATATAAAAATTAGA
Found at i:84931437 original size:28 final size:28
Alignment explanation
Indices: 84931405--84931495 Score: 114
Period size: 28 Copynumber: 3.2 Consensus size: 28
84931395 ATTAGAAAAA
84931405 TATAAAAATCGTAAAAAATATAAAATTT
1 TATAAAAATCGTAAAAAATATAAAATTT
*
84931433 TATAAAAATCGTAAAAAATTATAAAA-TA
1 TATAAAAATCGTAAAAAA-TATAAAATTT
**
84931461 TATAGAAATAT-AAAAAAAATATAAAATTT
1 TATA-AAA-ATCGTAAAAAATATAAAATTT
84931490 TATAAA
1 TATAAA
84931496 GTCATAAGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 32 0.58
29 21 0.38
30 2 0.04
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (28 bp):
TATAAAAATCGTAAAAAATATAAAATTT
Found at i:84931438 original size:19 final size:19
Alignment explanation
Indices: 84931416--84931495 Score: 74
Period size: 19 Copynumber: 4.2 Consensus size: 19
84931406 ATAAAAATCG
84931416 TAAAAAATATAAAATTTTA
1 TAAAAAATATAAAATTTTA
* **
84931435 T-AAAAATCGTAAAAAATTA
1 TAAAAAAT-ATAAAATTTTA
* *
84931454 TAAAATATATAGAAA-TATA
1 TAAAAAATATA-AAATTTTA
*
84931473 AAAAAAATATAAAATTTTA
1 TAAAAAATATAAAATTTTA
84931492 TAAA
1 TAAA
84931496 GTCATAAGAA
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
18 9 0.20
19 29 0.63
20 8 0.17
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAAAATATAAAATTTTA
Found at i:84931440 original size:36 final size:36
Alignment explanation
Indices: 84931383--84931486 Score: 93
Period size: 38 Copynumber: 2.8 Consensus size: 36
84931373 TAAAAAATTT
* *
84931383 AAAATATTAAAA-ATTAGAAAAATATAAAAATCGTAA
1 AAAATA-TAAAATATTAAAAAAATATAAAAATCATAA
* * * *
84931419 AAAATATAAAATTTTATAAAAATCGTAAAAAATTATAA
1 AAAATATAAAATATTAAAAAAAT-AT-AAAAATCATAA
* *
84931457 AATATATAGAAATATAAAAAAAATATAAAA
1 AAAATATA-AAATATTAAAAAAATATAAAA
84931487 TTTTATAAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
35 5 0.09
36 15 0.28
37 5 0.09
38 17 0.31
39 12 0.22
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (36 bp):
AAAATATAAAATATTAAAAAAATATAAAAATCATAA
Found at i:84931469 original size:10 final size:9
Alignment explanation
Indices: 84931372--84931487 Score: 53
Period size: 9 Copynumber: 12.8 Consensus size: 9
84931362 TTAAATTTTA
*
84931372 ATAAAAAAT
1 ATAAAATAT
*
84931381 TTAAAATAT
1 ATAAAATAT
84931390 -TAAAA-AT
1 ATAAAATAT
*
84931397 -TAGAAAAAT
1 ATA-AAATAT
84931406 ATAAAA-AT
1 ATAAAATAT
* *
84931414 CGTAAAAAAT
1 -ATAAAATAT
*
84931424 ATAAAATTTT
1 ATAAAA-TAT
84931434 ATAAAA-AT
1 ATAAAATAT
* *
84931442 CGTAAAAAATT
1 -ATAAAATA-T
84931453 ATAAAATAT
1 ATAAAATAT
84931462 ATAGAAATAT
1 ATA-AAATAT
* *
84931472 AAAAAAAAT
1 ATAAAATAT
84931481 ATAAAAT
1 ATAAAAT
84931488 TTTATAAAGT
Statistics
Matches: 83, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
7 4 0.05
8 11 0.13
9 41 0.49
10 26 0.31
11 1 0.01
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (9 bp):
ATAAAATAT
Found at i:84931507 original size:28 final size:27
Alignment explanation
Indices: 84931409--84931508 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 27
84931399 GAAAAATATA
*
84931409 AAAATCGTAAAAAATATAAAATTTTAT
1 AAAATCATAAAAAATATAAAATTTTAT
* *
84931436 AAAAATCGTAAAAAATTATAAAA-TATAT
1 -AAAATCATAAAAAA-TATAAAATTTTAT
84931464 AGAAAT-ATAAAAAAAATATAAAATTTTAT
1 A-AAATCAT--AAAAAATATAAAATTTTAT
*
84931493 AAAGTCATAAGAAAAT
1 AAAATCATAA-AAAAT
84931509 TCTACAAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
27 4 0.07
28 37 0.61
29 20 0.33
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (27 bp):
AAAATCATAAAAAATATAAAATTTTAT
Found at i:84931508 original size:57 final size:59
Alignment explanation
Indices: 84931417--84931533 Score: 159
Period size: 57 Copynumber: 2.0 Consensus size: 59
84931407 TAAAAATCGT
* * *
84931417 AAAAAATATAAAATTTTATAAAAATCGTAAAAAA-T-TATAAAATATATAGAAATATAA
1 AAAAAATATAAAATTTTATAAAAATCATAAAAAATTCTACAAAATATAAAGAAATATAA
* *
84931474 AAAAAATATAAAATTTTAT-AAAGTCATAAGAAAATTCTACAAAATTTAAAGAAATATAA
1 AAAAAATATAAAATTTTATAAAAATCATAA-AAAATTCTACAAAATATAAAGAAATATAA
84931533 A
1 A
84931534 TTTCGTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
56 8 0.15
57 23 0.44
58 1 0.02
59 20 0.38
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (59 bp):
AAAAAATATAAAATTTTATAAAAATCATAAAAAATTCTACAAAATATAAAGAAATATAA
Found at i:84931780 original size:17 final size:16
Alignment explanation
Indices: 84931753--84931793 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
84931743 TTTATAAAAG
*
84931753 AAAATTCTAATTTTTA
1 AAAATTTTAATTTTTA
*
84931769 ATAAATTTTAATTTTTT
1 A-AAATTTTAATTTTTA
84931786 AAAATTTT
1 AAAATTTT
84931794 TATTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
AAAATTTTAATTTTTA
Found at i:84931800 original size:27 final size:30
Alignment explanation
Indices: 84931761--84931823 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 30
84931751 AGAAAATTCT
84931761 AATTTTTAAT-AAATTT-TAATTTTT-TAA
1 AATTTTTAATAAAATTTATAATTTTTCTAA
*
84931788 AATTTTTATTAAAATTTAATAATTTTTCTAA
1 AATTTTTAATAAAATTT-ATAATTTTTCTAA
84931819 AATTT
1 AATTT
84931824 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 9 0.29
28 6 0.19
30 8 0.26
31 8 0.26
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (30 bp):
