Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 29 of 378
Found at i:7067186 original size:26 final size:26
Alignment explanation
Indices: 7067150--7067231 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
7067140 CATGAAATTC
7067150 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7067176 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7067202 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7067228 TTAT
1 TTAT
7067232 TAATTTGTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7069660 original size:18 final size:17
Alignment explanation
Indices: 7069637--7069670 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7069627 AAACATATTT
*
7069637 TTATTATTTTAGTCATTC
1 TTATTAATTTA-TCATTC
7069655 TTATTAATTTATCATT
1 TTATTAATTTATCATT
7069671 ACATAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATTAATTTATCATTC
Found at i:7071430 original size:2 final size:2
Alignment explanation
Indices: 7071423--7071464 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7071413 ATTTAAAAGA
7071423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7071465 GAAGATTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7074527 original size:3 final size:3
Alignment explanation
Indices: 7074249--7074309 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
7074239 TTAATTAATT
* * * * *
7074249 TTA TTA TTT TTA CTA TTA TTA TTA TTA TAA ATA -TA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
7074296 TTG TTA TTA TTA TT
1 TTA TTA TTA TTA TT
7074310 TACATGTTAT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7074580 original size:24 final size:23
Alignment explanation
Indices: 7074553--7074605 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
7074543 AATATTTTTG
7074553 TTATTATTAT-TATTTTTTACCATA
1 TTATTATT-TCTATTTTTTA-CATA
*
7074577 TTATTATTTCCTATTTTTTATATA
1 TTATTATTT-CTATTTTTTACATA
7074601 TTATT
1 TTATT
7074606 GTCGAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 1 0.04
24 16 0.62
25 9 0.35
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (23 bp):
TTATTATTTCTATTTTTTACATA
Found at i:7075351 original size:132 final size:132
Alignment explanation
Indices: 7075180--7075579 Score: 450
Period size: 132 Copynumber: 3.0 Consensus size: 132
7075170 ATTTTTAGAA
* * * * *
7075180 TTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTAAACAAA-TAGGAAATTGC
1 TTTTAGAAAACATGAGTGAAATTCAAAAGGAATCTTCGATTATTTTGAACAAACGA-GAAATTGC
* * * *
7075244 AACCCAGCACAATAGGGCACGATTCCCCGAGTTTCCAAACATCGAGTATT-ACTGTCGTTTTGAA
65 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTGACT-TCGTTTTAAA
7075308 GAGT
129 GAGT
* * * * * *
7075312 CTTTTA-AAGATATGAGTGAAATTCCAAAGGAATCTTCGATTGTTTCGAACAAACGAGAAATCGC
1 -TTTTAGAAAACATGAGTGAAATTCAAAAGGAATCTTCGATTATTTTGAACAAACGAGAAATTGC
* * * *
7075376 AACCCAGCACGATAGGGCACGATT-CTCAAATTGCCAAACACCGAGTATTGCCTTCGTTTTAAAG
65 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTGACTTCGTTTTAAAG
7075440 AGT
130 AGT
* * * * *
7075443 TTTTAGAAAACGTAAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAGATTGCA
1 TTTTAGAAAACATGAGTGAAATTCAAAAGGAATCTTCGATTATTTTGAACAAACGAGAAATTGCA
* ** ** *
7075508 ACCCAACACGATAGGGCACGATTCTGCGAATTGCCAAACATCGAACATTG-CTTTCGTTTTCAAG
66 ACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTGAC-TTCGTTTTAAAG
*
7075572 AAT
130 AGT
7075575 TTTTA
1 TTTTA
7075580 AATGGATAAT
Statistics
Matches: 225, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
130 5 0.02
131 104 0.46
132 110 0.49
133 6 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (132 bp):
TTTTAGAAAACATGAGTGAAATTCAAAAGGAATCTTCGATTATTTTGAACAAACGAGAAATTGCA
ACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTGACTTCGTTTTAAAGA
GT
Found at i:7075480 original size:131 final size:130
Alignment explanation
Indices: 7075101--7075581 Score: 443
Period size: 132 Copynumber: 3.7 Consensus size: 130
7075091 TATCTAGCCC
* * * * * * *
7075101 AACGAGAAAATTGAAACCCAGCAC-AGTAGGGCACGACTCCTCGAATTTCTAGATATC-AGACAT
1 AACGAG-AAATTGCAACCCAGCACGA-TAGGGCACGA-TTCTCGAATTGCCAAACATCGAG-TAT
* * * * * * ** **
7075164 TGCCTT-ATTTT-TAGAATTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTA
62 TGCCTTCGTTTTAAAGAGTTTTTAAAAACATAAGTGAAATTCAAAAGGAACCTTCGATTATTTCG
7075227 AACA
127 AACA
* * * * *
7075231 AA-TAGGAAATTGCAACCCAGCACAATAGGGCACGATTCCCCGAGTTTCCAAACATCGAGTATT-
1 AACGA-GAAATTGCAACCCAGCACGATAGGGCACGATT-CTCGAATTGCCAAACATCGAGTATTG
* * * * * * * *
7075294 ACTGTCGTTTTGAAGAGTCTTTTAAAGATATGAGTGAAATTCCAAAGGAATCTTCGATTGTTTCG
64 CCT-TCGTTTTAAAGAGT-TTTTAAAAACATAAGTGAAATTCAAAAGGAACCTTCGATTATTTCG
7075359 AACA
127 AACA
* * *
7075363 AACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCTCAAATTGCCAAACACCGAGTATTGCC
1 AACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAGTATTGCC
* * *
7075428 TTCGTTTTAAAGAGTTTTTAGAAAACGTAAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAAC
66 TTCGTTTTAAAGAGTTTTTA-AAAACATAAGTGAAATTCAAAAGGAACCTTCGATTATTTCGAAC
7075493 A
130 A
* * **
7075494 AACGAGAGATTGCAACCCAACACGATAGGGCACGATTCTGCGAATTGCCAAACATCGAACATTGC
1 AACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCT-CGAATTGCCAAACATCGAGTATTGC
* * *
7075559 TTTCGTTTTCAAGAATTTTTAAA
65 CTTCGTTTTAAAGAGTTTTTAAA
7075582 TGGATAATTA
Statistics
Matches: 289, Mismatches: 50, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
128 3 0.01
129 44 0.15
130 15 0.05
131 111 0.38
132 115 0.40
133 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (130 bp):
AACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAGTATTGCC
TTCGTTTTAAAGAGTTTTTAAAAACATAAGTGAAATTCAAAAGGAACCTTCGATTATTTCGAACA
Found at i:7078076 original size:3 final size:3
Alignment explanation
Indices: 7078068--7078220 Score: 73
Period size: 3 Copynumber: 51.0 Consensus size: 3
7078058 GCCCGTTACA
* ** * * *
7078068 ATT ATT ATT GTT ATT AAC ATAT ATT ATT ATT ATT A-A AGT ACT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * **
7078113 ATT -TCCT ATT ATT ATT AAT ACT AAT ATC ACT ATT ACC ATT -TT -TT
1 ATT AT--T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
7078157 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ACT ATCT AAT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
*
7078202 ATT ATT ATAC ATT ATT ATT
1 ATT ATT AT-T ATT ATT ATT
7078221 TTTTATATTA
Statistics
Matches: 112, Mismatches: 29, Indels: 18
0.70 0.18 0.11
Matches are distributed among these distances:
2 8 0.07
3 96 0.86
4 7 0.06
5 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.55
Consensus pattern (3 bp):
ATT
Found at i:7078304 original size:23 final size:25
Alignment explanation
Indices: 7078261--7078322 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
7078251 TTTTAGCACA
7078261 CTTATTTTATTTATATATCATTACC
1 CTTATTTTATTTATATATCATTACC
7078286 CTTATTATTA-TTAT-T-TCATTA--
1 CTTATT-TTATTTATATATCATTACC
*
7078307 TTTATTTTATTTATAT
1 CTTATTTTATTTATAT
7078323 CTTTTTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 3 0.09
21 9 0.27
22 1 0.03
23 6 0.18
24 1 0.03
25 10 0.30
26 3 0.09
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (25 bp):
CTTATTTTATTTATATATCATTACC
Found at i:7078401 original size:3 final size:3
Alignment explanation
Indices: 7078393--7078573 Score: 75
Period size: 3 Copynumber: 60.3 Consensus size: 3
7078383 GTATTCACCG
* * * *
7078393 TTA TTA TTA CTA TTA -TA TTCA CTT- TTA TTA CTA TTA CTA CTA TT-
1 TTA TTA TTA TTA TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
7078437 TTT TTA GTT- TCTA TTA CTA TTA TCA TTA TTA TTA ATA CTA ATA TTA
1 TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
7078483 ATA TTC TTA TTA TTA CTT- TTA TTA TTA TCA TCA GTA TTA TTA TTT
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * ** *
7078528 TTA CTA CTA CTA TTA TTA TTA TCA ACA TTA TTA TTA TTT TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7078574 CGTTTTCATC
Statistics
Matches: 135, Mismatches: 33, Indels: 20
0.72 0.18 0.11
Matches are distributed among these distances:
2 9 0.07
3 118 0.87
4 6 0.04
5 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.01, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:7078420 original size:24 final size:25
Alignment explanation
Indices: 7078374--7078427 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 25
7078364 ATTATTGTTG
*
7078374 TTACTATTTGTATTCACCGTTATTA
1 TTACTATTTATATTCACCGTTATTA
7078399 TTACTA-TTATATTCA-C-TT-TTA
1 TTACTATTTATATTCACCGTTATTA
7078420 TTACTATT
1 TTACTATT
7078428 ACTACTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 9 0.33
22 3 0.11
23 1 0.04
24 8 0.30
25 6 0.22
ACGTcount: A:0.26, C:0.15, G:0.04, T:0.56
Consensus pattern (25 bp):
TTACTATTTATATTCACCGTTATTA
Found at i:7078521 original size:39 final size:39
Alignment explanation
Indices: 7078478--7078573 Score: 129
Period size: 39 Copynumber: 2.5 Consensus size: 39
7078468 TTAATACTAA
* * * *
7078478 TATTAATATTCTTATTATTACTTTTATTATTATCATCAG
1 TATTATTATTTTTATTATTACTATTATTATTATCAACAG
* * *
7078517 TATTATTATTTTTACTACTACTATTATTATTATCAACAT
1 TATTATTATTTTTATTATTACTATTATTATTATCAACAG
7078556 TATTATTATTTTTATTAT
1 TATTATTATTTTTATTAT
7078574 CGTTTTCATC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.58
Consensus pattern (39 bp):
TATTATTATTTTTATTATTACTATTATTATTATCAACAG
Found at i:7080204 original size:3 final size:3
Alignment explanation
Indices: 7080196--7080235 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
