Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 286 of 378
Found at i:86240202 original size:50 final size:50
Alignment explanation
Indices: 86240132--86240226 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
86240122 AGCGAGCCAA
* * * *
86240132 TATCAGGAAGCTCCGGAGAG-CTATTAATTGGGAAGCTCATAAGAGTCAGT
1 TATCAGGAAGCTCCGAAGAGCCAATT-ATCGAGAAGCTCATAAGAGTCAGT
* *
86240182 TATCGGGAAGCTCTGAAGAGCCAATTATCGAGAAGCTCATAAGAG
1 TATCAGGAAGCTCCGAAGAGCCAATTATCGAGAAGCTCATAAGAG
86240227 CCATAACGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 34 0.89
51 4 0.11
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (50 bp):
TATCAGGAAGCTCCGAAGAGCCAATTATCGAGAAGCTCATAAGAGTCAGT
Found at i:86240228 original size:25 final size:25
Alignment explanation
Indices: 86240163--86240229 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
86240153 TATTAATTGG
* * *
86240163 GAAGCTCATAAGAGTCAGTTATCGG
1 GAAGCTCATAAGAGCCAATTATCGA
86240188 GAAGCTC-TGAAGAGCCAATTATCGA
1 GAAGCTCAT-AAGAGCCAATTATCGA
86240213 GAAGCTCATAAGAGCCA
1 GAAGCTCATAAGAGCCA
86240230 TAACGGAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (25 bp):
GAAGCTCATAAGAGCCAATTATCGA
Found at i:86240749 original size:21 final size:21
Alignment explanation
Indices: 86240723--86240773 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
86240713 TATGCGAATG
*
86240723 AATTTA-ATATCAATTTAATAC
1 AATTTACAT-TCAATTCAATAC
*
86240744 AATTTACATTCAATTCAATCC
1 AATTTACATTCAATTCAATAC
*
86240765 AATTCACAT
1 AATTTACAT
86240774 ATTAGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTTACATTCAATTCAATAC
Found at i:86249893 original size:20 final size:20
Alignment explanation
Indices: 86249870--86249907 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
86249860 CCGTATCTTT
*
86249870 GCCCGTGTGCCCAATTCTAA
1 GCCCATGTGCCCAATTCTAA
86249890 GCCCATGTGCCCAATTCT
1 GCCCATGTGCCCAATTCT
86249908 GAGTATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.37, G:0.18, T:0.26
Consensus pattern (20 bp):
GCCCATGTGCCCAATTCTAA
Found at i:86255198 original size:40 final size:40
Alignment explanation
Indices: 86255090--86255299 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86255080 CGGGATTTAA
* * * * *
86255090 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86255130 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86255170 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86255210 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86255250 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86255290 CCGGATATAT
1 CCGGATATAT
86255300 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86263268 original size:40 final size:40
Alignment explanation
Indices: 86263224--86263433 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86263214 TCGGATTTAA
* * * * *
86263224 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86263264 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86263304 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86263344 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86263384 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86263424 CCGGATATAT
1 CCGGATATAT
86263434 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86271466 original size:40 final size:40
Alignment explanation
Indices: 86271358--86271567 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86271348 CGGGATTTAA
* * * * *
86271358 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86271398 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86271438 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86271478 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86271518 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86271558 CCGGATATAT
1 CCGGATATAT
86271568 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86273653 original size:2 final size:2
Alignment explanation
Indices: 86273648--86273683 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
86273638 TCACACACAC
*
86273648 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86273684 TATGCATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:86283374 original size:40 final size:40
Alignment explanation
Indices: 86283329--86283495 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
86283319 CGGAATATAA
*
86283329 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
86283369 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86283409 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
86283449 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86283488 CCGGATAT
1 CCGGATAT
86283496 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86287450 original size:2 final size:2
Alignment explanation
Indices: 86287440--86287469 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
86287430 AATATCACAC
*
86287440 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86287470 CATAACAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86289792 original size:31 final size:33
Alignment explanation
Indices: 86289732--86289793 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
86289722 CTATTTTTTT
*
86289732 ATATCTATAAACACATAAATATAAGTAAAAACA
1 ATATCTATAAACACATAAAAATAAGTAAAAACA
86289765 ATAT-TATAAA-ACATAAAAAATAA-TAAAAA
1 ATATCTATAAACACAT-AAAAATAAGTAAAAA
86289794 TAAAAAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 10 0.37
32 13 0.48
33 4 0.15
ACGTcount: A:0.66, C:0.08, G:0.02, T:0.24
Consensus pattern (33 bp):
ATATCTATAAACACATAAAAATAAGTAAAAACA
Found at i:86290420 original size:3 final size:3
Alignment explanation
Indices: 86290412--86290461 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
86290402 TACATTCCAA
86290412 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
86290460 TA
1 TA
86290462 GTAAATGTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:86290643 original size:18 final size:18
Alignment explanation
Indices: 86290591--86290644 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
86290581 ATTATGTATA
*
86290591 TATATATTTT--TAGTAT
1 TATATATTTTAATACTAT
*
86290607 TATGT-TTTTATATACTAT
1 TATATATTTTA-ATACTAT
*
86290625 TATATATTTTAATATTAT
1 TATATATTTTAATACTAT
86290643 TA
1 TA
86290645 GTTATATACC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 4 0.13
16 4 0.13
18 17 0.57
19 5 0.17
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (18 bp):
TATATATTTTAATACTAT
Found at i:86290661 original size:33 final size:33
Alignment explanation
Indices: 86290576--86290653 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 33
86290566 ATTGCTTTTA
* *
86290576 TATGTA-TTATGTA-TA-TATATATTTTTAGTAT
1 TATGTAGTTATATACTATTATATA-TTTTAATAT
**
86290607 TATGTTTTTATATACTATTATATATTTTAATAT
1 TATGTAGTTATATACTATTATATATTTTAATAT
86290640 TAT-TAGTTATATAC
1 TATGTAGTTATATAC
86290654 CTTTTATACT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
31 5 0.13
32 15 0.38
33 13 0.33
34 6 0.15
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (33 bp):
TATGTAGTTATATACTATTATATATTTTAATAT
Found at i:86291536 original size:16 final size:14
Alignment explanation
Indices: 86291499--86291565 Score: 59
Period size: 16 Copynumber: 4.7 Consensus size: 14
86291489 ATTTGTATAT
*
86291499 TTATATATATATTC
1 TTATATATATATTA
*
86291513 TTAAATATCATTATTA
1 TTATATAT-A-TATTA
86291529 TTATATATATA-TA
1 TTATATATATATTA
86291542 -TATATATATACTTA
1 TTATATATATA-TTA
86291556 TGTA-ATATAT
1 T-TATATATAT
86291566 CAATAGTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
12 10 0.23
13 2 0.05
14 11 0.25
15 8 0.18
16 13 0.30
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (14 bp):
TTATATATATATTA
Found at i:86291685 original size:17 final size:17
Alignment explanation
Indices: 86291648--86291690 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
86291638 TGCTACGTAT
* *
86291648 ATATATGTATTTTTATT
1 ATATATGTATATTTATA
*
86291665 ATATATGTATATTTCTA
1 ATATATGTATATTTATA
86291682 ATATTATGT
1 ATA-TATGT
86291691 TACGTTGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (17 bp):
ATATATGTATATTTATA
Found at i:86296927 original size:14 final size:14
Alignment explanation
Indices: 86296908--86296942 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
86296898 GCCCTTTCCC
*
86296908 GGCCTTCAGACATA
1 GGCCTTCAAACATA
86296922 GGCCTTCAAACATA
1 GGCCTTCAAACATA
86296936 GGCCTTC
1 GGCCTTC
86296943 TACTACTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (14 bp):
GGCCTTCAAACATA
Found at i:86299673 original size:13 final size:14
Alignment explanation
Indices: 86299657--86299692 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
86299647 CAATCTCATA
86299657 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
86299670 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
86299683 TCTC-ATTTCA
1 TCTCAATTTCA
86299693 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:86299675 original size:26 final size:25