AATTTTTAATAAAATTTATAATTTTTCTAA
Found at i:84931811 original size:20 final size:18
Alignment explanation
Indices: 84931783--84931824 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
84931773 ATTTTAATTT
*
84931783 TTTAAAATTTTTATTAAAA
1 TTTAAAATTTTT-CTAAAA
84931802 TTTAATAATTTTTCTAAAA
1 TTTAA-AATTTTTCTAAAA
84931821 TTTA
1 TTTA
84931825 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTAAAATTTTTCTAAAA
Found at i:84950671 original size:24 final size:25
Alignment explanation
Indices: 84950624--84950677 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
84950614 TGACTCTTTT
* * *
84950624 TAAAAAATTAATGACTAAATTTAAC
1 TAAAAAAATAAAGACCAAATTTAAC
*
84950649 TAAAAAAATAAAGACCAAA-TTAAT
1 TAAAAAAATAAAGACCAAATTTAAC
84950673 TAAAA
1 TAAAA
84950678 TATAAATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (25 bp):
TAAAAAAATAAAGACCAAATTTAAC
Found at i:84951068 original size:16 final size:16
Alignment explanation
Indices: 84951029--84951068 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
84951019 GATGTGACTG
*
84951029 ATTAGACTAACAGTAT
1 ATTAGACTAACAGTAC
* *
84951045 ATTGGACTAACTGTAC
1 ATTAGACTAACAGTAC
84951061 ATTAGACT
1 ATTAGACT
84951069 GGACCCAGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (16 bp):
ATTAGACTAACAGTAC
Found at i:84952536 original size:35 final size:35
Alignment explanation
Indices: 84952497--84952566 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
84952487 TAAAAGAAAA
84952497 GAAAACTATTTCTAGTTTTTGTGTTTGATTCGTTT
1 GAAAACTATTTCTAGTTTTTGTGTTTGATTCGTTT
*
84952532 GAAAACTATTTCTAGTTTTTTTGTTTGATTCGTTT
1 GAAAACTATTTCTAGTTTTTGTGTTTGATTCGTTT
84952567 TGTTTGGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.56
Consensus pattern (35 bp):
GAAAACTATTTCTAGTTTTTGTGTTTGATTCGTTT
Found at i:84954215 original size:25 final size:25
Alignment explanation
Indices: 84954186--84954235 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
84954176 GATAAAAAAA
84954186 ATAAAGGTCATGCATATAAATGAGT
1 ATAAAGGTCATGCATATAAATGAGT
84954211 ATAAAGGTCATGCATATAAATGAGT
1 ATAAAGGTCATGCATATAAATGAGT
84954236 TGACAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (25 bp):
ATAAAGGTCATGCATATAAATGAGT
Found at i:84955477 original size:5 final size:5
Alignment explanation
Indices: 84955467--84955498 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
84955457 TTGTGTGTTC
84955467 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
84955499 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:84955486 original size:14 final size:14
Alignment explanation
Indices: 84955467--84955497 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
84955457 TTGTGTGTTC
84955467 TTTATTTTATTTTA
1 TTTATTTTATTTTA
84955481 TTTATTTTATTTTA
1 TTTATTTTATTTTA
84955495 TTT
1 TTT
84955498 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:84962131 original size:15 final size:15
Alignment explanation
Indices: 84962111--84962140 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
84962101 TTTAATCTTT
*
84962111 TATAAATTATAAAAA
1 TATAAACTATAAAAA
84962126 TATAAACTATAAAAA
1 TATAAACTATAAAAA
84962141 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:84964715 original size:87 final size:87
Alignment explanation
Indices: 84964619--84964797 Score: 313
Period size: 87 Copynumber: 2.1 Consensus size: 87
84964609 ATTAATTCTG
* * *
84964619 CTGCTGGCTCTTCCTTGGGTGCAAATCATAACTTGGCTAATTATGGTGTCATGAACAATCACAAT
1 CTGCTGGCTCTTCCTTGGGTGCAAATCATAACTTGGCTAAGTATAGTGTCATGAACAATCACAAA
84964684 AACCTTTGCAACAGAGACTTTA
66 AACCTTTGCAACAGAGACTTTA
* *
84964706 CTGCTGGCTCTTCCTTGGGTGCAAATCATAACTTGGTTGAGTATAGTGTCATGAACAATCACAAA
1 CTGCTGGCTCTTCCTTGGGTGCAAATCATAACTTGGCTAAGTATAGTGTCATGAACAATCACAAA
84964771 AACCTTTGCAACAGAGACTTTA
66 AACCTTTGCAACAGAGACTTTA
84964793 CTGCT
1 CTGCT
84964798 TGTAATAAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (87 bp):
CTGCTGGCTCTTCCTTGGGTGCAAATCATAACTTGGCTAAGTATAGTGTCATGAACAATCACAAA
AACCTTTGCAACAGAGACTTTA
Found at i:84966442 original size:27 final size:27
Alignment explanation
Indices: 84966393--84966447 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
84966383 AAAAAGTATA
84966393 TAAAAATTGTAGAAAAAGTTTAAATAT
1 TAAAAATTGTAGAAAAAGTTTAAATAT
* *
84966420 TAAAAATTGTA-AATAATTATTAAATAT
1 TAAAAATTGTAGAAAAAGT-TTAAATAT
84966447 T
1 T
84966448 GTTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (27 bp):
TAAAAATTGTAGAAAAAGTTTAAATAT
Found at i:84966497 original size:23 final size:24
Alignment explanation
Indices: 84966454--84966501 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
84966444 TATTGTTAAA
*
84966454 AATATTTTTAAATTGTAAAAAATT
1 AATATTTTAAAATTGTAAAAAATT
84966478 AATA-TTTAAAATT-TATAAAAATT
1 AATATTTTAAAATTGTA-AAAAATT
84966501 A
1 A
84966502 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 2 0.09
23 16 0.73
24 4 0.18
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATTTTAAAATTGTAAAAAATT
Found at i:84967409 original size:10 final size:10
Alignment explanation
Indices: 84967396--84967470 Score: 54
Period size: 9 Copynumber: 8.0 Consensus size: 10
84967386 AAATATAAAA