7080186 TCAGTATTAT
7080196 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7080236 ACTTGAGTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7084040 original size:2 final size:2
Alignment explanation
Indices: 7084035--7084059 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7084025 ATTTTTTTAA
7084035 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7084060 ATCACTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7084324 original size:14 final size:14
Alignment explanation
Indices: 7084305--7084360 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
7084295 TCAGAAAATA
*
7084305 TAAAATAAGATATT
1 TAAAATAATATATT
* *
7084319 TAAAATATTTTATT
1 TAAAATAATATATT
7084333 TCAAAAT-ATA-ATT
1 T-AAAATAATATATT
*
7084346 TAAAATAAAATATT
1 TAAAATAATATATT
7084360 T
1 T
7084361 TAATATAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
12 5 0.15
13 6 0.18
14 17 0.52
15 5 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (14 bp):
TAAAATAATATATT
Found at i:7084427 original size:25 final size:24
Alignment explanation
Indices: 7084399--7084491 Score: 79
Period size: 25 Copynumber: 3.9 Consensus size: 24
7084389 ATTAAGAATA
*
7084399 TTATTAAATTATATATTATTATTTT
1 TTATTAAA-TATATATTATAATTTT
7084424 TTATTAAATATA-ATTTAATAATATTT
1 TTATTAAATATATA-TT-ATAAT-TTT
* *
7084450 ATATTAAA-ATATGATTA-AATTAT
1 TTATTAAATATAT-ATTATAATTTT
7084473 TTATTAAAT-TATATT-TAAT
1 TTATTAAATATATATTATAAT
7084492 AATAATCCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
22 6 0.11
23 13 0.23
24 9 0.16
25 16 0.28
26 12 0.21
27 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (24 bp):
TTATTAAATATATATTATAATTTT
Found at i:7096868 original size:3 final size:3
Alignment explanation
Indices: 7096860--7096981 Score: 166
Period size: 3 Copynumber: 41.7 Consensus size: 3
7096850 ATTTTATTTC
7096860 TAT TAT TAT TAT TAT TATT TAT TAT TAT TAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
7096905 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7096951 T-T TAT T-T TAT TTT TAAT TATT TAT TA- TAT TA
1 TAT TAT TAT TAT TAT T-AT TA-T TAT TAT TAT TA
7096982 ATAAAATTCT
Statistics
Matches: 108, Mismatches: 2, Indels: 18
0.84 0.02 0.14
Matches are distributed among these distances:
2 12 0.11
3 88 0.81
4 8 0.07
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:7097146 original size:42 final size:42
Alignment explanation
Indices: 7097094--7097188 Score: 145
Period size: 42 Copynumber: 2.3 Consensus size: 42
7097084 TCACTATCAT
* * *
7097094 TATTCTAGCCCAAAATGCCATATCCCTGCTGCCAAACAGTTC
1 TATTCCAGCCCAAAATGCCATATCCCTGCAGCCAAACAGTCC
* *
7097136 TATTCCAGCCCAGAATGCCATATCTCTGCAGCCAAACAGTCC
1 TATTCCAGCCCAAAATGCCATATCCCTGCAGCCAAACAGTCC
7097178 TATTCCAGCCC
1 TATTCCAGCCC
7097189 TGGAATCCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.24
Consensus pattern (42 bp):
TATTCCAGCCCAAAATGCCATATCCCTGCAGCCAAACAGTCC
Found at i:7097869 original size:22 final size:22
Alignment explanation
Indices: 7097844--7097888 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7097834 ACACTTAAAA
7097844 TGATTGCATGCTTAATTAATGT
1 TGATTGCATGCTTAATTAATGT
7097866 TGATTGCATGCTTAATTAATGT
1 TGATTGCATGCTTAATTAATGT
7097888 T
1 T
7097889 CATGGCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.47
Consensus pattern (22 bp):
TGATTGCATGCTTAATTAATGT
Found at i:7098205 original size:118 final size:118
Alignment explanation
Indices: 7097997--7098227 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 118
7097987 TGTTTTCCAT
* * *
7097997 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACTGGGGTAGGGTGCTTGAGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACTCGGGTAGGGTGCTTGAGTTGTCATT
*
7098062 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGTCGA
66 CTACTTCGCATCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGTCGA
** *
7098115 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACTCGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACTCGGGTAGGGTGCTTGAGTTGTCATT
****
7098180 CTACTTCGCATCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCATCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
7098228 ACCGGAAATA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 102 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACTCGGGTAGGGTGCTTGAGTTGTCATT
CTACTTCGCATCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGTCGA
Found at i:7101385 original size:26 final size:26
Alignment explanation
Indices: 7101356--7101437 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
7101346 TGATACAAAT
*
7101356 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGTTTAGGTAAATGTTCCA
7101382 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGTTTAGGTAAATGTTCCA
*
7101408 TGATAATGGTTTAGGTAAATGTTACA
1 TGATAATGGTTTAGGTAAATGTTCCA
7101434 TGAT
1 TGAT
7101438 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGTTTAGGTAAATGTTCCA
Found at i:7106240 original size:26 final size:26
Alignment explanation
Indices: 7106211--7106315 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
7106201 TGGTACAAAT
7106211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
7106237 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7106263 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7106289 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7106315 T
1 T
7106316 ATGGGAATTT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7107822 original size:26 final size:26
Alignment explanation
Indices: 7107793--7107845 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7107783 TTTACAGTTT
7107793 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
7107819 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
7107845 T
1 T
7107846 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:7111443 original size:22 final size:23
Alignment explanation
Indices: 7111404--7111452 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
7111394 ATGCATGGCG
*
7111404 TATATATAAAAACGTATACGTA-A
1 TATATATAAAAACATATA-GTATA
*
7111427 TATA-ATAAAAATATATAGTATA
1 TATATATAAAAACATATAGTATA
7111449 TATA
1 TATA
7111453 CATGTTAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 16 0.70
23 4 0.17
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
TATATATAAAAACATATAGTATA
Found at i:7116199 original size:26 final size:26
Alignment explanation
Indices: 7116170--7116274 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
7116160 TGGTACAAAT
7116170 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
7116196 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7116222 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7116248 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7116274 T
1 T
7116275 ATGGGAATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7117766 original size:26 final size:26
Alignment explanation
Indices: 7117737--7117789 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7117727 TTTACAGTTT
*
7117737 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
7117763 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
7117789 T
1 T
7117790 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:7119943 original size:17 final size:17
Alignment explanation
Indices: 7119921--7119956 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7119911 TTCACTCAAC
*
7119921 TTTTAAAATTTATATAT
1 TTTTAAAAATTATATAT
7119938 TTTTAAAAATTATATAT
1 TTTTAAAAATTATATAT
7119955 TT
1 TT
7119957 ATCATTTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAAAATTATATAT
Found at i:7122772 original size:21 final size:22
Alignment explanation
Indices: 7122748--7122793 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
7122738 GACATTTAAG
*
7122748 AAATATGA-TAAAATCAAA-TTA
1 AAATA-GAGTAAAATAAAACTTA
7122769 AAATAGAGTAAAATAAAACTTA
1 AAATAGAGTAAAATAAAACTTA
7122791 AAA
1 AAA
7122794 AAGACAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 2 0.09
21 14 0.64
22 6 0.27
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.24
Consensus pattern (22 bp):
AAATAGAGTAAAATAAAACTTA
Found at i:7130407 original size:36 final size:36
Alignment explanation
Indices: 7130357--7130427 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
7130347 GACCATTTAC
7130357 GGCACTATTCACGTATACAGCACTATTCACGTATAA
1 GGCACTATTCACGTATACAGCACTATTCACGTATAA
* * *
7130393 GGCACTATTTACGTATACAGTACTGTTCACGTATA
1 GGCACTATTCACGTATACAGCACTATTCACGTATA
7130428 CAGTAGTTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (36 bp):
GGCACTATTCACGTATACAGCACTATTCACGTATAA
Found at i:7130432 original size:18 final size:18
Alignment explanation
Indices: 7130358--7130430 Score: 103
Period size: 18 Copynumber: 4.1 Consensus size: 18
7130348 ACCATTTACG
7130358 GCACTATTCACGTATACA
1 GCACTATTCACGTATACA
7130376 GCACTATTCACGTATA-A
1 GCACTATTCACGTATACA
*
7130393 GGCACTATTTACGTATACA
1 -GCACTATTCACGTATACA
* *
7130412 GTACTGTTCACGTATACA
1 GCACTATTCACGTATACA
7130430 G
1 G
7130431 TAGTTGGGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.02
18 47 0.96
19 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (18 bp):
GCACTATTCACGTATACA
Found at i:7134475 original size:11 final size:11
Alignment explanation
Indices: 7134455--7134508 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
7134445 TTAGAATATA
*
7134455 CCCATTCCTTG
1 CCCATACCTTG
7134466 CCCATACCTTG
1 CCCATACCTTG
