Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 288 of 378
Found at i:86869332 original size:140 final size:141
Alignment explanation
Indices: 86869073--86869336 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 141
86869063 GTAAGGTGCA
* * * *
86869073 GATGCCATGTCCCAGACATAGTCTTACACTGGCTCATATCTCAAGTTGATACCATGTCCTAAACA
1 GATGCCATGTACCAGACATAGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAAACA
*
86869138 TGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTCCCAGACATATCTTACACTAGCTTAC
66 TGGTCTTACACTGACTATCATATCGTAGTCGATGCATGTCCCAGACATATCTTACACTAGCTTAC
86869203 ATCTCGAGGCC
131 ATCTCGAGGCC
* *
86869214 GATG-CATGTACCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGTCGATGCCATGTCCCAGA
1 GATGCCATGTACCAGACATAGTCTTACACTAGCTCAT-ATCTCAA-GTCGATACCATGTCCCAAA
* * * *
86869276 CATGGTCTTACATTGGCTCTCATAAT-GT-GGCTGATGCATGTCCCAGACATGA-CTTACACTA
64 CATGGTCTTACACTGACTATCAT-ATCGTAGTC-GATGCATGTCCCAGACAT-ATCTTACACTA
86869337 TATCACAAAC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
138 1 0.01
139 23 0.21
140 77 0.72
141 6 0.06
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (141 bp):
GATGCCATGTACCAGACATAGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAAACA
TGGTCTTACACTGACTATCATATCGTAGTCGATGCATGTCCCAGACATATCTTACACTAGCTTAC
ATCTCGAGGCC
Found at i:86875091 original size:22 final size:23
Alignment explanation
Indices: 86875052--86875094 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
86875042 AAAATCCTAC
*
86875052 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
86875075 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
86875095 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:86886481 original size:30 final size:30
Alignment explanation
Indices: 86886426--86886482 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86886416 CTTTTGAAAA
**
86886426 TATTTACAAAAAGAGGCACTTAATTTTTAT
1 TATTTACAAAAAGAGGCACCAAATTTTTAT
86886456 TATTTACAAAAAGA-GCAACCAAATTTT
1 TATTTACAAAAAGAGGC-ACCAAATTTT
86886483 AAAATAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCACCAAATTTTTAT
Found at i:86892892 original size:41 final size:42
Alignment explanation
Indices: 86892803--86892937 Score: 123
Period size: 43 Copynumber: 3.2 Consensus size: 42
86892793 TTTGGGATGT
* * *
86892803 TGGCATTGATATGTGATTACGTATAAGACCATGTCTGGGA-AA
1 TGGCATTGATATGTGATT-CGTGTAAGACCCTGTCTAGGACAA
* *
86892845 TCGGCATTG-TATTTGATTCGTGTAAGACCCTGTCTAGGACAG
1 T-GGCATTGATATGTGATTCGTGTAAGACCCTGTCTAGGACAA
* * * *
86892887 TGGCATCGATATGTGATAGCATGTAAGACCAC-GTCTAGGACAT
1 TGGCATTGATATGTGAT-TCGTGTAAGACC-CTGTCTAGGACAA
*
86892930 TGACATTG
1 TGGCATTG
86892938 TACGATATAT
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
41 24 0.32
42 18 0.24
43 33 0.43
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGGCATTGATATGTGATTCGTGTAAGACCCTGTCTAGGACAA
Found at i:86899238 original size:15 final size:15
Alignment explanation
Indices: 86899218--86899248 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
86899208 AAATATGAAA
86899218 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
86899233 GATATGTTTTGTATT
1 GATATGTTTTGGATT
86899248 G
1 G
86899249 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:86903069 original size:29 final size:30
Alignment explanation
Indices: 86903006--86903121 Score: 136
Period size: 29 Copynumber: 4.1 Consensus size: 30
86902996 ATACATGCAC
* *
86903006 ATGGCCCAT-TAGGCCCAA-TCTTATTCAA
1 ATGGCCCATCTAGGCCCAATTCATATTCAT
* *
86903034 ATGGCCCATCTA-GCCCAGTTCATATTCTT
1 ATGGCCCATCTAGGCCCAATTCATATTCAT
*
86903063 ATGGCCCA-CTAGGCCCAATTCACATTCAT
1 ATGGCCCATCTAGGCCCAATTCATATTCAT
*
86903092 ATGGCCCAT-TAGGCCCAAATCATATT-AT
1 ATGGCCCATCTAGGCCCAATTCATATTCAT
86903120 AT
1 AT
86903122 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
28 21 0.28
29 54 0.72
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (30 bp):
ATGGCCCATCTAGGCCCAATTCATATTCAT
Found at i:86904604 original size:16 final size:16
Alignment explanation
Indices: 86904585--86904617 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
86904575 AAAATTTCAA
*
86904585 GATTTTGAGATTTTTG
1 GATTTCGAGATTTTTG
86904601 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
86904617 G
1 G
86904618 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:86907025 original size:41 final size:42
Alignment explanation
Indices: 86906912--86907079 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 42
86906902 GGATTTTTTT
* * *
86906912 ATATGTGTTCTCGTGTAAGACCATGTCTGGGACGTTCGCATCG
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATTGGCATCG
*
86906955 ATATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATC-
1 ATATGTGATT-CGTGTAAGACCATGTCTGGGACATTGGCATCG
* * * * *
86906997 ATATTTGATTCGTGTAAGACCCTATCTGGGATAGTGGCATCG
1 ATATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCG
* * * * * *
86907039 ATATGTGATAACATGTAAGACCACGTTTAGCACATTGGCAT
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATTGGCAT
86907080 TGTACAATAT
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 26 0.26
42 18 0.18
43 57 0.56
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:86907025 original size:84 final size:84
Alignment explanation
Indices: 86906922--86907079 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
86906912 ATATGTGTTC
* * * ** * * *
86906922 TCGTGTAAGACCATGTCTGGGA-CGTTCGCATCGATATGTGATTATGTGTAAGACCATGTCTGGG
1 TCGTGTAAGACCATATCTGGGATAG-TCGCATCGATATGTGATAACATGTAAGACCACGTCTAGC
86906986 ACATTGGCATCATATTTGAT
65 ACATTGGCATCATATTTGAT
* * *
86907006 TCGTGTAAGACCCTATCTGGGATAGTGGCATCGATATGTGATAACATGTAAGACCACGTTTAGCA
1 TCGTGTAAGACCATATCTGGGATAGTCGCATCGATATGTGATAACATGTAAGACCACGTCTAGCA
86907071 CATTGGCAT
66 CATTGGCAT
86907080 TGTACAATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
84 61 0.98
85 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (84 bp):
TCGTGTAAGACCATATCTGGGATAGTCGCATCGATATGTGATAACATGTAAGACCACGTCTAGCA
CATTGGCATCATATTTGAT
Found at i:86910658 original size:43 final size:43
Alignment explanation
Indices: 86910588--86910849 Score: 341
Period size: 43 Copynumber: 6.1 Consensus size: 43
86910578 TTATATAGAA
*
86910588 AAACGCAGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* ** *
86910631 AAATGCCAATATAGAACAT-ACCCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGAACATGA-CCTTTAGCGGCGCTTTTCCCAC
* *
86910674 AAACGCCCCTATAGAACATGACCTTTAGAGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* *
86910717 AAACGCCGCTATAGAACATGACCTTTAGTGGTGCTTTT-CCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
86910759 AAACGCCGCCATAGAATAAGACCTTTAGTGGCGCTTTTACCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * *
86910802 AAACGCCGCTATAGAACATGACCTTCAACGGCGC-TCTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
86910844 AAACGC
1 AAACGC
86910850 TGTAACACCC
Statistics
Matches: 191, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
42 51 0.27
43 139 0.73
44 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:86910803 original size:85 final size:86
Alignment explanation
Indices: 86910588--86910849 Score: 325
Period size: 85 Copynumber: 3.1 Consensus size: 86
86910578 TTATATAGAA
* * * * **
86910588 AAACGCAGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCCAATATAGAACAT-AC
1 AAACGCCGCCATAGAACATGACCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGA-
86910652 CCTTTAGCGGCACTTTTCCCAC
65 CCTTTAGCGGCACTTTTCCCAC
86910674 AAACGCC-CCTATAGAACATGACCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGA
1 AAACGCCGCC-ATAGAACATGACCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGA
* **
86910738 CCTTTAGTGGTGCTTTT-CCAC
65 CCTTTAGCGGCACTTTTCCCAC
* * * *
86910759 AAACGCCGCCATAGAATAAGACCTTTAGTGGCGCTTTTACCACAAACGCCGCTATAGAACATGAC
1 AAACGCCGCCATAGAACATGACCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGAC
* * * *
86910824 CTTCAACGGCGC-TCTCCCAC
66 CTTTAGCGGCACTTTTCCCAC
86910844 AAACGC
1 AAACGC
86910850 TGTAACACCC
Statistics
Matches: 154, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
84 2 0.01
85 81 0.53
86 70 0.45
87 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (86 bp):
AAACGCCGCCATAGAACATGACCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGAC
CTTTAGCGGCACTTTTCCCAC
Found at i:86912310 original size:68 final size:70
Alignment explanation
Indices: 86912160--86912317 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 70
86912150 CTAGCCGATT
* * *
86912160 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
86912225 TTTATC
65 TACATC
* * * *
86912231 TTTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC-
1 TGTCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTACA
*
86912292 TACATGG
65 TACAT-C
*
86912299 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
86912318 ACACATGATG
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
67 3 0.04
68 38 0.53
70 2 0.03
71 29 0.40
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (70 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ACATC
Found at i:86912658 original size:18 final size:18
Alignment explanation
Indices: 86912635--86912672 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
86912625 ATAACACATT
86912635 TAGCTCATTTAATACTCA
1 TAGCTCATTTAATACTCA
86912653 TAGCTCATTTAATACTCA
1 TAGCTCATTTAATACTCA
86912671 TA
1 TA
86912673 CTATTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (18 bp):
TAGCTCATTTAATACTCA
Found at i:86921084 original size:42 final size:43
Alignment explanation
Indices: 86921003--86921087 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
86920993 TTCGGGTTGT
86921003 CACAAACGCCACTATAGAACATGACCTTTAGCAGCGCTTTTCC
1 CACAAACGCCACTATAGAACATGACCTTTAGCAGCGCTTTTCC
*
86921046 CACAAACGCCACTATAGAACA-GACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCACTATAGAACATGACCTTTAGCAGCGCTTTTCC
86921088 TAAAAATGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 20 0.49
43 21 0.51
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.22
Consensus pattern (43 bp):
CACAAACGCCACTATAGAACATGACCTTTAGCAGCGCTTTTCC
Found at i:86921113 original size:42 final size:43
Alignment explanation
Indices: 86921006--86921116 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