84967396 ATATATTTTT
1 ATATATTTTT
84967406 ATAT-TTTTT
1 ATATATTTTT
84967415 ATA-ATTTTT
1 ATATATTTTT
*
84967424 A-ATA-ATTT
1 ATATATTTTT
* *
84967432 -TATCTTTTA
1 ATATATTTTT
*
84967441 AAATAGTTTTT
1 ATATA-TTTTT
*
84967452 ATATTTTTTT
1 ATATATTTTT
84967462 ATA-ATTTTT
1 ATATATTTTT
84967471 TAATAATTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
8 6 0.12
9 22 0.45
10 14 0.29
11 7 0.14
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (10 bp):
ATATATTTTT
Found at i:84967445 original size:47 final size:46
Alignment explanation
Indices: 84967401--84967523 Score: 205
Period size: 48 Copynumber: 2.7 Consensus size: 46
84967391 TAAAAATATA
84967401 TTTTTATATTTTTTATAATTTTTAATAATTTTATCTTTTAAAATAG
1 TTTTTATATTTTTTATAATTTTTAATAATTTTATCTTTTAAAATAG
84967447 TTTTTATATTTTTTTATAATTTTTTAATAATTTTATCTTTTAAAATAG
1 TTTTTATA-TTTTTTATAA-TTTTTAATAATTTTATCTTTTAAAATAG
*
84967495 TTTTTATATTTTTT-CAATTTTTAA-AATTT
1 TTTTTATATTTTTTATAATTTTTAATAATTT
84967524 AAAAAATTAA
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
44 5 0.07
45 7 0.09
46 10 0.14
47 16 0.22
48 36 0.49
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (46 bp):
TTTTTATATTTTTTATAATTTTTAATAATTTTATCTTTTAAAATAG
Found at i:84967461 original size:11 final size:11
Alignment explanation
Indices: 84967447--84967480 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
84967437 TTTAAAATAG
84967447 TTTTTAT-ATT
1 TTTTTATAATT
84967457 TTTTTATAATT
1 TTTTTATAATT
*
84967468 TTTTAATAATT
1 TTTTTATAATT
84967479 TT
1 TT
84967481 ATCTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:84967471 original size:10 final size:10
Alignment explanation
Indices: 84967401--84967480 Score: 55
Period size: 10 Copynumber: 8.3 Consensus size: 10
84967391 TAAAAATATA
84967401 TTTTTAT-AT
1 TTTTTATAAT
84967410 TTTTTATAAT
1 TTTTTATAAT
*
84967420 TTTTAATAA-
1 TTTTTATAAT
84967429 --TTT-T-AT
1 TTTTTATAAT
* *
84967435 CTTTTAAAAT
1 TTTTTATAAT
*
84967445 AGTTTTTATATT
1 --TTTTTATAAT
84967457 TTTTTATAAT
1 TTTTTATAAT
84967467 TTTTTAATAAT
1 TTTTT-ATAAT
84967478 TTT
1 TTT
84967481 ATCTTTTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
5 1 0.02
6 1 0.02
7 2 0.04
8 3 0.05
9 7 0.13
10 26 0.47
11 8 0.15
12 7 0.13
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:84979566 original size:44 final size:44
Alignment explanation
Indices: 84979455--84980175 Score: 524
Period size: 44 Copynumber: 16.2 Consensus size: 44
84979445 CATCATGGCG
* *
84979455 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
** * * * *
84979500 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
84979544 AACCTTATCTCCATGAAGTTGCAGTGGAGTAGGTTGAAGTTACA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
84979588 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * *
84979633 AATTTTATCTCTC-TGAAGTTGCAGTAGAGTAGATTAAAGCTATA
1 AATCTTATCTC-CATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* ** * *
84979677 AACCTTATCTCTCA-GAAGTTGCAGTGGAAAAGGTTGAAGTTACA
1 AATCTTATCTC-CATGAAGTTGCAGTGGAGCAGATTGAAGATACA
** * * * * *
84979721 GGTCTTACCTCCATAAAGATGCAGTGGAGTAGATTGAAGA-ACGTG
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATAC--A
* * * *
84979766 AATCTTATCTTCC-TGAAGCTGCAGTGGAGAAAATTGAAGATAGCG
1 AATCTTATC-TCCATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * *
84979811 AATCTTATTTCCTTGAAGTTGCAGTGGAACAAATTAAATATACA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * **
84979855 AGTCTAATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCACA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * ** *
84979899 AATCCTATAC-CCCTGAAGTTGCAGTGGAACAGATTGAAGCCACT
1 AATCTTAT-CTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * * *
84979943 GATTTTATCTTGC-TAAAATTGCAGTGGAGTAGATT-AA-ATCCACT
1 AATCTTATC-TCCATGAAGTTGCAGTGGAGCAGATTGAAGAT--ACA
* * * *
84979987 AATCTTATCTCCCTGAAATTGCGGTGGAGAAGATTGAAGATAGCA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
84980032 AATCGTATCTCTC-TGTAGTTGCAGTAGAGTAGATTGAAGATATCA
1 AATCTTATCTC-CATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * *
84980077 AATCTTATCTCCCTGATGTTGTAGTAGAGCAGATTGAAGTTACA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
84980121 AATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGATAGCA
1 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
84980166 AATCTTATCT
1 AATCTTATCT
84980176 GTAACAGCTT
Statistics
Matches: 538, Mismatches: 116, Indels: 44
0.77 0.17 0.06
Matches are distributed among these distances:
43 9 0.02
44 299 0.56
45 221 0.41
46 8 0.01
47 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:84979695 original size:133 final size:132
Alignment explanation
Indices: 84979455--84980175 Score: 639
Period size: 133 Copynumber: 5.4 Consensus size: 132
84979445 CATCATGGCG
* * *
84979455 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCTTTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
* * * *
84979520 GCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCATGAAGTTGCAGTGGAGTAGGTTGAAGTT
66 GCAGTAGAGCAGATTGAAGCTATAAATCTTATCTCCA-GAAGTTGCAGTGGAGCAGATTGAAGTT
84979585 ACA
130 ACA
* * *