*
7134477 CCCATACCTTT
1 CCCATACCTTG
*
7134488 CCCATACC-TA
1 CCCATACCTTG
7134498 CCCATACCTTG
1 CCCATACCTTG
7134509 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7145250 original size:23 final size:23
Alignment explanation
Indices: 7145178--7145253 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 23
7145168 CGATCCTCAT
7145178 ATTTTTTCGTTTTGAGCAATTTA
1 ATTTTTTCGTTTTGAGCAATTTA
* * *
7145201 A--TTTT--TTTTGCATCGATCCTCA
1 ATTTTTTCGTTTTG-AGCAAT--TTA
7145223 TATTTTTTCGTTTTGAGCAATTTA
1 -ATTTTTTCGTTTTGAGCAATTTA
7145247 ATTTTTT
1 ATTTTTT
7145254 TTTGTTCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
19 5 0.13
20 4 0.10
21 4 0.10
22 2 0.05
23 9 0.23
24 2 0.05
25 4 0.10
26 4 0.10
27 5 0.13
ACGTcount: A:0.20, C:0.12, G:0.11, T:0.58
Consensus pattern (23 bp):
ATTTTTTCGTTTTGAGCAATTTA
Found at i:7145257 original size:47 final size:46
Alignment explanation
Indices: 7145166--7145255 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
7145156 AATTTATACA
7145166 ATCGATCCTCATATTTTTTCGTTTTGAGCAATTTAATTTTTTTTGC
1 ATCGATCCTCATATTTTTTCGTTTTGAGCAATTTAATTTTTTTTGC
7145212 ATCGATCCTCATATTTTTTCGTTTTGAGCAATTTAATTTTTTTT
1 ATCGATCCTCATATTTTTTCGTTTTGAGCAATTTAATTTTTTTT
7145256 TGTTCTTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.56
Consensus pattern (46 bp):
ATCGATCCTCATATTTTTTCGTTTTGAGCAATTTAATTTTTTTTGC
Found at i:7159715 original size:43 final size:43
Alignment explanation
Indices: 7159668--7159832 Score: 233
Period size: 43 Copynumber: 3.9 Consensus size: 43
7159658 GAATAATAAA
* * * *
7159668 ATCGGGCTTCAAGCCTAGCATGCTATAATACCGGTGAGTTAAT
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGAGTTAAT
7159711 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGAGTTAAT
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGAGTTAAT
* *
7159754 ATCGGGCTTCGAGCCTAGTAGGCTATAATGCTGGTGAGTTAAT
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGAGTTAAT
* * * *
7159797 ATCAGGCTTTGAGCCTAGCAGGC-GTAATGCCGGTGA
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGA
7159833 ATGAGTTCAA
Statistics
Matches: 111, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 11 0.10
43 100 0.90
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
ATCGGGCTTCGAGCCTAGCAGGCTATAATGCAGGTGAGTTAAT
Found at i:7168405 original size:19 final size:19
Alignment explanation
Indices: 7168381--7168432 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
7168371 AACGCCTCTT
7168381 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCATT-A
7168400 TTTGCATTACATTTCATTA
1 TTTGCATTACATTTCATTA
* *
7168419 TATGCATTAAATTT
1 TTTGCATTACATTT
7168433 TATGAAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 21 0.70
20 9 0.30
ACGTcount: A:0.27, C:0.15, G:0.06, T:0.52
Consensus pattern (19 bp):
TTTGCATTACATTTCATTA
Found at i:7181757 original size:29 final size:29
Alignment explanation
Indices: 7181702--7181760 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
7181692 AAAGGCATCC
7181702 AAAAAGAAAAACAAAAGTACAAAAATAGAA
1 AAAAAGAAAAACAAAAG-ACAAAAATAGAA
**
7181732 AAAAAGAAAAGGAAAAG-CAAACAATAGAA
1 AAAAAGAAAAACAAAAGACAAA-AATAGAA
7181761 CAAAGGTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 4 0.15
29 7 0.27
30 15 0.58
ACGTcount: A:0.75, C:0.07, G:0.14, T:0.05
Consensus pattern (29 bp):
AAAAAGAAAAACAAAAGACAAAAATAGAA
Found at i:7183486 original size:64 final size:64
Alignment explanation
Indices: 7183412--7183603 Score: 321
Period size: 64 Copynumber: 3.0 Consensus size: 64
7183402 TCATTCATAA
** *
7183412 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGTATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
*
7183476 CACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
7183540 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCTTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
7183604 GATACATGAA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 120 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:7184084 original size:177 final size:178
Alignment explanation
Indices: 7183761--7184243 Score: 471
Period size: 177 Copynumber: 2.7 Consensus size: 178
7183751 GCAGATCATA
* * * *
7183761 ACAAGTCTTATCTCCCTGAGGTTGTAGTGGAGTAGATTGAAGATTGTAGGTCTTATTTCCCTAAG
1 ACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAGATTGAAGATCTTATTTCCCTAAG
* * * * * * * *
7183826 CAGTAGTGGAA-CAGACCAAAGACGATGAGTCTTATCTCTATGTACCGGCAATGGAGTAGA-TTT
66 CAGTAGT-GAAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGAAATGGAGCAGATTTT
* * * **
7183889 AAGTCACCAGCCTTATCTCCCTAAAGTTGC-AGTGGAGCAGGCT-CAATAT
130 AAGCCACCAGCATTATCTCCCTAAAGTAGCAAG-AAAGCAGGCTGCAAT-T
* * * *
7183938 ACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAAATTGAAAATCTTATCTCCTTAAG
1 ACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAGATTGAAGATCTTATTTCCCTAAG
* * * * *
7184003 CAGTAGTGAAGCAGATTGAAGATGGTGAATCTTATCTCCATTTATCAGAAACGGAGCAGATTTTA
66 CAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGAAATGGAGCAGATTTTA
* * *** * *
7184068 A-CCA-CTGACATTATCTCTCTGTGGTAGCAAGAAAGCAGGTTGGCGATT
131 AGCCACCAG-CATTATCTCCCTAAAGTAGCAAGAAAGCAGGCT-GCAATT
** * * * *
7184116 -GTAGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGATC-TATTTCCCTAA
1 ACAAGTCTTATCTCCCTGAGGTTGC-AGTGGAGTAGACTGAAGATTGAAGATCTTATTTCCCTAA
* * *
7184178 GCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGTAATGGAGCAGGTTTT
65 GCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGAAATGGAGCAGATTTT
7184243 A
130 A
7184244 TCACTGGCCT
Statistics
Matches: 248, Mismatches: 51, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
176 72 0.29
177 163 0.66
178 10 0.04
179 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (178 bp):
ACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAGATTGAAGATCTTATTTCCCTAAG
CAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGAAATGGAGCAGATTTTA
AGCCACCAGCATTATCTCCCTAAAGTAGCAAGAAAGCAGGCTGCAATT
Found at i:7184237 original size:176 final size:176
Alignment explanation
Indices: 7183941--7184303 Score: 496
Period size: 176 Copynumber: 2.1 Consensus size: 176
7183931 TCAATATACA
* * * * *
7183941 AGTCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAAATTGAAAATCTTATCTCCTTAAGCAG
1 AGTCTTATCTTCCTGAGGTAGCAGTGAAGCAGACTGAAAATTGAAAATCTTATCTCCCTAAGCAG
* *
7184006 TAGTGAAGCAGATTGAAGATGGTGAATCTTATCTCCATTTATCAGAAACGGAGCAGATTTTAACC
66 TAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGAAACGGAGCAGATTTT-ACC
* *
7184071 ACTGACATTATCTCTCTGTGGTAGCAAGAAAGCAGGTTGGCGATTGT
130 ACTGACATTATCTCTCTGAGGTAGCAAGAAAGCAGATTGGCGATTGT
* * *
7184118 AGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGATC-TATTTCCCTAAGCA
1 AGTCTTATCTTCCTGAGGTAGC-AGTGAAGCAGACTGAAAATTGAAAATCTTATCTCCCTAAGCA
* * * * * * *
7184181 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATCGGTAATGGAGCAGGTTTTATC
65 GTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGAAACGGAGCAGATTTTACC
* * *
7184246 ACTGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGGCGATTGT
130 ACTGACATTATCTCTCTGAGGTAGCAAGAAAGCAGATTGGCGATTGT
7184293 AGTCTTATCTT
1 AGTCTTATCTT
7184304 TTTGAGGCAA
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
175 55 0.34
176 66 0.40
177 40 0.25
178 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (176 bp):
AGTCTTATCTTCCTGAGGTAGCAGTGAAGCAGACTGAAAATTGAAAATCTTATCTCCCTAAGCAG
TAGTGAAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGAAACGGAGCAGATTTTACCA
CTGACATTATCTCTCTGAGGTAGCAAGAAAGCAGATTGGCGATTGT
Found at i:7184455 original size:43 final size:45
Alignment explanation
Indices: 7184396--7184497 Score: 136
Period size: 43 Copynumber: 2.3 Consensus size: 45
7184386 AGCCTCAGGC
* *
7184396 CTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTG-AG-T
1 CTTATCTCTCTAAGGTAGCAAGAAAGCAGATTGAAGATTGAAGAT
* * *
7184439 CTTATCTTTCTGAGGTAGTAAGAAAGCAGATTGAAGATTGAAGAT
1 CTTATCTCTCTAAGGTAGCAAGAAAGCAGATTGAAGATTGAAGAT
*
7184484 CTTATCTCCCTAAG
1 CTTATCTCTCTAAG
7184498 CAGTTGTGGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 35 0.71
44 2 0.04
45 12 0.24
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (45 bp):
CTTATCTCTCTAAGGTAGCAAGAAAGCAGATTGAAGATTGAAGAT
Found at i:7187385 original size:32 final size:33
Alignment explanation
Indices: 7187360--7187431 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 33
7187350 AATCCTCTAC
*
7187360 CTCTGAAGATGCTATCATGGCAAAT-CTTATCT
1 CTCTGAAGATGCTATCATAGCAAATCCTTATCT
7187392 CTCTGAAGATGCTATCATAGCAAAT-CTTATCT
1 CTCTGAAGATGCTATCATAGCAAATCCTTATCT
*
7187424 ATCTGAAG
1 CTCTGAAG
7187432 TTGTAGTGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (33 bp):
CTCTGAAGATGCTATCATAGCAAATCCTTATCT
Found at i:7187750 original size:138 final size:138
Alignment explanation
Indices: 7187501--7187752 Score: 294
Period size: 138 Copynumber: 1.8 Consensus size: 138
7187491 TTGAAATTAC
*** ** * *
7187501 GAATCTTATCTCCCTGAAGTTGCAGTGCAGTGGATAGAAACCACTAGTCTCATCTCCTTGAAGTT
1 GAATCTTATCTCCCTGAAGTTGCAGTGCAGCAAATAGAAACCACTAACCTCATCTCCTTGAAATA
* *
7187566 GCAGTAGAGCAGATTAAAGCTATAAATCCTATACCTCTGAAGTTGCAGTAGGATGGATCAAATAT
66 GCAGTAGAGCAGATTAAAGCTATAAATCCTATACCCCTAAAGTTGCAGTAGGATGGATCAAATAT
7187631 GCCATGGT
131 GCCATGGT
* * * * *
7187639 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCCATTACACCTTATCTCCTTGAAAT
1 GAATCTTATCTCCCTGAAGTTGCAGTGCAGCAAATAGAAACCACTA-ACCTCATCTCCTTGAAAT
* * * *
7187704 AGCAGTGGAGCAGGTTAAAG-T-TAAAGTCTTAT-CTCCCTAAATTTGCAGT
