Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 287 of 378
Found at i:86504533 original size:27 final size:28
Alignment explanation
Indices: 86504496--86504635 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
86504486 AGCATGGCTG
* *
86504496 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
86504522 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
86504550 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
86504577 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
86504604 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
86504631 CCAGA
1 CCAGA
86504636 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:86504765 original size:26 final size:26
Alignment explanation
Indices: 86504736--86504812 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
86504726 GTCAAAATTA
*
86504736 ACCTAGGGGTATAACGGTAATTTTGC
1 ACCTAGGGGTATAACAGTAATTTTGC
*
86504762 ACCTAGGGGTATAACAGTAATTTTCC
1 ACCTAGGGGTATAACAGTAATTTTGC
* * *
86504788 ATACATAGGGGTATTATAGTAATTT
1 --ACCTAGGGGTATAACAGTAATTT
86504813 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.55
28 20 0.45
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (26 bp):
ACCTAGGGGTATAACAGTAATTTTGC
Found at i:86506291 original size:26 final size:26
Alignment explanation
Indices: 86506253--86506336 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
86506243 CATGAAATTC
* *
86506253 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
86506279 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
86506305 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86506331 TTATCA
1 TTATCA
86506337 GTTTGTACCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:86510415 original size:46 final size:44
Alignment explanation
Indices: 86510311--86510418 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
86510301 TGTCTTTGAC
** * * *
86510311 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
86510355 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
86510401 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
86510419 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:86516229 original size:13 final size:13
Alignment explanation
Indices: 86516211--86516235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86516201 ATTCATTTAG
86516211 CATTTCAAATGTT
1 CATTTCAAATGTT
86516224 CATTTCAAATGT
1 CATTTCAAATGT
86516236 CCCTTTTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
CATTTCAAATGTT
Found at i:86516354 original size:13 final size:13
Alignment explanation
Indices: 86516336--86516361 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86516326 CATCTACTTT
86516336 ATATAACCATTTC
1 ATATAACCATTTC
86516349 ATATAACCATTTC
1 ATATAACCATTTC
86516362 GTATTATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATAACCATTTC
Found at i:86516614 original size:45 final size:45
Alignment explanation
Indices: 86516572--86516660 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
86516562 ATTTTATTTA
*
86516572 TTTCTAACATGATGCCATAGTGTCTTTTAACTATGGTCTTATTCT
1 TTTCTAACATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCT
** * * *
86516617 TTTCTGTCATGTTTCCATAGTTTCTTTCAACTATGGTCTTATTC
1 TTTCTAACATGATGCCATAGTGTCTTTCAACTATGGTCTTATTC
86516661 ATATTTCAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (45 bp):
TTTCTAACATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCT
Found at i:86516939 original size:14 final size:14
Alignment explanation
Indices: 86516904--86516945 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
86516894 GGCCCATCAT
86516904 AAACCAAA-AAATA
1 AAACCAAATAAATA
*
86516917 ATA--AAATAAATA
1 AAACCAAATAAATA
86516929 AAACCAAATAAATA
1 AAACCAAATAAATA
86516943 AAA
1 AAA
86516946 GTCCAAGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 3 0.12
12 7 0.29
13 2 0.08
14 12 0.50
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (14 bp):
AAACCAAATAAATA
Found at i:86520618 original size:45 final size:43
Alignment explanation
Indices: 86520551--86520764 Score: 239
Period size: 45 Copynumber: 4.8 Consensus size: 43
86520541 AGTCACCGTA
* * *
86520551 ACAAATCTTATCTCCTTTAAGTTGCAGAAGAGCAGATTGAAAAT
1 ACAAATCTTATCT-CTTGAAGTTGCAGTAGAGCAGATTGAAGAT
* * *
86520595 AGCGAATCTTATCTCTATGAAGTTGCAGTAGAACAGATTGAAGCT
1 A-CAAATCTTATCTCT-TGAAGTTGCAGTAGAGCAGATTGAAGAT
* * * *
86520640 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGAT
1 ACAAATCTTATCT-CTTGAAGTTGCAGTAGAGCAGATTGAAGAT
* * *
86520684 AGCAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCT
1 A-CAAATCTTATCT-CTTGAAGTTGCAGTAGAGCAGATTGAAGAT
*
86520729 ACAAATCTTATCTTGTTGAAGTTGCAGTAGAGCAGA
1 ACAAATCTTATC-TCTTGAAGTTGCAGTAGAGCAGA
86520765 CTGACGCGAC
Statistics
Matches: 146, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
44 70 0.48
45 76 0.52
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (43 bp):
ACAAATCTTATCTCTTGAAGTTGCAGTAGAGCAGATTGAAGAT
Found at i:86520662 original size:44 final size:44
Alignment explanation
Indices: 86520551--86520779 Score: 262
Period size: 44 Copynumber: 5.2 Consensus size: 44
86520541 AGTCACCGTA
* * **
86520551 ACAAATCTTATCTCCTTTAAGTTGCAGAAGAGCAGATTGAAAAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCT
* *
86520595 AGCGAATCTTATCT-CTATGAAGTTGCAGTAGAACAGATTGAAGCT
1 A-CAAATCTTATCTCCT-TGAAGTTGCAGTAGAGCAGATTGAAGCT
* * * * *
86520640 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCT
* *
86520684 AGCAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCT
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCT
** * * *
86520729 ACAAATCTTATCTTGTTGAAGTTGCAGTAGAGCAGACTGACGCG
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCT
86520773 ACAAATC
1 ACAAATC
86520780 CTATACCTTC
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
44 83 0.53
45 75 0.47
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (44 bp):
ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCT
Found at i:86520686 original size:89 final size:89
Alignment explanation
Indices: 86520551--86520768 Score: 303
Period size: 89 Copynumber: 2.4 Consensus size: 89
86520541 AGTCACCGTA
* * * *
86520551 ACAAATCTTATCTCCTTTAAGTTGCAGAAGAGCAGATTGAAAATAGCGAATCTTATCT-CTATGA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATCTCCT-TGA
86520615 AGTTGCAGTAGAACAGATTGAAGCT
65 AGTTGCAGTAGAACAGATTGAAGCT
* * * *
86520640 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAGCAAATCTTATCTCCTTGAA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATCTCCTTGAA
* * *
86520705 GTTGTAGTGGAGCAGATTGAAGCT
66 GTTGCAGTAGAACAGATTGAAGCT
**
86520729 ACAAATCTTATCTTGTTGAAGTTGCAGTAGAGCAGACTGA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGA
86520769 CGCGACAAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 110 0.98
90 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (89 bp):
ACAAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATCTCCTTGAA
GTTGCAGTAGAACAGATTGAAGCT
Found at i:86520964 original size:44 final size:44
Alignment explanation
Indices: 86520873--86520965 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
86520863 AGCTACAAGT
* * * * *
86520873 TACAAATCTTATCTCCATGAAGTTGTAGTGGAGCAGATTGAAGC
1 TACAAATCTTATCTCCATGAAGTTGCAGTAGAGCAAATTAAAAC
* *
86520917 TACAAGTCTTATCTTCCA-GAAGTTGCAGTAGAGTAAATTAAAAC
1 TACAAATCTTATC-TCCATGAAGTTGCAGTAGAGCAAATTAAAAC
86520961 TACAA
1 TACAA
86520966 TTCCTATACC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 37 0.90
45 4 0.10
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (44 bp):
TACAAATCTTATCTCCATGAAGTTGCAGTAGAGCAAATTAAAAC
Found at i:86523552 original size:25 final size:25
Alignment explanation
Indices: 86523516--86523564 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
86523506 CCTACATTCT
*
86523516 TGGATTTTGTAGACTAAAAATTATA
1 TGGATTTCGTAGACTAAAAATTATA
86523541 TGGATTTCGTAGACTAAAAATTAT
1 TGGATTTCGTAGACTAAAAATTAT
86523565 CATTTTAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (25 bp):
TGGATTTCGTAGACTAAAAATTATA
Found at i:86529779 original size:40 final size:38
Alignment explanation
Indices: 86529679--86529779 Score: 103
Period size: 40 Copynumber: 2.6 Consensus size: 38
86529669 CCTTGCACAC
* *
86529679 CAACTCTATCCAACCCAACACACTATGTGGGGAAAAAAT
1 CAAC-CTATCCAACCCTACACACTATATGGGGAAAAAAT
* * * * * *
86529718 CGACCCATCTATCCCTGCACACTAAGTATGGGGATAAAAT
1 CAACCTATCCAACCCTACACACT-A-TATGGGGAAAAAAT
86529758 CAACCTATCCAACCCTACACAC
1 CAACCTATCCAACCCTACACAC
86529780 CATAGAGTAC
Statistics
Matches: 47, Mismatches: 13, Indels: 3
0.75 0.21 0.05
Matches are distributed among these distances:
38 14 0.30
39 4 0.09
40 29 0.62
ACGTcount: A:0.37, C:0.33, G:0.12, T:0.19
Consensus pattern (38 bp):
CAACCTATCCAACCCTACACACTATATGGGGAAAAAAT
Found at i:86538380 original size:45 final size:45
Alignment explanation
Indices: 86538330--86538415 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
86538320 CCAAAACATG
*
86538330 TGTCACATATATAACT-AAGTCAGACCACAACTCAATGAGTTTGGA
1 TGTCACATATATAA-TGAACTCAGACCACAACTCAATGAGTTTGGA
*
86538375 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTT
1 TGTCACATATATAATGAACTCAGACCACAACTCAATGAGTT
86538416 CAGATTACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (45 bp):
TGTCACATATATAATGAACTCAGACCACAACTCAATGAGTTTGGA
Found at i:86542421 original size:102 final size:102
Alignment explanation
Indices: 86542279--86542477 Score: 319
Period size: 102 Copynumber: 2.0 Consensus size: 102
86542269 TCCATTTTTT
* * * *
86542279 CAAAAAATATTTAATATTTCACAACTCAACATGTTTACTGTGACTGAATGGTTTATTTTTATTT-
1 CAAAAAATATTTAATACTTCACAACTCAACATATTCACTGTGACTGAATGGTTTATTTTCATTTC
86542343 TCAGGGTTCAAAACAGCTTAAAAACATAAACTCATTTC
66 T-AGGGTTCAAAACAGCTTAAAAACATAAACTCATTTC
* *