84979588 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAAATTTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
* * * ** *
84979653 GCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCTCAGAAGTTGCAGTGGAAAAGGTTGAAGTT
66 GCAGTAGAGCAGATTGAAGCTATAAATCTTATCTC-CAGAAGTTGCAGTGGAGCAGATTGAAGTT
84979718 ACA
130 ACA
** * * * * * **
84979721 GGTCTTACCTCCATAAAGATGCAGTGGAGTAGATTGAAGA-ACGTGAATCTTATCT-TCCTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-GCAAATCTTATCTCT-CTGAAG
* * * * * ** * * * *
84979784 CTGCAGTGGAGAAAATTGAAGATAGCGAATCTTATTTCCTTGAAGTTGCAGTGGAACAAATT-AA
64 TTGCAGTAGAGCAGATTGAAGCTA-TAAATCTTATCTCC-AGAAGTTGCAGTGGAGCAGATTGAA
*
84979848 ATATACA
127 GT-TACA
* * * * ** * *
84979855 AGTCTAATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCA-CAAATCCTATAC-CCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTAT-CTCTCTGAAGT
* * * * * * * *
84979918 TGCAGTGGAACAGATTGAAGCCACT-GATTTTATCTTGCTA-AAATTGCAGTGGAGTAGATT-AA
65 TGCAGTAGAGCAGATTGAAGCTA-TAAATCTTATC-T-CCAGAAGTTGCAGTGGAGCAGATTGAA
* * *
84979980 ATCCACT
127 GT-TACA
* * * * *
84979987 AATCTTATCTCCCTGAAATTGCGGTGGAGAAGATTGAAGATAGCAAATCGTATCTCTCTGTAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
* * * * * *
84980052 GCAGTAGAGTAGATTGAAGATATCAAATCTTATCTCCCTGATGTTGTAGTAGAGCAGATTGAAGT
66 GCAGTAGAGCAGATTGAAGCTAT-AAATCTTATCT-CCAGAAGTTGCAGTGGAGCAGATTGAAGT
84980117 TACA
129 TACA
* *
84980121 AATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGATAGCAAATCTTATCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCT
84980176 GTAACAGCTT
Statistics
Matches: 469, Mismatches: 102, Indels: 33
0.78 0.17 0.05
Matches are distributed among these distances:
132 66 0.14
133 259 0.55
134 140 0.30
135 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (132 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATTGAAGCTATAAATCTTATCTCCAGAAGTTGCAGTGGAGCAGATTGAAGTTA
CA
Found at i:84980064 original size:311 final size:310
Alignment explanation
Indices: 84979454--84980141 Score: 723
Period size: 311 Copynumber: 2.2 Consensus size: 310
84979444 ACATCATGGC
* * *
84979454 GAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCTTTGAAGT
1 GAATCTTATCTCCTTGAAGCTGCAGTGGAGAAAATTGAAGATAGCAAATCTTATCTCCTTGAAGT
* * * * * *
84979519 TGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCATGAAGTTGCAGTGGAGTAGGTTGAAGT
66 TGCAGTAGAACAAATTAAA-CTATAAACCTAATCTCCATGAAGTTACAGTGGAGTAGATTGAAGC
* * * *
84979584 TACAAATCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAAATTTTATCTCTCTGA
130 CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGACAGAAAATTTTATCTCTCTAA
* * * * *
84979649 AGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCTCAGAAGTTGCAGTGGAAAAGGTTGA
195 AATTGCAGTAGAGTAGATTAAAGCCATAAACCTTATCTCCCAGAAATTGCAGTGGAAAAGATTGA
* ** * *
84979714 AGTTACAGGTCTTACCTCCATAAAGATGCAGTGGAGTAGATTGAAGAACGT
260 AGATACAAATCGTACCTCCATAAAGATGCAGTAGAGTAGATTGAAGAACGT
* *
84979765 GAATCTTATCTTCC-TGAAGCTGCAGTGGAGAAAATTGAAGATAGCGAATCTTATTTCCTTGAAG
1 GAATCTTATC-TCCTTGAAGCTGCAGTGGAGAAAATTGAAGATAGCAAATCTTATCTCCTTGAAG
* * *
84979829 TTGCAGTGGAACAAATTAAA-TATACAAGTCTAATCTCCCTGAAGTTACAGTGGAGTAGATTGAA
65 TTGCAGTAGAACAAATTAAACTATA-AA-CCTAATCTCCATGAAGTTACAGTGGAGTAGATTGAA
* ***
84979893 GCCACAAATC-CTATAC-CCCTGAAGTTGCAGTGGAACAGATTGAAGCCA-CTGATTTTATCT-T
128 GCCACAAATCTC-AT-CTCCCTGAAGTTGCAGTGGAACAGATTGAAGACAGAAAATTTTATCTCT
* * * * * *
84979954 GCTAAAATTGCAGTGGAGTAGATTAAATCCACT-AATCTTATCTCCCTGAAATTGCGGTGGAGAA
191 -CTAAAATTGCAGTAGAGTAGATTAAAGCCA-TAAACCTTATCTCCCAGAAATTGCAGTGGAAAA
* ** *
84980018 GATTGAAGATAGCAAATCGTATCTCTC-TGTAGTTGCAGTAGAGTAGATTGAAGATA--T
254 GATTGAAGATA-CAAATCGTACCTC-CATAAAGATGCAGTAGAGTAGATTGAAGA-ACGT
* * * * * * * * * *
84980075 CAAATCTTATCTCCCTGATGTTGTAGTAGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAG
1 -GAATCTTATCTCCTTGAAGCTGCAGTGGAGAAAATTGAAGATAGCAAATCTTATCTCCTTGAAG
84980139 TTG
65 TTG
84980142 TAGTGAAGCA
Statistics
Matches: 312, Mismatches: 53, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
309 5 0.02
310 95 0.30
311 206 0.66
312 6 0.02
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (310 bp):
GAATCTTATCTCCTTGAAGCTGCAGTGGAGAAAATTGAAGATAGCAAATCTTATCTCCTTGAAGT
TGCAGTAGAACAAATTAAACTATAAACCTAATCTCCATGAAGTTACAGTGGAGTAGATTGAAGCC
ACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGACAGAAAATTTTATCTCTCTAAA
ATTGCAGTAGAGTAGATTAAAGCCATAAACCTTATCTCCCAGAAATTGCAGTGGAAAAGATTGAA
GATACAAATCGTACCTCCATAAAGATGCAGTAGAGTAGATTGAAGAACGT
Found at i:84981472 original size:46 final size:45
Alignment explanation
Indices: 84981380--84981500 Score: 129
Period size: 46 Copynumber: 2.6 Consensus size: 45
84981370 GGTGGTATGT
* *
84981380 GAGCCAGTGCAAGACATGTCTGGGACATGCATCGGCCACATCACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACATCACGA
* *
84981426 GTGCTAGTGTAAGACATGTCTGGGACATGCATC-G-ACATTGAGACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACA-T--CACGA
* * *
84981472 GAGCTAGTATAAGCCATGTTTGGGACATG
1 GAGCTAGTGTAAGACATGTCTGGGACATG
84981501 AATCAGCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 3 0.05
44 1 0.02
45 1 0.02
46 59 0.92