65 AGCAGTAGAGCAGATTAAAGCTATAAA-TCCTATAC-CCCTAAAGTTGCAGT
7187753 GGAACAGATT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
137 5 0.05
138 57 0.61
139 31 0.33
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (138 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGCAGCAAATAGAAACCACTAACCTCATCTCCTTGAAATA
GCAGTAGAGCAGATTAAAGCTATAAATCCTATACCCCTAAAGTTGCAGTAGGATGGATCAAATAT
GCCATGGT
Found at i:7193991 original size:27 final size:27
Alignment explanation
Indices: 7193943--7194155 Score: 206
Period size: 27 Copynumber: 7.9 Consensus size: 27
7193933 GCGAGGCTGC
* *
7193943 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
7193970 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
7193996 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7194023 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
7194050 CAGTTATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7194077 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
7194104 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7194131 CAGATAATTATGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
7194156 GACACTTCCT
Statistics
Matches: 156, Mismatches: 18, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 12 0.08
27 137 0.88
28 7 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7194033 original size:54 final size:54
Alignment explanation
Indices: 7193961--7194159 Score: 319
Period size: 54 Copynumber: 3.7 Consensus size: 54
7193951 GTGACGAAGT
* * * *
7193961 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
7194015 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGTTATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
7194069 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
7194123 CACCAGATCAGATAATTATGGCATAGCCACCAGGACA
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACA
7194160 CTTCCTCCAT
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
53 4 0.03
54 132 0.97
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:7195809 original size:26 final size:26
Alignment explanation
Indices: 7195778--7195885 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
7195768 TGAAATTCCC
7195778 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
7195804 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* * * *
7195830 ATCATGGAATATTAATCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
7195856 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
7195882 ATCA
1 ATCA
7195886 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
25 3 0.04
26 67 0.93
27 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:7195857 original size:52 final size:52
Alignment explanation
Indices: 7195778--7195885 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
7195768 TGAAATTCCC
* *
7195778 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTAACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* * *
7195830 ATCATGGAATATTAATCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTAACCTAAACCATTATCATGGAACATTTACCTAACCCATT
7195882 ATCA
1 ATCA
7195886 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTAACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:7198259 original size:8 final size:7
Alignment explanation
Indices: 7198231--7198258 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
7198221 CTAGGCTTTC
7198231 CTTTTTT
1 CTTTTTT
7198238 CTTTTTT
1 CTTTTTT
7198245 CTTTTTT
1 CTTTTTT
7198252 CTTTTTT
1 CTTTTTT
7198259 TGCATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
CTTTTTT
Found at i:7199498 original size:25 final size:25
Alignment explanation
Indices: 7199470--7199520 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7199460 ATAAAAAAGA
7199470 AAGATCTAGGGTTTTGTAGGAAATT
1 AAGATCTAGGGTTTTGTAGGAAATT
7199495 AAGATCTAGGGTTTTGTAGGAAATT
1 AAGATCTAGGGTTTTGTAGGAAATT
7199520 A
1 A
7199521 CTTTAACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (25 bp):
AAGATCTAGGGTTTTGTAGGAAATT
Found at i:7201804 original size:82 final size:79
Alignment explanation
Indices: 7201695--7201926 Score: 268
Period size: 81 Copynumber: 2.8 Consensus size: 79
7201685 TTATACATTA
*
7201695 GCTAAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGTCGCTAAAAACTGAGCAATAGTGGCA
1 GCTAAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACG-CGCAAAAAACTGAG-AATAGTGGC-
* *
7201760 TTTTTATCCAAAATGCC
63 GTTTTATCCAAAACGCC
* * *
7201777 GCTAAAAACTGATCAATAGTGGTGTTTTCATCCAAAACGCTGCAAAAAACTGAGAAATAGTGGCG
1 GCTAAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGC-GCAAAAAACTGAG-AATAGTGGCG
*
7201842 TTTTATCCAAAACGCT
64 TTTTATCCAAAACGCC
* * * * * *
7201858 GC-AAAAAATAGAGAAATAATGGCGTTTTTGTCAAAAACGCCGCAAAAAACTGAGATATAGTGGT
1 GCTAAAAACT-GAGCAATAGTGGCGTTTTTATCCAAAACG-CGCAAAAAACTGAGA-ATAGTGGC
7201922 GTTTT
63 GTTTT
7201927 TGTTCCAAAC
Statistics
Matches: 129, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 7 0.05
81 64 0.50
82 58 0.45
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (79 bp):
GCTAAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGCGCAAAAAACTGAGAATAGTGGCGTT
TTATCCAAAACGCC
Found at i:7201928 original size:41 final size:40
Alignment explanation
Indices: 7201698--7201945 Score: 259
Period size: 41 Copynumber: 6.1 Consensus size: 40
7201688 TACATTAGCT
* *
7201698 AAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGTCGCT
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCGCA
* * *
7201739 AAAAACTGAGCAATAGTGGCATTTTTATCCAAAATGCCGCT
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCGCA
* * * *
7201780 AAAAACTGATCAATAGTGGTGTTTTCATCCAAAACGCTGCA
1 AAAAACTGA-GAATAGTGGCGTTTTTATCCAAAACGCCGCA
*
7201821 AAAAACTGAGAAATAGTGGCG-TTTTATCCAAAACGCTGCA
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCGCA
* * *
7201861 AAAAA-TAGAGAAATAATGGCGTTTTTGTCAAAAACGCCGCA
1 AAAAACT-GAG-AATAGTGGCGTTTTTATCCAAAACGCCGCA
* * *
7201902 AAAAACTGAGATATAGTGGTGTTTTTGTTCC-AAACGCCACA
1 AAAAACTGAGA-ATAGTGGCGTTTTT-ATCCAAAACGCCGCA
7201943 AAA
1 AAA
7201946 GGTTGAGCTA
Statistics
Matches: 178, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 37 0.21
41 137 0.77
42 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (40 bp):
AAAAACTGAGAATAGTGGCGTTTTTATCCAAAACGCCGCA
Found at i:7201938 original size:122 final size:123
Alignment explanation
Indices: 7201698--7201926 Score: 313
Period size: 122 Copynumber: 1.9 Consensus size: 123
7201688 TACATTAGCT
* * * *
7201698 AAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGTCGCTAAAAACTGAGCAATAGTGGCATTT
1 AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGTCGCTAAAAAATGAGAAATAATGGCATTT
* * *
7201763 TTATCCAAAATGCCGCTAAAAACTGATCAATAGTGGTGTTTTCATCCAAAACGCTGCA
66 TTATCAAAAACGCCGCAAAAAACTGATCAATAGTGGTGTTTTCATCCAAAACGCTGCA
*
7201821 AAAAACTGAGAAATAGTGGCG-TTTTATCCAAAACG-CTGC-AAAAAATAGAGAAATAATGGCGT
1 AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGTC-GCTAAAAAAT-GAGAAATAATGGCAT
* *
7201883 TTTTGTCAAAAACGCCGCAAAAAACTGA-GATATAGTGGTGTTTT
64 TTTTATCAAAAACGCCGCAAAAAACTGATCA-ATAGTGGTGTTTT
7201927 TGTTCCAAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
121 8 0.09
122 65 0.70
123 20 0.22
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (123 bp):
AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGTCGCTAAAAAATGAGAAATAATGGCATTT
TTATCAAAAACGCCGCAAAAAACTGATCAATAGTGGTGTTTTCATCCAAAACGCTGCA
Found at i:7202738 original size:14 final size:15
Alignment explanation
Indices: 7202719--7202752 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7202709 AAACCCTTAT
7202719 ACCCTAAA-TTATAA
1 ACCCTAAATTTATAA
*
7202733 ACCCTAAATTTGTAA
1 ACCCTAAATTTATAA
7202748 ACCCT
1 ACCCT
7202753 GGAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.41, C:0.26, G:0.03, T:0.29
Consensus pattern (15 bp):
ACCCTAAATTTATAA
Found at i:7203295 original size:32 final size:32
Alignment explanation
Indices: 7203259--7203319 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
7203249 AACGCCACAA
7203259 ATGTGTATAACGAGTCCAAAAAATGACGCTGT
1 ATGTGTATAACGAGTCCAAAAAATGACGCTGT
7203291 ATGTGTATAACGAGTCCAAAAAATGACGC
1 ATGTGTATAACGAGTCCAAAAAATGACGC
7203320 CATATTATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (32 bp):
ATGTGTATAACGAGTCCAAAAAATGACGCTGT
Found at i:7203896 original size:20 final size:20
Alignment explanation
Indices: 7203870--7203922 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
7203860 CTCCACCCAA
*
7203870 ATTTCCCCAAATCACTAACT
1 ATTTCCCCAAATCACTAAAT
* *
7203890 -TTTTCCCTAATCACTAAAT
1 ATTTCCCCAAATCACTAAAT
*
7203909 ATTTCCCCGAATCA
1 ATTTCCCCAAATCA
7203923 AAATTGAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.32, C:0.32, G:0.02, T:0.34
Consensus pattern (20 bp):
ATTTCCCCAAATCACTAAAT
Found at i:7203961 original size:19 final size:19
Alignment explanation
Indices: 7203939--7203976 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7203929 AAATATCCTT
7203939 CTGCCGTTGAAGACTCCGA
1 CTGCCGTTGAAGACTCCGA
7203958 CTGCCGTTGAAGACTCCGA
1 CTGCCGTTGAAGACTCCGA
7203977 GTGGATGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (19 bp):
CTGCCGTTGAAGACTCCGA
Found at i:7210922 original size:17 final size:17
Alignment explanation
Indices: 7210902--7210960 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
7210892 TTAAAATTTT
7210902 TTTATATAATCTCTACG
1 TTTATATAATCTCTACG
* * **
7210919 TTTATTTATAACCTTTATTT