86920996 GGGTTGTCAC
* * *
86921006 AAACGCCACTATAGAACATGACCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCACTATAAAAAATGACCTTTAGCAGCGCTTTTCCCAA
* * * *
86921049 AAACGCCACTATAGAACA-GACCTTTAGCGGCGCTTTTCCTAA
1 AAACGCCACTATAAAAAATGACCTTTAGCAGCGCTTTTCCCAA
* **
86921091 AAATGCTGCTA-AAAAAATGACCTTTA
1 AAACGCCACTATAAAAAATGACCTTTA
86921117 AAAAATATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
41 4 0.07
42 37 0.63
43 18 0.31
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.24
Consensus pattern (43 bp):
AAACGCCACTATAAAAAATGACCTTTAGCAGCGCTTTTCCCAA
Found at i:86925364 original size:7 final size:7
Alignment explanation
Indices: 86925352--86925386 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
86925342 ACTAATTAAT
86925352 CTAAACC
1 CTAAACC
86925359 CTAAACCC
1 CTAAA-CC
*
86925367 CTAACCC
1 CTAAACC
86925374 CTAAACC
1 CTAAACC
86925381 CTAAAC
1 CTAAAC
86925387 ATAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (7 bp):
CTAAACC
Found at i:86925375 original size:15 final size:15
Alignment explanation
Indices: 86925352--86925386 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
86925342 ACTAATTAAT
86925352 CTAAACCCTAAACCC
1 CTAAACCCTAAACCC
*
86925367 CTAACCCCTAAA-CC
1 CTAAACCCTAAACCC
86925381 CTAAAC
1 CTAAAC
86925387 ATAAAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (15 bp):
CTAAACCCTAAACCC
Found at i:86927212 original size:46 final size:46
Alignment explanation
Indices: 86927159--86927334 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
86927149 TATTTGGGCA
86927159 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86927205 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
86927250 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86927298 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86927335 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86927314 original size:93 final size:93
Alignment explanation
Indices: 86927155--86927326 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86927145 AGGATATTTG
* *
86927155 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86927220 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86927248 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86927313 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86927327 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86930263 original size:15 final size:15
Alignment explanation
Indices: 86930243--86930311 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
86930233 GTATCTTGGG
86930243 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
86930258 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
86930273 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
86930288 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
86930303 TTTCTTTAT
1 TTTCTTTAT
86930312 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:86930312 original size:30 final size:30
Alignment explanation
Indices: 86930234--86930321 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
86930224 CATAGTATCG
* * * *
86930234 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
86930264 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
86930294 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
86930322 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:86932865 original size:46 final size:45
Alignment explanation
Indices: 86932702--86932874 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
86932692 ATTTGGGCAT
* *
86932702 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
* * *
86932746 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---GC
86932791 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGC
*
86932839 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86932875 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
Found at i:86938208 original size:53 final size:54
Alignment explanation
Indices: 86938025--86938240 Score: 267
Period size: 55 Copynumber: 4.0 Consensus size: 54
86938015 ATTAGGATTT
* *
86938025 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCATAAGGC
* * *
86938080 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * *
86938135 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * *
86938188 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGG
86938241 ATACCACGTA
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 44 0.32
54 18 0.13
55 68 0.49
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:86938231 original size:108 final size:110
Alignment explanation
Indices: 86938032--86938234 Score: 322
Period size: 108 Copynumber: 1.9 Consensus size: 110
86938022 TTTAAGGATA
*
86938032 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
86938097 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
* *
86938142 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
86938204 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGGCAATGATAAGTTTC
86938235 AAAAGGATAC
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
107 3 0.03
108 50 0.58
109 7 0.08
110 26 0.30
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:86938492 original size:16 final size:16
Alignment explanation
Indices: 86938471--86938501 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86938461 ATAAATTTGA
86938471 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86938487 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86938502 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86945133 original size:19 final size:19
Alignment explanation
Indices: 86945109--86945145 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
86945099 AGGCCTCTCT
86945109 GGATTT-TATTTTAATTTGG
1 GGATTTATATTTT-ATTTGG
86945128 GGATTTATATTTTATTTG
1 GGATTTATATTTTATTTG
86945146 CTTTAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (19 bp):
GGATTTATATTTTATTTGG
Found at i:86953411 original size:2 final size:2
Alignment explanation
Indices: 86953404--86953436 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86953394 TCTTTTCTTT
86953404 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86953437 GTATGTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86960292 original size:17 final size:17
Alignment explanation
Indices: 86960270--86960303 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86960260 CACTAACATG
* *
86960270 AAAATGTAATGACAATA
1 AAAATGCAATCACAATA
86960287 AAAATGCAATCACAATA
1 AAAATGCAATCACAATA
86960304 TATATTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.12, G:0.09, T:0.21
Consensus pattern (17 bp):
AAAATGCAATCACAATA
Found at i:86960757 original size:21 final size:21
Alignment explanation
Indices: 86960731--86960784 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
86960721 TTCTCATTTT
*
86960731 CAACAACTTCTTCTTCTT-CAG
1 CAACAACTTCCTCTT-TTGCAG
*
86960752 CAACAA-TATCCTCTTTTGTAG
1 CAACAACT-TCCTCTTTTGCAG
86960773 CAACAACTTCCT
1 CAACAACTTCCT
86960785 TTTCAACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 24 0.86
22 1 0.04
ACGTcount: A:0.28, C:0.31, G:0.06, T:0.35
Consensus pattern (21 bp):
CAACAACTTCCTCTTTTGCAG
Found at i:86964266 original size:29 final size:28
Alignment explanation
Indices: 86964234--86964305 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
86964224 TTCAAGCCCA
* *
86964234 CACACATAGTGCCATATAGTCCAAACTCG
1 CACAC-TAGTGCCATACAGTACAAACTCG
* *
86964263 CACACTTAGTGCCATACATTACAAGCTCG
1 CACAC-TAGTGCCATACAGTACAAACTCG
86964292 CACACTCAGTGCCA
1 CACACT-AGTGCCA
86964306 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.21
Consensus pattern (28 bp):
CACACTAGTGCCATACAGTACAAACTCG
Found at i:86972268 original size:29 final size:28
Alignment explanation
Indices: 86972236--86972307 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
86972226 TTCAAGCCCA
* *
86972236 CACACATAGTGCCATATAGTCCAAACTCG
1 CACAC-TAGTGCCATACAGTACAAACTCG
* *
86972265 CACACTTAGTGCCATACATTACAAGCTCG
1 CACAC-TAGTGCCATACAGTACAAACTCG
86972294 CACACTCAGTGCCA
1 CACACT-AGTGCCA
86972308 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.21
Consensus pattern (28 bp):
CACACTAGTGCCATACAGTACAAACTCG
Found at i:86979455 original size:13 final size:13
Alignment explanation
Indices: 86979437--86979467 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
86979427 ACACACGGGT
86979437 GTGTGTCTAGGCC
1 GTGTGTCTAGGCC
86979450 GTGTGTCTAGGCC
1 GTGTGTCTAGGCC
86979463 GTGTG
1 GTGTG
86979468 CGACACACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.32
Consensus pattern (13 bp):
GTGTGTCTAGGCC
Found at i:86980907 original size:25 final size:25
Alignment explanation
Indices: 86980858--86980907 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
86980848 GTGTCTAAGC
*
86980858 TCTGGGATTGTATAAAAGGTAGTAA
1 TCTGGGATTGTATAAAAGGGAGTAA
*
86980883 TCTGGGATTGTATAAAAGGGGGTAA
1 TCTGGGATTGTATAAAAGGGAGTAA
86980908 AATTTTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.32, T:0.30
Consensus pattern (25 bp):
TCTGGGATTGTATAAAAGGGAGTAA
Found at i:86981018 original size:21 final size:19
Alignment explanation
Indices: 86980992--86981055 Score: 51
Period size: 21 Copynumber: 3.3 Consensus size: 19
86980982 ATTAATTTAA
86980992 ATTTAAATTTATTTTAAAT
1 ATTTAAATTTATTTTAAAT
* *
86981011 ACTATT-AATTACATATTAAAT
1 A-T-TTAAATT-TATTTTAAAT
* *
86981032 ATTTAAAATTATTTTGAA-
1 ATTTAAATTTATTTTAAAT
86981050 ATTTAA
1 ATTTAA
86981056 TCATATAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
18 6 0.17
19 9 0.26
20 9 0.26
21 11 0.31
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTTAAATTTATTTTAAAT
Found at i:86997699 original size:216 final size:216
Alignment explanation
Indices: 86997291--86997707 Score: 531
Period size: 216 Copynumber: 1.9 Consensus size: 216
86997281 ATACACGTAT
*
86997291 ATATTAGAACCCGATATCTTATATATTTGTGTTGTATTCATATATTTTATGTTATTACCGTATTT
1 ATATTAGAACCCGATATCTTATATATTTGTGTTGTATTCATATATTTTATGTTATTACCATATTT
* * * * * ** *
86997356 AGGATATTTTAAATTCATTTAAAACTTTATTTGTAATTGTTCTGTATGTACATATGTATGTATGA
66 AAGATATTTTAAATTCATATAAAACCTTATATGCAATTGTTCTGTATGTACATATGTATAAAAGA
* * *
86997421 AAGAAAAATAGGAGAAAATCGGGTGCTAGAGAAGAAGGCCATGATGGTAGTGAGTCGGTGATAGT