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATCACGA
Found at i:84987903 original size:10 final size:10
Alignment explanation
Indices: 84987888--84987913 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
84987878 GAACACGAGC
84987888 AGATCATGAG
1 AGATCATGAG
84987898 AGATCATGAG
1 AGATCATGAG
84987908 AGATCA
1 AGATCA
84987914 ATACTCGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.27, T:0.19
Consensus pattern (10 bp):
AGATCATGAG
Found at i:84989386 original size:49 final size:47
Alignment explanation
Indices: 84989185--84989441 Score: 145
Period size: 48 Copynumber: 5.5 Consensus size: 47
84989175 CGAGCCAGTT
* * * * *
84989185 TAAGACATGTCTGGGACAT-GCATTGGCCACAT-CATG-AGTGGCAGTG
1 TAAGACCTGTCTGGGACATGGCATCGGCCTCATATATGAAGT--TAGTG
* *
84989231 TAAGACATGTCTGGGACAT-GCATCGGCCTCGGGATATAT-AAGCTAGTG
1 TAAGACCTGTCTGGGACATGGCATCGGCCTC---ATATATGAAGTTAGTG
* ** ** * * *
84989279 TAAGACCTGTCTGGGACATGGCGTTAG-CTTGT-TGTG-TGTCAGTG
1 TAAGACCTGTCTGGGACATGGCATCGGCCTCATATATGAAGTTAGTG
* *
84989323 TAATACCTTTCTGGGACATGGCATCGGCCTCAATATATGAAAGTTAGTG
1 TAAGACCTGTCTGGGACATGGCATCGGCCTC-ATATATG-AAGTTAGTG
* ** * * * **
84989372 TAAGACCTGTCTGGGACACGGCATCAACTTCA-ATGTGCTAGCCAGTG
1 TAAGACCTGTCTGGGACATGGCATCGGCCTCATATATG-AAGTTAGTG
84989419 TAAGACCATGTCTGGGACATGGC
1 TAAGACC-TGTCTGGGACATGGC
84989442 GTCAGCATTT
Statistics
Matches: 161, Mismatches: 37, Indels: 24
0.73 0.17 0.11
Matches are distributed among these distances:
44 29 0.18
45 3 0.02
46 29 0.18
47 20 0.12
48 39 0.24
49 37 0.23
50 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (47 bp):
TAAGACCTGTCTGGGACATGGCATCGGCCTCATATATGAAGTTAGTG
Found at i:84991205 original size:4 final size:4
Alignment explanation
Indices: 84991196--84991238 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
84991186 AATTGAGTCC
* *
84991196 TTTA TTTA TTTA TTTA TTTA TTTA CTTA TTTA TTAA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
84991239 CCATTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:84993008 original size:37 final size:37
Alignment explanation
Indices: 84992967--84993040 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
84992957 ATCATAATAA
84992967 TATTAAAAATAT-GCAAGAATTT-AAAAAATAATTAAAT
1 TATTAAAAATATAGCAA-AATTTGAAAAAA-AATTAAAT
* *
84993004 TATTAAAAATATAGTAAAATTTGTAAAAAAATTAAAT
1 TATTAAAAATATAGCAAAATTTGAAAAAAAATTAAAT
84993041 ATTTTAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 25 0.76
38 8 0.24
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (37 bp):
TATTAAAAATATAGCAAAATTTGAAAAAAAATTAAAT
Found at i:84993059 original size:20 final size:18
Alignment explanation
Indices: 84992984--84993177 Score: 119
Period size: 20 Copynumber: 10.1 Consensus size: 18
84992974 AATATGCAAG
* *
84992984 AATTTAAAAAATAATT-A
1 AATTTTAAAAATTATTAA
*
84993001 AATTATTAAAAATATAGTAA
1 AATT-TTAAAAAT-TATTAA
*
84993021 AATTTGTAAAAA-AATTAA
1 AATTT-TAAAAATTATTAA
84993039 ATATTTTAAATAATTATTAA
1 A-ATTTTAAA-AATTATTAA
84993059 ATATTGTTTAAAATATT-TTAA
1 A-A-T-TTTAAAA-ATTATTAA
**
84993080 AATCGTAGAAAA-TATTAA
1 AATTTTA-AAAATTATTAA
84993098 AATTTATAAAAAATTATTAA
1 AATTT-T-AAAAATTATTAA
84993118 AATTATTAAAAATTATTAAA
1 AATT-TTAAAAATTATT-AA
** *
84993138 AATTGCAAGTAATTATTAA
1 AATTTTAA-AAATTATTAA
84993157 AATTTGT-AAAATTATTTAA
1 AATTT-TAAAAATTA-TTAA
84993176 AA
1 AA
84993178 ATTGTGAACC
Statistics
Matches: 141, Mismatches: 16, Indels: 38
0.72 0.08 0.19
Matches are distributed among these distances:
17 5 0.04
18 31 0.22
19 43 0.30
20 45 0.32
21 8 0.06
22 9 0.06
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (18 bp):
AATTTTAAAAATTATTAA
Found at i:84993082 original size:59 final size:57
Alignment explanation
Indices: 84992988--84993138 Score: 157
Period size: 59 Copynumber: 2.6 Consensus size: 57
84992978 TGCAAGAATT
* ** *
84992988 TAAAAAATAATT-AAATTATTAAAAATATAGTAAAATTTGTA-AAAAAATTAAATATTT-
1 TAAAAAATTATTAAAATTATT-AAAATATTTTAAAA-TCGTAGAAAAAATTAAA-ATTTA
* * *
84993045 TAAATAATTATTAAATATTGTTTAAAATATTTTAAAATCGTAGAAAATATTAAAATTTA
1 TAAAAAATTATTAAA-ATT-ATTAAAATATTTTAAAATCGTAGAAAAAATTAAAATTTA
84993104 TAAAAAATTATTAAAATTATTAAAA-ATTATTAAAA
1 TAAAAAATTATTAAAATTATTAAAATATT-TTAAAA
84993139 ATTGCAAGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
56 3 0.04
57 22 0.28
58 13 0.16
59 39 0.49
60 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (57 bp):
TAAAAAATTATTAAAATTATTAAAATATTTTAAAATCGTAGAAAAAATTAAAATTTA
Found at i:84993109 original size:10 final size:10
Alignment explanation
Indices: 84993088--84993141 Score: 76
Period size: 10 Copynumber: 5.6 Consensus size: 10
84993078 AAAATCGTAG
84993088 AAAA-TATTA
1 AAAATTATTA
* *
84993097 AAATTTATAA
1 AAAATTATTA
84993107 AAAATTATT-
1 AAAATTATTA
84993116 AAAATTATTA
1 AAAATTATTA
84993126 AAAATTATTA
1 AAAATTATTA
84993136 AAAATT
1 AAAATT
84993142 GCAAGTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
9 12 0.31
10 27 0.69
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTATTA
Found at i:84993123 original size:19 final size:19
Alignment explanation
Indices: 84992984--84993138 Score: 97
Period size: 18 Copynumber: 8.1 Consensus size: 19