86542381 CAAACAATATTTAGTACTTCACAACTCAACATATTCACTGTGACTGAATGGTTTATTTTCATTTC
1 CAAAAAATATTTAATACTTCACAACTCAACATATTCACTGTGACTGAATGGTTTATTTTCATTTC
*
86542446 TAGGGTTCAAAATAGCTTAAAAACATAAACTC
66 TAGGGTTCAAAACAGCTTAAAAACATAAACTC
86542478 GTTCTTTTAA
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 88 0.99
103 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (102 bp):
CAAAAAATATTTAATACTTCACAACTCAACATATTCACTGTGACTGAATGGTTTATTTTCATTTC
TAGGGTTCAAAACAGCTTAAAAACATAAACTCATTTC
Found at i:86547104 original size:2 final size:2
Alignment explanation
Indices: 86547097--86547124 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86547087 CTCTTCTTTA
86547097 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
86547125 TCCACTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:86547573 original size:19 final size:19
Alignment explanation
Indices: 86547551--86547589 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
86547541 TCATAAGTTT
86547551 ATTTTTATTTCTATGCATC
1 ATTTTTATTTCTATGCATC
86547570 ATTTTTATTTCTATGCATC
1 ATTTTTATTTCTATGCATC
86547589 A
1 A
86547590 ACAAAACGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.56
Consensus pattern (19 bp):
ATTTTTATTTCTATGCATC
Found at i:86550232 original size:18 final size:18
Alignment explanation
Indices: 86550209--86550243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86550199 AAACCCATTA
*
86550209 TTATTTTCGTTTATTTAT
1 TTATTTTAGTTTATTTAT
*
86550227 TTATTTTATTTTATTTA
1 TTATTTTAGTTTATTTA
86550244 CCTTTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
TTATTTTAGTTTATTTAT
Found at i:86550319 original size:3 final size:3
Alignment explanation
Indices: 86550311--86550362 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
86550301 ATCTATTCCG
*
86550311 TTA TTA TTA GTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86550358 TTA TT
1 TTA TT
86550363 GTGTATTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:86555483 original size:49 final size:49
Alignment explanation
Indices: 86555428--86555718 Score: 461
Period size: 47 Copynumber: 6.1 Consensus size: 49
86555418 ATGTACAAGA
86555428 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
86555477 TATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
86555524 TATGTATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
86555573 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
86555622 TATG--TATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA--G
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * *
86555667 TATATATATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTG
86555716 TAT
1 TAT
86555719 AACTGTGATA
Statistics
Matches: 225, Mismatches: 10, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
45 4 0.02
47 117 0.52
48 3 0.01
49 101 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:86555558 original size:40 final size:42
Alignment explanation
Indices: 86555512--86555654 Score: 112
Period size: 49 Copynumber: 3.2 Consensus size: 42
86555502 CAATGTGATG
86555512 AATGTGAA-G-GTGTATGTATATGTGATAAAGCCGAATGGCC
1 AATGTGAATGAGTGTATGTATATGTGATAAAGCCGAATGGCC
*
86555552 AATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCC
1 AA--TG-TGAA--TG--AGTGTATGTATATGTGATAAAGCCGAATGGCC
* * *
86555601 AATGTG-ATGAATGTGAAAGTGTATGTATGTGATAAGGCCAAATGGCC
1 AATGTGAATG-A-GTG-TA-TGTA--TATGTGATAAAGCCGAATGGCC
86555648 AATGTGA
1 AATGTGA
86555655 TGAATGTGAA
Statistics
Matches: 85, Mismatches: 3, Indels: 22
0.77 0.03 0.20
Matches are distributed among these distances:
40 2 0.02
42 4 0.05
43 9 0.11
44 1 0.01
45 5 0.06
46 3 0.04
47 29 0.34
49 32 0.38
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (42 bp):
AATGTGAATGAGTGTATGTATATGTGATAAAGCCGAATGGCC
Found at i:86558900 original size:19 final size:19
Alignment explanation
Indices: 86558848--86558892 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
86558838 CGCCTCTTTT
* *
86558848 TGCATT-CATTGCATTCATC
1 TGCATTACATTTCA-TCATA
86558867 TGCATTACATTTCATCATA
1 TGCATTACATTTCATCATA
86558886 TGCATTA
1 TGCATTA
86558893 AGTTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (19 bp):
TGCATTACATTTCATCATA
Found at i:86567066 original size:44 final size:44
Alignment explanation
Indices: 86567000--86567306 Score: 321
Period size: 44 Copynumber: 6.8 Consensus size: 44
86566990 CATCGTGGCG
*
86567000 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * *
86567044 AACCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * *
86567088 AATCTTATTTCTCTAAAGTTGCAATGGAGCAGATT-AGAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGCCACA
* *
86567132 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG-AGCCCATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACA
** * ***
86567176 AATCTTATCTCCCTGAAGTTATAGTGGAGCATATTGAAGATGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
* * * *
86567220 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAATCTACGAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-----ACA
* *
86567271 AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
86567307 TAGATGTGAG
Statistics
Matches: 216, Mismatches: 36, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
43 3 0.01
44 178 0.82
45 2 0.01
51 33 0.15
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA
Found at i:86567192 original size:132 final size:131
Alignment explanation
Indices: 86567000--86567255 Score: 354
Period size: 132 Copynumber: 1.9 Consensus size: 131
86566990 CATCGTGGCG
* * * *
86567000 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTA
* *
86567065 CAGTGGAGCAGATTGAAGCCAT-AAATCTTATTTCTCTAAAGTTGCAATGGAGCAGATTAGAGCC
66 CAGTGGAGCAGATTGAAG--ATCAAATCTTATTTCCCTAAAGTTGCAATGGAACAGATTAGAGCC
86567129 ACA
129 ACA
* *
86567132 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG-AGCCCATAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-CCACAAACCTTATCTCCCTGAAGTT
* * * *
86567196 ATAGTGGAGCATATTGAAGATGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTA
65 ACAGTGGAGCAGATTGAAGAT-CAAATCTTATTTCCCTAAAGTTGCAATGGAACAGATTA
86567256 AATCTACGAG
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
130 2 0.02
131 2 0.02
132 105 0.96
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (131 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTA
CAGTGGAGCAGATTGAAGATCAAATCTTATTTCCCTAAAGTTGCAATGGAACAGATTAGAGCCAC
A
Found at i:86568855 original size:18 final size:18
Alignment explanation
Indices: 86568832--86568866 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86568822 AAGTCCATTA
*
86568832 TTATTTTCGTTTATTTAT
1 TTATTTTAGTTTATTTAT
*
86568850 TTATTTTATTTTATTTA
1 TTATTTTAGTTTATTTA
86568867 GCTTTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
TTATTTTAGTTTATTTAT
Found at i:86568942 original size:3 final size:3
Alignment explanation
Indices: 86568934--86568993 Score: 111
Period size: 3 Copynumber: 19.7 Consensus size: 3
86568924 ATCTATTCCG
86568934 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86568982 TTA TTA TCTA TT
1 TTA TTA T-TA TT
86568994 GCATTTATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:86570685 original size:2 final size:2
Alignment explanation
Indices: 86570680--86570705 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86570670 TATAATTAAA
86570680 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
86570706 GTCAAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86573084 original size:24 final size:24
Alignment explanation
Indices: 86573057--86573182 Score: 137
Period size: 24 Copynumber: 5.2 Consensus size: 24
86573047 TAGCCCGGCT
*
86573057 TTTGGTGCGACAAGCACCCCTGCG
1 TTTGGTGCCACAAGCACCCCTGCG
* * * *
86573081 TTTGGCGCCTCAAGCACTCCAG-G
1 TTTGGTGCCACAAGCACCCCTGCG
86573104 TTTCGGTGCCACAAGCACCCCTGCG
1 TTT-GGTGCCACAAGCACCCCTGCG
* * * *
86573129 TTTGGTGCCTCAAGTACCCCCGCA
1 TTTGGTGCCACAAGCACCCCTGCG
* *
86573153 TTTGGTGCCACGAGCACCCCTGCA
1 TTTGGTGCCACAAGCACCCCTGCG
86573177 TTTGGT
1 TTTGGT
86573183 TCAACTGGAA
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
23 4 0.05
24 75 0.90
25 4 0.05
ACGTcount: A:0.16, C:0.35, G:0.25, T:0.24
Consensus pattern (24 bp):
TTTGGTGCCACAAGCACCCCTGCG
Found at i:86573160 original size:48 final size:47
Alignment explanation
Indices: 86573057--86573182 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 47
86573047 TAGCCCGGCT
* * * *
86573057 TTTGGTGCGACAAGCACCCCTGCGTTTGGCGCCTCAAGCACTCCAGG
1 TTTGGTGCCACAAGCACCCCTGCGTTTGGTGCCTCAAGCACCCCAGA
* *
86573104 TTTCGGTGCCACAAGCACCCCTGCGTTTGGTGCCTCAAGTACCCCCGCA
1 TTT-GGTGCCACAAGCACCCCTGCGTTTGGTGCCTCAAGCACCCCAG-A
* *
86573153 TTTGGTGCCACGAGCACCCCTGCATTTGGT
1 TTTGGTGCCACAAGCACCCCTGCGTTTGGT
86573183 TCAACTGGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
47 3 0.04
48 63 0.91
49 3 0.04
ACGTcount: A:0.16, C:0.35, G:0.25, T:0.24
Consensus pattern (47 bp):
TTTGGTGCCACAAGCACCCCTGCGTTTGGTGCCTCAAGCACCCCAGA
Found at i:86573322 original size:24 final size:23
Alignment explanation
Indices: 86573282--86573364 Score: 57
Period size: 24 Copynumber: 3.6 Consensus size: 23
86573272 ATCAAGCTCA
*
86573282 CCTGCGTTTGGCA-CTTCCGCAACT
1 CCTGCTTTTGG-AGCTT-CGCAACT
*
86573306 CCTGCTTTTGGAGCTT--CAAGT
1 CCTGCTTTTGGAGCTTCGCAACT
* * *
86573327 TCTGCTTTTGGGGGTTCAAGC-ACT
1 CCTGCTTTTGGAGCTTC--GCAACT
86573351 CCTGCTTTTGGAGC
1 CCTGCTTTTGGAGC
86573365 ATCTTCTACT
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
21 17 0.38
23 1 0.02
24 26 0.58
25 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.25, T:0.35
Consensus pattern (23 bp):
CCTGCTTTTGGAGCTTCGCAACT
Found at i:86573333 original size:21 final size:22
Alignment explanation
Indices: 86573304--86573364 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 22
86573294 ACTTCCGCAA
