Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 283 of 378
Found at i:85314360 original size:14 final size:13
Alignment explanation
Indices: 85314340--85314376 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
85314330 AATATTTGAC
85314340 TTGTTCTTAATTA
1 TTGTTCTTAATTA
85314353 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
85314367 TTGTT-TTAAT
1 TTGTTCTTAAT
85314377 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:85319002 original size:5 final size:5
Alignment explanation
Indices: 85318992--85319083 Score: 50
Period size: 5 Copynumber: 18.0 Consensus size: 5
85318982 GATATGTCTT
* * *
85318992 TAAAA TAAAA T--AA TAAAT TGAAA TGAAAA TAAAAA TCAAAA GAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA T-AAAA T-AAAA T-AAAA TAAAA
*
85319038 -AGAAA -AAGAA AAAAA TAAAA TAAAA TAAAAA TAAGAA T-AAA TAAAA
1 TA-AAA TAA-AA TAAAA TAAAA TAAAA T-AAAA TAA-AA TAAAA TAAAA
85319084 AAATAGGAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
3 3 0.04
4 5 0.07
5 39 0.56
6 23 0.33
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (5 bp):
TAAAA
Found at i:85319057 original size:6 final size:6
Alignment explanation
Indices: 85318993--85319088 Score: 63
Period size: 6 Copynumber: 16.0 Consensus size: 6
85318983 ATATGTCTTT
* * * * * *
85318993 AAAAT- AAAATA ATAAATT GAAATG AAAATA AAAATC AAAAGA AAAAGA
1 AAAATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * *
85319041 AAAAGA AAAAAA TAAAAT- AAAATA AAAATA AGAATA AATAA-A AAAATA
1 AAAATA AAAATA -AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA
85319089 GGAGGATTCA
Statistics
Matches: 73, Mismatches: 12, Indels: 11
0.76 0.12 0.11
Matches are distributed among these distances:
5 12 0.16
6 51 0.70
7 10 0.14
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:85319067 original size:17 final size:17
Alignment explanation
Indices: 85319047--85319085 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
85319037 AAGAAAAAGA
85319047 AAAAAATAA-AATAAA-
1 AAAAAATAAGAATAAAT
85319062 ATAAAAATAAGAATAAAT
1 A-AAAAATAAGAATAAAT
85319080 AAAAAA
1 AAAAAA
85319086 ATAGGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.05
16 8 0.38
17 11 0.52
18 1 0.05
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAAATAAGAATAAAT
Found at i:85319086 original size:48 final size:48
Alignment explanation
Indices: 85318993--85319086 Score: 109
Period size: 48 Copynumber: 2.0 Consensus size: 48
85318983 ATATGTCTTT
* * * * * *
85318993 AAAATAAAATAATAAATTGAAATGAAAATAAAAATCAAAAGAAAAAGA
1 AAAAGAAAAAAATAAAATAAAATAAAAATAAAAATCAAAAAAAAAAGA
*
85319041 AAAAGAAAAAAATAAAATAAAATAAAAATAAGAAT-AAATAAAAAAA
1 AAAAGAAAAAAATAAAATAAAATAAAAATAAAAATCAAA-AAAAAAA
85319087 TAGGAGGATT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
47 3 0.08
48 35 0.92
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (48 bp):
AAAAGAAAAAAATAAAATAAAATAAAAATAAAAATCAAAAAAAAAAGA
Found at i:85320610 original size:18 final size:19
Alignment explanation
Indices: 85320587--85320625 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
85320577 GCTGTTGTAA
85320587 GGTGGT-GCACGGGCGTGT
1 GGTGGTAGCACGGGCGTGT
85320605 GGTGGTGAGCACGGGCGTGT
1 GGTGGT-AGCACGGGCGTGT
85320625 G
1 G
85320626 ACGTGGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
20 13 0.68
ACGTcount: A:0.08, C:0.15, G:0.56, T:0.21
Consensus pattern (19 bp):
GGTGGTAGCACGGGCGTGT
Found at i:85326516 original size:43 final size:43
Alignment explanation
Indices: 85326469--85326612 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
85326459 ATATATTGTT
* * * * *
85326469 TTACATGTTATCACATATCGATGCCACTGTCCCAGACAGGGCC
1 TTACACGTAATCACATATCGATGCCAATGTCCCAGACATGGTC
* * *
85326512 TTACACGGAATCATAATAT-GGTGCCAATGTCCCAGACATGGTC
1 TTACACGTAATCA-CATATCGATGCCAATGTCCCAGACATGGTC
* * *
85326555 TTACACGTAATCTCA-ATACAATGCCAATGTCCCAGACATGGTA
1 TTACACGTAATCACATAT-CGATGCCAATGTCCCAGACATGGTC
*
85326598 TTACATGTAATCACA
1 TTACACGTAATCACA
85326613 ACTCGATAAC
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 75 0.91
44 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
TTACACGTAATCACATATCGATGCCAATGTCCCAGACATGGTC
Found at i:85329997 original size:68 final size:70
Alignment explanation
Indices: 85329925--85330122 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
85329915 ACACCCTGTA
* * * *
85329925 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
85329987 ATAAAT
65 ATAAAT
*
85329993 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
85330058 ATAAAT
65 ATAAAT
*
85330064 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
85330123 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:85330036 original size:41 final size:41
Alignment explanation
Indices: 85329991--85330108 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
85329981 TGAAAGATAA
85329991 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
85330032 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85330062 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85330103 ATGTAG
1 ATGTAG
85330109 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:85330048 original size:71 final size:71
Alignment explanation
Indices: 85329959--85330122 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85329949 GAGATGTATC
85329959 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85330024 AGGACA
66 AGGACA
85330030 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85330095 AGGACA
66 AGGACA
85330101 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
85330123 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:85333811 original size:43 final size:43
Alignment explanation
Indices: 85333735--85333890 Score: 206
Period size: 43 Copynumber: 3.6 Consensus size: 43
85333725 TTCCATATCT
* * * * *
85333735 CAGATATGGTTTTACATGTTATCACATATCGATGCTAATGTCC
1 CAGACATGGTCTTACATGTAATCACATAACGATGCCAATGTCC
* *
85333778 CAGACATGGTCTTACATGAAATCATATAACGATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCACATAACGATGCCAATGTCC
* * *
85333821 TAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATGTCT
1 CAGACATGGTCTTACATGTAATCACATA-ACGATGCCAATGTCC
85333864 CAGACATGGTCTTACATGTAATCACAT
1 CAGACATGGTCTTACATGTAATCACAT
85333891 CTCGGTAATC
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.01
43 97 0.99
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCACATAACGATGCCAATGTCC
Found at i:85337735 original size:38 final size:38
Alignment explanation
Indices: 85337643--85337765 Score: 174
Period size: 39 Copynumber: 3.2 Consensus size: 38
85337633 TGTGTATGAA
* *
85337643 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AT
* *
85337682 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
*
85337720 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA-T
85337760 TGTGCG
1 TGTGCG
85337766 GGTTACATAA
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 25 0.33
39 43 0.57
40 7 0.09
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (38 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
Found at i:85337780 original size:39 final size:40
Alignment explanation
Indices: 85337660--85337800 Score: 132
Period size: 39 Copynumber: 3.6 Consensus size: 40
85337650 ATTGTGATAT
** *
85337660 CCGGGCTAAG-CCCGAAGGCAAATGTGCGAGATATG--ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T-TGACATAA
** *
85337699 CCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
* *
85337737 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT-ACATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
* *
85337776 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85337801 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
36 2 0.02
37 1 0.01
38 21 0.24
39 55 0.62
40 10 0.11
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
Found at i:85337780 original size:77 final size:78
Alignment explanation
Indices: 85337643--85337795 Score: 202
Period size: 77 Copynumber: 2.0 Consensus size: 78
85337633 TGTGTATGAA
* *
85337643 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATCATAACCGGGCTAA
85337708 G-CCCGAAGGCAT
66 GTCCCGAAGGCAT
* * ** * *
85337720 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA-CATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAATGTGCGAGATATCATAACCGGGCTA
*
85337784 TGTCCCGAAGGC
65 AGTCCCGAAGGC
85337796 GTTTGAACGA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
77 37 0.57
78 28 0.43
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATCATAACCGGGCTAA
GTCCCGAAGGCAT
Found at i:85345870 original size:40 final size:39
Alignment explanation
Indices: 85345710--85345872 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
85345700 TGTGTATGAA
*
85345710 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
85345749 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
85345788 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
85345827 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
85345867 TGTGCG
1 TGTGCG
85345873 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:85345888 original size:40 final size:39
Alignment explanation
Indices: 85345710--85345903 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
85345700 TGTGTATGAA
* *
85345710 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
85345749 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
85345788 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
85345827 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
85345867 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
85345904 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:85347657 original size:2 final size:2
Alignment explanation
Indices: 85347650--85347685 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
85347640 GAGACTAGTC
85347650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85347686 GTCATGATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85360335 original size:40 final size:40
Alignment explanation
Indices: 85360276--85360406 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
85360266 CGGGACTTTA
* * *
85360276 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
85360316 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
85360356 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
85360396 CCCGGATATAA
1 CCCGGATATAA
85360407 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:85360421 original size:40 final size:40
Alignment explanation
Indices: 85360293--85360443 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
85360283 ATCACGATTT
* * * **
85360293 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
85360333 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
85360373 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
85360413 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
85360444 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.15
40 80 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:85368950 original size:39 final size:40
Alignment explanation
Indices: 85368850--85368996 Score: 167
Period size: 40 Copynumber: 3.7 Consensus size: 40
85368840 TCGAATGATG
* * *
85368850 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
85368890 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
85368930 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* *
85368968 CCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC
85368997 GAGTCGCTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 22 0.25
39 23 0.26
40 37 0.42
41 7 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:85368995 original size:78 final size:80
Alignment explanation
Indices: 85368850--85369000 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
85368840 TCGAATGATG
* * * *
85368850 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
85368915 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
85368930 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
85368992 CGTGCGAGT
65 CGTGCGAGT
85369001 CGCTATAACG
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 36 0.57
79 15 0.24
80 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:85376804 original size:39 final size:40
Alignment explanation
Indices: 85376704--85376883 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
85376694 TCGAATGATG
* * *
85376704 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
85376744 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
85376784 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
85376822 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