131 AAGAAAAATAGGAGAAAACCGGGTGCTAGAGAAGAACGCCAAGATGGTAGTGAGTCGGTGATAGT
86997486 AGAAAATATATACATACTTAC
196 AGAAAATATATACATACTTAC
* * *
86997507 ATATTAGAACTCGATAAT-TTGTATATTTGTGTTAGTATTCATATACTTTTTATGTTATTATCAT
1 ATATTAGAACCCGAT-ATCTTATATATTTGTGTT-GTATTCATATA--TTTTATGTTATTACCAT
* **
86997571 GTTTAAGATATTTTAAATTCATATAAAACCTTATATGCAATTGTTCTGTATGTATGTATG-A-AA
62 ATTTAAGATATTTTAAATTCATATAAAACCTTATATGCAATTGTTCTGTATGTACATATGTATAA
* * * * *
86997634 AAGAAA-AAAACAGT-GGAG-AAACCGGGTGCTAGAGATGAACTCCAAGGTGGTGGTGAGTTGGT
127 AAGAAAGAAAA-A-TAGGAGAAAACCGGGTGCTAGAGAAGAACGCCAAGATGGTAGTGAGTCGGT
86997696 GATAGTAGAAAA
190 GATAGTAGAAAA
86997708 ATAACAAGTA
Statistics
Matches: 172, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
216 80 0.47
217 23 0.13
218 2 0.01
219 67 0.39
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (216 bp):
ATATTAGAACCCGATATCTTATATATTTGTGTTGTATTCATATATTTTATGTTATTACCATATTT
AAGATATTTTAAATTCATATAAAACCTTATATGCAATTGTTCTGTATGTACATATGTATAAAAGA
AAGAAAAATAGGAGAAAACCGGGTGCTAGAGAAGAACGCCAAGATGGTAGTGAGTCGGTGATAGT
AGAAAATATATACATACTTAC
Found at i:86999631 original size:27 final size:25
Alignment explanation
Indices: 86999570--86999638 Score: 111
Period size: 25 Copynumber: 2.7 Consensus size: 25
86999560 ATAACACTTT
86999570 AAAATCAAAATATTTTCTTGTATAA
1 AAAATCAAAATATTTTCTTGTATAA
*
86999595 AAAATAAAAATATTTTCTTGTATAAAA
1 AAAATCAAAATATTTTCTTGTAT--AA
86999622 AAAATCAAAATATTTTC
1 AAAATCAAAATATTTTC
86999639 CAAAATGGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 22 0.55
27 18 0.45
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (25 bp):
AAAATCAAAATATTTTCTTGTATAA
Found at i:87000741 original size:28 final size:27
Alignment explanation
Indices: 87000681--87000780 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 27
87000671 GTGTATGCCG
* *
87000681 CAAAGGCT-TTCCTTTTTATGATCTGCCA
1 CAAAGGCTATT-CTTTTTACGATC-ACCA
* *
87000709 TAAAGGCT-TTCCTTTTTACAATACACCA
1 CAAAGGCTATT-CTTTTTACGAT-CACCA
87000737 CAAAGGCTATTCTTTTTACGATTCACCA
1 CAAAGGCTATTCTTTTTACGA-TCACCA
87000765 CAAAGGCTATTCTTTT
1 CAAAGGCTATTCTTTT
87000781 CTATCGTGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 59 0.94
29 4 0.06
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (27 bp):
CAAAGGCTATTCTTTTTACGATCACCA
Found at i:87003589 original size:44 final size:44
Alignment explanation
Indices: 87003516--87003602 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
87003506 TCTGGGGTGG
* * *
87003516 TACAGATTTTCCAAAACTCATTTTTGTGAGGTTTGCCCATCATT
1 TACAAATTTGCCAAAACTCATTTATGTGAGGTTTGCCCATCATT
*
87003560 TACAAATTTGCCAAAACTCATTTATGTGAGGTTTGCCTATCAT
1 TACAAATTTGCCAAAACTCATTTATGTGAGGTTTGCCCATCAT
87003603 CACATAGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (44 bp):
TACAAATTTGCCAAAACTCATTTATGTGAGGTTTGCCCATCATT
Found at i:87009373 original size:40 final size:40
Alignment explanation
Indices: 87009313--87009496 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 40
87009303 TATTTGAATG
* * * *
87009313 ATATCCGAGTTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
** * * *
87009353 ATATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
87009393 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
87009433 ATATCCGGGCTAAGTCTCGAAGGCATTTAAGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
87009473 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
87009497 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:87012060 original size:40 final size:40
Alignment explanation
Indices: 87012016--87012183 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
87012006 TCGCATACAA
*
87012016 CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAAC
* * * * *
87012056 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAAC
1 CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAAC
* *** *
87012096 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAAC
* *
87012136 CCGGATA-AAGTCACTAGCACA--ATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-A-CACACGAATGCCTTCGGGTCTTAAC
87012176 CCGGATAT
1 CCGGATAT
87012184 CATTCAATTG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.96
42 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAAC
Found at i:87012156 original size:80 final size:80
Alignment explanation
Indices: 87012033--87012183 Score: 243
Period size: 80 Copynumber: 1.9 Consensus size: 80
87012023 TAACCACACA
*
87012033 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAACCC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCC
87012098 GGATATAACAACTTG
66 GGATATAACAACTTG
* *
87012113 CACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATGCCTTCGGGTATTAAC
87012176 CCGGATAT
64 CCGGATAT
87012184 CATTCAATTG
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 63 0.95
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCC
GGATATAACAACTTG
Found at i:87023748 original size:19 final size:19
Alignment explanation
Indices: 87023724--87023769 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
87023714 CTTTCTTTCT
87023724 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
**
87023743 TTTGCATTGCATTGTATCA
1 TTTGCATTGCATTCCATCA
87023762 TTTGCATT
1 TTTGCATT
87023770 AGATTGTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:87031986 original size:64 final size:64
Alignment explanation
Indices: 87031905--87032030 Score: 234
Period size: 64 Copynumber: 2.0 Consensus size: 64
87031895 CTTCATAACG
87031905 CATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
1 CATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
* *
87031969 CATCTAGTTAGGTGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
87032031 AGATACATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (64 bp):
CATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
Found at i:87032550 original size:177 final size:177
Alignment explanation
Indices: 87032367--87033041 Score: 857
Period size: 177 Copynumber: 3.8 Consensus size: 177
87032357 TCAAGATGTT
* * *
87032367 GAATCTTATC-T-CCATGTATCAGCAATGGAGTAGATTTAAGCCACCAACCTTATCTCTCTAAGG
1 GAATCTTATCTTCCCATGTAT-AGCAGTGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGG
** * *
87032430 TAGCAAAAGAATAGGTTGGCGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGTAGACTGAAG
65 TAGCAAAAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
* *
87032495 ATTGAATATCTTATCTCTCTAAGCAGTAGTGGAGTAGATCGAAGATGGC
130 ATTGAAGATCTTATCTC-CTAAGCAGTTGTGGAGTAGATCGAAGATGGC
* * *
87032544 GAATCTTATCTT--TATGTATCGGCAGTGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGG
1 GAATCTTATCTTCCCATGTAT-AGCAGTGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGG
* *
87032607 TA-CAAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCCAGGAAGCAGATTGAA
65 TAGCAAA-AGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAA
* *
87032671 GATTCAAGATCTTATCTCCCTAAGAAGTTGTGGAGTAGATCGAAGATGGC
129 GATTGAAGATCTTATCT-CCTAAGCAGTTGTGGAGTAGATCGAAGATGGC
* * * * * * *
87032721 GAGTCTTATCTTCCCAAG-GTAGTAGGGGAGCATATTTTAGCCACCAACCTTATCTCT-T-AGGT
1 GAATCTTATCTTCCCATGTATAGCAGTGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGGT
* *
87032783 AGCAAGAGAGCAGGTTGTCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
66 AGCAAAAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* *
87032848 TTGAAGATCTTATTTACCTAAGCAGTTGTGGAGCAGATCGAAGATGGC
131 TTGAAGATCTTATCT-CCTAAGCAGTTGTGGAGTAGATCGAAGATGGC
* * * * * * * *
87032896 GAGTCTTATCTTCCCGA-G-GTAGTAGTGGAGTAGATTTTAGCCACCAGCCTTATTTCTTTGAGG
1 GAATCTTATCTTCCC-ATGTATAGCAGTGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGG
* * * *
87032959 TAGTAAGAGAGTAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCTGACTGAAG
65 TAGCAAAAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG
*
87033024 ATTGTAGATCTTATCTCC
130 ATTGAAGATCTTATCTCC
87033042 CTGATGTGGT
Statistics
Matches: 443, Mismatches: 46, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
175 154 0.35
176 12 0.03
177 272 0.61
178 3 0.01
179 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (177 bp):
GAATCTTATCTTCCCATGTATAGCAGTGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGGT
AGCAAAAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
TTGAAGATCTTATCTCCTAAGCAGTTGTGGAGTAGATCGAAGATGGC
Found at i:87032834 original size:352 final size:352
Alignment explanation
Indices: 87032400--87033043 Score: 963
Period size: 352 Copynumber: 1.8 Consensus size: 352
87032390 AATGGAGTAG
*
87032400 ATTTAAGCCACCAACCTTATCTCTCTAAGGTAGCAAAAGAATAGGTTGGCGATTGTAGTCTTATC
1 ATTTAAGCCACCAACCTTATCTCTCTAAGGTAGCAAAAGAACAGGTTGGCGATTGTAGTCTTATC
* *
87032465 TTCCTAAGGTAGCAAGGAAGTAGACTGAAGATTGAATATCTTATCT-CTCTAAGCAGTAGTGGAG
66 TTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTAC-CTAAGCAGTAGTGGAG
* * *
87032529 TAGATCGAAGATGGCGAATCTTATCTT-TATGTATCGGCAGTGGAGCAGATTTAAGCCACCAGCC
130 CAGATCGAAGATGGCGAATCTTATCTTCGAGGTA---GCAGTGGAGCAGATTTAAGCCACCAGCC
*
87032593 TTATCTCTCTGAGGTACAAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCCAG
192 TTATCTCTCTGAGGTACAAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAG
*
87032658 GAAGCAGATTGAAGATTCAAGATCTTATCTCCCTAAGAAGTTGTGGAGTAGATCGAAGATGGCGA
257 GAAGCAGACTGAAGATTCAAGATCTTATCTCCCTAAGAAGTTGTGGAGTAGATCGAAGATGGCGA
87032723 GTCTTATCTTCCCAAGGTAGTAGGGGAGCAT
322 GTCTTATCTTCCCAAGGTAGTAGGGGAGCAT
* * * *
87032754 ATTTTAGCCACCAACCTTATCTCT-T-AGGTAGCAAGAGAGCAGGTTGTCGATTGTAGTCTTATC
1 ATTTAAGCCACCAACCTTATCTCTCTAAGGTAGCAAAAGAACAGGTTGGCGATTGTAGTCTTATC
* * *
87032817 TTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATTTACCTAAGCAGTTGTGGAGC
66 TTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTACCTAAGCAGTAGTGGAGC
* * * *
87032882 AGATCGAAGATGGCGAGTCTTATCTTCCCGAGGTAGTAGTGGAGTAGATTTTAGCCACCAGCCTT
131 AGATCGAAGATGGCGAATCTTATCTT--CGAGGTAGCAGTGGAGCAGATTTAAGCCACCAGCCTT
* * ** *
87032947 ATTTCTTTGAGGTAGTAAGAGAGTAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGA
194 ATCTCTCTGAGGTACAAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGA
* **
87033012 AGCTGACTGAAGATTGTAGATCTTATCTCCCT
259 AGCAGACTGAAGATTCAAGATCTTATCTCCCT
87033044 GATGTGGTAG
Statistics
Matches: 259, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
352 230 0.89
353 2 0.01
354 23 0.09