86573304 CTCCTGCTTTTGGAGCTTCAAG
1 CTCCTGCTTTTGGAGCTTCAAG
* * *
86573326 -TTCTGCTTTTGGGGGTTCAAG
1 CTCCTGCTTTTGGAGCTTCAAG
86573347 CACTCCTGCTTTTGGAGC
1 --CTCCTGCTTTTGGAGC
86573365 ATCTTCTACT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 18 0.60
24 12 0.40
ACGTcount: A:0.11, C:0.25, G:0.26, T:0.38
Consensus pattern (22 bp):
CTCCTGCTTTTGGAGCTTCAAG
Found at i:86580610 original size:26 final size:26
Alignment explanation
Indices: 86580584--86580634 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
86580574 ATGTATGTTT
*
86580584 AATAATATTAAAAAATATAATATTTTA
1 AATAATATTAAAAAA-ATAAAATTTTA
* *
86580611 AATATTTTTAAAAAAATAAAATTT
1 AATAATATTAAAAAAATAAAATTT
86580635 ATTATCAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
AATAATATTAAAAAAATAAAATTTTA
Found at i:86584363 original size:2 final size:2
Alignment explanation
Indices: 86584356--86584387 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
86584346 AAGAAGGTCT
86584356 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
86584388 CGTTCTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:86587148 original size:29 final size:30
Alignment explanation
Indices: 86587116--86587172 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
86587106 AATTATTTAT
86587116 ATTTAATAATATAATAAATTAT-TAATACA
1 ATTTAATAATATAATAAATTATATAATACA
* * *
86587145 ATTTATTATTTTAATAAATTATATAATA
1 ATTTAATAATATAATAAATTATATAATA
86587173 TTACGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (30 bp):
ATTTAATAATATAATAAATTATATAATACA
Found at i:86587354 original size:23 final size:24
Alignment explanation
Indices: 86587311--86587359 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
86587301 ATTCAATAAT
*
86587311 AAAAGTTTTATATTATAAAATATG
1 AAAAGTTTTATAATATAAAATATG
86587335 AAAA-TTTTAATAATAT-AAATATG
1 AAAAGTTTT-ATAATATAAAATATG
86587358 AA
1 AA
86587360 TGTTTAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (24 bp):
AAAAGTTTTATAATATAAAATATG
Found at i:86591087 original size:26 final size:26
Alignment explanation
Indices: 86591056--86591163 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86591046 TGAAATGCCC
*
86591056 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
86591082 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
86591108 ATCATGAAACATTGACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86591134 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86591160 ATCA
1 ATCA
86591164 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86610899 original size:40 final size:40
Alignment explanation
Indices: 86610772--86610901 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86610762 ATGCTGGAAA
* *
86610772 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
86610812 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86610852 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86610892 TTATATCCGG
1 TTATATCCGG
86610902 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86618940 original size:40 final size:40
Alignment explanation
Indices: 86618813--86618942 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86618803 ATGCTGGAAA
* *
86618813 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
86618853 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86618893 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86618933 TTATATCCGG
1 TTATATCCGG
86618943 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86621284 original size:43 final size:43
Alignment explanation
Indices: 86621127--86621285 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
86621117 TGTGTGTTAT
* * *
86621127 CGTGTAAGACCATGTCTGGGATGCTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATATGA-TTA
* * * * *
86621171 CGTGTAAGACTACGTTTGGGACGTTAGTATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTA
* ** * *
86621213 TGTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTTATTA
1 CGTGTAAGACCAC-GTCTGGGACGTTGGCATCGATATATGATTA
*
86621256 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
86621286 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 36 0.40
44 26 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTA
Found at i:86621867 original size:23 final size:23
Alignment explanation
Indices: 86621812--86621867 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
86621802 ATATTTAGCC
*
86621812 ATATGATATGGCTTGGTTTTGGT
1 ATATGATATGGCTTGATTTTGGT
** *
86621835 -TGATCCTATGGTTTGATTTTGGT
1 AT-ATGATATGGCTTGATTTTGGT
86621858 ATATGATATG
1 ATATGATATG
86621868 TGATGCAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.20, C:0.05, G:0.27, T:0.48
Consensus pattern (23 bp):
ATATGATATGGCTTGATTTTGGT
Found at i:86624105 original size:18 final size:17
Alignment explanation
Indices: 86624071--86624110 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
86624061 TGTTTTTGAG
*
86624071 ATAGTTTTGTTATTGTA
1 ATAGTTTTGTTAGTGTA
*
86624088 TTAGTTTCTGTTAGTGTA
1 ATAGTTT-TGTTAGTGTA
86624106 ATAGT
1 ATAGT
86624111 GGGATTTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.23, C:0.03, G:0.20, T:0.55
Consensus pattern (17 bp):
ATAGTTTTGTTAGTGTA
Found at i:86624975 original size:18 final size:19
Alignment explanation
Indices: 86624929--86624984 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
86624919 GGGGTAGGAG
* *
86624929 TCTGTATATCTAAAATTGAA
1 TCTGT-TATCTGAATTTGAA
86624949 TCTGTTATCTGAATTTGAA
1 TCTGTTATCTGAATTTGAA
*
86624968 TCTG-TATCTGTATTTGA
1 TCTGTTATCTGAATTTGA
86624985 CTGTGCATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 12 0.36
19 16 0.48
20 5 0.15
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (19 bp):
TCTGTTATCTGAATTTGAA
Found at i:86632530 original size:17 final size:17
Alignment explanation
Indices: 86632508--86632542 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86632498 TATTTATCCT
86632508 TTATTTTT-TTAATTTTC
1 TTATTTTTGTT-ATTTTC
86632525 TTATTTTTGTTATTTTC
1 TTATTTTTGTTATTTTC
86632542 T
1 T
86632543 AAATTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (17 bp):
TTATTTTTGTTATTTTC
Found at i:86634130 original size:25 final size:27
Alignment explanation
Indices: 86634102--86634162 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 27
86634092 AAATACAACT
86634102 TAACAA-G-CAAATGCCTCTAAAATAA
1 TAACAACGACAAATGCCTCTAAAATAA
*
86634127 TAACAAAACTGACAAATGCCTTTAAAATAA
1 TAAC--AAC-GACAAATGCCTCTAAAATAA
86634157 TAACAA
1 TAACAA
86634163 AATTAACAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 4 0.13
27 2 0.07
28 2 0.07
29 1 0.03
30 21 0.70
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (27 bp):
TAACAACGACAAATGCCTCTAAAATAA
Found at i:86634226 original size:22 final size:22
Alignment explanation
Indices: 86634201--86634243 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
86634191 TATCCAAACA
86634201 ATAAGAATAAAATAGTAGCAAC
1 ATAAGAATAAAATAGTAGCAAC
* * *
86634223 ATAATAGTAAAATGGTAGCAA
1 ATAAGAATAAAATAGTAGCAA
86634244 AATGGGGGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.21
Consensus pattern (22 bp):
ATAAGAATAAAATAGTAGCAAC
Found at i:86638282 original size:42 final size:43
Alignment explanation
Indices: 86638178--86638295 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 43
86638168 TACCGTGTCA
* * * **
86638178 ATGCCATATCCCAGATATGGTTTTACATGAAAT-ATCATATTG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCATCATAGCG
* * * *
86638220 ACGCCATGTCCCTGACATGGTCTTATACGAAATCAT-ATAGCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCATCATAGCG
* *
86638262 ATGCCAAATCCCAGATATGGTCTTATACGGAATC
1 ATGCCATATCCCAGATATGGTCTTATACGAAATC
86638296 TCGGTAGTCC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATCATCATAGCG
Found at i:86638644 original size:32 final size:32
Alignment explanation
Indices: 86638608--86638672 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
86638598 CGAACAATAT
86638608 GAAAACTTTGAATAATTTCAATGCAAACAAGG
1 GAAAACTTTGAATAATTTCAATGCAAACAAGG
86638640 GAAAACTTTGAATAATTTCAATGCAAACAAGG
1 GAAAACTTTGAATAATTTCAATGCAAACAAGG
86638672 G
1 G
86638673 CATACGCTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (32 bp):
GAAAACTTTGAATAATTTCAATGCAAACAAGG
Found at i:86640021 original size:48 final size:48
Alignment explanation
Indices: 86639903--86640280 Score: 402
Period size: 48 Copynumber: 7.8 Consensus size: 48
86639893 GTAAGTTGCT
** * *
86639903 GATGCCATGTCCCCGACATGGTCTTACACTGGCTCTCATATATTGATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATA--GATGCC
* * * * *
86639953 AATGCCATGTTCCAAACATGGTCTTACACTAGCAT-ACATGTTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGC-TCACATATAGATGCC
* * *
86640001 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAGATGCC
* * * *
86640049 GATGCCATGTTCCAAACATGATCTTACACTAGC-CTACATGTCGA-GACC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTC-ACATATAGATG-CC
* * * *
86640097 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAGATGCC
* * * * *
86640145 GATTCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAGATGCC
* * * *
86640193 GATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATATAAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAGATGCC
* * *
86640241 GATGCCGTGTTCCAAACATGGTCTTACACTAGCTCTCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
86640281 ACCTAGTATC
Statistics
Matches: 268, Mismatches: 54, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
47 3 0.01
48 230 0.86
49 2 0.01
50 32 0.12
51 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAGATGCC
Found at i:86640087 original size:96 final size:96
Alignment explanation
Indices: 86639903--86640273 Score: 582
Period size: 96 Copynumber: 3.8 Consensus size: 96
86639893 GTAAGTTGCT
* * * *