1 TTTA--TATAATCTCTA-CG
7210939 TTTATATAATCTCTACG
1 TTTATATAATCTCTACG
7210956 TTTAT
1 TTTAT
7210961 TTATAACCTT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
17 9 0.29
18 9 0.29
19 9 0.29
20 4 0.13
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTATATAATCTCTACG
Found at i:7210928 original size:21 final size:21
Alignment explanation
Indices: 7210902--7210965 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 21
7210892 TTAAAATTTT
7210902 TTTATATAATCTCTACGTTTA
1 TTTATATAATCTCTACGTTTA
* *
7210923 -TT-TATAACCTTTA--TTT-
1 TTTATATAATCTCTACGTTTA
7210939 TTTATATAATCTCTACGTTTA
1 TTTATATAATCTCTACGTTTA
7210960 TTTATA
1 TTTATA
7210966 ACCTTTCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 5 0.15
18 9 0.26
19 9 0.26
20 5 0.15
21 6 0.18
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.56
Consensus pattern (21 bp):
TTTATATAATCTCTACGTTTA
Found at i:7210944 original size:37 final size:37
Alignment explanation
Indices: 7210899--7210971 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
7210889 TCTTTAAAAT
7210899 TTTTTTATATAATCTCTACGTTTATTTATAACCTTTA
1 TTTTTTATATAATCTCTACGTTTATTTATAACCTTTA
7210936 TTTTTTATATAATCTCTACGTTTATTTATAACCTTT
1 TTTTTTATATAATCTCTACGTTTATTTATAACCTTT
7210972 CTTTAATTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.58
Consensus pattern (37 bp):
TTTTTTATATAATCTCTACGTTTATTTATAACCTTTA
Found at i:7211439 original size:9 final size:9
Alignment explanation
Indices: 7211427--7211879 Score: 96
Period size: 9 Copynumber: 51.0 Consensus size: 9
7211417 ATATCATATA
7211427 ATAACTTAC
1 ATAACTTAC
7211436 ATAACTTAC
1 ATAACTTAC
*
7211445 AAAACTTAC
1 ATAACTTAC
7211454 ATAA--TAC
1 ATAACTTAC
*
7211461 ATAAATATATATC
1 AT-AA-CT-TA-C
* *
7211474 ATAA-ATAT
1 ATAACTTAC
*
7211482 ATATCATATA-
1 ATAAC-T-TAC
*
7211492 ATAACTTAA
1 ATAACTTAC
* *
7211501 AAAACTTAT
1 ATAACTTAC
*
7211510 ATACCTTAC
1 ATAACTTAC
*
7211519 A-AA-ATAC
1 ATAACTTAC
* *
7211526 ATAA-ATAT
1 ATAACTTAC
*
7211534 ATAACATATC
1 ATAACTTA-C
7211544 ATAACTTAC
1 ATAACTTAC
7211553 ATAACTTAC
1 ATAACTTAC
*
7211562 AAAACTTAC
1 ATAACTTAC
7211571 ATAA--TAC
1 ATAACTTAC
*
7211578 ATAAATATATATC
1 AT-AA-CT-TA-C
* *
7211591 ATAA-ATAT
1 ATAACTTAC
*
7211599 ATATCATATA-
1 ATAAC-T-TAC
7211609 ATAACTTAC
1 ATAACTTAC
* *
7211618 AAAACTTAT
1 ATAACTTAC
*
7211627 ATACCTTAC
1 ATAACTTAC
*
7211636 A-AA-ATAC
1 ATAACTTAC
* *
7211643 ATAA-ATAT
1 ATAACTTAC
*
7211651 ATAACATATC
1 ATAACTTA-C
7211661 ATAACTTAC
1 ATAACTTAC
7211670 ATAACTTAC
1 ATAACTTAC
*
7211679 AAAACTTAC
1 ATAACTTAC
7211688 ATAA--TAC
1 ATAACTTAC
* *
7211695 ATAA-ATAT
1 ATAACTTAC
*
7211703 ATATCATATA-
1 ATAAC-T-TAC
7211713 ATAACTTAC
1 ATAACTTAC
*
7211722 ATAACTTAT
1 ATAACTTAC
* *
7211731 ATACCTTTC
1 ATAACTTAC
*
7211740 AGAA--TAC
1 ATAACTTAC
* *
7211747 ATAA-ATAT
1 ATAACTTAC
* *
7211755 ATATCATATC
1 ATAACTTA-C
7211765 ATAACTTAC
1 ATAACTTAC
*
7211774 ACAACTTAC
1 ATAACTTAC
7211783 ATAA--TAC
1 ATAACTTAC
* *
7211790 ATAA-ATAT
1 ATAACTTAC
* *
7211798 ATATCATATC
1 ATAACTTA-C
7211808 ATAACTTAC
1 ATAACTTAC
7211817 AT-ACTTTAC
1 ATAAC-TTAC
* *
7211826 ATAAATGTAT
1 ATAACT-TAC
* *
7211836 ATCA-TAAC
1 ATAACTTAC
*
7211844 AAAACTTAC
1 ATAACTTAC
7211853 ATAACTTAC
1 ATAACTTAC
7211862 A-AAGCTTAC
1 ATAA-CTTAC
*
7211871 TTAACTTAC
1 ATAACTTAC
7211880 GTAATACATA
Statistics
Matches: 331, Mismatches: 70, Indels: 86
0.68 0.14 0.18
Matches are distributed among these distances:
7 37 0.11
8 58 0.18
9 170 0.51
10 46 0.14
11 6 0.02
12 8 0.02
13 6 0.02
ACGTcount: A:0.50, C:0.16, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7211466 original size:52 final size:52
Alignment explanation
Indices: 7211410--7211783 Score: 338
Period size: 52 Copynumber: 6.7 Consensus size: 52
7211400 ATCTTAATGT
7211410 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
* * *
7211462 TAAATATATATCATAAATATATATCATATA-ATAACTTAAAAAACTTATATACCTTACAAAATAC
1 TAAATATATATCAT--ATA-ATAAC-T-TACATAACTT-----AC--A-A-AACTTACATAATAC
7211526 A
52 A
* *
7211527 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
* *
7211579 TAAATATATATCATAAATATATATCATATA-ATAACTTACAAAACTTATATACCTTACAAAATAC
1 TAAATATATATCAT--ATA-ATAAC-T-TACATAACTTAC---A---A-A-A-CTTACATAATAC
7211643 A
52 A
* *
7211644 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
* * * * *
7211696 TAAATATATATCATATAATAACTTACATAACTTATATACCTTTCAGAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
* *
7211748 TAAATATATATCATATCATAACTTACACAACTTACA
1 TAAATATATATCATATAATAACTTACATAACTTACA
7211784 TAATACATAA
Statistics
Matches: 266, Mismatches: 26, Indels: 60
0.76 0.07 0.17
Matches are distributed among these distances:
52 130 0.49
53 2 0.01
54 7 0.03
55 9 0.03
56 20 0.08
57 4 0.02
58 1 0.00
59 1 0.00
60 4 0.02
61 20 0.08
62 9 0.03
63 6 0.02
64 2 0.01
65 51 0.19
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (52 bp):
TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
Found at i:7211492 original size:15 final size:13
Alignment explanation
Indices: 7211460--7211494 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
7211450 TTACATAATA
7211460 CATAAATATATAT
1 CATAAATATATAT
7211473 CATAAATATATAT
1 CATAAATATATAT
7211486 CATATAATA
1 CATA-AATA
7211495 ACTTAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:7211542 original size:117 final size:117
Alignment explanation
Indices: 7211410--7211783 Score: 576
Period size: 117 Copynumber: 3.3 Consensus size: 117
7211400 ATCTTAATGT
* *
7211410 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
1 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
7211475 TAAATATATATCATATAATAACTTAAAAAACTTATATACCTTACAAAATACA
66 TAAATATATATCATATAATAACTTAAAAAACTTATATACCTTACAAAATACA
7211527 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
1 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
*
7211592 TAAATATATATCATATAATAACTTACAAAACTTATATACCTTACAAAATACA
66 TAAATATATATCATATAATAACTTAAAAAACTTATATACCTTACAAAATACA
7211644 TAAATATATAACATATCATAACTTACATAACTTAC-AAA---AC-T--TAC----ATA-ATA-CA
1 TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
* * * *
7211696 TAAATATATATCATATAATAACTTACATAACTTATATACCTTTCAGAATACA
66 TAAATATATATCATATAATAACTTAAAAAACTTATATACCTTACAAAATACA
* *
7211748 TAAATATATATCATATCATAACTTACACAACTTACA
1 TAAATATATAACATATCATAACTTACATAACTTACA
7211784 TAATACATAA
Statistics
Matches: 248, Mismatches: 8, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
104 84 0.34
105 3 0.01
106 3 0.01
110 3 0.01
112 1 0.00
113 2 0.01
116 3 0.01
117 149 0.60
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (117 bp):
TAAATATATAACATATCATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCA
TAAATATATATCATATAATAACTTAAAAAACTTATATACCTTACAAAATACA
Found at i:7211609 original size:15 final size:13
Alignment explanation
Indices: 7211577--7211611 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
7211567 TTACATAATA
7211577 CATAAATATATAT
1 CATAAATATATAT
7211590 CATAAATATATAT
1 CATAAATATATAT
7211603 CATATAATA
1 CATA-AATA
7211612 ACTTACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:7211613 original size:65 final size:62
Alignment explanation
Indices: 7211427--7211688 Score: 219
Period size: 65 Copynumber: 4.3 Consensus size: 62
7211417 ATATCATATA
*
7211427 ATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATA
1 ATAACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATAAATATA-A-C-T-TA
7211492 -
62 C
* * * * * *
7211492 ATAACTTAAAAAACTTATATACCTTACAAAATACAT--A-A-ATAT-AT-AACAT-A--T-C
1 ATAACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATAAATATAACTTAC
* *
7211544 ATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATA
1 ATAACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCAT-AA-ATATAAC-T-TA
7211609 -
62 C
* * * * *
7211609 ATAACTTACAAAACTTATATACCTTACAAAATACATAAATATATAACAT--ATCATAACTTAC
1 ATAACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATAAAT-ATAACTTAC
7211670 ATAACTTACAAAACTTACA
1 ATAACTTACAAAACTTACA
7211689 TAATACATAA
Statistics
Matches: 157, Mismatches: 23, Indels: 38
0.72 0.11 0.17
Matches are distributed among these distances:
52 31 0.20
54 1 0.01
55 1 0.01
56 4 0.03
57 3 0.02
59 5 0.03
60 7 0.04
61 25 0.16
62 5 0.03
63 1 0.01
65 74 0.47
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (62 bp):
ATAACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATAAATATAACTTAC
Found at i:7211717 original size:43 final size:43
Alignment explanation
Indices: 7211631--7211817 Score: 182
Period size: 43 Copynumber: 4.1 Consensus size: 43
7211621 ACTTATATAC
* * *
7211631 CTTACAAAA--TACATAAATATATAACATATCATAACTTA-CATAA
1 CTTACAAAACTTACAT-AATACATAA-ATAT-ATATCATATCATAA
*
7211674 CTTACAAAACTTACATAATACATAAATATATATCATATAATAA
1 CTTACAAAACTTACATAATACATAAATATATATCATATCATAA
* *
7211717 CTTACATAACTTATATACCTTTCAGAATACATAAATATATATCATATCATAA
1 CTTAC---A---A-A-A-CTTACATAATACATAAATATATATCATATCATAA
*
7211769 CTTACACAACTTACATAATACATAAATATATATCATATCATAA
1 CTTACAAAACTTACATAATACATAAATATATATCATATCATAA
7211812 CTTACA
1 CTTACA
7211818 TACTTTACAT
Statistics
Matches: 122, Mismatches: 10, Indels: 24
0.78 0.06 0.15
Matches are distributed among these distances:
42 6 0.05
43 60 0.49
44 9 0.07
45 6 0.05
46 1 0.01
49 2 0.02
50 1 0.01
51 1 0.01
52 36 0.30
ACGTcount: A:0.49, C:0.17, G:0.01, T:0.33
Consensus pattern (43 bp):
CTTACAAAACTTACATAATACATAAATATATATCATATCATAA