355 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (352 bp):
ATTTAAGCCACCAACCTTATCTCTCTAAGGTAGCAAAAGAACAGGTTGGCGATTGTAGTCTTATC
TTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTACCTAAGCAGTAGTGGAGC
AGATCGAAGATGGCGAATCTTATCTTCGAGGTAGCAGTGGAGCAGATTTAAGCCACCAGCCTTAT
CTCTCTGAGGTACAAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAG
CAGACTGAAGATTCAAGATCTTATCTCCCTAAGAAGTTGTGGAGTAGATCGAAGATGGCGAGTCT
TATCTTCCCAAGGTAGTAGGGGAGCAT
Found at i:87036616 original size:20 final size:21
Alignment explanation
Indices: 87036573--87036618 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
87036563 ACTATTTTGT
87036573 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
87036593 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
87036612 TATGGGC
1 TATGGGC
87036619 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:87044634 original size:40 final size:40
Alignment explanation
Indices: 87044560--87044780 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
87044550 AACCCAAGTA
* *
87044560 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
87044599 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
87044639 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
87044679 CCTTCAGGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** * *
87044719 CCTTCGGGACTTAGCCTAGATATAGTCACTAGCAC-CATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
87044758 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
87044781 CGTCCGAATA
Statistics
Matches: 157, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 120 0.76
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:87049066 original size:2 final size:2
Alignment explanation
Indices: 87049059--87049096 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
87049049 TTATATTAAG
87049059 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87049097 TCTATGTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87049736 original size:18 final size:18
Alignment explanation
Indices: 87049694--87049736 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
87049684 TTTTTTGTTC
87049694 ATTTGTATAATATTTCAT
1 ATTTGTATAATATTTCAT
* * * *
87049712 CTATGTATATTGTTTCAT
1 ATTTGTATAATATTTCAT
87049730 ATTTGTA
1 ATTTGTA
87049737 ACCTTGATTT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (18 bp):
ATTTGTATAATATTTCAT
Found at i:87060331 original size:29 final size:29
Alignment explanation
Indices: 87060299--87060514 Score: 277
Period size: 29 Copynumber: 7.7 Consensus size: 29
87060289 ATACCCTCCG
** * *
87060299 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
87060328 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
87060357 AG-TACGCACACTTAGTGCCATATATTTCC
1 AGCT-CGCACACTTAGTGCCATATATTTCC
*
87060386 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
87060415 AGCACGCACACTTAGTGCC--A-ATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
87060441 AG--CACACACTTAGTGCC--ATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
87060466 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
87060495 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
87060515 ATCTCGTCAC
Statistics
Matches: 171, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
24 15 0.09
25 8 0.05
26 8 0.05
27 15 0.09
28 1 0.01
29 124 0.73
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:87060365 original size:58 final size:58
Alignment explanation
Indices: 87060303--87060514 Score: 312
Period size: 58 Copynumber: 3.8 Consensus size: 58
87060293 CCTCCGAGCT
** * * ** *
87060303 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCATATATTTCCAGTA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
87060361 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
87060419 CGCACACTTAGTGCC--A-ATTTCCAGCA--CACACTTAGTGCC--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
87060470 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
87060515 ATCTCGTCAC
Statistics
Matches: 141, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
51 27 0.19
53 14 0.10
54 10 0.07
55 10 0.07
56 14 0.10
58 66 0.47
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:87060495 original size:80 final size:82
Alignment explanation
Indices: 87060303--87060516 Score: 306
Period size: 80 Copynumber: 2.6 Consensus size: 82
87060293 CCTCCGAGCT
** * * ** *
87060303 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCATATATTTCCAGTACGCACAC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC--A-ATTTCCAG-ACACACAC
87060368 TTAGTGCCATATATTTCCAGCA
62 TTAGTGCCA-ATATTTCCAGCA
87060390 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATTTCCAG-CACACACTTAG
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATTTCCAGACACACACTTAG
87060454 TGCC-ATATTTCCAGCA
66 TGCCAATATTTCCAGCA
87060470 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAT
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAT
87060517 CTCGTCACCA
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
80 59 0.49
82 14 0.12
84 8 0.07
85 1 0.01
87 38 0.32
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATTTCCAGACACACACTTAG
TGCCAATATTTCCAGCA
Found at i:87068423 original size:47 final size:47
Alignment explanation
Indices: 87068351--87068500 Score: 138
Period size: 47 Copynumber: 3.0 Consensus size: 47
87068341 CCCTCCGAGC
* * **
87068351 TCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCTT
1 TCGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTT
**
87068398 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATT
1 TCGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCC-----TT
*
87068450 TCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 T-C-GCA--CAC-C-CAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
87068501 ATATATTTCC
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
47 39 0.46
52 3 0.04
53 1 0.01
54 3 0.04
56 3 0.04
58 36 0.42
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (47 bp):
TCGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTT
Found at i:87068441 original size:29 final size:29
Alignment explanation
Indices: 87068399--87068530 Score: 264
Period size: 29 Copynumber: 4.6 Consensus size: 29
87068389 TAGTGCCTTT
87068399 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87068428 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87068457 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87068486 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87068515 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
87068531 ATCTCGTCAC
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 103 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:87068481 original size:105 final size:104
Alignment explanation
Indices: 87068291--87068500 Score: 244
Period size: 105 Copynumber: 2.0 Consensus size: 104
87068281 TACTACTCGA
* * *
87068291 TTTCGCACACTTAGTGCCACGTAATTTAAGCCCGCACACACAGTGCCATACCCTCCGAGCTCGCA
1 TTTCGCACACTTAGTGCCAC-TAATTTAAGCACGCACACACAGTGCCATAACCTCCGAGCACGCA
* * **
87068356 CACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCC
65 CACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
* ** **
87068396 TTTCGCACACTTAGTGCCA-TATATTTCCAGCACGCACACTTAGTGCCATATATTTCC-AGCACG
1 TTTCGCACACTTAGTGCCACTA-ATTT-AAGCACGCACACACAGTGCCATA-ACCTCCGAGCACG
**
87068459 CACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
63 CACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
87068501 ATATATTTCC
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
103 2 0.02
104 4 0.05
105 79 0.90
106 3 0.03
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.27
Consensus pattern (104 bp):
TTTCGCACACTTAGTGCCACTAATTTAAGCACGCACACACAGTGCCATAACCTCCGAGCACGCAC
ACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
Found at i:87070870 original size:46 final size:46
Alignment explanation
Indices: 87070817--87070992 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
87070807 TATTTGGGCA
87070817 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
87070863 TCCGAACTCGTTGACTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * **
87070908 CATCC-AAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACA
1 --TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
87070956 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87070993 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 1 0.01
46 61 0.58
47 24 0.23
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:87070975 original size:93 final size:93
Alignment explanation
Indices: 87070813--87070984 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
87070803 AGGATATTTG
* * ***
87070813 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAC
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAC
87070878 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
87070906 GGCATCC-AAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGA
*
87070970 GTTGAGTCCGAGTTC
65 CTTGAGTCCGAGTTC
87070985 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAC
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:87075070 original size:40 final size:40
Alignment explanation
Indices: 87075025--87075154 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
87075015 CGGAATACAA
87075025 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
87075065 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
87075105 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
87075145 CCGGATATAA
1 CCGGATATAA
87075155 TTTCCAGCAG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:87076535 original size:16 final size:16
Alignment explanation
Indices: 87076516--87076549 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
87076506 TCTTATCTCT
87076516 CTTTTATCTTTTGCTG
1 CTTTTATCTTTTGCTG
87076532 CTTTTATCTTTTGCTG
1 CTTTTATCTTTTGCTG
87076548 CT
1 CT
87076550 CAACATGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.21, G:0.12, T:0.62
Consensus pattern (16 bp):
CTTTTATCTTTTGCTG
Found at i:87080794 original size:40 final size:40
Alignment explanation
Indices: 87080749--87080878 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
87080739 CGGAATACAA
87080749 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