86639903 GATGCCATGTCCCCGACATGGTCTTACACTGGCTCTCATATATTGATGCCAATGCCATGTTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTCCAA
* *
86639968 ACATGGTCTTACACTAGCATACATGTTGAGGCC
64 ACATGGTCTTACACTAGCCTACATGTCGAGGCC
86640001 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAAC
* *
86640066 ATGATCTTACACTAGCCTACATGTCGAGACC
66 ATGGTCTTACACTAGCCTACATGTCGAGGCC
* *
86640097 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATTCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAAC
* *
86640162 ATGGTCTTACACT-GGCTCACATATCGAGGCC
66 ATGGTCTTACACTAGCCT-ACATGTCGAGGCC
* *
86640193 GATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATATAAATGCCGATGCCGTGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAAC
86640258 ATGGTCTTACACTAGC
66 ATGGTCTTACACTAGC
86640274 TCTCATAACC
Statistics
Matches: 252, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
95 3 0.01
96 208 0.83
97 1 0.00
98 40 0.16
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCCTACATGTCGAGGCC
Found at i:86653794 original size:40 final size:41
Alignment explanation
Indices: 86653750--86653975 Score: 270
Period size: 40 Copynumber: 5.7 Consensus size: 41
86653740 GCTACTCGTT
* * *
86653750 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
86653790 CAAATGCCTTCGGGA-CTTATCCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
86653830 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86653870 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
86653910 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
*
86653951 CAGA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
86653976 CATCATTCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.92
41 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:86658636 original size:68 final size:69
Alignment explanation
Indices: 86658488--86658645 Score: 171
Period size: 68 Copynumber: 2.3 Consensus size: 69
86658478 CAAGCCAATT
* * *
86658488 TATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
**
86658553 TTTA
66 CATA
* * *
86658557 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCT
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCT
86658618 ACTACATA
63 AC-ACATA
86658626 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
86658646 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 8 0.11
70 6 0.08
71 25 0.33
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (69 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
CATA
Found at i:86663453 original size:40 final size:40
Alignment explanation
Indices: 86663408--86663574 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86663398 CGGAATATAA
86663408 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86663448 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86663488 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86663528 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86663567 CCGGATAT
1 CCGGATAT
86663575 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86671438 original size:40 final size:40
Alignment explanation
Indices: 86671393--86671560 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86671383 CGGAATATAA
86671393 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86671433 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86671473 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
86671513 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86671553 CCGGATAT
1 CCGGATAT
86671561 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86676342 original size:27 final size:27
Alignment explanation
Indices: 86676310--86676400 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
86676300 GGGCATAACC
* *
86676310 ATCATTCTACCATACAGGGGTATTATG
1 ATCATTTTACCATACAGGGGTATTACG
* * *
86676337 GTCATTTTACCCTACAGGGGCATTACG
1 ATCATTTTACCATACAGGGGTATTACG
* *
86676364 ATCATTTTA-CACTACAAGGGTATTTCG
1 ATCATTTTACCA-TACAGGGGTATTACG
*
86676391 ATAATTTTAC
1 ATCATTTTAC
86676401 TAATATTGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCATACAGGGGTATTACG
Found at i:86679124 original size:31 final size:31
Alignment explanation
Indices: 86679089--86679152 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86679079 CCTTTTCATG
86679089 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
86679120 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
86679151 TT
1 TT
86679153 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:86679395 original size:24 final size:24
Alignment explanation
Indices: 86679344--86679462 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
86679334 GCTTTATCAT
*
86679344 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
86679369 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
86679393 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
86679416 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
86679440 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86679463 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86679423 original size:47 final size:48
Alignment explanation
Indices: 86679344--86679462 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
86679334 GCTTTATCAT
*
86679344 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
86679393 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
86679440 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86679463 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:86679537 original size:20 final size:20
Alignment explanation
Indices: 86679512--86679550 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86679502 TATGATTACA
86679512 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
*
86679532 TCATGTGCATCTCATACAT
1 TCATGTGCATATCATACAT
86679551 ACCATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:86679626 original size:25 final size:25
Alignment explanation
Indices: 86679594--86679641 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86679584 ATACATAAAC
* * *
86679594 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86679619 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86679642 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86684140 original size:31 final size:31
Alignment explanation
Indices: 86684105--86684168 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86684095 CCTTTTCATG
86684105 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
86684136 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
86684167 TT
1 TT
86684169 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:86684411 original size:24 final size:24
Alignment explanation
Indices: 86684360--86684478 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
86684350 GCTTTATCAT
*
86684360 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
86684385 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
86684409 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
86684432 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
86684456 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86684479 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86684439 original size:47 final size:48
Alignment explanation
Indices: 86684360--86684478 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
86684350 GCTTTATCAT
*
86684360 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
86684409 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
86684456 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86684479 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:86684553 original size:20 final size:20
Alignment explanation
Indices: 86684528--86684588 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
86684518 TTATGATTAC
86684528 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
86684548 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
86684568 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
86684588 A
1 A
86684589 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86684663 original size:25 final size:25
Alignment explanation
Indices: 86684631--86684678 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86684621 ATACATAAAC
* * *
86684631 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86684656 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86684679 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86687417 original size:37 final size:37
Alignment explanation
Indices: 86687376--86687495 Score: 134
Period size: 37 Copynumber: 3.2 Consensus size: 37
86687366 TGTCCCTGAC
* * * *
86687376 ATGGTCTTACATGGGATCACAATGCCATAGCCCAGTT
1 ATGGTCTTACATGGCATTACGATGCCATAGCCTAGTT
* *
86687413 ATGGTCTTACATGTCATTATGATGCCATAGCCTA-TCT
1 ATGGTCTTACATGGCATTACGATGCCATAGCCTAGT-T
* * *
86687450 ATGGTCTTACACGGTATTACGATGCCATAGCCTAGCT
1 ATGGTCTTACATGGCATTACGATGCCATAGCCTAGTT
*
86687487 ATAGTCTTA
1 ATGGTCTTA
86687496 ATTCGTACTC
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
36 1 0.01
37 68 0.99
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (37 bp):
ATGGTCTTACATGGCATTACGATGCCATAGCCTAGTT
Found at i:86691583 original size:40 final size:40
Alignment explanation
Indices: 86691498--86691648 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
86691488 AATTGAATGA
* * * **
86691498 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
86691538 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
86691579 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
86691618 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
86691649 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:86691662 original size:40 final size:40
Alignment explanation
Indices: 86691535--86691664 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
86691525 ATGCTGGAAA
* * *