Alignment explanation
Indices: 86299637--86299699 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
86299627 AACCTTTTGG
*
86299637 TTCATATTTTCAATCTC-ATATCTCAAT
1 TTCA-ATTCTCAAT-TCAATATCTC-AT
*
86299664 TTCAATTCTCAATTCAATTTCTCAT
1 TTCAATTCTCAATTCAATATCTCAT
86299689 TTC-ATTC-CAAT
1 TTCAATTCTCAAT
86299700 AGCTCAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 4 0.12
24 4 0.12
25 7 0.21
26 14 0.42
27 4 0.12
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (25 bp):
TTCAATTCTCAATTCAATATCTCAT
Found at i:86299682 original size:18 final size:19
Alignment explanation
Indices: 86299644--86299684 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
86299634 TGGTTCATAT
86299644 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
86299663 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
86299681 TTTC
1 TTTC
86299685 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:86299819 original size:23 final size:23
Alignment explanation
Indices: 86299789--86299846 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
86299779 GCGGATTCCT
86299789 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
86299812 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
86299835 CCCAAACACACC
1 CCCAAACACACC
86299847 CGGAATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.47, C:0.43, G:0.03, T:0.07
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:86300178 original size:15 final size:15
Alignment explanation
Indices: 86300158--86300204 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
86300148 ACATATATAT
86300158 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
86300173 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
86300188 TTCAATCAATATAAA
1 TTCAATCAATATAAA
86300203 TT
1 TT
86300205 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:86301207 original size:21 final size:22
Alignment explanation
Indices: 86301154--86301208 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
86301144 CAATTTAAAT
*
86301154 AATAATAACAATAACAATAATA
1 AATAATAATAATAACAATAATA
* *
86301176 ATTAA-ATATAA-AACTATAATA
1 AATAATA-ATAATAACAATAATA
86301197 AATAATAATAAT
1 AATAATAATAAT
86301209 TTAATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAATAATAATAACAATAATA
Found at i:86304015 original size:37 final size:37
Alignment explanation
Indices: 86303965--86304043 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
86303955 TACGAAGTCT
86303965 TACCCGGACATAATCTCCACACGTAGTCATAGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATAGGGTCG
*
86304002 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATAGGGTCG
86304039 TACCC
1 TACCC
86304044 TGAACATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATAGGGTCG
Found at i:86306954 original size:66 final size:68
Alignment explanation
Indices: 86306878--86307064 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
86306868 TAGTACCACT
*
86306878 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
86306940 CACG
65 CACG
86306944 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
86307009 ATCACG
63 ATCACG
86307015 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
86307065 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:86306989 original size:71 final size:71
Alignment explanation
Indices: 86306901--86307064 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
86306891 CGATTTGTCT
86306901 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86306966 CTTTCA
66 CTTTCA
86306972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86307037 CTTTCA
66 CTTTCA
86307043 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86307065 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86307102 original size:71 final size:70
Alignment explanation
Indices: 86306901--86307098 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
86306891 CGATTTGTCT
* * *
86306901 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
86306966 CTTTCA
65 CTTTCA
* * *
86306972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
86307037 CTTTCA
65 CTTTCA
* *
86307043 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
86307099 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86314517 original size:66 final size:68
Alignment explanation
Indices: 86314441--86314627 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
86314431 TAGTACCACT
*
86314441 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
86314503 CACG
65 CACG
86314507 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
86314572 ATCACG
63 ATCACG
86314578 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
86314628 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:86314552 original size:71 final size:71
Alignment explanation
Indices: 86314464--86314627 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
86314454 CGATTTGTCT
86314464 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86314529 CTTTCA
66 CTTTCA
86314535 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86314600 CTTTCA
66 CTTTCA
86314606 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86314628 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86314665 original size:71 final size:70
Alignment explanation
Indices: 86314464--86314661 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
86314454 CGATTTGTCT
* * *
86314464 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
86314529 CTTTCA
65 CTTTCA
* * *
86314535 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
86314600 CTTTCA
65 CTTTCA
* *
86314606 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
86314662 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86320940 original size:17 final size:17
Alignment explanation
Indices: 86320905--86320943 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
86320895 ATGTGAACAC
86320905 ATGTAAAAATAAAATAT
1 ATGTAAAAATAAAATAT
86320922 ATGTATAAAATAATAATAT
1 ATGTA-AAAATAA-AATAT
86320941 ATG
1 ATG
86320944 AAATACTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 7 0.35
19 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (17 bp):
ATGTAAAAATAAAATAT
Found at i:86320972 original size:5 final size:5
Alignment explanation
Indices: 86320962--86320994 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86320952 AATATTTAAG
*
86320962 TATAT TATAT TATTT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
86320995 TATAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TATAT
Found at i:86321090 original size:17 final size:18
Alignment explanation
Indices: 86321065--86321099 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
86321055 AACGAAACAG
86321065 AGAAGAAAGAGAAAGAAA
1 AGAAGAAAGAGAAAGAAA
86321083 AGAA-AAAGAGAAAGAAA
1 AGAAGAAAGAGAAAGAAA
86321100 GGAGAAAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AGAAGAAAGAGAAAGAAA
Found at i:86323547 original size:24 final size:24
Alignment explanation
Indices: 86323516--86323591 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
86323506 TACCAATATA
86323516 TCAGCTCGTAAGAGCTTACTGGCT
1 TCAGCTCGTAAGAGCTTACTGGCT
86323540 TCAGCTCGTAAGAGCTTACTGGCT
1 TCAGCTCGTAAGAGCTTACTGGCT
* **
86323564 TCAGCTCATTGGAGCTTACT-G-T
1 TCAGCTCGTAAGAGCTTACTGGCT
86323586 TCAGCT
1 TCAGCT
86323592 TGTATTAGCT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
22 7 0.14
23 1 0.02
24 41 0.84
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.32
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGGCT
Found at i:86323591 original size:22 final size:23
Alignment explanation
Indices: 86323516--86323655 Score: 92
Period size: 24 Copynumber: 6.1 Consensus size: 23
86323506 TACCAATATA
* *
86323516 TCAGCTCGTAAGAGCTTACTGGCT
1 TCAGCTCATTAGAGCTTACT-GCT
* *
86323540 TCAGCTCGTAAGAGCTTACTGGCT
1 TCAGCTCATTAGAGCTTACT-GCT
*
86323564 TCAGCTCATTGGAGCTTACTG-T
1 TCAGCTCATTAGAGCTTACTGCT
* * *
86323586 TCAGCT--TGTATTAGCTTAGT-AT
1 TCAGCTCAT-TA-GAGCTTACTGCT
* * *
86323608 TCAGCTCAATAGAGCTTACCGTT
1 TCAGCTCATTAGAGCTTACTGCT
* *
86323631 TCAGCACAATAGAGCTTACTG-T
1 TCAGCTCATTAGAGCTTACTGCT
86323653 TCA
1 TCA
86323656 TCAACTCGGG
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 31 0.32
23 23 0.24
24 41 0.42
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (23 bp):
TCAGCTCATTAGAGCTTACTGCT
Found at i:86327183 original size:17 final size:17
Alignment explanation
Indices: 86327157--86327199 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
86327147 TTAAAACCCT
86327157 AAACCCTAATTCTTAAA
1 AAACCCTAATTCTTAAA
*
86327174 AAACCTTAATTCTTAAA
1 AAACCCTAATTCTTAAA
*
86327191 AAATCCTAA
1 AAACCCTAA
86327200 CCCTAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (17 bp):
AAACCCTAATTCTTAAA
Found at i:86328459 original size:29 final size:30
Alignment explanation
Indices: 86328422--86328482 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
86328412 AAAATTTGAG
*