84992974 AATATGCAAG
*
84992984 AATT-TAAAAAATAATT-A
1 AATTATAAAAAATTATTAA
* *
84993001 AATTATTAAAAATATAGTAA
1 AATTATAAAAAAT-TATTAA
*
84993021 AATTTGTAAAAAA--ATTAA
1 AA-TTATAAAAAATTATTAA
* *
84993039 ATATTTTAAATAATTATTAA
1 A-ATTATAAAAAATTATTAA
* *
84993059 ATATTGTTTAAAATATT-TTAA
1 A-A-T-TATAAAAAATTATTAA
** *
84993080 AATCGTAGAAAA-TATTAA
1 AATTATAAAAAATTATTAA
84993098 AATTTATAAAAAATTATTAA
1 AA-TTATAAAAAATTATTAA
*
84993118 AATTATTAAAAATTATTAA
1 AATTATAAAAAATTATTAA
84993137 AA
1 AA
84993139 ATTGCAAGTA
Statistics
Matches: 108, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
17 5 0.05
18 31 0.29
19 29 0.27
20 20 0.19
21 14 0.13
22 9 0.08
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (19 bp):
AATTATAAAAAATTATTAA
Found at i:84993135 original size:39 final size:38
Alignment explanation
Indices: 84992988--84993182 Score: 150
Period size: 39 Copynumber: 5.0 Consensus size: 38
84992978 TGCAAGAATT
* *
84992988 TAAAAAATAATT-AAATTATTAAAAATATAGTAAAATTTG
1 TAAAAAATTATTAAAATT-TTAAAAAT-TATTAAAATTTG
*
84993027 TAAAAAA--ATTAAATATTTTAAATAATTATTAAATATTGTT
1 TAAAAAATTATTAAA-ATTTTAAA-AATTATTAAA-ATT-TG
* ** *
84993067 TAAAATATT-TTAAAATCGTAGAAAA-TATTAAAATTTA
1 TAAAAAATTATTAAAATTTTA-AAAATTATTAAAATTTG
*
84993104 TAAAAAATTATTAAAATTATTAAAAATTATTAAAAATTG
1 TAAAAAATTATTAAAATT-TTAAAAATTATTAAAATTTG
* ** *
84993143 CAAGTAATTATTAAAATTTGT-AAAATTATTTAAAAATTG
1 TAAAAAATTATTAAAATTT-TAAAAATTA-TTAAAATTTG
84993182 T
1 T
84993183 GAACCGGTAG
Statistics
Matches: 128, Mismatches: 15, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
37 12 0.09
38 35 0.27
39 61 0.48
40 13 0.10
41 7 0.05
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.40
Consensus pattern (38 bp):
TAAAAAATTATTAAAATTTTAAAAATTATTAAAATTTG
Found at i:84993155 original size:59 final size:56
Alignment explanation
Indices: 84992986--84993167 Score: 156
Period size: 59 Copynumber: 3.1 Consensus size: 56
84992976 TATGCAAGAA
* * * *
84992986 TTTAAAAAATAATT-AAATTATTAAAAATATAGTAAAATTTGTAA-AAAAATTAAATAT
1 TTTAAAAAATTATTAAAATTATTAAAAAT-TATTAAAAATTG-AAGAAATATTAAA-AT
* * * *
84993043 TTTAAATAATTATTAAATATTGTTTAAAATATT-TT-AAAATCGTAGAAAATATTAAAAT
1 TTTAAAAAATTATTAAA-ATT-ATTAAAA-ATTATTAAAAATTGAAG-AAATATTAAAAT
*
84993101 TTATAAAAAATTATTAAAATTATTAAAAATTATTAAAAATTGCAAGTAATTATTAAAAT
1 TT-TAAAAAATTATTAAAATTATTAAAAATTATTAAAAATTG-AAG-AAATATTAAAAT
84993160 TTGTAAAA
1 TT-TAAAA
84993168 TTATTTAAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
56 3 0.03
57 21 0.21
58 20 0.20
59 47 0.47
60 7 0.07
61 2 0.02
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (56 bp):
TTTAAAAAATTATTAAAATTATTAAAAATTATTAAAAATTGAAGAAATATTAAAAT
Found at i:84993421 original size:8 final size:9
Alignment explanation
Indices: 84993393--84993522 Score: 75
Period size: 9 Copynumber: 13.6 Consensus size: 9
84993383 TTGTTAGTTA
*
84993393 TTTACAATT
1 TTTAAAATT
84993402 TTTAAAATT
1 TTTAAAATT
84993411 TTTAAAATT
1 TTTAAAATT
84993420 TTTGAATAATGT
1 TTT-AA-AAT-T
**
84993432 TTTATTATT
1 TTTAAAATT
*
84993441 TTTATTAATTT
1 TTTA--AAATT
*
84993452 TTTACAA-T
1 TTTAAAATT
*
84993460 ATTAAAATT
1 TTTAAAATT
*
84993469 TTTAACAATA
1 TTTAA-AATT
84993479 TTTAATAATTT
1 TTTAA-AA-TT
84993490 TTTAAATATTT
1 TTTAAA-A-TT
*
84993501 TTTACAATT
1 TTTAAAATT
*
84993510 TTT-ATATT
1 TTTAAAATT
84993518 TTTAA
1 TTTAA
84993523 TCATTTAAAT
Statistics
Matches: 94, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
8 12 0.13
9 37 0.39
10 16 0.17
11 25 0.27
12 4 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (9 bp):
TTTAAAATT
Found at i:84993422 original size:10 final size:10
Alignment explanation
Indices: 84993400--84993512 Score: 58
Period size: 10 Copynumber: 11.4 Consensus size: 10
84993390 TTATTTACAA
84993400 TTTTTAAAA-
1 TTTTTAAAAT
84993409 TTTTTAAAAT
1 TTTTTAAAAT
*
84993419 TTTTGAATAAT
1 TTTTTAA-AAT
* **
84993430 GTTTTATTA-
1 TTTTTAAAAT
*
84993439 TTTTTATTAAT
1 TTTTTA-AAAT
*
84993450 TTTTTACAA-
1 TTTTTAAAAT
*
84993459 -TATTAAAA-
1 TTTTTAAAAT
84993467 TTTTTAACAA-
1 TTTTTAA-AAT
*
84993477 TATTTAATAAT
1 TTTTTAA-AAT
84993488 TTTTTAAATAT
1 TTTTTAAA-AT
*
84993499 TTTTTACAAT
1 TTTTTAAAAT
84993509 TTTT
1 TTTT
84993513 ATATTTTTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
8 6 0.07
9 19 0.23
10 28 0.35
11 28 0.35
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:84993492 original size:49 final size:48
Alignment explanation
Indices: 84993412--84993522 Score: 116
Period size: 49 Copynumber: 2.3 Consensus size: 48
84993402 TTTAAAATTT
* * * * *
84993412 TTAAAATTTTTGAATAATGTTTTATTATTTTT-ATTAATTTTTTACAATA
1 TTAAAATTTTT-AACAATATTTAATAATTTTTAAAT-ATTTTTTACAATA
*
84993461 TTAAAATTTTTAACAATATTTAATAATTTTTTAAATATTTTTTACAATT
1 TTAAAATTTTTAACAATATTTAATAA-TTTTTAAATATTTTTTACAATA
* *
84993510 TTTATATTTTTAA
1 TTAAAATTTTTAA
84993523 TCATTTAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
48 11 0.21
49 39 0.75
50 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (48 bp):
TTAAAATTTTTAACAATATTTAATAATTTTTAAATATTTTTTACAATA
Found at i:84993501 original size:31 final size:28
Alignment explanation