86691535 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
86691575 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
86691615 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
86691655 TTATATCCGG
1 TTATATCCGG
86691665 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:86694246 original size:26 final size:25
Alignment explanation
Indices: 86694198--86694249 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
86694188 TAACTCATAA
86694198 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAA-TAGTCCCT
86694224 ATTTCACATTTTCATCAAA-AGTCCCT
1 ATTTCACA-TTTCA-CAAATAGTCCCT
86694250 TAGCAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.62
27 5 0.21
28 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTCACATTTCACAAATAGTCCCT
Found at i:86700975 original size:42 final size:42
Alignment explanation
Indices: 86700926--86701184 Score: 247
Period size: 42 Copynumber: 6.2 Consensus size: 42
86700916 CTAGCACCAC
*
86700926 AGTGCATCATTGGATAAATTGAAG-GAAATATACTAGCACATA
1 AGTGCATCATTAGATAAATTGAAGCG-AATATACTAGCACATA
* * *
86700968 AGTGCATCATTAGACAAGTTG-AGAC-AATTATACTGGCACATA
1 AGTGCATCATTAGATAAATTGAAG-CGAA-TATACTAGCACATA
* * *** *
86701010 AGTGCATCATTGGATGAACCAAAGCGATTATACTAGCACATA
1 AGTGCATCATTAGATAAATTGAAGCGAATATACTAGCACATA
* ** * * *
86701052 AGTGTATCACCAGATGAATTGAATCAAATATACTAGCACATA
1 AGTGCATCATTAGATAAATTGAAGCGAATATACTAGCACATA
* * *
86701094 AGTGCATCATTAGCTAAAATGAAGCGAATATACTGGCACATA
1 AGTGCATCATTAGATAAATTGAAGCGAATATACTAGCACATA
* * * * *
86701136 AGTGCATCATGAGCTAAACTAAAGCGAATATACTGGCACATA
1 AGTGCATCATTAGATAAATTGAAGCGAATATACTAGCACATA
86701178 AGT-CATC
1 AGTGCATC
86701185 GACTAAACCG
Statistics
Matches: 177, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
41 8 0.05
42 166 0.94
43 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (42 bp):
AGTGCATCATTAGATAAATTGAAGCGAATATACTAGCACATA
Found at i:86701141 original size:126 final size:126
Alignment explanation
Indices: 86700942--86701180 Score: 333
Period size: 126 Copynumber: 1.9 Consensus size: 126
86700932 TCATTGGATA
* **
86700942 AATTGAAGGAAATATACTAGCACATAAGTGCATCATTAGACAAGTTGAGACAATTATACTGGCAC
1 AATTGAAGCAAATATACTAGCACATAAGTGCATCATTAGACAAAATGAGACAATTATACTGGCAC
* *
86701007 ATAAGTGCATCATTG-GATGAACCAAAGCGATTATACTAGCACATAAGTGTATCACCAGATG
66 ATAAGTGCATCA-TGAGATAAACCAAAGCGAATATACTAGCACATAAGTGTATCACCAGATG
*
86701068 AATTGAATCAAATATACTAGCACATAAGTGCATCATTAG-CTAAAATGA-AGCGAA-TATACTGG
1 AATTGAAGCAAATATACTAGCACATAAGTGCATCATTAGAC-AAAATGAGA-C-AATTATACTGG
* * *
86701130 CACATAAGTGCATCATGAGCTAAACTAAAGCGAATATACTGGCACATAAGT
63 CACATAAGTGCATCATGAGATAAACCAAAGCGAATATACTAGCACATAAGT
86701181 CATCGACTAA
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
125 4 0.04
126 94 0.94
127 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (126 bp):
AATTGAAGCAAATATACTAGCACATAAGTGCATCATTAGACAAAATGAGACAATTATACTGGCAC
ATAAGTGCATCATGAGATAAACCAAAGCGAATATACTAGCACATAAGTGTATCACCAGATG
Found at i:86702817 original size:27 final size:27
Alignment explanation
Indices: 86702787--86702854 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
86702777 TAGGGGCATG
* *
86702787 TCGATCATTTTACACTACAAGGGTATT
1 TCGATAATTTTACACTACAACGGTATT
86702814 TCGATAATTTTACACTACAACGGTATT
1 TCGATAATTTTACACTACAACGGTATT
86702841 TCGATAATTTTACA
1 TCGATAATTTTACA
86702855 AATCGAGGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (27 bp):
TCGATAATTTTACACTACAACGGTATT
Found at i:86702875 original size:27 final size:27
Alignment explanation
Indices: 86702806--86703280 Score: 526
Period size: 27 Copynumber: 17.7 Consensus size: 27
86702796 TTACACTACA
* * *
86702806 AGGGTATTTCGATAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* *
86702833 ACGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86702860 AGGGTGTTTTGGTAATTTTACAAAACG
1 AGGGTATTTCGGTAATTTTACAAATCG
86702887 AGGGTATTTCGGTAATTTTACAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
*
86702914 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86702941 AAGGTGTTTCGGTAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86702968 AGGGTGTTTCGATAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86702995 AGGGTGTTTCAGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703022 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
86703048 AGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703075 GGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703102 AAGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86703129 AGGGTGTTTCGATAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
86703156 AGGGTGTTTCAGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703183 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
86703209 AGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703236 GGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
86703263 AAGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
86703281 CTCTTTATTA
Statistics
Matches: 392, Mismatches: 51, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
26 49 0.12
27 341 0.87
28 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:86703087 original size:161 final size:161
Alignment explanation
Indices: 86702806--86703280 Score: 747
Period size: 161 Copynumber: 2.9 Consensus size: 161
86702796 TTACACTACA
* * * * * * *
86702806 AGGGTATTTCGATAATTTTACACTA-CAACGGTATTTC-GATAATTTTACAAATCGAGGGTGTTT
1 AGGGTGTTTCGATAATTTTACA-AACCGAGGGTGTTTCAG-TAATTTCACAAATCGAGGGTATTT
** * * ** * *
86702869 TGGTAATTTTACAAAACGAGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTA
64 CAGTAATTTCAC-AATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTA
86702934 CAAATTGAAGGTGTTTCGGTAATTTTAAAAATCG
128 CAAATTGAAGGTGTTTCGGTAATTTTAAAAATCG
86702968 AGGGTGTTTCGATAATTTTACAAACCGAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTCA
1 AGGGTGTTTCGATAATTTTACAAACCGAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTCA
86703033 GTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAA
66 GTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAA
*
86703098 ATTGAAGGTGTTTCGGTAATTTTACAAATCG
131 ATTGAAGGTGTTTCGGTAATTTTAAAAATCG
86703129 AGGGTGTTTCGATAATTTTACAAACCGAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTCA
1 AGGGTGTTTCGATAATTTTACAAACCGAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTCA
86703194 GTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAA
66 GTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAA
* *
86703259 ATTGAAGGTATTTCAGTAATTT
131 ATTGAAGGTGTTTCGGTAATTT
86703281 CTCTTTATTA
Statistics
Matches: 293, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
161 231 0.79
162 61 0.21
163 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (161 bp):
AGGGTGTTTCGATAATTTTACAAACCGAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTCA
GTAATTTCACAATCGAGGGTATTTCAATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAA
ATTGAAGGTGTTTCGGTAATTTTAAAAATCG
Found at i:86705887 original size:40 final size:40
Alignment explanation
Indices: 86705790--86706012 Score: 335
Period size: 40 Copynumber: 5.6 Consensus size: 40
86705780 TGGATGATAA
* * * * *
86705790 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACT-AGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
86705829 TCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
86705868 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
86705908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
86705948 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
86705988 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86706013 AGTGAGTAGC
Statistics
Matches: 170, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 25 0.15
39 12 0.07
40 131 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:86713993 original size:40 final size:40
Alignment explanation
Indices: 86713896--86714124 Score: 331
Period size: 40 Copynumber: 5.8 Consensus size: 40
86713886 TGGATGATAA
* * * * **
86713896 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
86713936 CC-GGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
86713974 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
86714014 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
86714054 CCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
86714093 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
86714125 AGCTATATCG
Statistics
Matches: 174, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 29 0.17
39 39 0.22
40 106 0.61
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:86714106 original size:119 final size:118
Alignment explanation
Indices: 86713896--86714124 Score: 327
Period size: 119 Copynumber: 1.9 Consensus size: 118
86713886 TGGATGATAA
* ** *
86713896 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCGGCAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAATCCGGCAAGTCCCGAAGGCAATTGTG
*
86713961 CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
66 CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAAT
* * *
86714014 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAATCC-GGC-AAGTCCCGAAGGCAATTG
* *
86714078 TGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
64 TGCGAGTTACT-AAATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
86714125 AGCTATATCG
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
118 36 0.37
119 56 0.57
120 6 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAATCCGGCAAGTCCCGAAGGCAATTGTG
CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAAT
Found at i:86714116 original size:79 final size:80
Alignment explanation
Indices: 86713896--86714124 Score: 324
Period size: 79 Copynumber: 2.9 Consensus size: 80
86713886 TGGATGATAA
* * * **