86328422 AAAAGTATTTA-ATTTTAAATTTTTGAAAA
1 AAAAGTATTTAGATTTTAAAATTTTGAAAA
*
86328451 AAAAGTATTTAGTTTTTAAAATTTTGAAAA
1 AAAAGTATTTAGATTTTAAAATTTTGAAAA
86328481 AA
1 AA
86328483 GAAAACTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (30 bp):
AAAAGTATTTAGATTTTAAAATTTTGAAAA
Found at i:86331075 original size:16 final size:18
Alignment explanation
Indices: 86331054--86331090 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
86331044 TTTTATATAT
86331054 TATAAAT-T-ACATAATA
1 TATAAATATAACATAATA
*
86331070 TATAAATATAATATAATA
1 TATAAATATAACATAATA
86331088 TAT
1 TAT
86331091 TACAAACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAAATATAACATAATA
Found at i:86340722 original size:53 final size:53
Alignment explanation
Indices: 86340540--86340746 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
86340530 ATAAGGGTTT
* * * * *
86340540 AAGGATACCAAGTAAGAACATGCCAAGGCATGGC-ATCGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAAT-GGTAAG-TTCATAAGGC
* * *** * * * *
86340594 AAGGAAATCATGTAAGACCATATGAAGACATGGCATTGATAAACTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
86340649 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
86340702 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
86340747 TAAAAAAGAA
Statistics
Matches: 117, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
53 46 0.39
54 32 0.27
55 39 0.33
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:86342788 original size:70 final size:71
Alignment explanation
Indices: 86342705--86342867 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
86342695 CGATTTGTCT
86342705 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86342769 CTTTCA
66 CTTTCA
*
86342775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86342840 CTTTCA
66 CTTTCA
86342846 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86342868 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86342905 original size:71 final size:70
Alignment explanation
Indices: 86342705--86342901 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
86342695 CGATTTGTCT
* * * *
86342705 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86342769 CTTTCA
65 CTTTCA
* * * *
86342775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86342840 CTTTCA
65 CTTTCA
* *
86342846 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86342902 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86350318 original size:70 final size:71
Alignment explanation
Indices: 86350235--86350397 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
86350225 CGATTTGTCT
86350235 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86350299 CTTTCA
66 CTTTCA
*
86350305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
86350370 CTTTCA
66 CTTTCA
86350376 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
86350398 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:86350435 original size:71 final size:70
Alignment explanation
Indices: 86350235--86350431 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
86350225 CGATTTGTCT
* * * *
86350235 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86350299 CTTTCA
65 CTTTCA
* * * *
86350305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
86350370 CTTTCA
65 CTTTCA
* *
86350376 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
86350432 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:86352647 original size:30 final size:30
Alignment explanation
Indices: 86352629--86352687 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
86352619 ATATATGGCT
86352629 GTGTCGCATGGCCCTATGTCACACACGGCC
1 GTGTCGCATGGCCCTATGTCACACACGGCC
*
86352659 GTGTCGCATGGCCGTATGTCACACACGGC
1 GTGTCGCATGGCCCTATGTCACACACGGC
86352688 TGGAAGACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (30 bp):
GTGTCGCATGGCCCTATGTCACACACGGCC
Found at i:86353461 original size:20 final size:20
Alignment explanation
Indices: 86353438--86353542 Score: 65
Period size: 20 Copynumber: 5.2 Consensus size: 20
86353428 AGTACAAACA
86353438 AGGGCACGTAAGTGCAATTT
1 AGGGCACGTAAGTGCAATTT
* *
86353458 AGGGGCACCG-AAGTACAA-AT
1 A-GGGCA-CGTAAGTGCAATTT
*
86353478 AGGGGCAC-TAAGTGCAATTC
1 A-GGGCACGTAAGTGCAATTT
* ***
86353498 AGAGGTATCG-AAGTGCAAACA
1 AG-GGCA-CGTAAGTGCAATTT
*
86353519 AGGGCACATAAGTGCAATTT
1 AGGGCACGTAAGTGCAATTT
86353539 AGGG
1 AGGG
86353543 TATAATTAAG
Statistics
Matches: 63, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
19 10 0.16
20 28 0.44
21 23 0.37
22 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.18
Consensus pattern (20 bp):
AGGGCACGTAAGTGCAATTT
Found at i:86353510 original size:40 final size:41
Alignment explanation
Indices: 86353408--86353542 Score: 182
Period size: 41 Copynumber: 3.3 Consensus size: 41
86353398 GAGCATGTAT
* *
86353408 GTGCAATTTAGGGGTACCAAAGTACAAACAAGGGCACGTAA
1 GTGCAATTTAGGGGTACCGAAGTACAAACAAGGGCACATAA
* * *
86353449 GTGCAATTTAGGGGCACCGAAGTACAAATAGGGGCAC-TAA
1 GTGCAATTTAGGGGTACCGAAGTACAAACAAGGGCACATAA
* * * *
86353489 GTGCAATTCAGAGGTATCGAAGTGCAAACAAGGGCACATAA
1 GTGCAATTTAGGGGTACCGAAGTACAAACAAGGGCACATAA
86353530 GTGCAATTTAGGG
1 GTGCAATTTAGGG
86353543 TATAATTAAG
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 33 0.41
41 47 0.59
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (41 bp):
GTGCAATTTAGGGGTACCGAAGTACAAACAAGGGCACATAA
Found at i:86356642 original size:22 final size:22
Alignment explanation
Indices: 86356617--86356660 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
86356607 GACCTTTGAC
86356617 ATTGTTGTTCGGCCTTGAGGTA
1 ATTGTTGTTCGGCCTTGAGGTA
86356639 ATTGTTGTTCGGCCTTGAGGTA
1 ATTGTTGTTCGGCCTTGAGGTA
86356661 GTGCGAGTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.32, T:0.41
Consensus pattern (22 bp):
ATTGTTGTTCGGCCTTGAGGTA
Found at i:86359972 original size:18 final size:18
Alignment explanation
Indices: 86359937--86359979 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
86359927 TTATTAACAA
*
86359937 TTTAATATATATATTTAT
1 TTTAATATATATAGTTAT
86359955 TTTAATATCATAT-GTTAT
1 TTTAATAT-ATATAGTTAT
86359973 TATTAAT
1 T-TTAAT
86359980 TAATTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTAATATATATAGTTAT
Found at i:86364676 original size:28 final size:29
Alignment explanation
Indices: 86364622--86364678 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
86364612 TAAAAAGTAA
*
86364622 AAAGACTAAATTATTAAAAATAAAAAAAT
1 AAAGACTAAATTACTAAAAATAAAAAAAT
*
86364651 AAAGACTAAATT-CTAAAAGTAAAAAAAT
1 AAAGACTAAATTACTAAAAATAAAAAAAT
86364679 CTTAAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (29 bp):
AAAGACTAAATTACTAAAAATAAAAAAAT
Found at i:86365520 original size:30 final size:30
Alignment explanation
Indices: 86365484--86365543 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
86365474 CTGGGTTAAT
* *
86365484 CTAATATTTTTCTCATTAAAATATTGAAAA
1 CTAATATTTTTCCCATTAAAATATTAAAAA
86365514 CTAATATTTTTCCCATTAAAATATTAAAAA
1 CTAATATTTTTCCCATTAAAATATTAAAAA
86365544 ATTATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.42
Consensus pattern (30 bp):
CTAATATTTTTCCCATTAAAATATTAAAAA
Found at i:86365541 original size:8 final size:8
Alignment explanation
Indices: 86365528--86365611 Score: 57
Period size: 8 Copynumber: 10.2 Consensus size: 8
86365518 TATTTTTCCC
*
86365528 ATTAAAAT
1 ATTAAAAA
86365536 ATTAAAAA
1 ATTAAAAA
86365544 ATTATAAAA
1 ATTA-AAAA
*
86365553 ATT-AGAA
1 ATTAAAAA
86365560 A--AAAAA
1 ATTAAAAA
86365566 ATTATAAAA
1 ATTA-AAAA
86365575 ATAGTAAAAA
1 AT--TAAAAA
*
86365585 TATCAAAAA
1 -ATTAAAAA
* *
86365594 AATATAAA
1 ATTAAAAA
86365602 ATTAAAAA
1 ATTAAAAA
86365610 AT
1 AT
86365612 ATATGAAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
6 4 0.07
7 4 0.07
8 25 0.42
9 18 0.31
10 4 0.07
11 4 0.07
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.26
Consensus pattern (8 bp):
ATTAAAAA
Found at i:86365567 original size:22 final size:21
Alignment explanation
Indices: 86365539--86365584 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
86365529 TTAAAATATT
86365539 AAAAAATTATAAAAATTAGAAA
1 AAAAAATTATAAAAA-TAGAAA
*
86365561 AAAAAATTATAAAAATAGTAA
1 AAAAAATTATAAAAATAGAAA
86365582 AAA
1 AAA
86365585 TATCAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAAAATTATAAAAATAGAAA
Found at i:86365585 original size:18 final size:18
Alignment explanation
Indices: 86365562--86365801 Score: 80
Period size: 19 Copynumber: 12.8 Consensus size: 18
86365552 AATTAGAAAA
*
86365562 AAAAATTATAAAAATAGT
1 AAAAATTATAAAAATAAT
86365580 AAAAA-TATCAAAAA-AAT
1 AAAAATTAT-AAAAATAAT
86365597 ATAAAATTA-AAAAATATAT
1 A-AAAATTATAAAAATA-AT
* * * **
86365616 GAAAATTGATTTAAACTTTT
1 AAAAATT-A-TAAAAATAAT
86365636 AAAAATTATAAAAATTAAT
1 AAAAATTATAAAAA-TAAT
* *
86365655 AAATACTATCAAAAAT-AT
1 AAAAATTAT-AAAAATAAT
*
86365673 AATAAATCTA-ATAAAT--T
1 AA-AAAT-TATAAAAATAAT
* *
86365690 ATAAATTAATAAAACATATTT