87080789 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
87080829 CCGAATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
87080869 CCGGATATAA
1 CCGGATATAA
87080879 TTTCCAGCAG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:87085271 original size:39 final size:40
Alignment explanation
Indices: 87085062--87085285 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
87085052 GCTACTCACT
* *
87085062 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
87085102 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
87085142 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
87085182 CAAATGCCTTTGGGACTTAGCCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* ** * * *
87085222 CAAATGCCTTCGGGACTT-GCCCTGAACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
87085261 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
87085286 TTATCATCCA
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 32 0.19
40 133 0.80
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:87087923 original size:40 final size:41
Alignment explanation
Indices: 87087818--87087927 Score: 163
Period size: 40 Copynumber: 2.7 Consensus size: 41
87087808 GTTATAATAG
* *
87087818 CTCGCACAAATGCCTTCGGGA-CTTA-ACCCAGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGATCTTAGTCCGAGATTTGGGAA
*
87087858 CTCACACAAATGCCTTCGGATCTTAGTCCGA-ATTTGGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGAGATTTGGGAA
87087898 CTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CTCGCACAAATGCCTTCGGATCTTAGTCCG
87087928 GATATGGTCA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
39 3 0.05
40 58 0.91
41 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
CTCGCACAAATGCCTTCGGATCTTAGTCCGAGATTTGGGAA
Found at i:87087953 original size:40 final size:40
Alignment explanation
Indices: 87087821--87087953 Score: 130
Period size: 40 Copynumber: 3.3 Consensus size: 40
87087811 ATAATAGCTC
* * *
87087821 GCACAAATGCCTTCGGGA-CTTA-ACCCAGATTTGGGAACTCA
1 GCACAAATGCCTTC-GGATCTTAGTCCGA-ATATGGGAACT-A
* *
87087862 -CACAAATGCCTTCGGATCTTAGTCCGAATTTGGGAACTC
1 GCACAAATGCCTTCGGATCTTAGTCCGAATATGGGAACTA
* **
87087901 GCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGAATATGGGAAC-TA
87087942 GCACAAA-GCCTT
1 GCACAAATGCCTT
87087954 TGGGACTTAG
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
39 3 0.04
40 66 0.82
41 11 0.14
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGATCTTAGTCCGAATATGGGAACTA
Found at i:87091285 original size:28 final size:27
Alignment explanation
Indices: 87091194--87091287 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 27
87091184 CGAATGAATA
* * *
87091194 TGGGCACTATGTGTGCGAAATCAGTAAT
1 TGGGCACTATGTGTGCGAGATC-GTCAC
* * *
87091222 TGAGGCACTGTGTGTGCGAGTTCTTCAAC
1 TG-GGCACTATGTGTGCGAGATCGTC-AC
* *
87091251 TGAGCACTATGTGTGCGAGATCGGTCAG
1 TGGGCACTATGTGTGCGAGATC-GTCAC
87091279 TGGGCACTA
1 TGGGCACTA
87091288 AGTGCGTGAA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
28 29 0.57
29 22 0.43
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (27 bp):
TGGGCACTATGTGTGCGAGATCGTCAC
Found at i:87094775 original size:22 final size:22
Alignment explanation
Indices: 87094750--87094825 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
87094740 AAGTGTATAT
87094750 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
87094772 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
87094796 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
87094819 ATGTGAT
1 ATGTGAT
87094826 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:87094782 original size:47 final size:47
Alignment explanation
Indices: 87094728--87094900 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
87094718 ATGATGAAAT
87094728 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
87094775 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
87094822 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
87094869 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
87094901 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:87094813 original size:25 final size:25
Alignment explanation
Indices: 87094742--87094814 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
87094732 GAATGTGAAA
87094742 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
87094767 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
87094789 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
87094814 G
1 G
87094815 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:87102376 original size:40 final size:40
Alignment explanation
Indices: 87102332--87102479 Score: 158
Period size: 40 Copynumber: 3.7 Consensus size: 40
87102322 TAATAGCTCG
*
87102332 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAACTCA
1 CACAAATGCCTTC-GGATCTTAGCCCGGATTTGGGAACTCA
* * *
87102372 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGGAACTCG
1 CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
** * ** *
87102412 CACAAATGCCTTCGGATCTTATTCCGGATATGGTCACTTA
1 CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
87102452 GCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 -CACAAATGCCTTC-GGATCTTAGCCCGGA
87102480 CATCATTCGA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 80 0.87
41 9 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
Found at i:87102439 original size:80 final size:80
Alignment explanation
Indices: 87102296--87102479 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
87102286 GACTCGCTCA
* ** *
87102296 AAAGCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGATT-TAGGAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
87102360 TTTGGGAACTCA-CAC
65 TATGGGAACTCAGCAC
* **
87102375 AAATGCCTTC-GGATCTTAGTCCGGATTTAGGAACTCGCACAAATGCCTTC-GGATCTTATTCCG
1 AAA-GCCTTCGGGA-CTTAGCCCGGATTTAGGAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
** *
87102438 GATATGGTCACTTAGCAC
63 GATATGGGAACTCAGCAC
87102456 AAAGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGA
87102480 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
79 9 0.10
80 67 0.77
81 11 0.13
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
AAAGCCTTCGGGACTTAGCCCGGATTTAGGAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGGGAACTCAGCAC
Found at i:87107856 original size:23 final size:23
Alignment explanation
Indices: 87107830--87107873 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
87107820 TTATGAAACA
* *
87107830 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGACTTTGGCT
*
87107853 TATGATTTGGCATGATTTTGG
1 TATGATTTGGCATGACTTTGG
87107874 TATGGATATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.16, C:0.07, G:0.27, T:0.50
Consensus pattern (23 bp):
TATGATTTGGCATGACTTTGGCT
Found at i:87114615 original size:43 final size:42
Alignment explanation
Indices: 87114567--87114731 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 42
87114557 TTTCGATATG
*
87114567 TGATTTCGTGTAAGACCACGTCTGGGACATTGACATCGATTT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTT
* * * * *
87114609 GAGATTTCCGTATAAGACCATGTCTGCGACATCGGCATCGTATTT
1 -TGATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTT
* *
87114654 T-ATTTCGTGTAAGACC-CTATCTGGGACAATGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TT
* * * *
87114696 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
87114732 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 35 0.36
44 28 0.29
45 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTT
Found at i:87116025 original size:14 final size:13
Alignment explanation
Indices: 87115997--87116033 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
87115987 ATCCTGGAAT
87115997 ATTAA-AACAATA
1 ATTAAGAACAATA
87116009 ATTAAGAACACATA
1 ATTAAGAACA-ATA
87116023 ATTAAGAACAA
1 ATTAAGAACAA
87116034 GTCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:87118342 original size:40 final size:40
Alignment explanation
Indices: 87118297--87118379 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
87118287 CGGAATACAA
*
87118297 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTCGGGTCTTAGC
* *
87118337 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTCGGGTCTTAGC
87118377 CCG
1 CCG
87118380 TATGTAGCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGATAGAACCACGTGCACGAATGCCTTCGGGTCTTAGC
Found at i:87120400 original size:23 final size:23
Alignment explanation
Indices: 87120368--87120415 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
87120358 GGCGTTATAC
*
87120368 AAAATGAATCAAAATGCTAAAAT
1 AAAATAAATCAAAATGCTAAAAT
87120391 AAAATAAATCAAAATGCTAAAAT
1 AAAATAAATCAAAATGCTAAAAT
87120414 AA
1 AA
87120416 GCCAACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.21
Consensus pattern (23 bp):
AAAATAAATCAAAATGCTAAAAT
Found at i:87125548 original size:37 final size:37
Alignment explanation
Indices: 87125497--87125579 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
87125487 TTATTACGAA
*
87125497 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
87125534 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
*
87125571 GTCTCACCC
1 GTCTTACCC
87125580 GGAACATATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
Found at i:87125685 original size:48 final size:48
Alignment explanation
Indices: 87125627--87125778 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
87125617 TGTTACAACA
*
87125627 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
87125675 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
87125723 TTCACATTAGCCCTTCGGCTTTATCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
87125771 TTCACATT
1 TTCACATT
87125779 CATCACATCG
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:87125827 original size:49 final size:49
Alignment explanation
Indices: 87125770--87126105 Score: 595
Period size: 49 Copynumber: 6.9 Consensus size: 49
87125760 CACACATATA
*
87125770 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
87125819 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87125868 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87125915 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87125964 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87126013 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87126062 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