86713896 CCGGGCTAAGTCCCGAAGGC-ATCTGCGCTAGTGACTAGTTCC-GGC-AAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
86713958 GTGCGAGTTACTAAAT
65 GTGCGAGTTACTAAAT
*
86713974 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
86714039 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAT
* *
86714054 CCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AAATCCGGGCTAAGTCCCGAAGGCATTT
*
86714117 GAGCGAGT
65 GTGCGAGT
86714125 AGCTATATCG
Statistics
Matches: 137, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
78 34 0.25
79 57 0.42
80 46 0.34
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAAT
Found at i:86717952 original size:27 final size:27
Alignment explanation
Indices: 86717907--86717969 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
86717897 GCAAAAGAGG
* * *
86717907 CATTTTACCCTACAGGGGTATATCGGT
1 CATTTTACACTACAAGGGTATATCGAT
* *
86717934 CATTTTACACTATAAGGGTATTTCGAT
1 CATTTTACACTACAAGGGTATATCGAT
*
86717961 AATTTTACA
1 CATTTTACA
86717970 AATCGGGGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (27 bp):
CATTTTACACTACAAGGGTATATCGAT
Found at i:86718011 original size:27 final size:27
Alignment explanation
Indices: 86717948--86718230 Score: 319
Period size: 27 Copynumber: 10.7 Consensus size: 27
86717938 TTACACTATA
86717948 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
86717975 -GGGTGTTTCGGTAGTTCTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
86718001 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
86718028 AGGGTGTTTTGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86718055 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
86718082 AGGGTGTTTTGATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
86718109 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
86718136 AGGGTATTT-TAGTAATTTCAC-AATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
86718162 AGGGTATTTTGATAA-TTTACGAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86718188 GGGGTATTTCGGTAA---TACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
86718212 AGGGTATTTCAATAATTTT
1 AGGGTATTTCGATAATTTT
86718231 TCTTTATTAT
Statistics
Matches: 214, Mismatches: 35, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
24 20 0.09
25 4 0.02
26 55 0.26
27 135 0.63
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:86720968 original size:11 final size:11
Alignment explanation
Indices: 86720952--86720976 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86720942 CGAAGCTCAA
86720952 ATCGCAATAAT
1 ATCGCAATAAT
86720963 ATCGCAATAAT
1 ATCGCAATAAT
86720974 ATC
1 ATC
86720977 ATACATACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (11 bp):
ATCGCAATAAT
Found at i:86721495 original size:27 final size:27
Alignment explanation
Indices: 86721438--86721495 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
86721428 CAAAAGAGTC
* * * *
86721438 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATGTCGATA
* *
86721465 ATTTTACATTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
86721492 ATTT
1 ATTT
86721496 ACAAATCGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Found at i:86721524 original size:27 final size:27
Alignment explanation
Indices: 86721478--86721790 Score: 309
Period size: 27 Copynumber: 11.7 Consensus size: 27
86721468 TTACATTACA
86721478 AGGGTATTTCGATAA-TTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
86721504 GGGGTGTTTTGGTAGTTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86721531 AGGGAATTTCGATAATTTTATAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
* * *
86721558 AAGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
86721585 AGGGTGTTTAGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
86721612 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86721639 AGGG-AGTTTTTG-TAATTTCACAAATC-
1 AGGGTA--TTTCGATAATTTTACAAATCG
*
86721665 AGGGGTATTTCGATAATTTTACAAATCA
1 A-GGGTATTTCGATAATTTTACAAATCG
*
86721693 AGGGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
86721719 AGGGCATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86721746 GGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
86721773 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
86721791 CTCTTTATTA
Statistics
Matches: 234, Mismatches: 40, Indels: 25
0.78 0.13 0.08
Matches are distributed among these distances:
26 37 0.16
27 191 0.82
28 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:86737239 original size:49 final size:49
Alignment explanation
Indices: 86737183--86737276 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
86737173 TCTAGAAGGG
86737183 ATAAATAATGATAAGAGCGTAGATAGTGGAAGA-CTAAGTTTAGTAATGT
1 ATAAATAATGATAAGAGCGTAGATAGTGGAAGAGC-AAGTTTAGTAATGT
* *
86737232 ATAAATAATGTTAAGAGTGTAGATAGTGGAAGAGCAAGTTTAGTA
1 ATAAATAATGATAAGAGCGTAGATAGTGGAAGAGCAAGTTTAGTA
86737277 TTGCATAGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
49 41 0.98
50 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (49 bp):
ATAAATAATGATAAGAGCGTAGATAGTGGAAGAGCAAGTTTAGTAATGT
Found at i:86743750 original size:29 final size:29
Alignment explanation
Indices: 86743702--86743763 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
86743692 TTAAAATAAA
* * *
86743702 TATATATGTTATATATATTAAATTTAATG
1 TATATATGTAATATATATTAAAATGAATG
86743731 TATATATGTAATA-ATAATTAAAATGAATG
1 TATATATGTAATATAT-ATTAAAATGAATG
86743760 TATA
1 TATA
86743764 ATAAAAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (29 bp):
TATATATGTAATATATATTAAAATGAATG
Found at i:86746937 original size:47 final size:46
Alignment explanation
Indices: 86746807--86746926 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
86746797 ATAATTTCAC
* *
86746807 CCATAATGAACTCGGAACGCAACTCAACAAGCTCGGGTGTTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACAAGTTCGGATGTTCACAT
* *
86746853 CCATAATGAACTCGGAACACAACTCAACAAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACAAGTTCGGATG-TTCACAT
86746899 CCATAAGTGAACTCGGAACGCAACTCAA
1 CCATAA-TGAACTCGGAACGCAACTCAA
86746927 TGATTTCGGA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 45 0.67
47 22 0.33
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACAAGTTCGGATGTTCACAT
Found at i:86748643 original size:42 final size:42
Alignment explanation
Indices: 86748521--86748635 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 42
86748511 GTACCATACG
* *
86748521 AATGCCATATCCCAGATATGGTCTTACATGAAATCTCGTATC
1 AATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
* *
86748563 AATGCCAATATTCCAGCTATGGTCTTACAC-AAAGTCTCATATC
1 AATGCC-ATATCCCAGATATGGTCTTACACGAAA-TCTCATATC
* *
86748606 AATGCCATATCCCAAATATGATCTTACACG
1 AATGCCATATCCCAGATATGGTCTTACACG
86748636 TTATCTCAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (42 bp):
AATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
Found at i:86751841 original size:20 final size:20
Alignment explanation
Indices: 86751816--86751856 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
86751806 GTAACAATCG
86751816 CCGAAAATCCTTTGACAAAA
1 CCGAAAATCCTTTGACAAAA
86751836 CCGAAAATCCTTTGACAAAA
1 CCGAAAATCCTTTGACAAAA
86751856 C
1 C
86751857 GTCGATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.27, G:0.10, T:0.20
Consensus pattern (20 bp):
CCGAAAATCCTTTGACAAAA
Found at i:86756211 original size:29 final size:29
Alignment explanation
Indices: 86756169--86756285 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 29
86756159 GAAAGCATGT
*
86756169 ATATGAATGTGATTTGCACCTAATGGGCC
1 ATATGAATGTGATTTGGACCTAATGGGCC
*
86756198 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGACCTAATGGGCC
*
86756227 ATACGAATGTGATTTGGACCTAATGGGCC
1 ATATGAATGTGATTTGGACCTAATGGGCC
* * *
86756256 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGACCTAATGGGCC
86756284 AT
1 AT
86756286 TTGCATGTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 16 0.20
29 64 0.80
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGACCTAATGGGCC
Found at i:86764805 original size:40 final size:40
Alignment explanation
Indices: 86764750--86764901 Score: 236
Period size: 40 Copynumber: 3.8 Consensus size: 40
86764740 GGATATAGCT
* * *
86764750 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
86764790 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
86764830 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
86764870 GCTCGCACAAATGCCTTCGGGACTT-GCCCGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
86764902 ACGAGTCACT
Statistics
Matches: 105, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 7 0.07
40 96 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:86768115 original size:40 final size:40
Alignment explanation
Indices: 86768079--86768268 Score: 310
Period size: 40 Copynumber: 4.8 Consensus size: 40
86768069 GGATATAGCT
*
86768079 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
86768119 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
86768159 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
86768199 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
86768239 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
86768269 TTTATCATCC
Statistics
Matches: 141, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 139 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:86780009 original size:42 final size:41
Alignment explanation
Indices: 86779890--86780009 Score: 141
Period size: 42 Copynumber: 2.9 Consensus size: 41
86779880 CACACAGTAC
* * * *
86779890 CATACCAATGCCATATCCCAGATATTGTCTTACATGAAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACA-CAAATCT
* * *
86779932 CGTATCAATGCCAATATTCCAACTATGGTCTTACACAAAGTCT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACACAAA-TCT
*
86779975 CATATCAATTCCATATCCCAAATATGGTCTTACAC