1 AAAAATT-ATAAAA-ATA-AT
* *
86365711 AAAATTTCATAAAAATGTAT
1 AAAAATT-ATAAAAAT-AAT
* * *
86365731 TAAAATTCTATAAAATCAT
1 AAAAATTATA-AAAATAAT
** *
86365750 AAAAAGAATAAAAAGTATT
1 AAAAATTATAAAAA-TAAT
* *
86365769 AAAATTTATATAAAATCAT
1 AAAAATTATA-AAAATAAT
*
86365788 AAAAATCATAAAAA
1 AAAAATTATAAAAA
86365802 CCTGAATTGA
Statistics
Matches: 160, Mismatches: 40, Indels: 44
0.66 0.16 0.18
Matches are distributed among these distances:
15 1 0.01
16 5 0.03
17 16 0.10
18 44 0.28
19 47 0.29
20 31 0.19
21 16 0.10
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (18 bp):
AAAAATTATAAAAATAAT
Found at i:86365615 original size:28 final size:29
Alignment explanation
Indices: 86365560--86365620 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
86365550 AAAATTAGAA
*
86365560 AAAAAAATTATAAAAATAGTAAAAATATC
1 AAAAAAATTATAAAAATAGAAAAAATATC
* *
86365589 AAAAAAA-TATAAAATTA-AAAAATATATG
1 AAAAAAATTATAAAAATAGAAAAA-ATATC
86365617 AAAA
1 AAAA
86365621 TTGATTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.14
28 17 0.61
29 7 0.25
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (29 bp):
AAAAAAATTATAAAAATAGAAAAAATATC
Found at i:86365656 original size:10 final size:9
Alignment explanation
Indices: 86365530--86365801 Score: 95
Period size: 9 Copynumber: 29.7 Consensus size: 9
86365520 TTTTTCCCAT
86365530 TAAAATATTA
1 TAAAA-ATTA
86365540 -AAAAATTA
1 TAAAAATTA
86365548 TAAAAA-T-
1 TAAAAATTA
*
86365555 TAGAAA--A
1 TAAAAATTA
86365562 -AAAAATTA
1 TAAAAATTA
86365570 TAAAAA-TA
1 TAAAAATTA
86365578 GTAAAAA-TA
1 -TAAAAATTA
*
86365587 TCAAAAA-AA
1 T-AAAAATTA
86365596 TATAAAATTA
1 TA-AAAATTA
86365606 -AAAAATATA
1 TAAAAAT-TA
*
86365615 TGAAAATTGA
1 TAAAAATT-A
* * *
86365625 TTTAAACTTT
1 -TAAAAATTA
86365635 TAAAAATTA
1 TAAAAATTA
86365644 TAAAAATTAA
1 TAAAAATT-A
* *
86365654 TAAATACTA
1 TAAAAATTA
86365663 TCAAAAA-TA
1 T-AAAAATTA
86365672 TAATAAATCTA
1 TAA-AAAT-TA
*
86365683 -ATAAATTA
1 TAAAAATTA
86365691 T--AAATTAA
1 TAAAAATT-A
*
86365699 TAAAACATATT
1 TAAAA-AT-TA
*
86365710 TAAAATTTCA
1 TAAAAATT-A
86365720 TAAAAATGTA
1 TAAAAAT-TA
* *
86365730 TTAAAATTC
1 TAAAAATTA
*
86365739 TATAAAATCA
1 TA-AAAATTA
**
86365749 TAAAAAGAA
1 TAAAAATTA
*
86365758 TAAAAAGTA
1 TAAAAATTA
*
86365767 TTAAAATTTA
1 -TAAAAATTA
*
86365777 TATAAAATCA
1 TA-AAAATTA
*
86365787 TAAAAATCA
1 TAAAAATTA
86365796 TAAAAA
1 TAAAAA
86365802 CCTGAATTGA
Statistics
Matches: 202, Mismatches: 31, Indels: 59
0.69 0.11 0.20
Matches are distributed among these distances:
6 4 0.02
7 10 0.05
8 21 0.10
9 94 0.47
10 56 0.28
11 16 0.08
12 1 0.00
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (9 bp):
TAAAAATTA
Found at i:86365724 original size:21 final size:22
Alignment explanation
Indices: 86365698--86365750 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
86365688 TTATAAATTA
86365698 ATAAAACATAT-TTAAAATT-T
1 ATAAAACATATATTAAAATTCT
*
86365718 CATAAAA-ATGTATTAAAATTCT
1 -ATAAAACATATATTAAAATTCT
86365740 ATAAAATCATA
1 ATAAAA-CATA
86365751 AAAAGAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
21 20 0.77
22 1 0.04
23 2 0.08
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (22 bp):
ATAAAACATATATTAAAATTCT
Found at i:86365762 original size:38 final size:38
Alignment explanation
Indices: 86365719--86365801 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
86365709 TTAAAATTTC
*
86365719 ATAAAAATGTATTAAAA-TTCTATAAAATCATAAAAAGA
1 ATAAAAA-GTATTAAAATTTATATAAAATCATAAAAAGA
**
86365757 ATAAAAAGTATTAAAATTTATATAAAATCATAAAAATC
1 ATAAAAAGTATTAAAATTTATATAAAATCATAAAAAGA
86365795 ATAAAAA
1 ATAAAAA
86365802 CCTGAATTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 9 0.22
38 32 0.78
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.29
Consensus pattern (38 bp):
ATAAAAAGTATTAAAATTTATATAAAATCATAAAAAGA
Found at i:86366393 original size:17 final size:18
Alignment explanation
Indices: 86366357--86366391 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
86366347 AAATAGTTAA
86366357 ATATGTTTTTTTAATTTT
1 ATATGTTTTTTTAATTTT
86366375 ATAT-TTTTTTATAATTT
1 ATATGTTTTTT-TAATTT
86366392 ATTAGAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
ATATGTTTTTTTAATTTT
Found at i:86366429 original size:19 final size:19
Alignment explanation
Indices: 86366407--86366446 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
86366397 AGTTTTTATA
86366407 TTTTACAATATTT-ATAAGT
1 TTTTACAA-ATTTAATAAGT
*
86366426 TTTTATAAATTTAATAAGT
1 TTTTACAAATTTAATAAGT
86366445 TT
1 TT
86366447 ATATTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTACAAATTTAATAAGT
Found at i:86366455 original size:19 final size:18
Alignment explanation
Indices: 86366416--86366456 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
86366406 ATTTTACAAT
*
86366416 ATTTATAAGTTTTTATAA
1 ATTTATAAGTTTATATAA
*
86366434 ATTTAATAAGTTTATATTA
1 ATTT-ATAAGTTTATATAA
86366453 ATTT
1 ATTT
86366457 CAATGTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
ATTTATAAGTTTATATAA
Found at i:86366517 original size:18 final size:18
Alignment explanation
Indices: 86366496--86366533 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
86366486 TTTTTTACAA
86366496 ATTTTC-TTATTTTTTATG
1 ATTTTCATT-TTTTTTATG
86366514 ATTTTCAATTTTTTTTATG
1 ATTTTC-ATTTTTTTTATG
86366533 A
1 A
86366534 GAAAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 10 0.56
20 2 0.11
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTCATTTTTTTTATG
Found at i:86366518 original size:27 final size:26
Alignment explanation
Indices: 86366476--86366531 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
86366466 TAATATATAA
**
86366476 TATTTTTTATTTTTTTACAAATTTTCT
1 TATTTTTTATGATTTT-CAAATTTTCT
* *
86366503 TATTTTTTATGATTTTCAATTTTTTT
1 TATTTTTTATGATTTTCAAATTTTCT
86366529 TAT
1 TAT
86366532 GAGAAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (26 bp):
TATTTTTTATGATTTTCAAATTTTCT
Found at i:86371561 original size:17 final size:17
Alignment explanation
Indices: 86371539--86371582 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
86371529 TAAGAGTTAA
*
86371539 TTTTAATTTTTTTATTT
1 TTTTAATTTTTTCATTT
86371556 TTTTAATTTTTTCATTT
1 TTTTAATTTTTTCATTT
* *
86371573 ATGTAATTTT
1 TTTTAATTTT
86371583 AATTAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTAATTTTTTCATTT
Found at i:86371611 original size:9 final size:8
Alignment explanation
Indices: 86371539--86371607 Score: 52
Period size: 8 Copynumber: 8.4 Consensus size: 8
86371529 TAAGAGTTAA
86371539 TTTTAATTT
1 TTTTAA-TT
*
86371548 TTTTATTT
1 TTTTAATT
86371556 TTTTAATT
1 TTTTAATT
*
86371564 TTTTCATT
1 TTTTAATT
*
86371572 TATGTAATT
1 T-TTTAATT
86371581 TTAATTAA-T
1 TT--TTAATT
86371590 TTTT-ATT
1 TTTTAATT
*
86371597 TTATAATT
1 TTTTAATT
86371605 TTT
1 TTT
86371608 ATAACAGTCT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
6 1 0.02
7 6 0.13
8 23 0.49
9 14 0.30
10 3 0.06
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (8 bp):
TTTTAATT
Found at i:86373692 original size:62 final size:59
Alignment explanation
Indices: 86373576--86373696 Score: 147
Period size: 62 Copynumber: 2.0 Consensus size: 59
86373566 TTGTACAAAC
* **
86373576 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTCTAATAGTAAAT
1 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAACTAATAG-AAAT
*
86373636 TATTTTTATATT-TTGTCCTATTTAATAAAATAGAAGTTCTTTTGAATAAAAC-AATAGAAAT
1 TATTTTTATATTGTT-T-C-ATTTAATAAAATAAAAGTTCTTTTGAAT-AAACTAATAGAAAT
86373697 AACGCGACAC
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
59 2 0.04
60 13 0.25
61 5 0.09
62 31 0.58
63 2 0.04
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (59 bp):
TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAACTAATAGAAAT
Found at i:86376291 original size:49 final size:47
Alignment explanation
Indices: 86376230--86376401 Score: 161
Period size: 49 Copynumber: 3.6 Consensus size: 47
86376220 TGTTGTGTGT
* *
86376230 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAG
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTAATAGATGAAAG
* * * * *
86376278 CAAGTGTAAGACCTGTTTGGGACATGGCATCGGCGTCAATATATAAAAG
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-AATAGATGAAAG
* **
86376327 TCAGTGTAAGACCTGTCTGGGACACT-GCATCGACTTTAAT-G-TGTTAG
1 -CAGTGTAAGACCTGTCTGGGACA-TGGCATCGAC-CTAATAGATGAAAG
86376374 CCAGTGTAAGACCATGTCTGGGACATGG
1 -CAGTGTAAGACC-TGTCTGGGACATGG
86376402 TGTCGGTATT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
47 16 0.16
48 14 0.14
49 69 0.68
50 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAATAGATGAAAG
Found at i:86377306 original size:21 final size:22
Alignment explanation
Indices: 86377277--86377323 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
86377267 CACACAGGCA
*
86377277 GAGACACAACCGTGTATACTTT
1 GAGACACAACCGTGCATACTTT
**
86377299 GAGA-ACAACTTTGCATACTTT
1 GAGACACAACCGTGCATACTTT
86377320 GAGA
1 GAGA