Found at i:7211720 original size:95 final size:96
Alignment explanation
Indices: 7211620--7211895 Score: 276
Period size: 95 Copynumber: 2.9 Consensus size: 96
7211610 TAACTTACAA
* *
7211620 AACTTATATACCTTACA-AAATACATAAATATATAACATATCATAACTTACATAACTTACAAAAC
1 AACTTACATACCTTACATAAATACATAAATACATAACATATCATAACTTACATAACTTACAAAAC
7211684 TTACATAATACATAAATATATATCATATAAT
66 TTACATAATACATAAATATATATCATATAAT
* * ** * * * * *
7211715 AACTTACATAACTTATATACCTTTCA-GAATACATAA-ATAT-ATATCATATCATAACTTACACA
1 AACTTACATACCTTACATA-AATACATAAATACATAACATATCATAACTTA-CATAACTTACAAA
*
7211777 ACTTACATAATACATAAATATATATCATATCAT
64 ACTTACATAATACATAAATATATATCATATAAT
* ** * * * **
7211810 AACTTACATACTTTACATAAATGTATATCATAACAAAACTTA-CATAACTTACA-AAGCTTACTT
1 AACTTACATACCTTACATAAATACATA-AAT-ACATAACATATCATAACTTACATAA-CTTACAA
*
7211873 AACTTACGTAATACATAAATATA
63 AACTTACATAATACATAAATATA
7211896 CACTTGAAAA
Statistics
Matches: 144, Mismatches: 28, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
94 8 0.06
95 78 0.54
96 13 0.09
97 37 0.26
98 8 0.06
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.33
Consensus pattern (96 bp):
AACTTACATACCTTACATAAATACATAAATACATAACATATCATAACTTACATAACTTACAAAAC
TTACATAATACATAAATATATATCATATAAT
Found at i:7211826 original size:43 final size:43
Alignment explanation
Indices: 7211721--7211829 Score: 159
Period size: 43 Copynumber: 2.5 Consensus size: 43
7211711 TAATAACTTA
* *
7211721 CATAACTTATATACCTTT-CAGAATACATAAATATATATCATAT
1 CATAACTTACATA-CTTTACATAATACATAAATATATATCATAT
*
7211764 CATAACTTACACAAC-TTACATAATACATAAATATATATCATAT
1 CATAACTTACA-TACTTTACATAATACATAAATATATATCATAT
7211807 CATAACTTACATACTTTACATAA
1 CATAACTTACATACTTTACATAA
7211830 ATGTATATCA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
42 4 0.07
43 54 0.92
44 1 0.02
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (43 bp):
CATAACTTACATACTTTACATAATACATAAATATATATCATAT
Found at i:7211826 original size:52 final size:50
Alignment explanation
Indices: 7211590--7211826 Score: 265
Period size: 52 Copynumber: 4.8 Consensus size: 50
7211580 AAATATATAT
* * * *
7211590 CATAAATATATATCATATAATAACTTACAAAACTTATATACCTTACAAAATA
1 CATAAATATATATCATATCATAACTTAC-ATACTT-TACACCTTACATAATA
* *
7211642 CATAAATATATAACATATCATAACTTACATAAC-TTACAAAACTTACATAATA
1 CATAAATATATATCATATCATAACTTACAT-ACTTTAC--ACCTTACATAATA
* * * *
7211694 CATAAATATATATCATATAATAACTTACATAACTTATATACCTTTCAGAATA
1 CATAAATATATATCATATCATAACTTACAT-ACTT-TACACCTTACATAATA
7211746 CATAAATATATATCATATCATAACTTAC--AC---A-A-CTTACATAATA
1 CATAAATATATATCATATCATAACTTACATACTTTACACCTTACATAATA
7211789 CATAAATATATATCATATCATAACTTACATACTTTACA
1 CATAAATATATATCATATCATAACTTACATACTTTACA
7211827 TAAATGTATA
Statistics
Matches: 159, Mismatches: 15, Indels: 25
0.80 0.08 0.13
Matches are distributed among these distances:
43 37 0.23
44 1 0.01
45 3 0.02
48 1 0.01
49 3 0.02
50 2 0.01
51 2 0.01
52 107 0.67
53 1 0.01
54 2 0.01
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (50 bp):
CATAAATATATATCATATCATAACTTACATACTTTACACCTTACATAATA
Found at i:7211862 original size:36 final size:36
Alignment explanation
Indices: 7211776--7211862 Score: 117
Period size: 36 Copynumber: 2.5 Consensus size: 36
7211766 TAACTTACAC
* *
7211776 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAA
*
7211810 AACTTACAT-ACTTTACATAAATGTATATCATAACAA
1 AACTTACATAAC-TTACATAAATATATATCATAACAA
7211846 AACTTACATAACTTACA
1 AACTTACATAACTTACA
7211863 AAGCTTACTT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
33 1 0.02
34 9 0.20
36 34 0.74
37 2 0.04
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAA
Found at i:7216490 original size:13 final size:13
Alignment explanation
Indices: 7216461--7216494 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7216451 GGAATATTTA
7216461 AAAAAAACACTTT
1 AAAAAAACACTTT
*
7216474 -AAAAAGCACTTT
1 AAAAAAACACTTT
7216486 AAAAAAACA
1 AAAAAAACA
7216495 ATATTTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.65, C:0.15, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAAAAACACTTT
Found at i:7217001 original size:13 final size:14
Alignment explanation
Indices: 7216985--7217013 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7216975 TTCTAGATAT
7216985 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
7216998 TTATAATTGTTTAA
1 TTATAATTGTTTAA
7217012 TT
1 TT
7217014 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:7217062 original size:28 final size:28
Alignment explanation
Indices: 7217031--7217087 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7217021 TCATTAGTAG
7217031 TTTTAAATAATGTTAAGTTATGTTGCAT
1 TTTTAAATAATGTTAAGTTATGTTGCAT
7217059 TTTTAAATAATGTTAAGTTATGTTGCAT
1 TTTTAAATAATGTTAAGTTATGTTGCAT
7217087 T
1 T
7217088 CCTTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.14, T:0.51
Consensus pattern (28 bp):
TTTTAAATAATGTTAAGTTATGTTGCAT
Found at i:7218012 original size:43 final size:43
Alignment explanation
Indices: 7217911--7218024 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
7217901 AAAATAATGG
* * *
7217911 CTTTTAGCGGCTCTTTTCTCACAAACGCCGCTAAAAGCCATGA
1 CTTTTAGCGGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
** * *
7217954 CTTTTAGTAGTGCTTTTTTAACAAACGCCGCTAAAAGCTATGA
1 CTTTTAGCGGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
* *
7217997 CTTTTAGCGGCGCTTTTTAAATAAACGC
1 CTTTTAGCGGCGCTTTTTTAACAAACGC
7218025 TACAAATTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (43 bp):
CTTTTAGCGGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
Found at i:7224763 original size:46 final size:46
Alignment explanation
Indices: 7224674--7224763 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
7224664 ATATCTAATA
* *
7224674 ATAAAAATTTCAAATATCAATAATACAGTAAATAATAATAATTTTC
1 ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
**
7224720 ATAAAAATTTAAAATATCCGTAATA-A-TAAATATAGTAAGAATTT
1 ATAAAAATTTAAAATATCAATAATACAGTAAATA-A-TAAGAATTT
7224764 CCTAGTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 2 0.05
46 30 0.79
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
Found at i:7228985 original size:8 final size:8
Alignment explanation
Indices: 7228960--7228992 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7228950 ATATAATAAA
7228960 ATTATTTT
1 ATTATTTT
*
7228968 ATTA-TGT
1 ATTATTTT
7228975 ATTATTTT
1 ATTATTTT
7228983 ATTATTTT
1 ATTATTTT
7228991 AT
1 AT
7228993 ATGGTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (8 bp):
ATTATTTT
Found at i:7228988 original size:23 final size:24
Alignment explanation
Indices: 7228960--7229017 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
7228950 ATATAATAAA
*
7228960 ATTATTTTATTAT-GTAT-TATTTT
1 ATTATTTTATTATGGTATATA-TAT
7228983 ATTATTTTA-TATGGTATATATAT
1 ATTATTTTATTATGGTATATATAT
7229006 ATTATTTATATT
1 ATTATTT-TATT
7229018 TTATTAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 3 0.10
23 22 0.73
24 4 0.13
25 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (24 bp):
ATTATTTTATTATGGTATATATAT
Found at i:7229403 original size:12 final size:12
Alignment explanation
Indices: 7229383--7229453 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 12
7229373 TTGTATGCTA
*
7229383 TATACATTTTAT
1 TATATATTTTAT
7229395 TATATA-TTT-T
1 TATATATTTTAT
7229405 TATAT-TATTTAT
1 TATATAT-TTTAT
7229417 TATATGATTTTTAT
1 TATAT-A-TTTTAT
* *
7229431 TATTTAATTTA-
1 TATATATTTTAT
7229442 TATTATATTTTA
1 TA-TATATTTTA
7229454 CCGTATTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.13
11 8 0.17
12 22 0.47
13 1 0.02
14 9 0.19
15 1 0.02
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (12 bp):
TATATATTTTAT
Found at i:7229431 original size:14 final size:13
Alignment explanation
Indices: 7229389--7229449 Score: 58
Period size: 14 Copynumber: 4.8 Consensus size: 13
7229379 GCTATATACA
7229389 TTTTATTATATAT
1 TTTTATTATATAT
7229402 TTTTA-TAT-TA-
1 TTTTATTATATAT
7229412 -TTTATTATATGAT
1 TTTTATTATAT-AT
*
7229425 TTTTATTATTTAAT
1 TTTTATTATAT-AT
*
7229439 TTATATTATAT
1 TTTTATTATAT
7229450 TTTACCGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 4 0.10
10 3 0.08
11 3 0.08
12 4 0.10
13 5 0.13
14 20 0.51
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
TTTTATTATATAT
Found at i:7229442 original size:23 final size:20
Alignment explanation
Indices: 7229390--7229445 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 20
7229380 CTATATACAT
7229390 TTTATTATATATTTTTATATTA
1 TTTATTATATA-TTTT-TATTA
7229412 TTTATTATATGATTTTTATTA
1 TTTATTATAT-ATTTTTATTA
7229433 TTTAATT-TATATT
1 TTT-ATTATATATT
7229446 ATATTTTACC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.09
21 11 0.34
22 17 0.53
23 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTATTATATATTTTTATTA
Found at i:7229725 original size:19 final size:19
Alignment explanation
Indices: 7229685--7229724 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
7229675 ATTTCATACA
7229685 TTTAAATTGCTTATTTATT
1 TTTAAATTGCTTATTTATT
7229704 TTTAAATT-CTCT-TTTATT
1 TTTAAATTGCT-TATTTATT
7229722 TTT
1 TTT
7229725 TGATATAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTAAATTGCTTATTTATT
Found at i:7230806 original size:31 final size:31
Alignment explanation
Indices: 7230768--7230830 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7230758 CTTTTAATGG
7230768 TTTTTATGGAGAAATCCCATCATGGTTTGGT