1 CATATCAATGCCATATCCCAAATATGGTCTTACAC
86780010 GTTATCTTAG
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 34 0.52
43 31 0.48
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (41 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACACAAATCT
Found at i:86787625 original size:16 final size:16
Alignment explanation
Indices: 86787583--86787625 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
86787573 GTATATCGGC
*
86787583 AAAAGCCAAAATGCCA
1 AAAAGCCGAAATGCCA
*
86787599 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCA
*
86787615 AAAAGCTGAAA
1 AAAAGCCGAAA
86787626 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.21, G:0.19, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:86787878 original size:29 final size:29
Alignment explanation
Indices: 86787836--86787952 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 29
86787826 GAAAGCATGT
*
86787836 ATATGAATGTGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
86787865 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
86787894 GTACGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
86787923 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
86787951 AT
1 AT
86787953 TTGCATGTAT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 16 0.20
29 63 0.80
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:86789875 original size:29 final size:29
Alignment explanation
Indices: 86789843--86789974 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
86789833 ATAGTGAATC
86789843 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
86789872 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
86789902 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
86789931 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
86789960 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86789975 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:86789984 original size:59 final size:59
Alignment explanation
Indices: 86789843--86789974 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
86789833 ATAGTGAATC
86789843 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
86789902 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
86789960 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86789975 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:86790001 original size:59 final size:59
Alignment explanation
Indices: 86789843--86790003 Score: 200
Period size: 59 Copynumber: 2.7 Consensus size: 59
86789833 ATAGTGAATC
* * * *
86789843 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAATTTTCAGCT
* * * * *
86789902 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAATTTTCAGCT
*
86789960 CGCACACTTAGTGCTGTACAATTTTTAAACCCGCACA-TTAGTGC
1 CGCACACTTAGTGCTATA-AA-TTTTAAACCCGCACACTTAGTGC
86790004 CAATCTTGTC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
58 26 0.28
59 56 0.60
60 12 0.13
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (59 bp):
CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:86790001 original size:88 final size:88
Alignment explanation
Indices: 86789843--86790003 Score: 252
Period size: 88 Copynumber: 1.8 Consensus size: 88
86789833 ATAGTGAATC
* * * *
86789843 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCACA
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTAAACCCGCACA
86789908 CTTAGTGCTATATATTTTCAGCT
66 CTTAGTGCTATATATTTTCAGCT
* *
86789931 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAACCCGCAC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAA-TTTTAAACCCGCAC
86789996 A-TTAGTGC
65 ACTTAGTGC
86790004 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
88 54 0.82
89 12 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (88 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTAAACCCGCACA
CTTAGTGCTATATATTTTCAGCT
Found at i:86794158 original size:93 final size:93
Alignment explanation
Indices: 86794048--86794219 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86794038 GCCTATAAGT
*
86794048 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86794113 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
86794141 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86794206 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
86794220 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86794215 original size:46 final size:46
Alignment explanation
Indices: 86794042--86794215 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
86794032 TAACCCGCCT
*
86794042 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
86794088 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCC
*** *
86794134 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
86794181 ATAAGTGAACTCGGACTCAACTCAGCGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
86794216 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 67 0.61
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:86798049 original size:42 final size:43
Alignment explanation
Indices: 86797972--86798111 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 43
86797962 TCCCGGACGT
* *
86797972 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAG
*
86798015 GGTCTTACACG-AATTCAGATA-CGATG-CTGATGTCCCAGACAT
1 GGTCTTACACGTAATTCA-ATATCGATGCCT-ATGTCCCAGACAG
* * * * *
86798057 GGTCTTACACATAAATCTCAA-ATCGAGGCCTGTGTCCCAGGCAC
1 GGTCTTACACGT-AAT-TCAATATCGATGCCTATGTCCCAGACAG
*
86798101 AGTCTTACACG
1 GGTCTTACACG
86798112 ATATCTTAGA
Statistics
Matches: 80, Mismatches: 10, Indels: 13
0.78 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 32 0.40
43 14 0.17
44 27 0.34
45 5 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAG
Found at i:86803702 original size:17 final size:16
Alignment explanation
Indices: 86803676--86803710 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
86803666 TTCATAGTTT
*
86803676 GCAAGTTCCTTATTGTG
1 GCAAGATCCTTATT-TG
86803693 GCAAGATCCTTATTTG
1 GCAAGATCCTTATTTG
86803709 GC
1 GC
86803711 TGACTCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (16 bp):
GCAAGATCCTTATTTG
Found at i:86805571 original size:39 final size:39
Alignment explanation
Indices: 86805479--86805593 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 39
86805469 CACTAGACAG
* * * *
86805479 AAGCTCATAAGAGCTGATCCAACCAAAATACGCCAAAGAA
1 AAGCTCATAAGAGCTGATCCACCCGAAACACGCC-AACAA
*
86805519 AAGCTCATAAGAGCTGGTCCACCCGAAACACGCCAACAA
1 AAGCTCATAAGAGCTGATCCACCCGAAACACGCCAACAA
*
86805558 AAGCTCATAAGAGCTGATCCACCCGAATCACGCCAA
1 AAGCTCATAAGAGCTGATCCACCCGAAACACGCCAA
86805594 ACAGAAAGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 38 0.56
40 30 0.44
ACGTcount: A:0.41, C:0.30, G:0.17, T:0.12
Consensus pattern (39 bp):
AAGCTCATAAGAGCTGATCCACCCGAAACACGCCAACAA
Found at i:86814593 original size:40 final size:40
Alignment explanation
Indices: 86814490--86814610 Score: 156
Period size: 39 Copynumber: 3.0 Consensus size: 40
86814480 ATATCCGGAC
* **
86814490 TAAGATCC-GAAGGCATTCGTGCGAGTTAATAAATTCGGGT
1 TAAG-TCCTGAAGGCATTCGTGCGAGTTACTAAACCCGGGT
* *
86814530 TAAGCCCT-AAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCTGAAGGCATTCGTGCGAGTTACTAAACCCGGGT
*
86814569 TAAGTCCTGAAGGCATTCGTGCGAGTTACTATAACCGGGGT
1 TAAGTCCTGAAGGCATTCGTGCGAGTTACTA-AACCCGGGT
86814610 T
1 T
86814611 TGTCCCGAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.51
40 25 0.36
41 9 0.13
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCTGAAGGCATTCGTGCGAGTTACTAAACCCGGGT
Found at i:86814621 original size:40 final size:39
Alignment explanation
Indices: 86814496--86814622 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
86814486 GGACTAAGAT
* *
86814496 CCGAAGGCATTCGTGCGAGTTAATAAATTCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
86814535 CCTAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
86814575 CTGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACC-GGGTTAAGTC
86814615 CCGAAGGC
1 CCGAAGGC
86814623 CTTTGAGTGA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.44
40 35 0.47
41 7 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:86817020 original size:43 final size:42
Alignment explanation
Indices: 86816970--86817119 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 42
86816960 AATGCCGACA
* *
86816970 TCCCAGACATGGTCTTACATGTAATCAAATATCAATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCAAATA-CAATGCCAATG
* *
86817013 TCCCAGACAGGGTCTTACACG-AGATCAAATACAATGTCAATG
1 TCCCAGACATGGTCTTACACGTA-ATCAAATACAATGCCAATG
* * * **
86817055 TTCCAAACATGGTCTTACACGTAAATCATAAGT-CAATGGCAACA
1 TCCCAGACATGGTCTTACACGT-AATCA-AA-TACAATGCCAATG
* *
86817099 TCCCAAACGTGGTCTTACACG
1 TCCCAGACATGGTCTTACACG
86817120 AAAACACATA
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 28 0.31
43 31 0.34
44 30 0.33
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATCAAATACAATGCCAATG
Found at i:86823550 original size:40 final size:40
Alignment explanation
Indices: 86823495--86823635 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
86823485 TGAATGATAC
* * *
86823495 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
**
86823535 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * * *** *
86823575 CCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
86823615 CCGAGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
86823636 ATTGTGCTTG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:86831441 original size:40 final size:40
Alignment explanation
Indices: 86831386--86831547 Score: 173
Period size: 40 Copynumber: 4.0 Consensus size: 40
86831376 TGAATGATAC
* * * *
86831386 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
86831426 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