85376863 -CCGGGCTTCGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
85376884 ATTGAGCGAG
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 61 0.53
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:85376849 original size:78 final size:80
Alignment explanation
Indices: 85376704--85376854 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
85376694 TCGAATGATG
* * * *
85376704 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
85376769 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
85376784 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
85376846 CGTGCGAGT
65 CGTGCGAGT
85376855 CGCTATAACC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 36 0.57
79 15 0.24
80 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:85376867 original size:78 final size:80
Alignment explanation
Indices: 85376704--85376883 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 80
85376694 TCGAATGATG
* * * *
85376704 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
85376769 GTGCGAGTTAATAAA
66 GTGCGAGTCAATAAA
* **
85376784 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
**
85376846 CGTGCGAGTCGCTATAA
65 CGTGCGAGTCAATA-AA
**
85376863 -CCGGGCTTCGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
85376884 ATTGAGCGAG
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.54
79 27 0.32
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:85383167 original size:27 final size:26
Alignment explanation
Indices: 85383137--85383371 Score: 206
Period size: 27 Copynumber: 8.7 Consensus size: 26
85383127 CCTCGGATTA
*
85383137 TAAAATTACTAAAGTACCCCTAAATTT-
1 TAAAATTACTAAA-TA-CCCTCAATTTG
*
85383164 TAAAATTACTGAAATACCCCCGAA-TTG
1 TAAAATTACT-AAATACCCTC-AATTTG
* **
85383191 TAAAATTATCGAAATACCCCTGGA-TTG
1 TAAAATTA-CTAAATA-CCCTCAATTTG
* *
85383218 TAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTA-CTAAATACCCTCAATTTG
*
85383245 TAAAATTACCAAAATACCCTCAATTTG
1 TAAAATTA-CTAAATACCCTCAATTTG
* *
85383272 TAAAATTATCGAAATACCCTTAATTTG
1 TAAAATTA-CTAAATACCCTCAATTTG
*
85383299 TAAAATTACTAAAATACCCTTAATTTG
1 TAAAATTACT-AAATACCCTCAATTTG
** *
85383326 TAAAATTACTGAAATGTCCTCAGTTTG
1 TAAAATTACT-AAATACCCTCAATTTG
*
85383353 TAAAATTATCGAAATACCC
1 TAAAATTA-CTAAATACCC
85383372 ATGTAGTGTA
Statistics
Matches: 178, Mismatches: 22, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
26 12 0.07
27 158 0.89
28 8 0.04
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (26 bp):
TAAAATTACTAAATACCCTCAATTTG
Found at i:85383273 original size:81 final size:81
Alignment explanation
Indices: 85383120--85383401 Score: 320
Period size: 81 Copynumber: 3.5 Consensus size: 81
85383110 GTGGGCCACA
* * * *
85383120 CGAAATACCTC-GGATTATAAAATTACTAAAGTACCCCTAAATTT-TAAAATTACTGAAATACCC
1 CGAAATACCCCTGGATTGTAAAATTACCAAAATA-CCCTAAATTTGTAAAATTACTGAAATACCC
*
85383183 CCGAA-TTGTAAAATTAT
65 TC-AATTTGTAAAATTAT
** **
85383200 CGAAATACCCCTGGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCT
1 CGAAATACCCCTGGATTGTAAAATTACCAAAATACCCTAAATTTGTAAAATTACTGAAATACCCT
85383265 CAATTTGTAAAATTAT
66 CAATTTGTAAAATTAT
** * * **
85383281 CGAAATA-CCCTTAATTTGTAAAATTACTAAAATACCCTTAATTTGTAAAATTACTGAAATGTCC
1 CGAAATACCCCTGGA-TTGTAAAATTACCAAAATACCCTAAATTTGTAAAATTACTGAAATACCC
*
85383345 TCAGTTTGTAAAATTAT
65 TCAATTTGTAAAATTAT
* * * *
85383362 CGAAATACCCATGTAGTGTAAAATTACCGAAATAACCCTA
1 CGAAATACCCCTGGATTGTAAAATTACCAAAAT-ACCCTA
85383402 TAAGGTAAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
80 25 0.15
81 136 0.80
82 9 0.05
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
CGAAATACCCCTGGATTGTAAAATTACCAAAATACCCTAAATTTGTAAAATTACTGAAATACCCT
CAATTTGTAAAATTAT
Found at i:85383353 original size:54 final size:56
Alignment explanation
Indices: 85383121--85383360 Score: 234
Period size: 54 Copynumber: 4.5 Consensus size: 56
85383111 TGGGCCACAC
* * *
85383121 GAAATA-CCTCGGA-TTATAAAATTACTAAAGTACCCCTAAATTT-TAAAATTACT
1 GAAATACCCTCAGATTTGTAAAATTACTAAAATACCCCTAAATTTGTAAAATTACT
* * * ** *
85383174 GAAATACCC-CCGAATTGTAAAATTA-TCGAAATACCCCTGGA-TTGTAAAATTACC
1 GAAATACCCTCAGATTTGTAAAATTACT-AAAATACCCCTAAATTTGTAAAATTACT
* * *
85383228 AAAATACCCTC-GATTTGTAAAATTACCAAAATA-CCCTCAATTTGTAAAATTA-T
1 GAAATACCCTCAGATTTGTAAAATTACTAAAATACCCCTAAATTTGTAAAATTACT
* *
85383281 CGAAATACCCTTA-ATTTGTAAAATTACTAAAATA-CCCTTAATTTGTAAAATTACT
1 -GAAATACCCTCAGATTTGTAAAATTACTAAAATACCCCTAAATTTGTAAAATTACT
**
85383336 GAAATGTCCTCAG-TTTGTAAAATTA
1 GAAATACCCTCAGATTTGTAAAATTA
85383361 TCGAAATACC
Statistics
Matches: 155, Mismatches: 21, Indels: 21
0.79 0.11 0.11
Matches are distributed among these distances:
53 17 0.11
54 136 0.88
55 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (56 bp):
GAAATACCCTCAGATTTGTAAAATTACTAAAATACCCCTAAATTTGTAAAATTACT
Found at i:85383381 original size:27 final size:27
Alignment explanation
Indices: 85383160--85383400 Score: 192
Period size: 27 Copynumber: 8.9 Consensus size: 27
85383150 GTACCCCTAA
* *
85383160 ATTT-TAAAATTACTGAAATACCCCCG-
1 ATTTGTAAAATTACCGAAATA-CCCTGT
* * *
85383186 AATTGTAAAATTATCGAAATACCCCTGG
1 ATTTGTAAAATTACCGAAATA-CCCTGT
*
85383214 A-TTGTAAAATTACCAAAATACCCTCG-
1 ATTTGTAAAATTACCGAAATACCCT-GT
* **
85383240 ATTTGTAAAATTACCAAAATACCCTCA
1 ATTTGTAAAATTACCGAAATACCCTGT
*
85383267 ATTTGTAAAATTATCGAAATACCCT-T
1 ATTTGTAAAATTACCGAAATACCCTGT
**
85383293 AATTTGTAAAATTACTAAAATACCCT-T
1 -ATTTGTAAAATTACCGAAATACCCTGT
* ** *
85383320 AATTTGTAAAATTACTGAAATGTCCT-C
1 -ATTTGTAAAATTACCGAAATACCCTGT
*
85383347 AGTTTGTAAAATTATCGAAATACCCATGT
1 A-TTTGTAAAATTACCGAAATACCC-TGT
*
85383376 A-GTGTAAAATTACCGAAATAACCCT
1 ATTTGTAAAATTACCGAAAT-ACCCT
85383401 ATAAGGTAAA
Statistics
Matches: 181, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
26 9 0.05
27 165 0.91
28 6 0.03
29 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
ATTTGTAAAATTACCGAAATACCCTGT
Found at i:85383382 original size:54 final size:54
Alignment explanation
Indices: 85383160--85383400 Score: 217
Period size: 54 Copynumber: 4.5 Consensus size: 54
85383150 GTACCCCTAA
* * * * *
85383160 ATTT-TAAAATTACTGAAATACCC-CCGAATTGTAAAATTATCGAAATACCCCTGG
1 ATTTGTAAAATTACCGAAATACCCTCAG-TTTGTAAAATTATCAAAATA-CCCTGT
* * **
85383214 A-TTGTAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTCA
1 ATTTGTAAAATTACCGAAATACCCTCAG-TTTGTAAAATTATCAAAATACCCTGT
* * *
85383267 ATTTGTAAAATTATCGAAATACCCTTAATTTGTAAAATTA-CTAAAATACCCT-T
1 ATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATC-AAAATACCCTGT
* ** *
85383320 AATTTGTAAAATTACTGAAATGTCCTCAGTTTGTAAAATTATCGAAATACCCATGT
1 -ATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATCAAAATACCC-TGT
*
85383376 A-GTGTAAAATTACCGAAATAACCCT
1 ATTTGTAAAATTACCGAAAT-ACCCT
85383401 ATAAGGTAAA
Statistics
Matches: 154, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
53 8 0.05
54 138 0.90
55 7 0.05
56 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
ATTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTATCAAAATACCCTGT
Found at i:85383902 original size:27 final size:27
Alignment explanation
Indices: 85383825--85383913 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
85383815 CCTTGGTCAA
*
85383825 ATCATATTT-CCCAGTGGCTATGTGCCT
1 ATCATATTTACCCA-TGGCTATGTGCCG
*** * *
85383852 ATCATATTTATTGATGACTTTGTGCCG
1 ATCATATTTACCCATGGCTATGTGCCG
*
85383879 ATCATATTTACCCATGGCTGTGTGCCG
1 ATCATATTTACCCATGGCTATGTGCCG
*
85383906 ATTATATT
1 ATCATATT
85383914 ACCGTCGCTG
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.40
Consensus pattern (27 bp):
ATCATATTTACCCATGGCTATGTGCCG
Found at i:85395534 original size:56 final size:55
Alignment explanation
Indices: 85395454--85395607 Score: 202
Period size: 56 Copynumber: 2.7 Consensus size: 55
85395444 ATTTATATGA
* *
85395454 GGCATCGA-ATTGTGATTCCAATATATGTGTGCGAGTAAGATCAAGTTTTATACGTT
1 GGCATCGATA-TGTGATT-CGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTT
* *
85395510 GGCATTGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
1 GGCATCGATATGTGATTC-GATATATGTGTGCGAGTAAGACCAAGTTTTATACGTT
* * *
85395566 GGCATCGATATGTGACTTCGATATATGTTTTCAAGTAAGACC
1 GGCATCGATATGTGA-TTCGATATATGTGTGCGAGTAAGACC
85395608 CTGTCTGGGA
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
55 1 0.01
56 82 0.94
57 4 0.05
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (55 bp):
GGCATCGATATGTGATTCGATATATGTGTGCGAGTAAGACCAAGTTTTATACGTT
Found at i:85397998 original size:2 final size:2
Alignment explanation
Indices: 85397991--85398016 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
85397981 CGGCTCTAGC
85397991 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
85398017 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85398944 original size:40 final size:40
Alignment explanation
Indices: 85398889--85399096 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
85398879 TGAATGATAC
* *
85398889 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
85398929 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
85398969 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
85399009 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
85399049 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
85399089 CC-GGCTAA
1 CCGGGCTAA
85399097 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:85402400 original size:20 final size:20
Alignment explanation
Indices: 85402375--85402439 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
85402365 TACTTCGGTA
85402375 CCCCTGAATGCACATACGTG
1 CCCCTGAATGCACATACGTG
* * * *
85402395 CCCCTG-TTGTAC-TTCGGTA
1 CCCCTGAATGCACATAC-GTG
* *
85402414 CCCCTTAATGCACATATGTG
1 CCCCTGAATGCACATACGTG
85402434 CCCCTG
1 CCCCTG
85402440 TTGTACATCG
Statistics
Matches: 31, Mismatches: 11, Indels: 6
0.65 0.23 0.12
Matches are distributed among these distances:
18 2 0.06
19 11 0.35
20 17 0.55
21 1 0.03
ACGTcount: A:0.18, C:0.35, G:0.18, T:0.28
Consensus pattern (20 bp):
CCCCTGAATGCACATACGTG
Found at i:85402415 original size:39 final size:39
Alignment explanation
Indices: 85402361--85402454 Score: 154
Period size: 39 Copynumber: 2.4 Consensus size: 39
85402351 ATTATACTCA
85402361 GTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCT
1 GTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCT
* *
85402400 GTTGTACTTCGGTACCCCTTAATGCACATATGTGCCCCT
1 GTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCT
*
85402439 GTTGTACATC-GTACCC
1 GTTGTACTTCGGTACCC
85402455 ATGATTCACA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 6 0.12
39 46 0.88
ACGTcount: A:0.18, C:0.32, G:0.19, T:0.31
Consensus pattern (39 bp):
GTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCT
Found at i:85406960 original size:42 final size:42
Alignment explanation
Indices: 85406849--85407003 Score: 202
Period size: 42 Copynumber: 3.7 Consensus size: 42
85406839 TACCATACCA
* * * *
85406849 ATGCCATATCCTAGATATGGTCTTACATGAAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * * * *
85406891 AGGACAATAGCCCAGCTATGGTCTTACACGAAGTCTAATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
85406934 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
85406976 ATTCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
85407004 ATAATCTCAG
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 63 0.66
43 33 0.34
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:85410117 original size:24 final size:24
Alignment explanation
Indices: 85410077--85410126 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
85410067 ATATATCACA
*
85410077 ATTATAACATTACATAATATAAAT
1 ATTATAACATTACATAAAATAAAT
* *
85410101 ATTATAAACATT-TATAAAATAGAT
1 ATTAT-AACATTACATAAAATAAAT
85410125 AT
1 AT
85410127 ATAGTTAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (24 bp):
ATTATAACATTACATAAAATAAAT
Found at i:85411120 original size:20 final size:18
Alignment explanation
Indices: 85411073--85411179 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
85411063 CAAGGTAAAC
85411073 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
85411090 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
85411110 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
85411129 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
*
85411146 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
85411166 ATTAAAATAATATT
1 ATTAAATTAATATT
85411180 ATTTTTAGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.01
17 15 0.21
18 9 0.13
19 21 0.30
20 24 0.34
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:85411167 original size:37 final size:36
Alignment explanation