86377324 GAGAAGTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (22 bp):
GAGACACAACCGTGCATACTTT
Found at i:86380980 original size:49 final size:49
Alignment explanation
Indices: 86380913--86381088 Score: 180
Period size: 49 Copynumber: 3.6 Consensus size: 49
86380903 GTTGTGCGTT
* *
86380913 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
* * * * *
86380962 AGTGTAAGACCTGTCTGGGACATGACATCGGC-CTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-TAATAGATGAAAGCC
* * * **
86381011 AGTGTAAGACCTGTCTGGGGCACGGCATCGA-ATTTAAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACA-CTAATAGATGAAAGCC
*
86381058 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
86381089 GCATTTTATC
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.16
48 17 0.17
49 70 0.68
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAAAGCC
Found at i:86381040 original size:98 final size:97
Alignment explanation
Indices: 86380913--86381090 Score: 243
Period size: 98 Copynumber: 1.8 Consensus size: 97
86380903 GTTGTGCGTT
*
86380913 AGTGTAAGACCTGTCTGGGACATGGCATCGACA-CCAATAGATGAGAGCCAGTGTAAGACC-TGT
1 AGTGTAAGACCTGTCTGGGACACGGCATCGA-ATCCAAT-G-TGAGAGCCAGTGTAAGACCATGT
*
86380976 CTGGGACATGACATCGGCCTTGATATATGAAAGTC
63 CTAGGACATGACATCGGCCTTGATATATGAAAGTC
* ** **
86381011 AGTGTAAGACCTGTCTGGGGCACGGCATCGAATTTAATGTGCTAGCCAGTGTAAGACCATGTCTA
1 AGTGTAAGACCTGTCTGGGACACGGCATCGAATCCAATGTGAGAGCCAGTGTAAGACCATGTCTA
*
86381076 GGACATGGCATCGGC
66 GGACATGACATCGGC
86381091 ATTTTATCCC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
96 17 0.24
97 21 0.30
98 32 0.46
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (97 bp):
AGTGTAAGACCTGTCTGGGACACGGCATCGAATCCAATGTGAGAGCCAGTGTAAGACCATGTCTA
GGACATGACATCGGCCTTGATATATGAAAGTC
Found at i:86383155 original size:21 final size:20
Alignment explanation
Indices: 86383130--86383249 Score: 89
Period size: 21 Copynumber: 5.8 Consensus size: 20
86383120 GAATCCCAAC
86383130 CCTTGAACCTTAAGCCATGAA
1 CCTTGAACCTTAA-CCATGAA
* * * *
86383151 TCTTGAACCTCAAACATCACA
1 CCTTGAACCTTAACCATGA-A
86383172 CCTTGAACCTTAAACC-TCGAA
1 CCTTGAACCTT-AACCAT-GAA
* *
86383193 CCTTGAACCTTGCACCTTGAA
1 CCTTGAACCTT-AACCATGAA
*
86383214 CCTTGCACCTTGAACCATGAA
1 CCTTGAACCTT-AACCATGAA
* * *
86383235 CTTTAAACCTCAACC
1 CCTTGAACCTTAACC
86383250 CTCAAGTTTA
Statistics
Matches: 78, Mismatches: 17, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
20 8 0.10
21 65 0.83
22 5 0.06
ACGTcount: A:0.32, C:0.33, G:0.10, T:0.25
Consensus pattern (20 bp):
CCTTGAACCTTAACCATGAA
Found at i:86383187 original size:7 final size:7
Alignment explanation
Indices: 86383171--86383235 Score: 85
Period size: 7 Copynumber: 9.3 Consensus size: 7
86383161 CAAACATCAC
86383171 ACCTTGA
1 ACCTTGA
*
86383178 ACCTTAA
1 ACCTTGA
*
86383185 ACCTCGA
1 ACCTTGA
86383192 ACCTTGA
1 ACCTTGA
*
86383199 ACCTTGC
1 ACCTTGA
86383206 ACCTTGA
1 ACCTTGA
*
86383213 ACCTTGC
1 ACCTTGA
86383220 ACCTTGA
1 ACCTTGA
*
86383227 ACCATGA
1 ACCTTGA
86383234 AC
1 AC
86383236 TTTAAACCTC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.29, C:0.34, G:0.12, T:0.25
Consensus pattern (7 bp):
ACCTTGA
Found at i:86383188 original size:14 final size:14
Alignment explanation
Indices: 86383130--86383244 Score: 77
Period size: 14 Copynumber: 8.2 Consensus size: 14
86383120 GAATCCCAAC
*
86383130 CCTTGAACCTTAAG
1 CCTTGAACCTTAAA
* * *
86383144 CCATGAATCTTGAA
1 CCTTGAACCTTAAA
** * * *
86383158 CCTCAAACATCACA
1 CCTTGAACCTTAAA
86383172 CCTTGAACCTTAAA
1 CCTTGAACCTTAAA
* *
86383186 CCTCGAACCTTGAA
1 CCTTGAACCTTAAA
* *
86383200 CCTTGCACCTTGAA
1 CCTTGAACCTTAAA
* *
86383214 CCTTGCACCTTGAA
1 CCTTGAACCTTAAA
* *
86383228 CCATGAACTTTAAA
1 CCTTGAACCTTAAA
86383242 CCT
1 CCT
86383245 CAACCCTCAA
Statistics
Matches: 75, Mismatches: 26, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 75 1.00
ACGTcount: A:0.31, C:0.32, G:0.10, T:0.26
Consensus pattern (14 bp):
CCTTGAACCTTAAA
Found at i:86383847 original size:21 final size:21
Alignment explanation
Indices: 86383786--86383890 Score: 95
Period size: 21 Copynumber: 5.0 Consensus size: 21
86383776 CCCAAACCCC
* * *
86383786 AAACCCTAAACCCCAAACCCT
1 AAACCCCAAACCTCAAACCTT
86383807 AAACCCCAAACCTCAAACCTT
1 AAACCCCAAACCTCAAACCTT
* *
86383828 AAACCTCAAACCTCAAACCTC
1 AAACCCCAAACCTCAAACCTT
***
86383849 AAACCTTGAACCT-AGAACCTT
1 AAACCCCAAACCTCA-AACCTT
* * *
86383870 GAACCCCAACCCTCGAACCTT
1 AAACCCCAAACCTCAAACCTT
86383891 GACTATGGAA
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
20 1 0.01
21 67 0.99
ACGTcount: A:0.39, C:0.42, G:0.04, T:0.15
Consensus pattern (21 bp):
AAACCCCAAACCTCAAACCTT
Found at i:86383854 original size:7 final size:7
Alignment explanation
Indices: 86383778--86383854 Score: 86
Period size: 7 Copynumber: 11.0 Consensus size: 7
86383768 TCTTAAATCC
*
86383778 CAAACCC
1 CAAACCT
86383785 CAAACC-
1 CAAACCT
*
86383791 CTAAACCC
1 C-AAACCT
86383799 CAAACC-
1 CAAACCT
*
86383805 CTAAACCC
1 C-AAACCT
86383813 CAAACCT
1 CAAACCT
86383820 CAAACCT
1 CAAACCT
*
86383827 TAAACCT
1 CAAACCT
86383834 CAAACCT
1 CAAACCT
86383841 CAAACCT
1 CAAACCT
86383848 CAAACCT
1 CAAACCT
86383855 TGAACCTAGA
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
6 2 0.03
7 59 0.94
8 2 0.03
ACGTcount: A:0.43, C:0.45, G:0.00, T:0.12
Consensus pattern (7 bp):
CAAACCT
Found at i:86383860 original size:14 final size:14
Alignment explanation
Indices: 86383815--86383889 Score: 80
Period size: 14 Copynumber: 5.4 Consensus size: 14
86383805 CTAAACCCCA
*
86383815 AACCTCAAACCTTA
1 AACCTCAAACCTTG
**
86383829 AACCTCAAACCTCA
1 AACCTCAAACCTTG
86383843 AACCTCAAACCTTG
1 AACCTCAAACCTTG
86383857 AACCT-AGAACCTTG
1 AACCTCA-AACCTTG
* * *
86383871 AACCCCAACCCTCG
1 AACCTCAAACCTTG
86383885 AACCT
1 AACCT
86383890 TGACTATGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
13 1 0.02
14 50 0.96
15 1 0.02
ACGTcount: A:0.37, C:0.40, G:0.05, T:0.17
Consensus pattern (14 bp):
AACCTCAAACCTTG
Found at i:86385581 original size:27 final size:29
Alignment explanation
Indices: 86385527--86385582 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
86385517 AAAGAAAGGA
*
86385527 AGAAAAAGAAAACAAGGAATTAAAAAATT
1 AGAAAAAGAAAACAAGGAATGAAAAAATT
* *
86385556 AGAAAAAGTAAA-AA-GAATGATAAAATT
1 AGAAAAAGAAAACAAGGAATGAAAAAATT
86385583 TCTTAGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.46
28 2 0.08
29 11 0.46
ACGTcount: A:0.68, C:0.02, G:0.14, T:0.16
Consensus pattern (29 bp):
AGAAAAAGAAAACAAGGAATGAAAAAATT
Found at i:86390178 original size:14 final size:15
Alignment explanation
Indices: 86390149--86390182 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
86390139 ATAATATAAG
*
86390149 ATAATGTAATTTACC
1 ATAATCTAATTTACC
86390164 ATAATCTAA-TTACC
1 ATAATCTAATTTACC
86390178 ATAAT
1 ATAAT
86390183 TCATTCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (15 bp):
ATAATCTAATTTACC
Found at i:86395777 original size:25 final size:27
Alignment explanation
Indices: 86395730--86395798 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
86395720 CCTGAACCCT
86395730 TATGAGATAAAATGACT-ATTTTTCCC
1 TATGAGATAAAATGACTAATTTTTCCC
* *
86395756 TATGTGATAAATTGAC-AATTTTTCCC
1 TATGAGATAAAATGACTAATTTTTCCC
*
86395782 TTATGAGGTAAAATGAC
1 -TATGAGATAAAATGAC
86395799 GTGTTTGCGC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 23 0.64
27 13 0.36
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (27 bp):
TATGAGATAAAATGACTAATTTTTCCC
Found at i:86395786 original size:27 final size:27
Alignment explanation
Indices: 86395726--86395905 Score: 159
Period size: 27 Copynumber: 6.7 Consensus size: 27
86395716 CGTACCTGAA
* *
86395726 CCCTTATGAGATAAAATGACTATTTTT
1 CCCTTATGAGATAAAATGACGATTTTG
* * * *
86395753 CCC-TATGTGATAAATTGACAATTTTT
1 CCCTTATGAGATAAAATGACGATTTTG
*
86395779 CCCTTATGAGGTAAAATGACG-TGTTTG
1 CCCTTATGAGATAAAATGACGAT-TTTG
* * **
86395806 CGCTTATGTGGCAAAATGACTG-TTTTG
1 CCCTTATGAGATAAAATGAC-GATTTTG
* *
86395833 CCCTTATGTGATAAAATAACGATTTTG
1 CCCTTATGAGATAAAATGACGATTTTG
* * *
86395860 CCCTTATGAGGTAAAATGACGGTTTTT
1 CCCTTATGAGATAAAATGACGATTTTG
* *
86395887 CCTTTATGAGGTAAAATGA
1 CCCTTATGAGATAAAATGA
86395906 TTGTTTTGCC
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 25 0.20
27 101 0.79
28 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (27 bp):
CCCTTATGAGATAAAATGACGATTTTG
Found at i:86395858 original size:81 final size:80
Alignment explanation
Indices: 86395729--86395922 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 80
86395719 ACCTGAACCC
** * * * * *
86395729 TTATGAGATAAAATGACTATTTTTCCCTATGTGATAAATTGACAATTTTTCCCTTATGAGGTAAA
1 TTATGAGGCAAAATGACTGTTTTGCCCTATGTGATAAAATAACAATTTTGCCCTTATGAGGTAAA
86395794 ATGAC-GTGTTTGCGC-
66 ATGACGGT-TTTGC-CT
* *
86395809 TTATGTGGCAAAATGACTGTTTTGCCCTTATGTGATAAAATAACGATTTTGCCCTTATGAGGTAA
1 TTATGAGGCAAAATGACTGTTTTGCCC-TATGTGATAAAATAACAATTTTGCCCTTATGAGGTAA
*