86831466 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * ** *
86831506 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
86831546 CC
1 CC
86831548 TGTTAAATTC
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:86831543 original size:80 final size:80
Alignment explanation
Indices: 86831386--86831547 Score: 200
Period size: 80 Copynumber: 2.0 Consensus size: 80
86831376 TGAATGATAC
* * ****
86831386 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTGTATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
86831451 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
86831466 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
86831530 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
86831546 CC
1 CC
86831548 TGTTAAATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
80 66 0.96
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:86846621 original size:40 final size:40
Alignment explanation
Indices: 86846567--86846776 Score: 282
Period size: 40 Copynumber: 5.2 Consensus size: 40
86846557 CACAAGGCCG
* * *
86846567 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
86846607 TCGGGACTTAGCCCGG-ATATAGTAACTCA-CACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACT-AGCACAAATGCCT
* *
86846647 TCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
*
86846687 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
* * * *
86846727 TCGAGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
86846767 TCGGGACTTA
1 TCGGGACTTA
86846777 ACCCCGTTAG
Statistics
Matches: 155, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
40 152 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
Found at i:86846661 original size:80 final size:80
Alignment explanation
Indices: 86846527--86846776 Score: 319
Period size: 80 Copynumber: 3.1 Consensus size: 80
86846517 ACCCAATTAT
* *** * * * *
86846527 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
86846589 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
* *
86846605 CTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTTGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
86846670 AACTCGCACAAATGC
66 CACTAGCACAAATGC
* *
86846685 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
86846749 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
86846765 CTTCGGGACTTA
1 CTTCGGGACTTA
86846777 ACCCCGTTAG
Statistics
Matches: 150, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
78 12 0.08
79 17 0.11
80 119 0.79
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:86852123 original size:46 final size:46
Alignment explanation
Indices: 86852070--86852245 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86852060 TATTTGGGCA
86852070 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
86852116 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
86852163 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
86852209 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86852246 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:86852225 original size:93 final size:93
Alignment explanation
Indices: 86852066--86852237 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86852056 GGGATATTTG
* *
86852066 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86852131 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86852159 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86852224 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86852238 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86856711 original size:39 final size:40
Alignment explanation
Indices: 86856639--86856892 Score: 284
Period size: 40 Copynumber: 6.4 Consensus size: 40
86856629 ACCCAATTAT
* *** *
86856639 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * *
86856677 CATCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
86856717 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
86856757 CTACGGGACTTAGCCCGGA-ATTGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
86856796 CTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
* * * * *
86856836 CTTCGAGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
86856876 CTTCGGGACTTAACCCG
1 CTTCGGGACTTAGCCCG
86856893 TTAGCATCCG
Statistics
Matches: 188, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
38 10 0.05
39 54 0.29
40 124 0.66
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:86856790 original size:79 final size:79
Alignment explanation
Indices: 86856639--86856892 Score: 309
Period size: 79 Copynumber: 3.2 Consensus size: 79
86856629 ACCCAATTAT
* *** * * *
86856639 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCC-ATCGGGTCTTAGCCCGGATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTA-CGGGACTTAGCCCGGA-ATTG
86856701 TCACTAGCACAAATGC
64 TCACTAGCACAAATGC
*
86856717 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTACGGGACTTAGCCCGGAATTGTA
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTACGGGACTTAGCCCGGAATTGTC
*
86856782 ACTCGCACAAATGC
66 ACTAGCACAAATGC
* * * *
86856796 CTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTACGGGACTTAGCCCGGAATT-G
*
86856860 TCACTAGCACAAATGT
64 TCACTAGCACAAATGC
*
86856876 CTTCGGGACTTAACCCG
1 CTTCGGGACTTAGCCCG
86856893 TTAGCATCCG
Statistics
Matches: 154, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
78 13 0.08
79 91 0.59
80 49 0.32
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTACGGGACTTAGCCCGGAATTGTC
ACTAGCACAAATGC
Found at i:86856852 original size:119 final size:118
Alignment explanation
Indices: 86856664--86856892 Score: 300
Period size: 119 Copynumber: 1.9 Consensus size: 118
86856654 GGATATAACC
* * * *
86856664 ACTCGCACAAGGCCATCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAGGCCATCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGAGACTTA
* * *
86856729 GCCCGG-ATATAGTAACTCGCACAAATGCCTACGGGACTTAGCCCGGAATTGTA
66 GCCCGGAAT-TAATAACTAGCACAAATGCCTACGGGACTTAACCCGGAATTGTA
* * *
86856782 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTCGAGACT
1 ACTCGCAC-AAGGCCATCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGAGACT
* * *
86856846 TAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGACTTAACCCG
64 TAGCCCGGAATTAATAACTAGCACAAATGCCTACGGGACTTAACCCG
86856893 TTAGCATCCG
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
118 9 0.09
119 84 0.88
120 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (118 bp):
ACTCGCACAAGGCCATCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGAGACTTA
GCCCGGAATTAATAACTAGCACAAATGCCTACGGGACTTAACCCGGAATTGTA
Found at i:86863475 original size:24 final size:24
Alignment explanation
Indices: 86863448--86863586 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
86863438 CTTATTATGT
**
86863448 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
86863472 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86863496 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86863520 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86863544 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
86863568 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
86863587 TATTTCCAGC
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:86863611 original size:29 final size:29
Alignment explanation
Indices: 86863569--86863642 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
86863559 CATAGTAAAT
*
86863569 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86863598 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86863627 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86863643 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86869176 original size:47 final size:46
Alignment explanation
Indices: 86869073--86869336 Score: 202
Period size: 47 Copynumber: 5.6 Consensus size: 46
86869063 GTAAGGTGCA
* *
86869073 GATGCCATGTCCCAGACATAGTCTTACACTGGCTCAT-ATCTCAA-GTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-ATCATCTCAAGGTC
* * * *
86869120 GATACCATGTCCTAAACATGGTCTTACACT-GACTATCATCTCGTA-GTC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTC-AAGGTC
* * *
86869168 GATGCATGTCCCAGACATATCTTACACTAGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCAAGGTC
* * *
86869214 GATGCATGTACCAGACATGTCTTACACTAGCTCTCATCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGGTC
* * * *
86869260 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCA--T-AATGTGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATCTCAA-G-GTC
*
86869307 TGATGCATGTCCCAGACATGACTTACACTA
1 -GATGCATGTCCCAGACATGTCTTACACTA
86869337 TATCACAAAC
Statistics
Matches: 179, Mismatches: 25, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.02
46 74 0.41
47 75 0.42
48 26 0.15
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGGTC
Found at i:86869206 original size:46 final size:46
Alignment explanation
Indices: 86869073--86869287 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
86869063 GTAAGGTGCA
* * * *
86869073 GATGCCATGTCCCAGACATAGTCTTACACTGGCTCATATCTCAA-GTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCAAGGTC
* * * *
86869120 GATACCATGTCCTAAACATGGTCTTACACT-GAC-TATCATCTCGTA-GTC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTC-AAGGTC
* * *
86869168 GATGCATGTCCCAGACATATCTTACACTAGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGTC
* *
86869214 GATGCATGTACCAGACATGTCTTACACTAGCTCT-CATCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGGTC
86869260 GATGCCATGTCCCAGACATGGTCTTACA
1 GATG-CATGTCCCAGACAT-GTCTTACA
86869288 TTGGCTCTCA
Statistics
Matches: 138, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 63 0.46
47 60 0.43
48 14 0.10
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGTC
Done.