Indices: 85411073--85411180 Score: 107
Period size: 37 Copynumber: 2.9 Consensus size: 36
85411063 CAAGGTAAAC
*
85411073 ATTAAATTAA-ATTTAA-TATTAAGATAATCACTTTAAT
1 ATTAAATTAATATTAAACTATTAAGATAAT-A--TTAAT
*
85411110 ATTAAATTAATA-AAATACTATTAAGATAAGTATTAA-
1 ATTAAATTAATATTAA-ACTATTAAGATAA-TATTAAT
*
85411146 ATTAAATTTAATATTAAACTATTAAAATAATATTA
1 ATTAAA-TTAATATTAAACTATTAAGATAATATTA
85411181 TTTTTAGAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
36 11 0.18
37 33 0.54
38 4 0.07
39 12 0.20
40 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (36 bp):
ATTAAATTAATATTAAACTATTAAGATAATATTAAT
Found at i:85413198 original size:40 final size:40
Alignment explanation
Indices: 85413153--85413282 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
85413143 CGGAATACAA
85413153 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
85413193 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
85413233 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
85413273 CCGGATATAA
1 CCGGATATAA
85413283 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:85413297 original size:40 final size:40
Alignment explanation
Indices: 85413153--85413316 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
85413143 CGGAATACAA
* **
85413153 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
85413193 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
85413233 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
85413273 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
85413313 CCGG
1 CCGG
85413317 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:85421236 original size:40 final size:40
Alignment explanation
Indices: 85421191--85421320 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
85421181 CGGAATACAA
85421191 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
85421231 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
85421271 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
85421311 CCGGATATAA
1 CCGGATATAA
85421321 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:85421335 original size:40 final size:40
Alignment explanation
Indices: 85421191--85421354 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
85421181 CGGAATACAA
* **
85421191 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
85421231 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
85421271 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
85421311 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
85421351 CCGG
1 CCGG
85421355 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:85424420 original size:22 final size:22
Alignment explanation
Indices: 85424380--85424455 Score: 100
Period size: 23 Copynumber: 3.4 Consensus size: 22
85424370 TCAGCTCGTA
85424380 AGAGCTTACTATTTTAGCTCATT
1 AGAGCTTACTATTTTAGCTCA-T
*
85424403 GGAGCTTACTA-TTTAGCTCGAT
1 AGAGCTTACTATTTTAGCTC-AT
*
85424425 AGAGCTTACCATTTTAGCTCAAT
1 AGAGCTTACTATTTTAGCTC-AT
85424448 AGAGCTTA
1 AGAGCTTA
85424456 TTGTTCATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.38
23 29 0.62
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (22 bp):
AGAGCTTACTATTTTAGCTCAT
Found at i:85430393 original size:48 final size:48
Alignment explanation
Indices: 85430322--85430947 Score: 1000
Period size: 48 Copynumber: 13.0 Consensus size: 48
85430312 CAAGATAAAT
* *
85430322 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTAATATG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
***
85430370 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAGCAGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
85430418 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
85430466 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCCAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
85430514 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
85430562 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTAATATG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
85430610 AAATATATGTGTAATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
85430658 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
85430706 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * * * *
85430754 AAATATGTCTGAGATATGTATATGTGGTAAAGCGGAATAGCTAATATG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
85430802 AAATATATGTGTGATATGTATATGTGGTAAAGTCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
85430850 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
85430898 AAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
85430946 AA
1 AA
85430948 TGTTGTAACA
Statistics
Matches: 535, Mismatches: 43, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 535 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:85431042 original size:37 final size:37
Alignment explanation
Indices: 85430992--85431063 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
85430982 GGAAATATAT
*
85430992 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
* *
85431029 TCCGGGTGAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
85431064 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:85439943 original size:46 final size:46
Alignment explanation
Indices: 85439796--85439943 Score: 144
Period size: 46 Copynumber: 3.2 Consensus size: 46
85439786 GTAACCCACC
*
85439796 CCTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * *** *
85439845 -CTCA-TGAACTCGGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
85439888 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
85439936 CCT-AGTGA
1 CCTAAGTGA
85439944 CATGTCACTT
Statistics
Matches: 80, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 36 0.45
47 29 0.36
48 9 0.11
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:85442377 original size:40 final size:40
Alignment explanation
Indices: 85442332--85442498 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
85442322 CGGAATATAA
85442332 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85442372 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85442412 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85442452 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
85442491 CCGGATAT
1 CCGGATAT
85442499 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85442482 original size:80 final size:79
Alignment explanation
Indices: 85442332--85442498 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
85442322 CGGAATATAA
* *
85442332 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
85442397 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
85442412 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
85442474 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
85442491 CCGGATAT
1 CCGGATAT
85442499 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:85443346 original size:17 final size:19
Alignment explanation
Indices: 85443323--85443368 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
85443313 AAGAAGCATG
85443323 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
85443341 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
85443359 AATCATGCTC
1 AATCATGCTC
85443369 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:85450346 original size:40 final size:40
Alignment explanation
Indices: 85450301--85450467 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
85450291 CGGAATATAA
85450301 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85450341 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85450381 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85450421 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
85450460 CCGGATAT
1 CCGGATAT
85450468 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85450451 original size:80 final size:79
Alignment explanation
Indices: 85450301--85450467 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
85450291 CGGAATATAA
* *
85450301 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
85450366 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
85450381 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
85450443 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
85450460 CCGGATAT
1 CCGGATAT
85450468 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:85451313 original size:17 final size:19
Alignment explanation
Indices: 85451290--85451335 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
85451280 AAGAAGCATG
85451290 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
85451308 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
85451326 AATCATGCTC
1 AATCATGCTC
85451336 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:85453976 original size:40 final size:40
Alignment explanation
Indices: 85453850--85453978 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
85453840 ATGCTGGAAA
* *
85453850 TTATATCC-GGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
85453889 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
85453929 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
85453969 TTATATCCGG
1 TTATATCCGG
85453979 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 10 0.13
40 65 0.87
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:85462024 original size:40 final size:40
Alignment explanation
Indices: 85461897--85462026 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
85461887 ATGCTGGAAA
* *
85461897 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
85461937 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
85461977 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
85462017 TTATATCCGG
1 TTATATCCGG
85462027 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:85464010 original size:16 final size:16
Alignment explanation
Indices: 85463989--85464021 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
85463979 GATGTCCCCA
85463989 ATACTAGTTCAATAGC
1 ATACTAGTTCAATAGC
85464005 ATACTAGTTCAATAGC
1 ATACTAGTTCAATAGC
85464021 A
1 A
85464022 AACTCAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (16 bp):
ATACTAGTTCAATAGC
Found at i:85467670 original size:25 final size:25
Alignment explanation
Indices: 85467571--85467671 Score: 94
Period size: 25 Copynumber: 4.0 Consensus size: 25
85467561 TCATGTACAT
* * *
85467571 GTATGCTTATACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAGATCG
* * *
85467596 ATATGCTCACTCGAGCTGTAGATTG
1 GTATGCTCACACGAGCTGTAGATCG
* * * *
85467621 GTATACTCTCACGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCG
* *
85467646 GTATGCTCACACAAGCTGTGGATCG
1 GTATGCTCACACGAGCTGTAGATCG
85467671 G
1 G
85467672 AACGTAGCTA
Statistics
Matches: 57, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAGATCG
Found at i:85472222 original size:22 final size:22
Alignment explanation
Indices: 85472195--85472250 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
85472185 AAACAGGGTC
85472195 ACACGCCCGTGTGGACACAGGG
1 ACACGCCCGTGTGGACACAGGG
85472217 ACACGCCCGTGTGGACACAGGG
1 ACACGCCCGTGTGGACACAGGG
**
85472239 GTACGCCCGTGT
1 ACACGCCCGTGT
85472251 CTCTCATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.20, C:0.32, G:0.36, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGGACACAGGG
Found at i:85476233 original size:48 final size:48
Alignment explanation
Indices: 85476162--85476436 Score: 469
Period size: 48 Copynumber: 5.7 Consensus size: 48
85476152 ACAGCTTGTA
* *
85476162 GTGAAATGTGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
85476210 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCTAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
85476258 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
85476306 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
85476354 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
85476404 GTGAAATATGTATGAGATATGTATATGTGGTAA
1 GTGAAATATGTATGAGATATGTATATGTGGTAA
85476437 TGTAACACCC
Statistics
Matches: 216, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
48 169 0.78
49 4 0.02
50 43 0.20
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (48 bp):
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:85477951 original size:29 final size:29
Alignment explanation
Indices: 85477909--85477992 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
85477899 TGCCGTATTT
**
85477909 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
85477938 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
85477967 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
85477993 TCTCATCACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:85479558 original size:48 final size:48