1 TTTTTATGGAGAAATCCCATCATGGTTTGGT
7230799 TTTTTATGGAGAAATCCCATCATGGTTTGGT
1 TTTTTATGGAGAAATCCCATCATGGTTTGGT
7230830 T
1 T
7230831 CTTTCCCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (31 bp):
TTTTTATGGAGAAATCCCATCATGGTTTGGT
Found at i:7231624 original size:26 final size:25
Alignment explanation
Indices: 7231578--7231626 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
7231568 AATATATTCA
* *
7231578 TTTTTTTTATTTTGGTATTTAATTT
1 TTTTTTTTAATTTAGTATTTAATTT
*
7231603 TTTTTTTCTAATTTAGTGTTTAAT
1 TTTTTTT-TAATTTAGTATTTAAT
7231627 GCACCAATCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.18, C:0.02, G:0.08, T:0.71
Consensus pattern (25 bp):
TTTTTTTTAATTTAGTATTTAATTT
Found at i:7231851 original size:15 final size:15
Alignment explanation
Indices: 7231833--7231862 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7231823 ATAATCATAT
7231833 AATTTATAAAAATAA
1 AATTTATAAAAATAA
7231848 AATTTATAAAAATAA
1 AATTTATAAAAATAA
7231863 GATAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTTATAAAAATAA
Found at i:7231996 original size:25 final size:23
Alignment explanation
Indices: 7231946--7231989 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7231936 AAATGTAATT
7231946 TTTTTTAAAAGAATTTAAAAATA
1 TTTTTTAAAAGAATTTAAAAATA
*
7231969 TTTTTTATAA-AATTCTAAAAA
1 TTTTTTAAAAGAATT-TAAAAA
7231990 GGTATTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTTTTAAAAGAATTTAAAAATA
Found at i:7232741 original size:19 final size:19
Alignment explanation
Indices: 7232651--7232749 Score: 76
Period size: 19 Copynumber: 5.0 Consensus size: 19
7232641 ATTTTTGTAA
7232651 ATTT-TATTTTATA-ATTT
1 ATTTCTATTTTATATATTT
* * *
7232668 TTTTATATTTTTATATGTTT
1 ATTTCTA-TTTTATATATTT
** *
7232688 ATTTTCTAGATTATATATAT
1 A-TTTCTATTTTATATATTT
7232708 ATTTCTGAATTTTTTATATATTT
1 ATTTCT--A--TTTTATATATTT
7232731 ATTTCTATTTTATATATTT
1 ATTTCTATTTTATATATTT
7232750 TTTAATGTGT
Statistics
Matches: 63, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
17 3 0.05
18 2 0.03
19 24 0.38
20 12 0.19
21 7 0.11
23 15 0.24
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTTCTATTTTATATATTT
Found at i:7233679 original size:43 final size:43
Alignment explanation
Indices: 7233586--7233746 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
7233576 GAGAAAAATG
* * * **
7233586 CCGCTAAAGATCATGACTTTTAGTGGCCCTTTTTTTGA-AAACA
1 CCGCTAAAGATCACGACTTTTAGCGGCGC-TTTTTCCACAAACA
* *
7233629 CCGCTAAAGATCACGACTTTTAGTGGCGCTTTTTCCACAAACT
1 CCGCTAAAGATCACGACTTTTAGCGGCGCTTTTTCCACAAACA
* * * *
7233672 CCACTAAAGATCACAACTTTTAGCGTCGCTTTATCCACAAACA
1 CCGCTAAAGATCACGACTTTTAGCGGCGCTTTTTCCACAAACA
* * * *
7233715 CTGCTAAATATCATGACCTTTAGCGGCGCTTT
1 CCGCTAAAGATCACGACTTTTAGCGGCGCTTT
7233747 CACTAGAAAC
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 6 0.06
43 93 0.94
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (43 bp):
CCGCTAAAGATCACGACTTTTAGCGGCGCTTTTTCCACAAACA
Found at i:7234213 original size:21 final size:21
Alignment explanation
Indices: 7234143--7234221 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 21
7234133 TTTGTTGCTG
* *
7234143 TCGCTGCTGCCTCTACCTCCC
1 TCGCTGTTGCCTCTGCCTCCC
*
7234164 TCGCTGTCG-CTGCTGCCTCCC
1 TCGCTGTTGCCT-CTGCCTCCC
7234185 TCGCTGTTGCCTCTGCCTCCC
1 TCGCTGTTGCCTCTGCCTCCC
*
7234206 TCGCTGTTGCATCTGC
1 TCGCTGTTGCCTCTGC
7234222 TACAAGTTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
20 2 0.04
21 47 0.92
22 2 0.04
ACGTcount: A:0.03, C:0.46, G:0.20, T:0.32
Consensus pattern (21 bp):
TCGCTGTTGCCTCTGCCTCCC
Found at i:7234659 original size:13 final size:14
Alignment explanation
Indices: 7234633--7234661 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7234623 ACTAATGACA
7234633 AATTAAACCATTAT
1 AATTAAACCATTAT
7234647 AATTAAA-CATTAT
1 AATTAAACCATTAT
7234660 AA
1 AA
7234662 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:7239676 original size:131 final size:129
Alignment explanation
Indices: 7239400--7239684 Score: 286
Period size: 131 Copynumber: 2.2 Consensus size: 129
7239390 GAAAAAGCGT
* *
7239400 AACCCAACACGATAGGGCACGATTCTCAAATCGCCAAACATCGAACATCCTTTGTTTTGAAAGAT
1 AACCCAACACGATAGGGCACGATTCTCAAATCGCCAAACATCAAACATCCTTCGTTTTGAAAGAT
* *
7239465 TTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATCAC
66 TTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAATCAC
* * * * * * *
7239529 AACCCAGCATGATAGGGCATGATTCTCGAATCGTCAAACGTCAAATATTACCTTCGTTTT-AAAG
1 AACCCAACACGATAGGGCACGATTCTCAAATCGCCAAACATCAAACA-T-CCTTCGTTTTGAAAG
* * *** ** * * * *
7239593 AATTTTTAGA-AGACATGCGTGAAATTTTGGAGGGATATTTGATTATTTTAAGCGAACGGGAAAT
64 -ATTTTTA-ATAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAAT
**
7239657 TGC
127 CAC
* *
7239660 AACCCAACACGTTAGGGCACAATTC
1 AACCCAACACGATAGGGCACGATTC
7239685 CACGAATTGC
Statistics
Matches: 123, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
129 39 0.32
130 5 0.04
131 78 0.63
132 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (129 bp):
AACCCAACACGATAGGGCACGATTCTCAAATCGCCAAACATCAAACATCCTTCGTTTTGAAAGAT
TTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAATCAC
Found at i:7242334 original size:23 final size:21
Alignment explanation
Indices: 7242294--7242350 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
7242284 TAATGGACTG
*
7242294 TGGTTTTTATTTATTTTATGTTT
1 TGGTTTTT-TTTAGTTTAT-TTT
*
7242317 ATGGTTTTTTTTGGTTTATTTT
1 -TGGTTTTTTTTAGTTTATTTT
7242339 TGGTTCTTTTTT
1 TGGTT-TTTTTT
7242351 TTTTGTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.17
22 9 0.30
23 8 0.27
24 8 0.27
ACGTcount: A:0.09, C:0.02, G:0.16, T:0.74
Consensus pattern (21 bp):
TGGTTTTTTTTAGTTTATTTT
Found at i:7242637 original size:44 final size:44
Alignment explanation
Indices: 7242574--7242975 Score: 447
Period size: 44 Copynumber: 9.1 Consensus size: 44
7242564 CGGGAACACC
* * * *
7242574 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * * *
7242618 AATCTGTCATATTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
** *
7242662 AATCTG-CTATCTTTTATCTGC-CTTCTGACAATATAGAGACGCCA
1 AATCTGTC-ATCTTCGATCTGCTC-TCTGACAATACAGAGACGCCA
* *
7242706 AATCTG-CTATCTTCAATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * **
7242750 AATCT-ACTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCA
1 AATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* *
7242794 AATCTGTTATCTTCGATCTGCACTCTGACAATACAGAGACGCCA
1 AATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * * *
7242838 AATCCG-CTATCTTTGATCTGCTCTCTGCCCATACAGAGACGCCA
1 AATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * *
7242882 AATCTGTTATCTTTGATCTGC-CTTCTGATAATACAGAGACGCCA
1 AATCTGTCATCTTCGATCTGCTC-TCTGACAATACAGAGACGCCA
* * *
7242926 AATTTGTTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
7242970 AATCTG
1 AATCTG
7242976 CTTGGATCTA
Statistics
Matches: 309, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.01
44 304 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (44 bp):
AATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
Found at i:7242725 original size:88 final size:87
Alignment explanation
Indices: 7242574--7242977 Score: 506
Period size: 88 Copynumber: 4.6 Consensus size: 87
7242564 CGGGAACACC
* * * *
7242574 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTG-TCATATTCGATCTG
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT-ATCTTCGATCTG
* * *
7242638 CTCTCTGTCAACACAGAGATGCCA
65 C-CTCTGACAATACAGAGACGCCA
** * * *
7242662 AATCTGCTATCTTTTATCTGC-CTTCTGACAATATAGAGACGCCAAATCTGCTATCTTCAATCTG
1 AATCTGCTATCTTCGATCTGCTC-TCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTG
7242726 CCCTCTGACAATACAGAGACGCCA
65 -CCTCTGACAATACAGAGACGCCA
* ** *
7242750 AATCTACTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
7242815 ACTCTGACAATACAGAGACGCCA
66 -CTCTGACAATACAGAGACGCCA
* * * * *
7242838 AATCCGCTATCTTTGATCTGCTCTCTGCCCATACAGAGACGCCAAATCTGTTATCTTTGATCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
*
7242903 CTTCTGATAATACAGAGACGCCA
66 C-TCTGACAATACAGAGACGCCA
* * * *
7242926 AATTTGTTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCT
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
7242978 TGGATCTACC
Statistics
Matches: 274, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
87 3 0.01
88 268 0.98
89 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (87 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
CTCTGACAATACAGAGACGCCA
Found at i:7242788 original size:132 final size:130
Alignment explanation
Indices: 7242574--7242977 Score: 508
Period size: 132 Copynumber: 3.1 Consensus size: 130
7242564 CGGGAACACC
* * * * *
7242574 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATATTCGATCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTCT-ATCTTCGATCTGC
* * ** *
7242639 TCTCTGTCAAC-ACAGAGATGCCAAATCTGCTATCTTTTATCTGCCTTCTGACAATATAGAGACG
65 TCTCTG-CAACTACAGAGACGCCAAATCTGTTATCTTCGATCTGCC-TCTGACAATACAGAGACG
7242703 CCA
128 CCA
* * *
7242706 AATCTGCTATCTTCAATCTGCCCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT-CTATCTTCGATCTGC
**
7242771 TCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCACTCTGACAATACAGAGACGC
65 TCTCTGCAACTACAGAGACGCCAAATCTGTTATCTTCGATCTGC-CTCTGACAATACAGAGACGC
7242836 CA
129 CA
* * * * *
7242838 AATCCGCTATCTTTGATCTGCTCTCTGCCCATACAGAGACGCCAAATCTGTTATCTTTGATCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT-CTATCTTCGATCTGC