Indices: 84993461--84993520 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 28
84993451 TTTTACAATA
84993461 TTAAAATTTTTAACAATATTTAATAATTTT
1 TTAAAATTTTTAACAAT-TTTAAT-ATTTT
* *
84993491 TTAAATATTTTTTACAATTTTTATATTTT
1 TTAAA-ATTTTTAACAATTTTAATATTTT
84993520 T
1 T
84993521 AATCATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 10 0.37
31 11 0.41
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
TTAAAATTTTTAACAATTTTAATATTTT
Found at i:84993510 original size:59 final size:59
Alignment explanation
Indices: 84993393--84993512 Score: 147
Period size: 59 Copynumber: 2.0 Consensus size: 59
84993383 TTGTTAGTTA
* * * *
84993393 TTTACAATTTTTAAAATTTTTAAAATTTTTGAATAATGTTTTATTATTTTTATTAATTT
1 TTTACAATTATTAAAATTTTTAAAATATTTGAATAATGTTTTAATATTTTTATCAATTT
*
84993452 TTTACAA-TATTAAAATTTTTAACAATATTT-AATAATTTTTTAAATATTTTT-TACAATTT
1 TTTACAATTATTAAAATTTTTAA-AATATTTGAATAATGTTTT-AATATTTTTAT-CAATTT
84993511 TT
1 TT
84993513 ATATTTTTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
58 25 0.47
59 28 0.53
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (59 bp):
TTTACAATTATTAAAATTTTTAAAATATTTGAATAATGTTTTAATATTTTTATCAATTT
Found at i:84993540 original size:49 final size:49
Alignment explanation
Indices: 84993448--84993549 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 49
84993438 ATTTTTATTA
*
84993448 ATTTTTTACAATATTAAAATTTTTAACAATATTTAATAATTTTTTAAAT
1 ATTTTTTACAATATTAAAATTTTTAACAATATTAAATAATTTTTTAAAT
* * * * * *
84993497 ATTTTTTACAATTTTTATATTTTTAATC-AT-TTAAATATTTTTTTTACT
1 ATTTTTTACAATATTAAAATTTTTAA-CAATATTAAATAATTTTTTAAAT
84993545 ATTTT
1 ATTTT
84993550 AATAATTTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
48 19 0.42
49 25 0.56
50 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (49 bp):
ATTTTTTACAATATTAAAATTTTTAACAATATTAAATAATTTTTTAAAT
Found at i:84993582 original size:32 final size:28
Alignment explanation
Indices: 84993507--84993589 Score: 80
Period size: 32 Copynumber: 2.8 Consensus size: 28
84993497 ATTTTTTACA
*
84993507 ATTTTTATATTTTTAATCATTTAAATAT
1 ATTTTTATATTTTTAATAATTTAAATAT
*
84993535 -TTTTTTTACTATTTTAATAATTTTCTAAATAT
1 ATTTTTATA-T-TTTTAATAA--TT-TAAATAT
84993567 ATTTTTATGATTTTTAAT-ATTTA
1 ATTTTTAT-ATTTTTAATAATTTA
84993590 TTTATAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
27 7 0.16
28 3 0.07
29 10 0.22
31 3 0.07
32 14 0.31
33 7 0.16
34 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (28 bp):
ATTTTTATATTTTTAATAATTTAAATAT
Found at i:84993588 original size:9 final size:9
Alignment explanation
Indices: 84993399--84993588 Score: 62
Period size: 9 Copynumber: 19.4 Consensus size: 9
84993389 GTTATTTACA
*
84993399 ATTTTTAAA
1 ATTTTTAAT
*
84993408 ATTTTTAAA
1 ATTTTTAAT
84993417 ATTTTTGAAT
1 ATTTTT-AAT
*
84993427 AATGTTTTATT
1 -AT-TTTTAAT
*
84993438 ATTTTTATT
1 ATTTTTAAT
* *
84993447 AATTTTTTAC
1 -ATTTTTAAT
* * *
84993457 AATATTAAA
1 ATTTTTAAT
*
84993466 ATTTTTAACA
1 ATTTTTAA-T
*
84993476 ATATTTAAT
1 ATTTTTAAT
84993485 AATTTTTTAAAT
1 -A-TTTTT-AAT
84993497 ATTTTTTACA-
1 A-TTTTTA-AT
84993507 ATTTTT-AT
1 ATTTTTAAT
84993515 ATTTTTAAT
1 ATTTTTAAT
*
84993524 CA-TTTAAAT
1 -ATTTTTAAT
**
84993533 ATTTTTTTT
1 ATTTTTAAT
84993542 ACTATTTTAAT
1 A-T-TTTTAAT
84993553 AATTTTCTAAAT
1 -ATTTT-T-AAT
*
84993565 ATATTTTTAT
1 AT-TTTTAAT
84993575 GATTTTTAAT
1 -ATTTTTAAT
84993585 ATTT
1 ATTT
84993589 ATTTATAATT
Statistics
Matches: 139, Mismatches: 22, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
7 1 0.01
8 7 0.05
9 55 0.40
10 34 0.24
11 28 0.20
12 14 0.10
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:84993591 original size:22 final size:22
Alignment explanation
Indices: 84993544--84993597 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
84993534 TTTTTTTTAC
84993544 TATTTTAATAATTTTCTAAATA
1 TATTTTAATAATTTTCTAAATA
* * *
84993566 TATTTTTATGATTTT-TAATATT
1 TATTTTAATAATTTTCTAA-ATA
84993588 TATTTATAAT
1 TATTT-TAAT
84993598 TTATTGGTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 3 0.12
22 20 0.77
23 3 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTTAATAATTTTCTAAATA
Found at i:84995866 original size:15 final size:15
Alignment explanation
Indices: 84995846--84995882 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
84995836 GGCTTTCCAA
84995846 CTGATTGCACAACCT
1 CTGATTGCACAACCT
84995861 CTGATTGCACAACCT
1 CTGATTGCACAACCT
*
84995876 TTGATTG
1 CTGATTG
84995883 TAAAGACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.32
Consensus pattern (15 bp):
CTGATTGCACAACCT
Found at i:85008926 original size:39 final size:39
Alignment explanation
Indices: 85008837--85009013 Score: 257
Period size: 39 Copynumber: 4.5 Consensus size: 39
85008827 ACAAAGCATG
* * *
85008837 CGGGACTTTAAGCCCAGATATAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
85008877 CGGGACTTAGCCCGGATATAACACCAGTATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
85008916 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
85008955 CGGGACTTAGCCCGGATATAACACCAGCACAAACGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
85008994 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
85009014 TATCTCACAC