Alignment explanation
Indices: 85479487--85479860 Score: 622
Period size: 48 Copynumber: 7.8 Consensus size: 48
85479477 GGATGTCACA
* * *
85479487 GGTAAAGCCAAATGGCTAGTGTGAAATATGAATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
*
85479535 GGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
*
85479583 GGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
* *
85479631 GGTAAAGCCAAATGGCTAATGTGAAATGTGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
* *
85479679 GGTAAAGCCGAATGGCTAATGTGAAATGTATATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
* *
85479727 GGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
*
85479775 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
* *
85479823 GGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
85479861 GTGTGTATAT
Statistics
Matches: 311, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 311 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
Found at i:85480051 original size:37 final size:37
Alignment explanation
Indices: 85480001--85480103 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
85479991 GGAAATATAT
*
85480001 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85480038 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85480075 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
85480104 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85481442 original size:40 final size:40
Alignment explanation
Indices: 85481390--85481786 Score: 580
Period size: 40 Copynumber: 9.9 Consensus size: 40
85481380 TGAGAGTTAG
* ** *
85481390 ATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAATGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
85481430 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
85481470 -TATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
85481509 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
85481549 ATAACCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
*
85481589 ATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
** * * *
85481629 ATATCTAGGCTAGGTCCCGAAGAGTATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
85481669 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * **
85481709 ATATCAGGGTTAAGTCCCGAAGAGCATTCAAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
85481749 ATATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
85481787 ATGTGTATTC
Statistics
Matches: 320, Mismatches: 36, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 37 0.12
40 283 0.88
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
Found at i:85485406 original size:48 final size:48
Alignment explanation
Indices: 85485346--85485733 Score: 650
Period size: 48 Copynumber: 8.0 Consensus size: 48
85485336 TGAAATGTAA
85485346 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
85485394 ATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAATGTGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
85485442 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
85485490 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT
* * *
85485540 ATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
85485588 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* * *
85485636 ATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
85485684 ATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
85485732 AT
1 AT
85485734 TGTAACACCC
Statistics
Matches: 321, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 275 0.86
49 4 0.01
50 42 0.13
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
Found at i:85485678 original size:194 final size:194
Alignment explanation
Indices: 85485346--85485729 Score: 669
Period size: 194 Copynumber: 2.0 Consensus size: 194
85485336 TGAAATGTAA
*
85485346 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATATGT
* *
85485411 GGTAAAGCCGAAAGGCTAATGTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 GGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCT
* * *
85485476 AATGTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
131 AATGTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* *
85485540 ATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGAATGAGATATGTATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATATGT
* *
85485605 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCT
66 GGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCT
*
85485670 AGTGTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
131 AATGTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
85485730 GTATTGTAAC
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
194 179 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (194 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATATGT
GGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCT
AATGTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
Found at i:85487148 original size:29 final size:29
Alignment explanation
Indices: 85487087--85487185 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
85487077 ACAGTAAGTC
*
85487087 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
85487115 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
85487144 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
85487172 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85487186 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:85488728 original size:48 final size:48
Alignment explanation
Indices: 85488656--85488954 Score: 535
Period size: 48 Copynumber: 6.2 Consensus size: 48
85488646 GGGCTGTCAC
*
85488656 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
85488704 GTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
85488752 GTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
85488800 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
85488848 ATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
85488896 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
85488944 ATGTAGGAGAT
1 ATGTATGAGAT
85488955 GTGTGTATAT
Statistics
Matches: 243, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 243 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
Found at i:85489145 original size:37 final size:37
Alignment explanation
Indices: 85489095--85489234 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
85489085 GGAAATATAT
85489095 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
85489132 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85489169 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85489206 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
85489235 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85495444 original size:46 final size:45
Alignment explanation
Indices: 85495392--85495595 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
85495382 GTCGATGCCG
* * *
85495392 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
85495438 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
85495482 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
85495528 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
85495574 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
85495596 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:85495595 original size:92 final size:91
Alignment explanation
Indices: 85495435--85495651 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
85495425 CCGTGCTGAC
*
85495435 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
85495499 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
85495525 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
85495589 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
85495617 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
85495652 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:85495618 original size:46 final size:44
Alignment explanation
Indices: 85495435--85495643 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
85495425 CCGTGCTGAC
* *
85495435 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
85495479 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
85495525 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
85495571 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
85495617 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
85495644 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:85501859 original size:18 final size:18
Alignment explanation
Indices: 85501838--85501884 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
85501828 TATTGTCTAT
85501838 TTTTTCTTTTTAGTTTTA-
1 TTTTTCTTTTTA-TTTTAG
*
85501856 TTTTTATTTTTATTTTAG
1 TTTTTCTTTTTATTTTAG
85501874 TTTTTACTTTT
1 TTTTT-CTTTT
85501885 AAAAGTTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.20
18 16 0.64
19 4 0.16
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (18 bp):
TTTTTCTTTTTATTTTAG
Found at i:85501884 original size:6 final size:6
Alignment explanation
Indices: 85501838--85501885 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
85501828 TATTGTCTAT
* * *
85501838 TTTTTC TTTTTA GTTTTA TTTTTA TTTTTA -TTTTA GTTTTTA CTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA
85501886 AAAGTTACGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 5 0.14
6 26 0.72
7 5 0.14
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:85514876 original size:18 final size:18
Alignment explanation
Indices: 85514845--85514889 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
85514835 TATTTAAGAA
85514845 ATTAATAT--AATAATAT
1 ATTAATATAAAATAATAT
85514861 ATTAATATAAAATAATAT
1 ATTAATATAAAATAATAT
* *
85514879 AATAAAATAAA
1 ATTAATATAAA
85514890 GCATATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 8 0.32
18 17 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTAATATAAAATAATAT
Found at i:85518529 original size:47 final size:47
Alignment explanation
Indices: 85518407--85518792 Score: 440
Period size: 47 Copynumber: 8.7 Consensus size: 47
85518397 GTTATACGTG
* * * * *
85518407 TAACGTGGTACTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
*
85518454 GTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* * *
85518502 TAGCGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
85518540 TAACGTGGTGCTAAGTGGATATGCCA-----ACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* * * *
85518582 TGACGTGGTGCTAAGTTGATATGTCATGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* *
85518629 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
85518667 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* *
85518714 TAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
*
85518761 TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
85518793 AACATGTAAC
Statistics
Matches: 286, Mismatches: 29, Indels: 47
0.79 0.08 0.13
Matches are distributed among these distances:
33 1 0.00
34 1 0.00
35 2 0.01
36 2 0.01
38 55 0.19
39 1 0.00
40 2 0.01
41 2 0.01
42 23 0.08
44 4 0.01
45 4 0.01
46 2 0.01
47 146 0.51
48 41 0.14
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
Found at i:85518556 original size:85 final size:87
Alignment explanation
Indices: 85518448--85518830 Score: 372
Period size: 85 Copynumber: 4.4 Consensus size: 87
85518438 ACACATATTG
*
85518448 ATACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGCGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGCGTGGTGC
85518513 TAAGTGGATATACCACGGTTA-
66 TAAGTGGATATACCACGGTTAC
85518534 A-ACATGTAACGTGGTGCTAAGTGGATATGCCA-----ACATATATTGATTCATT-GACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAG-CGTGGTG
* ** *
85518592 CTAAGTTGATATGTCATGGTTAC
65 CTAAGTGGATATACCACGGTTAC
* * *
85518615 ATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG--T-A--A-C
1 ATACA-TG------TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGC
*
85518671 GTGGTGCTAAGTGGATATGCCACGGTTAC
59 GTGGTGCTAAGTGGATATACCACGGTTAC
* * * *
85518700 ATATATTGATTCATTAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATTAAC
1 ATACA-TG------TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGC
85518765 GTGGTGCTAAGTGGATATACCACGGTTA-
59 GTGGTGCTAAGTGGATATACCACGGTTAC
*
85518793 A-ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
85518831 TACATGTTAA
Statistics
Matches: 252, Mismatches: 20, Indels: 51
0.78 0.06 0.16
Matches are distributed among these distances:
79 1 0.00
80 42 0.17
81 1 0.00
82 2 0.01
83 2 0.01
85 129 0.51
86 2 0.01
87 2 0.01
88 3 0.01
89 26 0.10
90 1 0.00
91 5 0.02
92 4 0.02
93 3 0.01
94 29 0.12