87126106 CATCTCATAC
Statistics
Matches: 275, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
47 45 0.16
49 230 0.84
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:87125923 original size:145 final size:146
Alignment explanation
Indices: 87125770--87126105 Score: 593
Period size: 145 Copynumber: 2.3 Consensus size: 146
87125760 CACACATATA
*
87125770 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
87125835 TCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
*
87125900 ATCAC-ATATATACTC
131 ATCACAATATATACAC
* *
87125915 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
87125980 TTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
87126045 ATCACATATATATACAC
131 ATCACA-ATATATACAC
*
87126062 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
87126106 CATCTCATAC
Statistics
Matches: 181, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
145 130 0.72
147 51 0.28
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
ATCACAATATATACAC
Found at i:87129902 original size:78 final size:80
Alignment explanation
Indices: 87129670--87129889 Score: 333
Period size: 78 Copynumber: 2.8 Consensus size: 80
87129660 CCAGCATGAT
* * * * *
87129670 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTT--GAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
87129733 CATCACTAGCACGAA
66 CATCACTAGCACGAA
87129748 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
87129813 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
87129828 TGCTCTTC-GAATTTAG-CCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
87129890 TAACCACAAG
Statistics
Matches: 132, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
77 7 0.05
78 81 0.61
79 7 0.05
80 37 0.28
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:87129902 original size:118 final size:118
Alignment explanation
Indices: 87129668--87129914 Score: 349
Period size: 118 Copynumber: 2.1 Consensus size: 118
87129658 CACCAGCATG
*
87129668 ATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTGAACTTAGTCCGGATA
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTGAACTTAGTCCGGATA
* * *
87129733 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAAACCACAAGCAC-A
** *
87129787 A-TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAATTTAG-CCGGAT
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTT-GAACTTAGTCCGGAT
* * *
87129850 ATATCATTAGCACGAATGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCACA
65 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA-AACCACAAGCACA
87129904 ATTGC-CTTCGG
1 ATTGCTCTTCGG
87129915 GTCTTAACCC
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
117 15 0.13
118 92 0.80
119 8 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (118 bp):
ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTGAACTTAGTCCGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAAACCACAAGCACA
Found at i:87129914 original size:39 final size:40
Alignment explanation
Indices: 87129670--87129889 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
87129660 CCAGCATGAT
* **
87129670 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
87129710 TGCTCTT--GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
87129748 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
87129788 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
87129828 TGCTCTTC-GAATTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
87129866 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAATTTAGCCCGGATA
87129890 TAACCACAAG
Statistics
Matches: 170, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 63 0.37
39 23 0.14
40 84 0.49
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
Found at i:87129932 original size:40 final size:40
Alignment explanation
Indices: 87129879--87130006 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
87129869 TCTTCGGAAT
*
87129879 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
* * * *
87129918 TTAACCCGGGTATAACAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCAC-AAGCACAAATGCCTTCGGGTC
** * * *
87129958 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
87129998 TTAGCCCGG
1 TTAGCCCGG
87130007 GTATCATTCA
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
39 4 0.05
40 68 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
Found at i:87129948 original size:118 final size:118
Alignment explanation
Indices: 87129687--87130003 Score: 317
Period size: 118 Copynumber: 2.7 Consensus size: 118
87129677 CGGGACCTAG
* * * * *
87129687 CCCGGATACATCACTAGCACGAATGCTCTT-GAACTTAGTCCGGATACATCACTAGCACGAATGC
1 CCCGGATACAACACTAGCACAAATGCTCTTCGAATTTAGCCCGGATATATCACTAGCACGAATGC
* * * *
87129751 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAG
66 TCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCTTCGGAATTTAA
* * *
87129805 CCCGGATACATCACTAGCACGAATGCTCTTCGAATTTAG-CCGGATATATCATTAGCACGAATGC
1 CCCGGATACAACACTAGCACAAATGCTCTTCGAATTTAGCCCGGATATATCACTAGCACGAATGC
* *
87129869 TCTTCGGAATTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGG-GTCTTAA
66 TCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCTTCGGAAT-TTAA
* * ** **
87129922 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA
1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGAAT-TTAGCCCGGATATA-TCACTAGCACGA
*
87129985 ATGC-CTTCGGGACTTAGCC
62 ATGCTCTTCGGAACTTAGCC
87130004 CGGGTATCAT
Statistics
Matches: 170, Mismatches: 20, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
116 1 0.01
117 33 0.19
118 93 0.55
119 30 0.18
120 13 0.08
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (118 bp):
CCCGGATACAACACTAGCACAAATGCTCTTCGAATTTAGCCCGGATATATCACTAGCACGAATGC
TCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCTTCGGAATTTAA
Found at i:87131963 original size:37 final size:37
Alignment explanation
Indices: 87131913--87132003 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
87131903 TTATTACGAA
87131913 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
87131950 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
87131987 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
87132004 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:87132101 original size:48 final size:48
Alignment explanation
Indices: 87132043--87132194 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
87132033 TGTTACAACA
*
87132043 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
87132091 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
87132139 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
87132187 TTCACATT
1 TTCACATT
87132195 CATCACATCG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:87132243 original size:49 final size:49
Alignment explanation
Indices: 87132186--87132615 Score: 755
Period size: 49 Copynumber: 8.9 Consensus size: 49
87132176 CACACATATA
*
87132186 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
87132235 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87132282 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87132329 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87132376 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87132425 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87132474 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
87132523 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
87132572 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
87132616 CATCTCATAC
Statistics
Matches: 369, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 136 0.37
49 233 0.63
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:87132320 original size:22 final size:22
Alignment explanation
Indices: 87132292--87132367 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
87132282 TTTCACATTC
87132292 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
87132314 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
87132338 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
87132361 ATCACAT
1 ATCACAT
87132368 ATATACTCTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:87139414 original size:2 final size:2
Alignment explanation
Indices: 87139407--87139434 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
87139397 AACATTAATC
87139407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87139435 TTACCATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87148221 original size:46 final size:46
Alignment explanation
Indices: 87148168--87148258 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
87148158 TAAATTAAGT
*
87148168 TAACCTCTTCGCCCAATGGCAAGAGCATTATATTGTAGGCATGAGA
1 TAACCTCTTCGCCCAATGGCAAGAGCATTATATTATAGGCATGAGA
* *
87148214 TAACCTCTTCGCCCAATGGCAAGAGCATTATGTTATATGCATGAG
1 TAACCTCTTCGCCCAATGGCAAGAGCATTATATTATAGGCATGAG
87148259 GGCCTAGGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (46 bp):
TAACCTCTTCGCCCAATGGCAAGAGCATTATATTATAGGCATGAGA
Found at i:87150682 original size:15 final size:15
Alignment explanation
Indices: 87150662--87150692 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
87150652 GCGGAGGTGG
87150662 AACCGAGGGGATAGT
1 AACCGAGGGGATAGT
87150677 AACCGAGGGGATAGT
1 AACCGAGGGGATAGT
87150692 A
1 A
87150693 CTAACAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.39, T:0.13
Consensus pattern (15 bp):
AACCGAGGGGATAGT
Found at i:87152783 original size:2 final size:2
Alignment explanation
Indices: 87152776--87152804 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
87152766 TAAAGAAGAA
87152776 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
87152805 ACAAATGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:87153679 original size:3 final size:3
Alignment explanation
Indices: 87153671--87153724 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
87153661 TTAATCTCTA
87153671 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
87153719 ATT ATT
1 ATT ATT
87153725 TTGTGAAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:87154086 original size:3 final size:3
Alignment explanation