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 18 0.14
39 102 0.81
40 6 0.05
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:85009809 original size:22 final size:22
Alignment explanation
Indices: 85009784--85009825 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
85009774 CATATCTACC
*
85009784 TATTTATATCTTTACAAATATA
1 TATTTATATCTATACAAATATA
*
85009806 TATTTATATCTATATAAATA
1 TATTTATATCTATACAAATA
85009826 CCTATGTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTATATCTATACAAATATA
Found at i:85011648 original size:20 final size:22
Alignment explanation
Indices: 85011623--85011665 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
85011613 TTATTTTAAT
85011623 TATTAAA-TAT-AATTAAAATA
1 TATTAAATTATCAATTAAAATA
*
85011643 TATTAAATTATCAATTCAAATA
1 TATTAAATTATCAATTAAAATA
85011665 T
1 T
85011666 TATAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTAAATTATCAATTAAAATA
Found at i:85012088 original size:44 final size:44
Alignment explanation
Indices: 85012034--85012121 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
85012024 TTTTGAAAGG
* * *
85012034 AAATTTTAATTATTTTTAAATGTGTAATTATCGCAACTTCTATT
1 AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
* *
85012078 AAATTATAATTATTTTTAAATTTATAATTATCACAGCTTCTATT
1 AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
85012122 TTAAATGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (44 bp):
AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
Found at i:85013709 original size:29 final size:29
Alignment explanation
Indices: 85013677--85013808 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
85013667 ATAGTGAATC
85013677 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
85013706 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
85013736 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
85013765 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
85013794 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85013809 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:85013818 original size:59 final size:59
Alignment explanation
Indices: 85013677--85013808 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
85013667 ATAGTGAATC
85013677 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
85013736 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
85013794 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85013809 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:85015714 original size:44 final size:44
Alignment explanation
Indices: 85015660--85015747 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
85015650 TTTTGAAAGG
* *
85015660 AAATTTTAATTATTTTTAAATGTGTAATTATCACAACTTCTATT
1 AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
* *
85015704 AAATTATAATTATTTTTAAATTTATAATTATCACAGCTTCTATT
1 AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
85015748 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (44 bp):
AAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTATT
Found at i:85016970 original size:32 final size:32
Alignment explanation
Indices: 85016934--85016998 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
85016924 ATAATACAGA
*
85016934 AATAATTATTAATCAATTCAAAAATTTTCCCT
1 AATAATTATTAATCAATTCAAAAATTTGCCCT
85016966 AATAATTATTAATCAATTCAAAAATTTGCCCT
1 AATAATTATTAATCAATTCAAAAATTTGCCCT
85016998 A
1 A
85016999 CTGTCTCTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (32 bp):
AATAATTATTAATCAATTCAAAAATTTGCCCT
Found at i:85018130 original size:18 final size:18
Alignment explanation
Indices: 85018047--85018195 Score: 79
Period size: 18 Copynumber: 8.4 Consensus size: 18
85018037 ATCTTTATTG
* * *
85018047 TTCAGTATCAGTCAGTCA
1 TTCAGTAACAGTCAATTA
* * *
85018065 -TCAGTAATAATCAGTTA
1 TTCAGTAACAGTCAATTA
***
85018082 TTCAGTAACAGTTGTTTA
1 TTCAGTAACAGTCAATTA
** *
85018100 TTCAACATCAGTCAATTA
1 TTCAGTAACAGTCAATTA
** *
85018118 TTCAGTAGTAGTCAGTTA
1 TTCAGTAACAGTCAATTA
*
85018136 TTTAGTAACAGTC-ATTGA
1 TTCAGTAACAGTCAATT-A
* *
85018154 TTTAGTAACAGTCGATTA
1 TTCAGTAACAGTCAATTA
* * *
85018172 TTCAATAGCAGTTAATT-
1 TTCAGTAACAGTCAATTA
85018189 TTCAGTA
1 TTCAGTA
85018196 CCTTTATTTA
Statistics
Matches: 98, Mismatches: 30, Indels: 7
0.73 0.22 0.05
Matches are distributed among these distances:
17 21 0.21
18 74 0.76
19 3 0.03
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (18 bp):
TTCAGTAACAGTCAATTA
Found at i:85019040 original size:13 final size:12
Alignment explanation
Indices: 85019008--85019041 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
85018998 ATTTACTATA
85019008 TATATAATAACT
1 TATATAATAACT
85019020 TA-ATAATATACT
1 TATATAATA-ACT
85019032 TATATAATAA
1 TATATAATAA
85019042 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:85019310 original size:13 final size:13
Alignment explanation
Indices: 85019292--85019316 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85019282 TATAAATTTA
85019292 ATAATAATAAATC
1 ATAATAATAAATC
85019305 ATAATAATAAAT
1 ATAATAATAAAT
85019317 TAATCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAATAATAAATC
Done.