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (87 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGCGTGGTGC
TAAGTGGATATACCACGGTTAC
Found at i:85518760 original size:132 final size:132
Alignment explanation
Indices: 85518373--85518830 Score: 728
Period size: 132 Copynumber: 3.5 Consensus size: 132
85518363 ATAAAAAAAT
* * * * * * *
85518373 GTGGTGCTAAGTGGATACACCATGGTTATACGTGTAACGTGGTACTAAGTGGATATACCACGATT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
* * * * *
85518438 ACACATATTGATACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
66 ACATATATTGATTCAT-TAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATT
*
85518503 AGC
130 AAC
85518506 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCA-----
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
* *
85518566 ACATATATTGATTCATTGACGTGGTGCTAAGTTGATATGTCATGGTTACATATATTGATTCATTA
66 ACATATATTGATTCATTAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATTA
85518631 AC
131 AC
85518633 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
85518698 ACATATATTGATTCATTAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATTA
66 ACATATATTGATTCATTAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATTA
85518763 AC
131 AC
*
85518765 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCATGGTT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
85518830 A
66 A
85518831 TACATGTTAA
Statistics
Matches: 303, Mismatches: 17, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
127 105 0.35
128 14 0.05
132 130 0.43
133 54 0.18
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (132 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
ACATATATTGATTCATTAACGTGGTGCTAAGTTGATATGTCACGGTTACATATATTGATTCATTA
AC
Found at i:85519053 original size:12 final size:12
Alignment explanation
Indices: 85519036--85519061 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85519026 GAATTATGAG
85519036 TTAGATATGTGA
1 TTAGATATGTGA
85519048 TTAGATATGTGA
1 TTAGATATGTGA
85519060 TT
1 TT
85519062 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (12 bp):
TTAGATATGTGA
Found at i:85528865 original size:8 final size:8
Alignment explanation
Indices: 85528854--85528898 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
85528844 TTTAAGAAAT
85528854 TAATATAA
1 TAATATAA
*
85528862 TAATATAT
1 TAATATAA
85528870 TAATATAAAA
1 TAATAT--AA
85528880 TAATATAA
1 TAATATAA
*
85528888 TAATAAAA
1 TAATATAA
85528896 TAA
1 TAA
85528899 AGCATATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 25 0.78
10 7 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAATATAA
Found at i:85528883 original size:18 final size:16
Alignment explanation
Indices: 85528852--85528898 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
85528842 TATTTAAGAA
85528852 ATTAATATAATAATAT
1 ATTAATATAATAATAT
85528868 ATTAATATAAAATAATAT
1 ATTAATAT--AATAATAT
* *
85528886 AATAATAAAATAA
1 ATTAATATAATAA
85528899 AGCATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTAATATAATAATAT
Found at i:85534905 original size:24 final size:24
Alignment explanation
Indices: 85534859--85534917 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
85534849 TAAAGTTGAA
85534859 TAATTAAATTA-ATCTAACAAAAT
1 TAATTAAATTATATCTAACAAAAT
*
85534882 TAATTAAATTATATCTAACCAAAT
1 TAATTAAATTATATCTAACAAAAT
85534906 TAATTAAATTAT
1 TAATTAAATTAT
85534918 GTCGATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.32
24 23 0.68
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (24 bp):
TAATTAAATTATATCTAACAAAAT
Found at i:85541371 original size:48 final size:48
Alignment explanation
Indices: 85541315--85541789 Score: 565
Period size: 48 Copynumber: 9.9 Consensus size: 48
85541305 ATACTAGGGT
* *
85541315 TATGTGAGCCAGTGTAAGTCCATGTTTGGGACATGGCATCAGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * * *
85541363 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGACATCGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* *
85541411 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * ** * *
85541459 TATGTGAGCCAGTGTAAGACCATATTTGGAACATAGCATCAACATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * * * * *
85541507 GA-GAAGAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGTCTCAA
1 TATG-TGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * *
85541555 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * *
85541603 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * *
85541651 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * * *
85541699 TAGGTGAGCTAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
* * *
85541747 CATGTGGGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
85541790 ATCTTACCCT
Statistics
Matches: 353, Mismatches: 72, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
47 1 0.00
48 351 0.99
49 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
Found at i:85541484 original size:96 final size:96
Alignment explanation
Indices: 85541315--85541791 Score: 686
Period size: 96 Copynumber: 5.0 Consensus size: 96
85541305 ATACTAGGGT
* * * *
85541315 TATGTGAGCCAGTGTAAGTCCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
* *
85541380 GACCATATTTGGAACATGACATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* *
85541411 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
* * **
85541476 GACCATATTTGGAACATAGCATCAACATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
85541507 GA-GAAGAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGTCTCAATATGTGAGCCAGTGTA
1 TATG-AGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTA
*
85541571 AGACCATGTTTGGAACATGGCATTGGCATTGA
65 AGACCATGTTTGGAACATGGCATCGGCATTGA
*
85541603 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
85541668 GACCATGTTTGGAACATGGCATCAGCATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * * *
85541699 TAGGTGAGCTAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCTACATGTGGGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
85541764 GACCATGTTTGGGACATGGCATCGGCAT
66 GACCATGTTTGGAACATGGCATCGGCAT
85541792 CTTACCCTTT
Statistics
Matches: 341, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
95 1 0.00
96 339 0.99
97 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:85545803 original size:21 final size:21
Alignment explanation
Indices: 85545777--85545817 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
85545767 ACATTGTTTA
85545777 GTAAATTAGTTTATGAAATTC
1 GTAAATTAGTTTATGAAATTC
85545798 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTTATGAAATT
85545818 AGAATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTAGTTTATGAAATTC
Found at i:85546516 original size:39 final size:39
Alignment explanation
Indices: 85546462--85546591 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
85546452 GCATGATAAT
85546462 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
85546501 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* * *
85546540 TAGAAACATATCCAGACTTGAGGT-CGCAGGCTACATGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
85546578 TGG-AATATATCCGG
1 TGGAAACATATCCGG
85546592 GCCTAAAGTC
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
37 9 0.11
38 15 0.18
39 61 0.72
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:85546606 original size:77 final size:78
Alignment explanation
Indices: 85546464--85546619 Score: 208
Period size: 77 Copynumber: 2.0 Consensus size: 78
85546454 ATGATAATTG
* * * * *
85546464 GAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCCGGACTTGAGGTCCGC
1 GAAACATATCCAGACTTGAGGTCCGCAGGCTACATGCTGGAAACATATCCGGACCTAAAGTCCGC
85546529 AGGCTACGTGCTA
66 AGGCTACGTGCTA
* *
85546542 GAAACATATCCAGACTTGAGGT-CGCAGGCTACATGCTGG-AATATATCCGGGCCTAAAGTCCCG
1 GAAACATATCCAGACTTGAGGTCCGCAGGCTACATGCTGGAAACATATCCGGACCTAAAGT-CCG
**
85546605 CAGGCTTTGTGCTA
65 CAGGCTACGTGCTA
85546619 G
1 G
85546620 TAGCTGGATT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 15 0.22
77 32 0.47
78 21 0.31
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (78 bp):
GAAACATATCCAGACTTGAGGTCCGCAGGCTACATGCTGGAAACATATCCGGACCTAAAGTCCGC
AGGCTACGTGCTA
Found at i:85548227 original size:12 final size:12
Alignment explanation
Indices: 85548210--85548243 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
85548200 TCAGTGGTAT
85548210 GTGAGTTTCCGG
1 GTGAGTTTCCGG
85548222 GTGAGTTTCCGG
1 GTGAGTTTCCGG
* *
85548234 ATGTGTTTCC
1 GTGAGTTTCC
85548244 AGAAGAGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.18, G:0.35, T:0.38
Consensus pattern (12 bp):
GTGAGTTTCCGG
Found at i:85552394 original size:13 final size:13
Alignment explanation
Indices: 85552376--85552419 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
85552366 TTCTTTCGAA
85552376 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
85552389 TCTTTTTTTTGTT
1 TCTTTTTTTTCTT
85552402 GT-TTTTTTTTCTT
1 -TCTTTTTTTTCTT
85552415 TCTTT
1 TCTTT
85552420 ATATATACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 25 0.93
14 1 0.04
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:85562657 original size:18 final size:18
Alignment explanation
Indices: 85562622--85562655 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85562612 GTACAAGAGC
85562622 CTCAACGCAAGGACAAAG
1 CTCAACGCAAGGACAAAG
*
85562640 CTCAAC-CAAGGGCAAA
1 CTCAACGCAAGGACAAA
85562656 AGAGTGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.29, G:0.21, T:0.06
Consensus pattern (18 bp):
CTCAACGCAAGGACAAAG
Found at i:85563058 original size:68 final size:67
Alignment explanation
Indices: 85562974--85563243 Score: 262
Period size: 62 Copynumber: 3.9 Consensus size: 67
85562964 GTTTTATTTC
* *
85562974 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-TCAATTTT
**
85563039 TTG
65 TAA
* ** * * *
85563042 TATGTTCAACTCATATTGTGAGAGGTGAGTTGAGTCTCAGGACGCGCTGAGGTA--T---TTTTT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTTT
85563102 AA
66 AA
*
85563104 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAA--T-
85563169 TGTTGTCAA
62 T-TT-T-AA
* * * * *
85563178 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAATT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTCAATT
85563243 T
63 T
85563244 CCGTTTTTCA
Statistics
Matches: 166, Mismatches: 21, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
62 51 0.31
63 1 0.01
65 2 0.01
68 46 0.28
70 1 0.01
71 1 0.01
72 3 0.02
73 2 0.01
74 41 0.25
75 1 0.01
76 17 0.10
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (67 bp):
AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTTT
AA
Found at i:85563182 original size:74 final size:75
Alignment explanation
Indices: 85563102--85563953 Score: 495
Period size: 74 Copynumber: 10.9 Consensus size: 75
85563092 GGTATTTTTT
* *
85563102 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
85563166 TTCTGTTGTC
66 TTCTGTTGTC
* * *
85563176 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
* *
85563241 TTTCCGTTTTTC
65 TTTCTG-TTGTC
***** * * * * * * *
85563253 AATTTCTGCCTTTCAAAAAATCAACTCATAT-TGCGAGAGGTGAGTGGAGCCTCAGG-ACATGCT
1 AA-----AAAAATC---AACTC-A-T-AT-TGCGAGA--GGCGAGTTGAGCCTCAGGCACACGCC
85563316 GAGGTAATTTCAATTTCTGTTGTC
52 GAGGTAATTTCAATTTCTGTTGTC
*** * * * *
85563340 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCTGAGGTATTTTC
1 ---AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTC
* * *
85563404 AGTTTTTGTCTTTC
63 AATTTCTGT-TGTC
* * *
85563418 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
*
85563482 TTCTGTTTTC
66 TTCTGTTGTC
* * *** * ** *
85563492 --AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
* *
85563554 TTCTATTTTC
66 TTCTGTTGTC
* * * * * *
85563564 AAAAAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT
1 --AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--CACACGCCGAGGTAATTT
*
85563628 CAATTTCTGTCTTTC
62 CAATTTCTGT-TGTC
* * * * *
85563643 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTT
1 --AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCACACGCCGAGGTA-----
* * * *
85563708 TTTTCAATTTATATTTTTC
58 ATTTCAATTTCT-GTTGTC
* * * * *** * *
85563727 --AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCC-TCAGGCACACGCCGAGGTAATTTC--
* * *
85563790 AATCTGCTTTTCAAGTT
63 AAT-TTCTGTT---GTC
* * *
85563807 AAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATT
1 AA-----AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATT
85563871 TCAATTTCTGTTGTC
61 TCAATTTCTGTTGTC
* * *
85563886 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
85563951 TTT
65 TTT
85563954 TCGTTTTTCA
Statistics
Matches: 623, Mismatches: 99, Indels: 110