Indices: 87154078--87154103 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
87154068 ACTTTTGTTT
87154078 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
87154104 TTGAAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:87155150 original size:23 final size:23
Alignment explanation
Indices: 87155122--87155175 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
87155112 ATGATAATAT
*
87155122 ATTTTTATATAATAAATCAAT-AAA
1 ATTTTGATA-AATAAAT-AATGAAA
*
87155146 ATTTTGATAAATAGATAATGAAA
1 ATTTTGATAAATAAATAATGAAA
87155169 ATTTTGA
1 ATTTTGA
87155176 ATTTATACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 16 0.59
24 8 0.30
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (23 bp):
ATTTTGATAAATAAATAATGAAA
Found at i:87161788 original size:29 final size:29
Alignment explanation
Indices: 87161754--87161812 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
87161744 GTCACAAGGT
* * *
87161754 CGTGTGTTGCATACGGCCTACCACACGAC
1 CGTGTGTCGCACACGACCTACCACACGAC
*
87161783 CGTGTGTCGCACACGACCTACCACATGAC
1 CGTGTGTCGCACACGACCTACCACACGAC
87161812 C
1 C
87161813 AGGCACACGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.37, G:0.22, T:0.19
Consensus pattern (29 bp):
CGTGTGTCGCACACGACCTACCACACGAC
Found at i:87162399 original size:14 final size:16
Alignment explanation
Indices: 87162376--87162408 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
87162366 GAATTTTAGG
87162376 AAAAAGAATT-AAATT
1 AAAAAGAATTAAAATT
87162391 AAAAA-AATTAAAATT
1 AAAAAGAATTAAAATT
87162406 AAA
1 AAA
87162409 TCAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
AAAAAGAATTAAAATT
Found at i:87173408 original size:27 final size:25
Alignment explanation
Indices: 87173370--87173431 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
87173360 ATATATGTAG
87173370 ATATAGTA-ATACATAATATAGTTAAAA
1 ATATA-TATATACAT-ATAT-GTTAAAA
*
87173397 ATATATATATACATATATGTTGAAA
1 ATATATATATACATATATGTTAAAA
*
87173422 ATAAATATAT
1 ATATATATAT
87173432 GGTGATATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 15 0.47
26 6 0.19
27 11 0.34
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.37
Consensus pattern (25 bp):
ATATATATATACATATATGTTAAAA
Found at i:87173429 original size:25 final size:27
Alignment explanation
Indices: 87173378--87173431 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 27
87173368 AGATATAGTA
*
87173378 ATACATAATATAGTTAAAAATATATAT
1 ATACATAATATAGTTAAAAATAAATAT
*
87173405 ATACAT-ATAT-GTTGAAAATAAATAT
1 ATACATAATATAGTTAAAAATAAATAT
87173430 AT
1 AT
87173432 GGTGATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 15 0.60
26 4 0.16
27 6 0.24
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (27 bp):
ATACATAATATAGTTAAAAATAAATAT
Found at i:87175270 original size:86 final size:86
Alignment explanation
Indices: 87175083--87175709 Score: 890
Period size: 86 Copynumber: 7.3 Consensus size: 86
87175073 ATTTCCAGCC
* * * * * *
87175083 TGTTACCCTACTGTTTAGGGGATTAAGGCTTGTT-ATCTTTGATCTGTTTCC-CTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
** * * *
87175146 G-TTTTAGATCTGTAATTCAACC
64 GAGATAAGATCTGCAATTCAACT
87175168 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
87175233 GATAAGATCTGCAATTCAACT
66 GATAAGATCTGCAATTCAACT
*
87175254 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTATTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
87175319 GATAAGATCTGCAATTCAACC
66 GATAAGATCTGCAATTCAACT
87175340 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
***
87175405 GATAAGATCTGCAATT-TGGT
66 GATAAGATCTGCAATTCAACT
* *
87175425 CTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 -TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
*
87175490 AGATAAGATCTGCAATTCAACC
65 AGATAAGATCTGCAATTCAACT
*
87175512 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
***
87175577 GATAAGATCTGCAATT-TGGT
66 GATAAGATCTGCAATTCAACT
* *
87175597 CTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCTGCTCCACTACTGC-TAGGG
1 -TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
***
87175661 AGATAAGATCTGCAATT-TGGT
65 AGATAAGATCTGCAATTCAACT
**
87175682 CTGTTTGCCTACTGCTTAGGGGTTTAAG
1 -TGTTACCCTACTGCTTAGGGGTTTAAG
87175710 ACCTTATGAA
Statistics
Matches: 501, Mismatches: 35, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
84 7 0.01
85 102 0.20
86 392 0.78
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGCAATTCAACT
Found at i:87175273 original size:42 final size:41
Alignment explanation
Indices: 87175124--87175702 Score: 267
Period size: 42 Copynumber: 13.5 Consensus size: 41
87175114 GTTATCTTTG
** * *
87175124 ATCTGTTTCCCTACTGCTTAGGG-TTTTAGATCTGTAATTCA
1 ATCTG-TTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * * ** *
87175165 ACCTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCG
1 ATCTGTT-CCCTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCA
*
87175209 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCA
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * ** *
87175251 A-CTTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCG
1 ATC-TGTT-CCCTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCA
* *
87175295 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAATTCA
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * * ** *
87175337 ACCTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCG
1 ATCTGTT-CCCTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCA
* **
87175381 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTG
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * ** *
87175423 GTCTGTTTCCCTACTGCTTAGGG-GTTTAAGATTCTTCGTCTTCG
1 ATCTG-TTCCCTACTGCTTAGGGAG-ATAAGA-TCTGC-AATTCA
*
87175467 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCA
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * * ** *
87175509 ACCTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCG
1 ATCTGTT-CCCTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCA
** **
87175553 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTG
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* * * ** *
87175595 GTCTGTTTCCCTACTGCTTAGGG-GTTTAAGATTCTTCGTCTTCG
1 ATCTG-TTCCCTACTGCTTAGGGAG-ATAAGA-TCTGC-AATTCA
* **
87175639 ATCTGCTCCACTACTGC-TAGGGAGATAAGATCTGCAATTTG
1 ATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCA
* *
87175680 GTCTGTTTGCCTACTGCTTAGGG
1 ATCTG-TTCCCTACTGCTTAGGG
87175703 GTTTAAGACC
Statistics
Matches: 400, Mismatches: 98, Indels: 79
0.69 0.17 0.14
Matches are distributed among these distances:
40 2 0.00
41 39 0.10
42 133 0.33
43 87 0.22
44 133 0.33
45 6 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (41 bp):
ATCTGTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCA
Found at i:87175450 original size:258 final size:258
Alignment explanation
Indices: 87175081--87175710 Score: 980
Period size: 258 Copynumber: 2.4 Consensus size: 258
87175071 TAATTTCCAG
* * * * * *
87175081 CCTGTTACCCTACTGTTTAGGGGATTAAGGCTTGTT-ATCTTTGATCTGTTTCC-CTACTGCTTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTA
** * * **** * *
87175144 GGG-TTTTAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTC
64 GGGAGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTC
*
87175208 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACTTGTTACCCTACTGCTTAGG
129 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGG
* *
87175273 GGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAATTCAA
194 GGTTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAA
87175338 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
87175403 GAGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGA
66 GAGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGA
87175468 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGG
131 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGG
***
87175533 TTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGG
196 TTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAA
* * *
87175596 TCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCTGCTCCACTACTGC-TAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
*
87175660 GAGATAAGATCTGCAATTTGGTCTGTTTGCCTACTGCTTAGGGGTTTAAGA
66 GAGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGA
87175711 CCTTATGAAC
Statistics
Matches: 344, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
256 7 0.02
257 105 0.31
258 232 0.67
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (258 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGA
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGG
TTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAA
Found at i:87176295 original size:26 final size:26
Alignment explanation
Indices: 87176266--87176375 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
87176256 TGATACAAAT
87176266 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87176292 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87176318 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87176344 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87176370 TGATAA
1 TGATAA
87176376 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87191767 original size:91 final size:94
Alignment explanation
Indices: 87191601--87191770 Score: 274
Period size: 91 Copynumber: 1.8 Consensus size: 94
87191591 GGATGGTTGA
**
87191601 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATACGAATGTCCGAACTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATACGAATCCCCGAACTCGTTGAG
*
87191666 TTGAGTCCGAGTTCGTGAAATGTAACTAG
66 GTGAGTCCGAGTTCGTGAAATGTAACTAG
* *
87191695 GCAT-CGAACTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCGAA-CCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATACGAATCCCCGAACTCGTTGAG
87191757 GTGAGTCCGAGTTC
66 GTGAGTCCGAGTTC
87191771 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 26 0.37
92 23 0.32
93 18 0.25
94 4 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (94 bp):
GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATACGAATCCCCGAACTCGTTGAG
GTGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:87193848 original size:29 final size:29
Alignment explanation
Indices: 87193815--87193888 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