86395874 AATGACGGTTTTTCCT
65 AATGACGGTTTTGCCT
* *
86395890 TTATGAGGTAAAATGATTGTTTTGCCCCTATGT
1 TTATGAGGCAAAATGACTGTTTTG-CCCTATGT
86395923 AATGTATGTG
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
80 23 0.24
81 69 0.71
82 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (80 bp):
TTATGAGGCAAAATGACTGTTTTGCCCTATGTGATAAAATAACAATTTTGCCCTTATGAGGTAAA
ATGACGGTTTTGCCT
Found at i:86395913 original size:54 final size:53
Alignment explanation
Indices: 86395726--86395922 Score: 189
Period size: 54 Copynumber: 3.7 Consensus size: 53
86395716 CGTACCTGAA
* * * * *
86395726 CCCTTATGAGATAAAATGACTATTTTTCCC-TATGTGATAAATTGACAATTTTT
1 CCCTTATGAGATAAAATGAC-GTTTTGCCCTTATGTGGTAAAATGACAGTTTTT
* * * * *
86395779 CCCTTATGAGGTAAAATGACGTGTTTGCGCTTATGTGGCAAAATGACTGTTTTG
1 CCCTTATGAGATAAAATGACGT-TTTGCCCTTATGTGGTAAAATGACAGTTTTT
* * * *
86395833 CCCTTATGTGATAAAATAACGATTTTGCCCTTATGAGGTAAAATGACGGTTTTT
1 CCCTTATGAGATAAAATGACG-TTTTGCCCTTATGTGGTAAAATGACAGTTTTT
* * * *
86395887 CCTTTATGAGGTAAAATGATTGTTTTGCCCCTATGT
1 CCCTTATGAGATAAAATGA-CGTTTTGCCCTTATGT
86395923 AATGTATGTG
Statistics
Matches: 115, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
52 1 0.01
53 24 0.21
54 88 0.77
55 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (53 bp):
CCCTTATGAGATAAAATGACGTTTTGCCCTTATGTGGTAAAATGACAGTTTTT
Found at i:86400837 original size:14 final size:13
Alignment explanation
Indices: 86400818--86400850 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
86400808 ATAACGTGAT
86400818 TTACCATAATCTCA
1 TTACCATAAT-TCA
86400832 TTACCATAATTCA
1 TTACCATAATTCA
86400845 TT-CCAT
1 TTACCAT
86400851 CACAAACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.39
Consensus pattern (13 bp):
TTACCATAATTCA
Found at i:86409022 original size:16 final size:16
Alignment explanation
Indices: 86409001--86409032 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86408991 CATACCCACT
86409001 TATAGTTTTCAATAAC
1 TATAGTTTTCAATAAC
86409017 TATAGTTTTCAATAAC
1 TATAGTTTTCAATAAC
86409033 ACTTAACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (16 bp):
TATAGTTTTCAATAAC
Found at i:86414131 original size:13 final size:13
Alignment explanation
Indices: 86414113--86414141 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
86414103 TCCTGGGCTA
86414113 TTCCTGGCACTAG
1 TTCCTGGCACTAG
86414126 TTCCTGGCACTAG
1 TTCCTGGCACTAG
86414139 TTC
1 TTC
86414142 AATACCAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.31, G:0.21, T:0.34
Consensus pattern (13 bp):
TTCCTGGCACTAG
Found at i:86417230 original size:39 final size:39
Alignment explanation
Indices: 86417183--86417365 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
86417173 AATGTTCGAG
86417183 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86417222 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
86417261 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
86417300 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
86417340 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
86417366 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:86424663 original size:39 final size:39
Alignment explanation
Indices: 86424616--86424798 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
86424606 AATGTTCGAG
86424616 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86424655 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
86424694 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
86424733 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
86424773 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
86424799 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:86436569 original size:40 final size:40
Alignment explanation
Indices: 86436510--86436697 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
86436500 ATAACCGCAA
* * * *
86436510 GCACAATTGCCTTCAGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
*
86436550 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
86436590 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
* *
86436630 GCACAAATGCCTTCGGGTCTTAACCTGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAA-CAACTC
* * *
86436670 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
86436698 GTATCATTCA
Statistics
Matches: 135, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 134 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
Found at i:86454911 original size:27 final size:27
Alignment explanation
Indices: 86454598--86454910 Score: 414
Period size: 27 Copynumber: 11.6 Consensus size: 27
86454588 AAAGTACTCC
86454598 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86454625 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
86454652 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86454679 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
86454706 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
86454733 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
86454760 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86454787 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86454814 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
86454841 CAATTTACAAAATTACTGTTTCACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86454868 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86454895 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
86454911 TAAAATACCC
Statistics
Matches: 250, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 246 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:86454919 original size:27 final size:27
Alignment explanation
Indices: 86454808--86454975 Score: 88
Period size: 27 Copynumber: 6.2 Consensus size: 27
86454798 ATTATCGTTT
* * ***
86454808 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* ***
86454835 TACCCTCAATTTACAAAATTACT-GTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
86454861 TCACCCTTGATTTACAGAATTACTGTTT
1 T-ACCCTCGATTTACAAAATTACTAAAA
86454889 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * **
86454916 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTCGATTTACAAAATTACTA-AAA
* ** *
86454943 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
86454970 CACCCT
1 TACCCT
86454976 TGTAGGATGA
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.03
27 107 0.93
28 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:86454936 original size:54 final size:54
Alignment explanation
Indices: 86454660--86454977 Score: 149
Period size: 54 Copynumber: 5.9 Consensus size: 54
86454650 CTCGATTTGT
* * * **** * *
86454660 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTACTAAATCACCCTTGA-TTTAC
* * * * **** * **
86454714 AGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTACTAAATCACCCTTGATTTAC
* * * * * * * *
86454768 ATAATTACCGTTTTACCCCCGATTTACATAATTATCGT--TTTACCCTCGATTTAC
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTA-C-TAAATCACCCTTGATTTAC
* ** ***
86454822 AGAATTACCATTTTACCCTCAATTTACAAAATTACTGTTTCACCCTTGATTTAC
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTACTAAATCACCCTTGATTTAC
* * * **
86454876 AGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAAT-ACCCTTGGTTTGT
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTACT-AAATCACCCTTGATTTAC
* *** ** * *
86454930 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAACACCCTTG
1 AAAATTACTGTTTTACCCTCAATTTACAAAATTACTAAATCACCCTTG
86454978 TAGGATGAAA
Statistics
Matches: 219, Mismatches: 38, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.00
53 4 0.02
54 211 0.96
55 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTGTTTTACCCTCAATTTACAAAATTACTAAATCACCCTTGATTTAC
Found at i:86455072 original size:27 final size:27
Alignment explanation
Indices: 86454995--86455072 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
86454985 AAATGACTAA
*
86454995 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
86455022 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
86455049 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
86455073 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:86456306 original size:9 final size:9
Alignment explanation
Indices: 86456294--86456350 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86456284 TTTGATAAAC
86456294 ATGATATGT
1 ATGATATGT
*
86456303 ATGATATGCAC
1 ATGATATG--T
*
86456314 ATGACATGT
1 ATGATATGT
*
86456323 ATGATATGCAC
1 ATGATATG--T
86456334 ATGATATGT
1 ATGATATGT
86456343 ATGATATG
1 ATGATATG
86456351 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:86456317 original size:20 final size:20
Alignment explanation
Indices: 86456292--86456354 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86456282 ATTTTGATAA
86456292 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86456312 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86456332 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86456352 ACA