0.75 0.12 0.13
Matches are distributed among these distances:
72 62 0.10
73 1 0.00
74 83 0.13
75 67 0.11
76 77 0.12
77 50 0.08
78 30 0.05
79 64 0.10
80 48 0.08
81 4 0.01
82 11 0.02
83 3 0.00
84 15 0.02
85 19 0.03
86 3 0.00
87 41 0.07
88 27 0.04
89 1 0.00
90 17 0.03
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
TTCTGTTGTC
Found at i:85563453 original size:75 final size:74
Alignment explanation
Indices: 85563248--85563953 Score: 625
Period size: 75 Copynumber: 9.1 Consensus size: 74
85563238 CAATTTCCGT
* * *
85563248 TTTTCAATTTCTGCCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
85563312 TGCTGAGGTA
65 CGCTGAGGTA
* * **
85563322 ATTTCAATTTCTGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
85563387 CATGCTGAGGTA
63 CACGCTGAGGTA
* * **
85563399 TTTTCAGTTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
85563464 CGCTGAGGTA
65 CGCTGAGGTA
* * * **
85563474 ATTTCAATTTCTGTTTTC--AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
85563537 GTTGAGGTA
66 GCTGAGGTA
* * * *
85563546 TTTTCAATTTCTATTTTCAAAAAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTT
1 TTTTCAATTTCTGTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--
*
85563610 CACATGCTGAGGTA
62 -ACACGCTGAGGTA
*
85563624 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
1 TTTTCAATTTCTGT-TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-
* *
85563689 CACACACTGAGGTA
61 GACACGCTGAGGTA
* * * **
85563703 TTTTTTTTTCAATTTATATTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTG
1 -----TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* ** *
85563766 AGTCACATATCGAGGCA
60 AGACAC-GCT-GAGGTA
** *
85563783 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
1 TTTTCAATTTCTG-TTTTC-----AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
85563848 CCTCAGGACACGCTGAGGTA
55 CCTCAAGACACGCTGAGGTA
* * * * *
85563868 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--AC
85563933 ACG-TCGAGGTA
64 ACGCT-GAGGTA
85563944 TTTTCAATTT
1 TTTTCAATTT
85563954 TCGTTTTTCA
Statistics
Matches: 519, Mismatches: 73, Indels: 78
0.77 0.11 0.12
Matches are distributed among these distances:
72 63 0.12
73 3 0.01
74 54 0.10
75 78 0.15
76 54 0.10
77 62 0.12
78 30 0.06
79 58 0.11
80 40 0.08
84 19 0.04
85 16 0.03
86 1 0.00
87 41 0.08
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTA
Found at i:85563760 original size:80 final size:81
Alignment explanation
Indices: 85563647--85563853 Score: 226
Period size: 80 Copynumber: 2.5 Consensus size: 81
85563637 TCTTTCAAAA
* *
85563647 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA-CTGAGGTA-TTT-T-T
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAG-TCACACATC-GAGGCATTTTATCT
* *
85563708 -TTTTCAATTTATATTTTTC
64 CTTTTCAAGTTA-A-GTTTC
* *
85563727 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCAGTCACACATCGAGGCATTTT----A
85563792 TCTGCTTTTCAAGTTAAGTTTC
61 TCT-CTTTTCAAGTTAAGTTTC
*
85563814 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAG
85563854 GACACGCTGA
Statistics
Matches: 108, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
80 44 0.41
81 9 0.08
86 5 0.05
87 39 0.36
88 1 0.01
89 10 0.09
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (81 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGTCACACATCGAGGCATTTTATCTCT
TTTCAAGTTAAGTTTC
Found at i:85564090 original size:75 final size:76
Alignment explanation
Indices: 85563981--85564125 Score: 211
Period size: 75 Copynumber: 1.9 Consensus size: 76
85563971 GCCTTTCAAA
* * *
85563981 AAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTTCA
1 AAAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
85564045 ATTTCTGTTGT
66 ATTTCTGTTGT
* * * *
85564056 AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTC
85564121 AATTT
65 AATTT
85564126 TCGTTTTTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 41 0.67
77 20 0.33
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (76 bp):
AAAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
ATTTCTGTTGT
Found at i:85564262 original size:169 final size:168
Alignment explanation
Indices: 85563624--85564615 Score: 1029
Period size: 169 Copynumber: 5.9 Consensus size: 168
85563614 TGCTGAGGTA
* *
85563624 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* * * * * * * * *
85563689 CACACACTGAGGTATTTTTTTTTCAATTTATATTTTTC---AAAAATCAACTCATATTACGAGAG
64 GACACGCTGAGCTA-----ATTTCAATTTCT-GTTGTCAAAAAAAATCAACTCGTATTGCGAGAG
* * *** * ** *
85563751 GTGAGTTGAGCCT-TGAGTCACATATCGAGGCATTTTCAA-AATCTGC
123 GCGAGTTGAGCCTCAG-GTCACACGCCGAGGTATTTTCAATTTTC-GT
* ** *
85563797 TTTTCAAGTTAAG--TTTC----AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
85563856 CACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTG
66 CACGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTG
*
85563920 AGCCTCAGGTCACACGTCGAGGTATTTTCAATTTTCGT
131 AGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
*
85563958 TTTTCAAATTTCTGCCTTTCAAAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 TTTTC-AATTTCTGCCTTTC---AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * *
85564023 AGGACACGCTGAGTTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGCGGCGA
62 AGGACACGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGA
85564088 GTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
127 GTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
*
85564130 TTTTCAAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG
1 TTTTC-AATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
85564194 ACACACTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGT
65 ACACGCTGAGCTAATTTCAATTTCTGTTGTC-AAAAAAAATCAACTCGTATTGCGAGAGGCGAGT
85564259 TGAGCCTCAGGTCACACGCCGAGG-----T--A-------
129 TGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
* * * *
85564285 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGACTTAAGCCT-TGG
1 TTTTCAATTTCTGCCTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * * * *
85564349 CTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTG
65 ---ACACGCTGAGCTAATTTCAATTTCTGT-TGTCAAAAAAAATCAACTCGTATTGCGAGAGGCG
* *
85564414 AGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGT
126 AGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
* * *
85564457 TTTTCAATTTCTGCCTTTC-AAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * * * *
85564520 TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGA
65 --ACACGCTGAGCTAATTTCAATTTCTGT-TGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGA
* * * *
85564584 GTTGAGCTTCAGATCACACACTGAGGTATTTT
127 GTTGAGCCTCAGGTCACACGCCGAGGTATTTT
85564616 TTTTTTCAAT
Statistics
Matches: 728, Mismatches: 55, Indels: 76
0.85 0.06 0.09
Matches are distributed among these distances:
154 14 0.02
155 7 0.01
156 36 0.05
158 76 0.10
159 7 0.01
160 10 0.01
161 60 0.08
162 9 0.01
163 1 0.00
164 5 0.01
165 13 0.02
167 38 0.05
168 70 0.10
169 116 0.16
170 75 0.10
171 72 0.10
172 109 0.15
173 10 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (168 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTG
AGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
Found at i:85564308 original size:78 final size:79
Alignment explanation
Indices: 85564130--85564838 Score: 536
Period size: 78 Copynumber: 8.8 Consensus size: 79
85564120 CAATTTTCGT
*
85564130 TTTTCAAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG
1 TTTTC-AATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
85564194 --ACACACTGAGGTA
65 TCACACGCCGAGGTA
* * * *
85564207 ATTTCAATTTCTG--TTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGG
1 TTTTCAATTTCTGCCTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
85564270 TCACACGCCGAGGTA
65 TCACACGCCGAGGTA
* * * *
85564285 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGACTTAAGCCT-TGG
1 TTTTCAATTTCTGCCTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
85564349 CTCACGCGCTGAGCTA
65 -TCACACGCCGAGGTA
* *
85564365 TTTTCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
85564429 CACACGCCGAGGTA
66 CACACGCCGAGGTA
* ** * *
85564443 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAGGTGAG
1 TTTTCAATTTCTGCCTTTCAA------------AA-AAAAATCAACTCATATTGCGAGAGGTGAG
* * * *
85564508 TTGAGCCT-TGGCTCACGCGCTGAGCTA
53 TTGAGCCTCAGG-TCACACGCCGAGGTA
* * *
85564535 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* *
85564598 CACACACTGAGGTA
66 CACACGCCGAGGTA
* *** *
85564612 TTTTTTTTTTCAATTTATATTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCC
1 ------TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *** *
85564673 T-TGAGTCACATATCGAGGCA
60 TCAG-GTCACACGCCGAGGTA
** * *
85564693 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGCCTTTCAA---AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* **
85564758 CCTCAAG--ACACGTTGAGGTA
58 CCTCAGGTCACACGCCGAGGTA
* * * *
85564778 TTTTCAATTTCTGTCTTTC-AAAAAAAATCAGCCCATATTGCGAGAGGTGAGTTGAACCTCA
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
85564839 AGACGCTGAG
Statistics
Matches: 509, Mismatches: 78, Indels: 91
0.75 0.12 0.13
Matches are distributed among these distances:
74 2 0.00
75 16 0.03
76 83 0.16
77 50 0.10
78 92 0.18
79 6 0.01
80 68 0.13
81 48 0.09
83 16 0.03
84 1 0.00
85 24 0.05
87 36 0.07
91 3 0.01
92 64 0.13
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (79 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
CACACGCCGAGGTA
Found at i:85564417 original size:158 final size:158
Alignment explanation
Indices: 85564130--85564832 Score: 602
Period size: 158 Copynumber: 4.4 Consensus size: 158
85564120 CAATTTTCGT
* * *
85564130 TTTTCAAATTTCTGCCTTTC--AAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAG
1 TTTTC-AATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TG
* * * * * * *
85564193 G---ACACACTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAAAATCAACTCGTATTGCGAGCGG
64 GCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGG
* *
85564254 CGAGTTGAGCCTCAGGTCACACGCCGAGGTA
128 TGAGTTGAGCCTCAGATCACACGCCGAGGTA
* *
85564285 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGACTTAAGCCTTGGC
1 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
85564350 TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGA
66 TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGA
85564415 GTTGAGCCTCAGATCACACGCCGAGGTA
131 GTTGAGCCTCAGATCACACGCCGAGGTA
* ** *
85564443 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAGGTGAG
1 TTTTCAATTTCTGCCTTTCAA------------AAAAAAAATCGACTCATATTGCGAGAGGTGAG
85564508 TTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATAT
54 TTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATAT
* * *
85564572 TGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTA
119 TGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTA
* *** * *
85564612 TTTTTTTTTTCAATTTATATTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGC
1 ------TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGC
*** **
85564672 CTTGAG-TCAC-ATATCGAGGC-ATTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAATCAA
60 CTTG-GCTCACGCGCT-GA-GCTATTTTCAATTTCTGTC-TTTC-A---AA-----AAAAATCAA
* * **
85564733 CTCATATTGTGAGAGGTGAGTTGAGCCTCA-A-GACACGTTGAGGTA
112 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTA
* *
85564778 TTTTCAATTTCTGTCTTTC--AAAAAAAATC-AGCCCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGA-CTCATATTGCGAGAGGTGAGTTGA
85564833 ACCTCAAGAC
Statistics
Matches: 462, Mismatches: 44, Indels: 76
0.79 0.08 0.13
Matches are distributed among these distances:
154 14 0.03
155 7 0.02
156 36 0.08
157 2 0.00
158 154 0.33
159 6 0.01
160 16 0.03
162 1 0.00
163 31 0.07
166 11 0.02
167 1 0.00
168 37 0.08
169 55 0.12
170 75 0.16
175 16 0.03
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (158 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGA
GTTGAGCCTCAGATCACACGCCGAGGTA
Found at i:85564446 original size:327 final size:322
Alignment explanation
Indices: 85563517--85564615 Score: 1168
Period size: 327 Copynumber: 3.3 Consensus size: 322
85563507 TTGCGAGAAA
* * * * * * *
85563517 TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATTTTCAAAAAAAAATTAACTTAT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC--AAAAAAATCAACTCAT
* * * *
85563582 ATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTC-AA
64 ATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTCTGCCTTTCAAA
* * *
85563645 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
128 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GGTCACACGCTGAGCTA-----T