87193805 CCTTCGAGCT
87193815 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
87193844 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87193873 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
87193889 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:87193849 original size:58 final size:58
Alignment explanation
Indices: 87193756--87193888 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
87193746 ATACTCGATT
* * * * *
87193756 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
87193814 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
87193872 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
87193889 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:87201708 original size:29 final size:29
Alignment explanation
Indices: 87201675--87201748 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
87201665 CCTTCGAGCT
87201675 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
87201704 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87201733 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
87201749 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:87201709 original size:58 final size:58
Alignment explanation
Indices: 87201616--87201748 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
87201606 ATACTCGATT
* * * * *
87201616 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
87201674 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
87201732 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
87201749 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:87208266 original size:43 final size:43
Alignment explanation
Indices: 87208110--87208266 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
87208100 ATGTGTTTTT
* * *
87208110 GTGTAGGACCACGTCTAGGACGTTGGTATCGAT-TTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTAC
* * * * * *
87208154 GTGTAAGATCATGTCTGGGACATCGACATCG-TATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
**
87208196 GTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTAC
* *
87208239 ATGTAAGACCACGTCTGGGATGTTGGCA
1 GTGTAAGACCACGTCTGGGACGTTGGCA
87208267 ATGTAAGAGC
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 29 0.32
43 36 0.40
44 25 0.28
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:87211273 original size:46 final size:46
Alignment explanation
Indices: 87211223--87211398 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
87211213 TGGTTGAGCA
87211223 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87211269 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
87211314 CATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
87211362 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87211399 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87211379 original size:93 final size:93
Alignment explanation
Indices: 87211220--87211390 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
87211210 GGATGGTTGA
* *
87211220 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87211285 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
87211313 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87211378 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87211391 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87218407 original size:27 final size:27
Alignment explanation
Indices: 87218374--87218435 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
87218364 CAAGACAATC
87218374 ATTTTACCCTATAAGGGTATTTTGATA
1 ATTTTACCCTATAAGGGTATTTTGATA
** *
87218401 ATTTTACATTATAAGGGTATTTTGGTA
1 ATTTTACCCTATAAGGGTATTTTGATA
87218428 ATTTTACC
1 ATTTTACC
87218436 AACCGGGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.47
Consensus pattern (27 bp):
ATTTTACCCTATAAGGGTATTTTGATA
Found at i:87218446 original size:54 final size:53
Alignment explanation
Indices: 87218388--87218596 Score: 204
Period size: 54 Copynumber: 3.9 Consensus size: 53
87218378 TACCCTATAA
* * **
87218388 GGGTATTTTGATAATTTTACATTATAAGGGTATTTTGGTAATTTTACCAACCGG
1 GGGTATTTCGATAATTTTACA-AATAAGGGTATTTCAGTAATTTTACCAACCGG
** * * *
87218442 GGGTATTTTAATAATTTTACAAATAGGAGGTACTTCAGTAATTTTA-CAATCCAG
1 GGGTATTTCGATAATTTTACAAATAAG-GGTATTTCAGTAATTTTACCAA-CCGG
* * * * *
87218496 GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAATAATTTTACAAATCGT
1 GGGTATTTCGATAATTTTACAAA-TAAGGGTATTTCAGTAATTTTACCAACCGG
* ** *
87218550 GGGTATTTCGATAATTTTATAAATCGGGAGTATTTCGGTAATTTTAC
1 GGGTATTTCGATAATTTTACAAATAAGG-GTATTTCAGTAATTTTAC
87218597 AAATCAGGGT
Statistics
Matches: 128, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 10 0.08
54 114 0.89
55 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
GGGTATTTCGATAATTTTACAAATAAGGGTATTTCAGTAATTTTACCAACCGG
Found at i:87218511 original size:81 final size:80
Alignment explanation
Indices: 87218415--87218599 Score: 223
Period size: 81 Copynumber: 2.3 Consensus size: 80
87218405 TACATTATAA
* * * *
87218415 GGGTATTTTGGTAATTTTACCAACCGGGGGTATTTTAATAATTTTACAAATAG-GAGGTACTTC-
1 GGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCAATAATTTTACAAATAGTG-GGTACTTCG
*
87218478 AGTAATTTTA-CAATCCAG
65 A-TAATTTTATAAAT-C-G
* * * *
87218496 GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAATAATTTTACAAATCGTGGGTATTTCGA
1 GGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCAATAATTTTACAAATAGTGGGTACTTCGA
87218561 TAATTTTATAAATCG
66 TAATTTTATAAATCG
87218576 GGAGTATTTCGGTAATTTTACAAA
1 GG-GTATTTCGGTAATTTTACAAA
87218600 TCAGGGTCTT
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
80 3 0.03
81 82 0.91
82 5 0.06
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (80 bp):
GGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCAATAATTTTACAAATAGTGGGTACTTCGA
TAATTTTATAAATCG
Found at i:87218600 original size:27 final size:26
Alignment explanation
Indices: 87218388--87218606 Score: 183
Period size: 27 Copynumber: 8.2 Consensus size: 26
87218378 TACCCTATAA
* * **
87218388 GGGTATTTTGATAATTTTACATTATAA
1 GGGTATTTCGATAATTTTACA-AATCG
* * * *
87218415 GGGTATTTTGGTAATTTTACCAACCGG
1 GGGTATTTCGATAATTTTACAAATC-G
** *
87218442 GGGTATTTTAATAATTTTACAAATAG
1 GGGTATTTCGATAATTTTACAAATCG
*
87218468 GAGGTACTTC-AGTAATTTTAC-AATCCAG
1 G-GGTATTTCGA-TAATTTTACAAAT-C-G
87218496 GGGTATTTCGATAATTTTACAAA-CTG
1 GGGTATTTCGATAATTTTACAAATC-G
*
87218522 AGGGTATTTCAATAATTTTACAAATCG
1 -GGGTATTTCGATAATTTTACAAATCG
*
87218549 TGGGTATTTCGATAATTTTATAAATCG
1 -GGGTATTTCGATAATTTTACAAATCG
* *
87218576 GGAGTATTTCGGTAATTTTACAAATCA
1 GG-GTATTTCGATAATTTTACAAATCG
87218603 GGGT
1 GGGT
87218607 CTTAACGACC
Statistics
Matches: 159, Mismatches: 23, Indels: 21
0.78 0.11 0.10
Matches are distributed among these distances:
26 13 0.08
27 140 0.88
28 6 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GGGTATTTCGATAATTTTACAAATCG
Found at i:87219952 original size:24 final size:24
Alignment explanation
Indices: 87219925--87219970 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
87219915 TCCTTAAATC
*
87219925 TCTCCATAA-ATCACTCCTTGATTT
1 TCTCC-TAATATCACTCCATGATTT
*
87219949 TCTCCTAATATCTCTCCATGAT
1 TCTCCTAATATCACTCCATGAT
87219971 ACACTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.24, C:0.30, G:0.04, T:0.41
Consensus pattern (24 bp):
TCTCCTAATATCACTCCATGATTT
Found at i:87222084 original size:43 final size:43
Alignment explanation
Indices: 87221927--87222085 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
87221917 TATGTGTTTT
* * *
87221927 CGTGTAGGACCACGTTTGGGACGTTGGCATCGAT-TTATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTA
* * * * * *
87221971 TGTGTAAGACCATGTCTAGGACATCGACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
* *
87222013 CGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTA
* *
87222056 CATGTAAGACCACGTCTAGGTCGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
87222086 TATATGAGCT
Statistics
Matches: 88, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 27 0.31
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:87224116 original size:40 final size:40
Alignment explanation
Indices: 87224035--87224138 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
87224025 CTCGCACGAA
* **
87224035 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
87224075 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
*
87224115 TGTCTTCGGG-CTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
87224139 CATTCAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:87227135 original size:93 final size:93
Alignment explanation
Indices: 87227022--87227193 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
87227012 GCCCATAAGT
* *
87227022 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCAATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCAATAAGTGAACTCGGACTCAACTCAA
87227087 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
87227115 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCAATAAGTGAACTCGGACTCAACTCAA
87227180 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
87227194 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCAATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87227189 original size:46 final size:46
Alignment explanation
Indices: 87227014--87227189 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
87227004 TGTAACCCGC
* * *
87227014 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
87227060 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
87227110 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
87227153 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87227190 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.61
47 32 0.29
48 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:87227208 original size:46 final size:45
Alignment explanation
Indices: 87227065--87227208 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
87227055 CGCATCAATA
* *
87227065 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
87227113 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
87227158 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
87227204 AGTGA
1 AGTGA
87227209 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Done.