1 ACA
86456355 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86456465 original size:24 final size:24
Alignment explanation
Indices: 86456409--86456645 Score: 338
Period size: 24 Copynumber: 10.0 Consensus size: 24
86456399 GAGGAAGTGA
86456409 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86456432 TAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
86456456 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
86456480 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
86456503 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
86456527 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
86456551 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86456574 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86456598 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
86456622 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
86456646 ATGATAAAGC
Statistics
Matches: 193, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
23 63 0.33
24 119 0.62
25 11 0.06
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:86456478 original size:47 final size:47
Alignment explanation
Indices: 86456409--86456624 Score: 335
Period size: 47 Copynumber: 4.6 Consensus size: 47
86456399 GAGGAAGTGA
*
86456409 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
86456456 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
86456503 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
86456551 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
86456598 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
86456625 AGAGGCTAGG
Statistics
Matches: 156, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
47 115 0.74
48 41 0.26
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:86456525 original size:71 final size:71
Alignment explanation
Indices: 86456409--86456645 Score: 395
Period size: 71 Copynumber: 3.3 Consensus size: 71
86456399 GAGGAAGTGA
* *
86456409 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
86456474 GTTATC
66 GTTATC
86456480 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
86456545 GTTATC
66 GTTATC
* *
86456551 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
86456616 GTTATT
66 GTTATC
*
86456622 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
86456646 ATGATAAAGC
Statistics
Matches: 158, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
71 147 0.93
72 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:86456874 original size:31 final size:31
Alignment explanation
Indices: 86456839--86456902 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86456829 CGTTTACCGT
*
86456839 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86456870 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86456901 AA
1 AA
86456903 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86460062 original size:27 final size:27
Alignment explanation
Indices: 86459724--86460061 Score: 468
Period size: 27 Copynumber: 12.6 Consensus size: 27
86459714 AAAGTACTCC
86459724 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86459751 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
86459778 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86459805 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
86459832 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
86459859 CGATTTACAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86459885 CAATTTACATAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86459911 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86459938 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86459965 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
86459992 CGATTTACAAAATTACTGTTTCACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
86460019 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86460046 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
86460062 TAAAATACCC
Statistics
Matches: 278, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
26 50 0.18
27 226 0.81
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:86460220 original size:27 final size:27
Alignment explanation
Indices: 86460143--86460220 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
86460133 AAATGACTAA
* *
86460143 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
86460170 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
86460197 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
86460221 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:86461455 original size:9 final size:9
Alignment explanation
Indices: 86461441--86461497 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86461431 TTTAATAAAC
86461441 ATGATATGT
1 ATGATATGT
*
86461450 ATGATATGCAC
1 ATGATATG--T
*
86461461 ATGACATGT
1 ATGATATGT
*
86461470 ATGATATGCAC
1 ATGATATG--T
86461481 ATGATATGT
1 ATGATATGT
86461490 ATGATATG
1 ATGATATG
86461498 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:86461464 original size:20 final size:20
Alignment explanation
Indices: 86461439--86461501 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86461429 ATTTTAATAA
86461439 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86461459 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86461479 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86461499 ACA
1 ACA
86461502 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86461611 original size:24 final size:24
Alignment explanation
Indices: 86461555--86461789 Score: 311
Period size: 23 Copynumber: 10.0 Consensus size: 24
86461545 GAGGAAGTGA
86461555 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86461578 TAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
86461602 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
86461626 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86461649 TAAAGGGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
86461673 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
86461697 -AAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86461719 TAAAGGGCTTATG-CCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
86461742 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
86461766 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
86461790 ATGATAAAGC
Statistics
Matches: 188, Mismatches: 17, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
22 9 0.05
23 84 0.45
24 84 0.45
25 11 0.06
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:86461624 original size:47 final size:47
Alignment explanation
Indices: 86461555--86461768 Score: 308
Period size: 47 Copynumber: 4.6 Consensus size: 47
86461545 GAGGAAGTGA
*
86461555 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
86461602 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* * *
86461649 TAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
86461697 -AAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
86461742 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
86461769 AGAGGCTAGG
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
45 9 0.06
46 36 0.24
47 87 0.57
48 20 0.13
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:86462018 original size:31 final size:31
Alignment explanation
Indices: 86461983--86462046 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86461973 CGTTTACCGT
*
86461983 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86462014 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86462045 AA
1 AA
86462047 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86469418 original size:40 final size:41
Alignment explanation
Indices: 86469343--86469419 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
86469333 TGTTATTGAA
* * *
86469343 TACTGCATAACTGCTACTGATACTGTGATGGGCTAAGGCCC
1 TACTGCATAACTGATACTGATACTGAGATGAGCTAAGGCCC
**
86469384 TACTGCATATTTGATACTG-TACTGAGATGAGCTAAG
1 TACTGCATAACTGATACTGATACTGAGATGAGCTAAG
86469420 TCCCAAACCG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 15 0.48
41 16 0.52
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
TACTGCATAACTGATACTGATACTGAGATGAGCTAAGGCCC
Found at i:86471794 original size:24 final size:24
Alignment explanation
Indices: 86471766--86471817 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
86471756 TTACTAAGTC
* *
86471766 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
86471790 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
86471814 AAAT
1 AAAT
86471818 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:86474012 original size:49 final size:49
Alignment explanation
Indices: 86473938--86474061 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
86473928 ATACTAACAT
*
86473938 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG-GCCGATGC
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCG-GTGCCGATGC