* * * *
85563709 TTTCAATTTATATTTTTC---AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-TGAGTC
186 TTTCAATTTCT-GTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-TC
*** * ** * * **
85563770 ACATATCGAGGCATTTTCAA-AATCTGCTTTTCAAGTTAAG--TTTC---AAAAATCAACTCATA
249 ACACGCCGAGGTATTTTCAATTTTC-GTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATA
*
85563829 TTACGAGAGG
313 TTACGAAAGG
*
85563839 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTAT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATAT
*
85563904 TGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATTTTCGTTTTTCAAATTT
66 TGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG-----T--A-------TTTTC-AATTT
* *
85563969 CTGCCTTTCAAAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG--ACACGC
116 CTGCCTTTC--AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGC
* * * * * * *
85564032 TGAGTTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCT
178 TGAGCTATTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
85564097 CAGGTCACACGCCGAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAATCAA
243 CAGATCACACGCCGAGGTATTTTCAATTTTCGTTTTTC-AATTTCTGCCTTTCAAAAAAAATCAA
*
85564162 CTCATATTGCGAAAGG
307 CTCATATTACGAAAGG
* *
85564178 TGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAATCAACTCGT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC--AAAAAAATCAACTCAT
*
85564243 ATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGCCTTTCAAAA
64 ATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGCCTTTCAAAA
* * * *
85564308 AAAAAATCGACTCATATTGCGAGAGGTGACTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
129 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTGAGCTATTTTCAAT
85564373 TTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCG
193 TTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCG
* * *
85564438 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAG
257 AGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAAAG
85564503 G
322 G
* * * * *
85564504 TGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTC
1 TGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTC
* * * * *
85564568 ATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTT
62 ATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTT
85564616 TTTTTTCAAT
Statistics
Matches: 660, Mismatches: 75, Indels: 79
0.81 0.09 0.10
Matches are distributed among these distances:
320 46 0.07
321 2 0.00
322 42 0.06
323 2 0.00
324 38 0.06
325 3 0.00
326 89 0.13
327 136 0.21
328 23 0.03
329 3 0.00
330 3 0.00
331 10 0.02
333 57 0.09
334 14 0.02
335 13 0.02
336 16 0.02
338 38 0.06
339 71 0.11
341 54 0.08
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (322 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATAT
TGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGCCTTTCAAAAAA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTGAGCTATTTTCAATTTC
TGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGT
ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAAAGG
Found at i:85564537 original size:92 final size:92
Alignment explanation
Indices: 85564365--85564555 Score: 283
Period size: 92 Copynumber: 2.1 Consensus size: 92
85564355 CGCTGAGCTA
* *
85564365 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATC
*
85564430 ACACGCCGAGGTATTTTCAATTTCCGT
66 ACACGCCGAGCTATTTTCAATTTCCGT
* ** *
85564457 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATC
* * *
85564522 ACGCGCTGAGCTATTTTCAATTTCTGT
66 ACACGCCGAGCTATTTTCAATTTCCGT
*
85564549 CTTTCAA
1 TTTTCAA
85564556 AAAAATCAAC
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (92 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATC
ACACGCCGAGCTATTTTCAATTTCCGT
Found at i:85564585 original size:77 final size:78
Alignment explanation
Indices: 85564457--85564832 Score: 272
Period size: 77 Copynumber: 4.7 Consensus size: 78
85564447 CAATTTCCGT
* * *
85564457 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
*
85564522 ACGCGCTGAGCTA
66 ACACGCTGAGCTA
* *
85564535 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGAT
1 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCT
* *
85564598 CACACACTGAGGTA
65 CACACGCTGAGCTA
* * * *
85564612 TTTTTTTTTTCAATTTATATTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 ------TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
**
85564674 TGAG-TCACA-TATCGAGGC-A
60 TG-GCTCACACGCT-GA-GCTA
** *
85564693 TTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTC-TTTC-A---AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * *
85564757 GCC-T--CAAGACACGTTGAGGTA
56 GCCTTGGC-TCACACGCTGAGCTA
* *
85564778 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCCCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
85564833 ACCTCAAGAC
Statistics
Matches: 236, Mismatches: 33, Indels: 60
0.72 0.10 0.18
Matches are distributed among these distances:
75 13 0.06
76 33 0.14
77 47 0.20
78 18 0.08
80 1 0.00
81 43 0.18
82 5 0.02
83 16 0.07
84 2 0.01
85 21 0.09
86 3 0.01
87 34 0.14
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (78 bp):
TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
ACACGCTGAGCTA
Found at i:85564649 original size:250 final size:249
Alignment explanation
Indices: 85564208--85565316 Score: 816
Period size: 250 Copynumber: 4.3 Consensus size: 249
85564198 ACTGAGGTAA
* * * *
85564208 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGG-TC
1 TTTCAATTT-TGTT-TC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
* * *
85564272 ACACGCCGAGGTATTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGA
62 ACACGCTGAGGTATTTTCAATTTCTGTCTTTC--AAAAAAAATCAACTCATATTGCGAGAGGTGA
* * ** * * * * *
85564337 CTTAAGCCTTGGCTCACGCGCTGAGCTA------TTTTCAATTTCTGTCTTTCAAAAAAAATCAA
125 GTTGAGCCTCAGATCACACGCTGAGGTATTTTTTTTTTCAATTTATGTTTTTC--AAAAAATCAA
* * ** *
85564396 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-TCACACGCCGAGGTATTTTCAATTTCCGTT
188 CTCATATTGCGAGAGGTGAGTTGAGCCT-TGACTCACACACCGAGGTATTTTCAAAATCTGTT
* *
85564458 TTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTCAATTT-TG--TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* *
85564523 CGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
63 CACGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
85564587 GAGCTTCAGATCACACACTGAGGTATTTTTTTTTTCAATTTATATTTTTC-AAAAATCAACTCAT
128 GAGCCTCAGATCACACGCTGAGGTATTTTTTTTTTCAATTTATGTTTTTCAAAAAATCAACTCAT
* * * * * *
85564651 ATTGCGAGAGGTGAGTTAAGCCTTGAGTCACATATCGAGGCATTTTCAAAATCTGCT
193 ATTGCGAGAGGTGAGTTGAGCCTTGACTCACACACCGAGGTATTTTCAAAATCTGTT
** * **
85564708 TTTCAAGTTAAGTTTC---AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC-T--CAAGAC
1 TTTCAA-TTTTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCAC
* * *
85564767 ACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCCCATATTGCGAGAGGTGAGTTG
64 ACGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * * *
85564832 AACCTC--A--AGACGCTGAGGTGTTTTCCATTTCTGTTCTTCAACTTCTGTGTTTCAAAAAAAT
129 AGCCTCAGATCACACGCTGA-G-GTATT---TTT-T-TT-TTCAATTTATGTTTTTC-AAAAAAT
* * * * * *
85564893 CAGCTCATATTGCGAGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTT
185 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACACACCGAGGTATTTTCAAAATCTGTT
* * *
85564958 TTTCAAATTTTGTTTTTCCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGG--
1 TTTC-AATTTTG--TTT-CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
* * * * *
85565021 -ACACGCTAAGGTATTTTCAATTTTTTTTTTTAATTTATGTTTGTCAAAAAAATCAACTCATATT
61 CACACGCTGAGGTATTTTCAA--TTTCTGTCT--TTCA--------AAAAAAATCAACTCATATT
* ** *
85565085 GTGAGAGGTGAGTTGAGCCTCAGGCCACACGCCGAGGTATTTTCAATTGATGTTTTTTCTTTAAT
114 GCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA---T---TT--T-TTTTTTC---AAT
* * * ** * *
85565150 TTATGCTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACATATCGA
167 TTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GACTCACACACCGA
*
85565213 GGTATTTTCATAATCTGTT
231 GGTATTTTCAAAATCTGTT
* * * *
85565232 TTACAAATTTTGTTT---TAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTC-AATTTTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
* *
85565294 TGCTGAGCTATTTTCAATTTCTG
65 CGCTGAGGTATTTTCAATTTCTG
85565317 GTTTTAATGT
Statistics
Matches: 678, Mismatches: 115, Indels: 114
0.75 0.13 0.13
Matches are distributed among these distances:
240 7 0.01
241 1 0.00
242 6 0.01
243 29 0.04
244 37 0.05
245 36 0.05
246 1 0.00
247 50 0.07
248 17 0.03
249 4 0.01
250 208 0.31
251 6 0.01
252 5 0.01
253 17 0.03
256 51 0.08
258 6 0.01
260 3 0.00
267 2 0.00
268 74 0.11
270 18 0.03
271 1 0.00
272 10 0.01
273 8 0.01
274 68 0.10
275 2 0.00
276 11 0.02
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (249 bp):
TTTCAATTTTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACAC
GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGATCACACGCTGAGGTATTTTTTTTTTCAATTTATGTTTTTCAAAAAATCAACTCATATT
GCGAGAGGTGAGTTGAGCCTTGACTCACACACCGAGGTATTTTCAAAATCTGTT
Found at i:85564664 original size:81 final size:81
Alignment explanation
Indices: 85564556--85564758 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 81
85564546 TGTCTTTCAA
*
85564556 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA-CTGAGGTATTTT-T-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-TCACACATC-GAGGCATTTTATCT
* *
85564618 -TTTTCAATTTATATTTTTC
64 CTTTTCAAGTTA-A-GTTTC
* * *
85564637 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGAGTCACATATCGAGGCATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGTCACACATCGAGGCATTTT----A
85564702 TCTGCTTTTCAAGTTAAGTTTC
61 TCT-CTTTTCAAGTTAAGTTTC
*
85564724 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
85564759 CTCAAGACAC
Statistics
Matches: 104, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
81 48 0.46
82 6 0.06
86 2 0.02
87 37 0.36
88 1 0.01
89 10 0.10
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGTCACACATCGAGGCATTTTATCTCT
TTTCAAGTTAAGTTTC
Found at i:85564872 original size:74 final size:75
Alignment explanation
Indices: 85564724--85564865 Score: 205
Period size: 76 Copynumber: 1.9 Consensus size: 75
85564714 GTTAAGTTTC
* * * *
85564724 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACCCATATTGCGAGAGGTGAGTTGAACCTCAAGA-ACGCTGAGGTATTTTCAATTTC
85564789 TGTCTTTCAAA
65 TGTCTTTCAAA
* * *
85564800 AAAAATCAGCCCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGAGGTGTTTTCCATTTCT
1 AAAAATCAACCCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
85564864 GT
66 GT
85564866 TCTTCAACTT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 22 0.37
76 37 0.63
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (75 bp):
AAAAATCAACCCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
GTCTTTCAAA
Found at i:85564979 original size:15 final size:14
Alignment explanation
Indices: 85564943--85564975 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
85564933 CGCTGAGGTA
85564943 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
85564957 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
85564971 TTTTC
1 TTTTC
85564976 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:85565099 original size:181 final size:179
Alignment explanation
Indices: 85564778--85565130 Score: 426
Period size: 181 Copynumber: 2.0 Consensus size: 179
85564768 CGTTGAGGTA
* * * *
85564778 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCCCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACCCATATTGCAAGAGGTGAGTTCAACCTCAACAC
* * * * *
85564843 GCTGAGGTGTTTTCCATTTCTGTTCTTCAACTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGA
66 GCTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTTTCAAAAAAATCAACTCATATTGCGA
* * *
85564908 GTGATGAGTTGAGCCT-TGACTCACACGCTGAGGTATTTTCAAATTCTGT
131 GAGATGAGTTGAGCCTCAGAC-CACACGCCGAGGTATTTTCAAATTCTGT
* * *
85564957 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGG
1 TTTTC-AATTTCTGTCTTT-CAAAAAAAATCAACCCATATTGCAAGAGGTGAGTTCAACCTCA--
* * * *
85565021 ACACGCTAAGGTATTTTCAATTT-TTTTTTTTAATTTATGT-TTGTCAAAAAAATCAACTCATAT
62 ACACGCTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTT-TCAAAAAAATCAACTCATAT
* * *
85565084 TGTGAGAGGTGAGTTGAGCCTCAGGCCACACGCCGAGGTATTTTCAA
126 TGCGAGAGATGAGTTGAGCCTCAGACCACACGCCGAGGTATTTTCAA
85565131 TTGATGTTTT
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
179 11 0.08
180 45 0.31
181 69 0.47
182 21 0.14
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (179 bp):
TTTTCAATTTCTGTCTTTCAAAAAAAATCAACCCATATTGCAAGAGGTGAGTTCAACCTCAACAC
GCTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTTTCAAAAAAATCAACTCATATTGCGA
GAGATGAGTTGAGCCTCAGACCACACGCCGAGGTATTTTCAAATTCTGT
Found at i:85565167 original size:181 final size:178
Alignment explanation
Indices: 85564778--85565191 Score: 419
Period size: 181 Copynumber: 2.3 Consensus size: 178
85564768 CGTTGAGGTA
* * * * *
85564778 TTTTC-AATTTCTGTCTTTCAAAAAAAATCAGCCCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TTTTCAAATTT-TGTCTTTC-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACA
* * * * *
85564842 CGCTGAGGTGTTTTCCATTTCTGTTCTTCAACTTCTGTGTTTCAAAAAAATCAGCTCATATTGCG
64 CGCTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTTTCAAAAAAATCAACTCATATTGCG
* * * *
85564907 AGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGT
129 AGAGATGAGTTGAGCCTAGACTCACACGCCGAGGTATTTTCAAATTATGT
* * *
85564957 TTTTCAAATTTTGTTTTTCCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGGA
1 TTTTCAAATTTTGTCTTTCC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCA--A
* * * *
85565022 CACGCTAAGGTATTTTCAATTT-TTTTTTTTAATTTATGT-TTGTCAAAAAAATCAACTCATATT
62 CACGCTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTT-TCAAAAAAATCAACTCATATT
* * *
85565085 GTGAGAGGTGAGTTGAGCCTCAGGC-CACACGCCGAGGTATTTTC-AATTGATGTT
126 GCGAGAGATGAGTTGAGCCT-AGACTCACACGCCGAGGTATTTTCAAATT-ATG-T
* * *
85565139 TTTTCTTTAATTTATG-CTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTT
1 TTTTC--AAATTT-TGTCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
85565192 GAGCTTCGGG
Statistics
Matches: 194, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
179 12 0.06
180 46 0.24
181 98 0.51
182 27 0.14
184 9 0.05
185 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (178 bp):
TTTTCAAATTTTGTCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACACG
CTAAGGTATTTTCAATTTCTGTTCTTCAACTTATGTGTTTCAAAAAAATCAACTCATATTGCGAG
AGATGAGTTGAGCCTAGACTCACACGCCGAGGTATTTTCAAATTATGT
Found at i:85565184 original size:93 final size:88
Alignment explanation
Indices: 85564800--85565284 Score: 318
Period size: 93 Copynumber: 5.4 Consensus size: 88
85564790 GTCTTTCAAA
* * * * * * *
85564800 AAAAATCAGCCCATATTGCGAGAGGTGAGTTGAACCTCA---AGACGCTGAGGTGTTTTCCAT-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCAATAT
* * * *
85564861 TCTGTTCTTCAACTTCTGTGTTT-C
66 TTTTTTCTTTAA-TT-TATGTTTGC
* * * * ** *
85564885 AAAAAAATCAGCTCATATTGCGAGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGCACACGCCGAGGTATTTTCAA
** *
85564950 -ATTCTGTTTT-TCAAATTT-TGTTTTTCC
63 TATT-T-TTTTCTTTAATTTATG--TTTGC
* * **
85564977 AAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGG-ACACGCTAAGGTATTTTCAA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCAA
85565041 T-TTTTTTT-TTTAATTTATGTTTGTC
63 TATTTTTTTCTTTAATTTATGTTTG-C
*
85565066 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGCCACACGCCGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCCGAGGTATTTTCAA
85565131 TTGATGTTTTTTCTTTAATTTATGCTTTGC
63 -T-AT-TTTTTTCTTTAATTTATG-TTTGC
* * * ***
85565161 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGTCACATATCGAGGTATTTTC-ATA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCCGAGGTATTTTCAAT-
* * *
85565225 ATCTGTTTTAC--AAATTT-TGTTT-T
64 AT-T-TTTTTCTTTAATTTATGTTTGC
*
85565248 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
85565285 TGGCTCACGT
Statistics
Matches: 330, Mismatches: 45, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
87 66 0.20
88 48 0.15
89 15 0.05
90 27 0.08
91 50 0.15
92 12 0.04
93 90 0.27
94 6 0.02
95 12 0.04
96 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCAATAT
TTTTTTCTTTAATTTATGTTTGC
Found at i:85565334 original size:87 final size:87
Alignment explanation
Indices: 85565161--85565371 Score: 205
Period size: 87 Copynumber: 2.4 Consensus size: 87
85565151 TATGCTTTGC
* * * *
85565161 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGTCACATATCGAGGTATTTTCATAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCGGCTCACATATCGAGCTATTTTCATAA
* *
85565226 TCTGTTTTACAAATTTTGTTTT
66 TCTGTTTTACAAATCTAGTTTT
* *
85565248 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGCTCACGT-GCTGAGCTATTTTCA-
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTTCGGCTCACATATC-GAGCTATTTTCAT
* **
85565310 ATTTCTGGTTTTA-ATGTCTAGTTTT
64 A-ATCT-GTTTTACAAATCTAGTTTT
* * * * *
85565335 AAAGAGTCAATTCATATTGTGAGAAATGAGTTAAGCT
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCT
85565372 CAGGATCACA
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
86 2 0.02
87 66 0.64
88 35 0.34
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCGGCTCACATATCGAGCTATTTTCATAA
TCTGTTTTACAAATCTAGTTTT
Found at i:85565462 original size:21 final size:21
Alignment explanation
Indices: 85565436--85565480 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
85565426 TTTATATCCC
85565436 TGAAGTTACAGTGAAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
* * *
85565457 TGAAGTTGCAGTGGAGCTGAT
1 TGAAGTTACAGTGAAGCTAAT
85565478 TGA
1 TGA
85565481 GGATATTAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (21 bp):
TGAAGTTACAGTGAAGCTAAT
Found at i:85566339 original size:13 final size:13
Alignment explanation
Indices: 85566321--85566364 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
85566311 TTCTTTCGAA
85566321 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
85566334 TCTTTTTTTTGTGT
1 TCTTTTTTTTCT-T
*
85566348 T-GTTTTTTTCTT
1 TCTTTTTTTTCTT
85566360 TCTTT
1 TCTTT
85566365 ATATATACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:85566595 original size:2 final size:2
Alignment explanation
Indices: 85566590--85566624 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
85566580 TCTTAAATAC
*
85566590 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85566625 TTTTTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:85566702 original size:15 final size:15
Alignment explanation
Indices: 85566653--85566704 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
85566643 ATTGTGTATA
*
85566653 TATTATTATTACAA-
1 TATTATTATTATAAC
**
85566667 -ATTATTATTATTGC
1 TATTATTATTATAAC
*
85566681 TAGTATTATTATAAC
1 TATTATTATTATAAC
85566696 TATTATTAT
1 TATTATTAT
85566705 ATTAGTGTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 10 0.34
15 19 0.66
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.54
Consensus pattern (15 bp):
TATTATTATTATAAC
Found at i:85566857 original size:37 final size:37
Alignment explanation
Indices: 85566816--85566917 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
85566806 CTAATATTTT
85566816 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
85566853 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
85566896 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
85566918 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:85567963 original size:48 final size:48
Alignment explanation
Indices: 85567881--85568355 Score: 563
Period size: 48 Copynumber: 9.9 Consensus size: 48
85567871 ATACTAGGGT
* *
85567881 TATGTGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * *
85567929 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGACATCGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * *
85567977 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * ** ** *
85568025 TATGTGAGCCAGTGTAAGACCATATTTGGAACATAACATCAACATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * * * * * *
85568073 GAGGAGAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGTCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * *
85568121 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * * *
85568169 TATGAGAGCTAGTGTAAGACTATGTTTGGGACATGGCATCAGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * *
85568217 TATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * *
85568265 TACGTGAGCTAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTTTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * *
85568313 CATGTGGGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
85568356 ATCTTACCCT
Statistics
Matches: 351, Mismatches: 76, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 351 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
Found at i:85568050 original size:96 final size:96
Alignment explanation
Indices: 85567881--85568357 Score: 675
Period size: 96 Copynumber: 5.0 Consensus size: 96
85567871 ATACTAGGGT
* * *
85567881 TATGTGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
* *
85567946 GACCATATTTGGAACATGACATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* *
85567977 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
* ** **
85568042 GACCATATTTGGAACATAACATCAACATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
85568073 GAGGAGAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGTCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
85568138 GACCATGTTTGGAACATGGCATTGGCATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * *
85568169 TATGAGAGCTAGTGTAAGACTATGTTTGGGACATGGCATCAGCCTCGATATGTAAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
85568234 GACCATGTTTGGAACATGGCATCAGCATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * * ** * * *
85568265 TACGTGAGCTAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTTTACATGTGGGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
85568330 GACCATGTTTGGGACATGGCATCGGCAT
66 GACCATGTTTGGAACATGGCATCGGCAT
85568358 CTTACCCTTT
Statistics
Matches: 339, Mismatches: 42, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 339 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:85575641 original size:71 final size:71
Alignment explanation
Indices: 85575552--85575718 Score: 316
Period size: 71 Copynumber: 2.4 Consensus size: 71
85575542 GAGATGTATC
85575552 CCATGTAGACAAGAGAGCTACGAGAAAGATAAATGTAGCTAGGTCGCATGCGTGATCCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGAGAAAGATAAATGTAGCTAGGTCGCATGCGTGATCCCAAGTGA
85575617 AGGACA
66 AGGACA
* *
85575623 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGAGAAAGATAAATGTAGCTAGGTCGCATGCGTGATCCCAAGTGA
85575688 AGGACA
66 AGGACA
85575694 CCATGTAGACAAGAGAGCTACGAGA
1 CCATGTAGACAAGAGAGCTACGAGA
85575719 CAAATCGGTT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGAGAAAGATAAATGTAGCTAGGTCGCATGCGTGATCCCAAGTGA
AGGACA
Found at i:85578638 original size:43 final size:43
Alignment explanation
Indices: 85578468--85578639 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
85578458 ACATAGGATC
* * *
85578468 CGATATGTGTTTTCATGTAAGACCACGTCTAGGACGTTGACAT
1 CGATATTTGATTTCATGTAAGACCACGTCTAGGACGTTGGCAT
* * * * * *
85578511 TGACT-TATGATTTACGTGTAAGACCATGTCTAGGACATCGGCAT
1 CGA-TATTTGATTT-CATGTAAGACCACGTCTAGGACGTTGGCAT
* *
85578555 CG-TATTTGATTTCGTGTATGACC-CTGTCTAGGACAG-TGGCAT
1 CGATATTTGATTTCATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
* *
85578597 CGATATTTGATTTCATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTAGGACGTTGGCAT
85578640 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
42 28 0.27
43 47 0.46
44 28 0.27
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:85578847 original size:21 final size:20
Alignment explanation
Indices: 85578823--85578878 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
85578813 AGTATAAGAA
*
85578823 AATATGCTATATGTGCAAATG
1 AATATGCAATATGTG-AAATG
* *
85578844 AATAGGGAATATGTGAAATG
1 AATATGCAATATGTGAAATG
*
85578864 CATATG-AACTATGTG
1 AATATGCAA-TATGTG
85578879 GTTTGTGATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 2 0.07
20 15 0.52
21 12 0.41
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (20 bp):
AATATGCAATATGTGAAATG
Found at i:85580433 original size:44 final size:44
Alignment explanation
Indices: 85580367--85580453 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
85580357 TTCACAGAAT
*
85580367 AATTTCTTCTAAGCATTTTTTAGAATAGATGACCTTATAACGTC
1 AATTTCTTCTAAGCATTATTTAGAATAGATGACCTTATAACGTC
85580411 AATTTCTTCTAAGCATTATTTAGAATAGATGACCTTATAACGT
1 AATTTCTTCTAAGCATTATTTAGAATAGATGACCTTATAACGT
85580454 TCCAACATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.40
Consensus pattern (44 bp):
AATTTCTTCTAAGCATTATTTAGAATAGATGACCTTATAACGTC
Found at i:85587635 original size:17 final size:17
Alignment explanation
Indices: 85587613--85587646 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85587603 TATTTATAGG
85587613 ATCACCGTTGGAAACTA
1 ATCACCGTTGGAAACTA
85587630 ATCACCGTTGGAAACTA
1 ATCACCGTTGGAAACTA
85587647 CGTGTACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (17 bp):
ATCACCGTTGGAAACTA
Done.