* * * *
86473988 CATGTCTCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGC
1 CATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGTGCCGATGC
*
86474037 CATGTCCCAGACAAGTCTTACACTG
1 CATGTCCCAGACAGGTCTTACACTG
86474062 ACACACCACA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 1 0.02
49 53 0.80
50 12 0.18
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGTGCCGATGC
Found at i:86474140 original size:48 final size:48
Alignment explanation
Indices: 86474081--86474245 Score: 174
Period size: 48 Copynumber: 3.5 Consensus size: 48
86474071 AAGCTGACAC
* * * * *
86474081 CATGT-CCAGACAGGTTTTACACTAGCTTGTATATCGCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCCGATA
* ** *
86474128 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCCGATA
* * * * *
86474174 TATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCCGATA
*
86474222 CATGTCCCAGACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
86474246 GGCTCTCATG
Statistics
Matches: 95, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
46 35 0.37
47 8 0.08
48 52 0.55
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCCGATA
Found at i:86474226 original size:94 final size:94
Alignment explanation
Indices: 86474119--86474291 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 94
86474109 GTATATCGCA
* * * *
86474119 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAAT-GCCGATATATGTCCC
1 AGGCCGATACATGTCCCAGACATATCTTACACTAGCTCTCATGCT--ATGGCCGATACATGTCCC
86474182 AAACATGTCTTACACTGGCTTAAATATCTCG
64 AAACATGTCTTACACTGGCTTAAATATCTCG
* * * *
86474213 AGGCCGATACATGTCCCAGACATATCTTACACTGGCTCTCATGCTGTGGCTGATGCATGTCCCAA
1 AGGCCGATACATGTCCCAGACATATCTTACACTAGCTCTCATGCTATGGCCGATACATGTCCCAA
86474278 ACATGTCTTACACT
66 ACATGTCTTACACT
86474292 AGCAGACATA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 66 0.96
95 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
AGGCCGATACATGTCCCAGACATATCTTACACTAGCTCTCATGCTATGGCCGATACATGTCCCAA
ACATGTCTTACACTGGCTTAAATATCTCG
Found at i:86474246 original size:48 final size:46
Alignment explanation
Indices: 86473938--86474291 Score: 200
Period size: 46 Copynumber: 7.5 Consensus size: 46
86473928 ATACTAACAT
* * * *
86473938 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCGATGC
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT--CAAGGCCGAT-A
* * * * *
86473988 CATGTCTCAGACAGGTCTTACACTGGCTCTCATCT-ATCGGTGTCGATGC
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCA--AG-GCCGAT-A
* * * * * * *
86474037 CATGTCCCAGACAAGTCTTACACT-G-ACACACCACAA-GCTGACA
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATA
* * * * * * *
86474080 CCATGT-CCAGACAGGTTTTACACTAGCTTGTATATCGCAAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTGGC-TCT-CATCTCAAGGCCGATA
* * *
86474128 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATA
* * * *
86474174 TATGTCCCAAACATGTCTTACACTGGCT-TAAATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTCT---CATCTCAAGGCCGATA
* ** * *
86474222 CATGTCCCAGACATATCTTACACTGGCTCTCATGCT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAT-CTCAAGGCCGATA
*
86474268 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
86474292 AGCAGACATA
Statistics
Matches: 235, Mismatches: 53, Indels: 36
0.73 0.16 0.11
Matches are distributed among these distances:
43 16 0.07
44 9 0.04
45 1 0.00
46 67 0.29
47 18 0.08
48 63 0.27
49 49 0.21
50 12 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATA
Found at i:86476701 original size:24 final size:24
Alignment explanation
Indices: 86476673--86476724 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
86476663 TTAGTAAGTC
*
86476673 AAATAAACTATGCTAATAAATACT
1 AAATAAACTATACTAATAAATACT
* *
86476697 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
86476721 AAAT
1 AAAT
86476725 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:86481237 original size:30 final size:29
Alignment explanation
Indices: 86481174--86481296 Score: 165
Period size: 29 Copynumber: 4.2 Consensus size: 29
86481164 TGACGAGATC
*
86481174 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
*
86481203 GGCACTAAGTGTGCGTGCTGGAAATATAAT
1 GGCACTAAGTGTGCATGCTGGAAATAT-AT
*
86481233 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
* * * * *
86481262 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATATAT
86481291 GGCACT
1 GGCACT
86481297 GGGTGTGCGA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
29 59 0.69
30 27 0.31
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:86481246 original size:59 final size:59
Alignment explanation
Indices: 86481174--86481285 Score: 170
Period size: 59 Copynumber: 1.9 Consensus size: 59
86481164 TGACGAGATC
* * * **
86481174 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAAT
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAAT
*
86481233 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAA
86481286 AATACGGCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (59 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAAT
Found at i:86489165 original size:29 final size:29
Alignment explanation
Indices: 86489132--86489262 Score: 156
Period size: 29 Copynumber: 4.5 Consensus size: 29
86489122 TGACGAGATC
*
86489132 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
86489161 GGCACTAAGTGTGCGTGCTGGAAATATAAT
1 GGCACTAAGTGTGCGTGCTGGAAAAAT-AT
*
86489191 -GCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
86489219 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
86489248 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
86489263 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
28 2 0.02
29 86 0.96
30 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:86491247 original size:79 final size:78
Alignment explanation
Indices: 86491161--86491328 Score: 228
Period size: 78 Copynumber: 2.1 Consensus size: 78
86491151 CTTTGGGACA
* ** *
86491161 TAGCCCGGTTAAGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
1 TAGCCCGGATAACATAACCCACACAAAGGCCTTCGGG-CTTAACCCGGATATCACAATTTGCACA
86491226 ATTGCCTTCGGGCT
65 ATTGCCTTCGGGCT
* * ** * * *
86491240 TAGCCCGGATATCATAACTCACACAATTGTCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAA
1 TAGCCCGGATAACATAACCCACACAAAGGCCTTCGGGCTTAACCCGGATATCACAATTTGCACAA
86491305 TTGCCTTCGGGCT
66 TTGCCTTCGGGCT
86491318 TAGCCCGGATA
1 TAGCCCGGATA
86491329 TCACTCGAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
78 50 0.64
79 28 0.36
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (78 bp):
TAGCCCGGATAACATAACCCACACAAAGGCCTTCGGGCTTAACCCGGATATCACAATTTGCACAA
TTGCCTTCGGGCT
Found at i:86491265 original size:39 final size:39
Alignment explanation
Indices: 86491189--86491332 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
86491179 CCGCACAAAG
*
86491189 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * **
86491229 GCCTTCGGGCTTAGCCCGGATATCATAACTCACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
* *
86491268 GTCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
86491307 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
86491333 TCGAACATTC
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 82 0.90
40 9 0.10
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:86498015 original size:21 final size:20
Alignment explanation
Indices: 86497961--86498016 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 20
86497951 TATTTTCATT
*
86497961 AATAA-AATTATTATTTA-A
1 AATAATAATTATTATTAATA
*
86497979 AATAAT-ATAATT-TTAATA
1 AATAATAATTATTATTAATA
86497997 AATAATAATTATTTATTAAT
1 AATAATAATTA-TTATTAAT
86498017 TTCATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
17 3 0.10
18 17 0.57
19 3 0.10
20 2 0.07
21 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAATAATTATTATTAATA
Found at i:86498970 original size:2 final size:2
Alignment explanation
Indices: 86498963--86498987 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86498953 AAATTTCTCC
86498963 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
86498988 AAACTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86502322 original size:21 final size:21
Alignment explanation
Indices: 86502296--86502335 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86502286 CAAAATGAAG
* *
86502296 TGGTTTTGCCTTTTAACTTAA
1 TGGTTTTGACTTTGAACTTAA
86502317 TGGTTTTGACTTTGAACTT
1 TGGTTTTGACTTTGAACTT
86502336 TAGAAAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.12, G:0.17, T:0.53
Consensus pattern (21 bp):
TGGTTTTGACTTTGAACTTAA
Found at i:86504434 original size:19 final size:22
Alignment explanation
Indices: 86504395--86504434 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
86504385 AGAAACCCAA
86504395 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
86504417 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
86504435 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Done.