* *
7242903 -CTTCTG-ATAATACAGAGACGCCAAATTTGTTATCTTCGATCTGCCCTCTGACAATACAGAGAC
65 TC-TCTGCA-ACTACAGAGACGCCAAATCTGTTATCTTCGATCTG-CCTCTGACAATACAGAGAC
7242966 GCCA
127 GCCA
7242970 AATCTGCT
1 AATCTGCT
7242978 TGGATCTACC
Statistics
Matches: 237, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
131 3 0.01
132 231 0.97
133 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (130 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTCTATCTTCGATCTGCT
CTCTGCAACTACAGAGACGCCAAATCTGTTATCTTCGATCTGCCTCTGACAATACAGAGACGCCA
Found at i:7245822 original size:39 final size:39
Alignment explanation
Indices: 7245768--7245946 Score: 277
Period size: 39 Copynumber: 4.6 Consensus size: 39
7245758 GAATGTTCGA
*
7245768 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
*
7245807 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
* *
7245846 ATGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
* * *
7245885 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
*
7245924 GTGATATCCGGGTTAAGTCCCGA
1 GTGATATCCGGGCTAAG-CCCGA
7245947 CGGCCTTTGT
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 126 0.96
40 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
Found at i:7247479 original size:26 final size:26
Alignment explanation
Indices: 7247450--7247502 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7247440 TCAAACATGC
7247450 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
7247476 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
7247502 A
1 A
7247503 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:7249018 original size:26 final size:26
Alignment explanation
Indices: 7248988--7249095 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
7248978 TGAAATGCCC
*
7248988 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7249014 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7249040 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
7249066 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7249092 ATCA
1 ATCA
7249096 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7249235 original size:26 final size:26
Alignment explanation
Indices: 7249205--7249323 Score: 202
Period size: 26 Copynumber: 4.6 Consensus size: 26
7249195 TCCTATTTTG
*
7249205 CCTAACCCATTATCATGGAATATTTA
1 CCTAACCCATTATCATGGAACATTTA
*
7249231 CCTAATCCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGGAACATTTA
*
7249257 CCTAACCCATTATCATGGAATATTTA
1 CCTAACCCATTATCATGGAACATTTA
*
7249283 CCTAATCCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGGAACATTTA
7249309 CCTAACCCATTATCA
1 CCTAACCCATTATCA
7249324 ATTTGTACCA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 86 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
CCTAACCCATTATCATGGAACATTTA
Found at i:7249267 original size:52 final size:52
Alignment explanation
Indices: 7249205--7249323 Score: 238
Period size: 52 Copynumber: 2.3 Consensus size: 52
7249195 TCCTATTTTG
7249205 CCTAACCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTA
7249257 CCTAACCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTA
7249309 CCTAACCCATTATCA
1 CCTAACCCATTATCA
7249324 ATTTGTACCA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (52 bp):
CCTAACCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTA
Found at i:7249385 original size:228 final size:228
Alignment explanation
Indices: 7248988--7249433 Score: 883
Period size: 228 Copynumber: 2.0 Consensus size: 228
7248978 TGAAATGCCC
7248988 ATCATGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT
1 ATCATGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT
7249053 TACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGAATTATGGAT
66 TACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGAATTATGGAT
7249118 ATCAAGTGCTCATATTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGGAGGTTTG
131 ATCAAGTGCTCATATTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGGAGGTTTG
7249183 TCATGCAAATCTTCCTATTTTGCCTAACCCATT
196 TCATGCAAATCTTCCTATTTTGCCTAACCCATT
*
7249216 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT
1 ATCATGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT
7249281 TACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGAATTATGGAT
66 TACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGAATTATGGAT
7249346 ATCAAGTGCTCATATTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGGAGGTTTG
131 ATCAAGTGCTCATATTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGGAGGTTTG
7249411 TCATGCAAATCTTCCTATTTTGC
196 TCATGCAAATCTTCCTATTTTGC
7249434 ACTCCTATTT
Statistics
Matches: 217, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
228 217 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (228 bp):
ATCATGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT
TACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGAATTATGGAT
ATCAAGTGCTCATATTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGGAGGTTTG
TCATGCAAATCTTCCTATTTTGCCTAACCCATT
Found at i:7256611 original size:41 final size:40
Alignment explanation
Indices: 7256536--7256744 Score: 265
Period size: 41 Copynumber: 5.1 Consensus size: 40
7256526 GCAAAAATTG
* * **
7256536 TAAAACACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTAGGAAAAACGCCGC
* *
7256577 TAAAAACAGAGCAATAGCGGCGCTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTAG-GAAAAACGCCGC
* * *
7256618 TAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTAGGAAAAACGCCGC
* *
7256658 TAAAAACCAGAGCATTAGCGGCCCTTTTGGAAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGAAAAACGCCGC
* *
7256699 TAAAAACCAGAACATTAGCGGCGCTTTTGGAAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGAAAAACGCCGC
7256740 TAAAA
1 TAAAA
7256745 GTCATATAAC
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 37 0.24
41 116 0.76
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTAGGAAAAACGCCGC
Found at i:7256916 original size:14 final size:14
Alignment explanation
Indices: 7256894--7256987 Score: 52
Period size: 14 Copynumber: 6.7 Consensus size: 14
7256884 TTAATTATCA
*
7256894 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
7256908 TTATGGTTTAAGATGGT
1 TTATGGTTT-A-A-GGT
* *
7256925 ATAGGGTTTAAGGT
1 TTATGGTTTAAGGT
7256939 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
7256950 CTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
7256964 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
7256978 TTAAGGTTTA
1 TTATGGTTTA
7256988 GGAGTTAATT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
10 1 0.02
11 8 0.13
14 37 0.61
15 3 0.05
16 2 0.03
17 10 0.16
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:7257054 original size:7 final size:7
Alignment explanation
Indices: 7257025--7257153 Score: 50
Period size: 7 Copynumber: 18.1 Consensus size: 7
7257015 GATGAATTAT
7257025 GGGTTTA
1 GGGTTTA
*
7257032 GGGATTA
1 GGGTTTA
* *
7257039 TGATTTA
1 GGGTTTA
7257046 GGGTTTA
1 GGGTTTA
*
7257053 GGGGTTA
1 GGGTTTA
7257060 GGG-TT-
1 GGGTTTA
7257065 GGAGTTTA
1 GG-GTTTA
* *
7257073 AGGTGTAA
1 GGGT-TTA
*
7257081 GGGATT-
1 GGGTTTA
*
7257087 GGTGTTAA
1 GG-GTTTA
*
7257095 GGGTTAA
1 GGGTTTA
7257102 GGGTTTA
1 GGGTTTA
*
7257109 GTGTTTA
1 GGGTTTA
**
7257116 GTATTTA
1 GGGTTTA
*
7257123 TGGG-ATA
1 -GGGTTTA
*
7257130 GGGGTTAA
1 -GGGTTTA
7257138 GAGGTTTA
1 G-GGTTTA
7257146 GGGTTTA
1 GGGTTTA
7257153 G
1 G
7257154 ATTAATTAGT
Statistics
Matches: 89, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 67 0.75
8 15 0.17
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:7257785 original size:3 final size:3
Alignment explanation
Indices: 7257777--7257823 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7257767 CATTTTAGTA
7257777 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7257824 AAGAGAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7262490 original size:14 final size:14
Alignment explanation
Indices: 7262471--7262500 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7262461 TATTATTTAA
7262471 TTAAAATATATATT
1 TTAAAATATATATT
*
7262485 TTAAAATTTATATT
1 TTAAAATATATATT
7262499 TT
1 TT
7262501 TTAGCGACGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAAAATATATATT
Found at i:7262618 original size:43 final size:43
Alignment explanation
Indices: 7262561--7262684 Score: 221
Period size: 43 Copynumber: 2.9 Consensus size: 43
7262551 ATTTGCGAAA
*
7262561 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTGGGAG
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTGGGAG
* *
7262604 AAGTGCCGCTAAAGGCCATGGTCTTTAGCGGCGTTTTTGGGAG
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTGGGAG
7262647 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTT
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTT
7262685 TTAAATAAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.30
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTGGGAG
Found at i:7264445 original size:10 final size:10
Alignment explanation
Indices: 7264430--7264465 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7264420 TACGTTTATG
7264430 GTTTTTTTTA
1 GTTTTTTTTA
7264440 GTTTTTTTTA
1 GTTTTTTTTA
* *
7264450 ATTTTTTTTT
1 GTTTTTTTTA
7264460 GTTTTT
1 GTTTTT
7264466 ATATGGGTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.83
Consensus pattern (10 bp):
GTTTTTTTTA
Found at i:7270954 original size:13 final size:13
Alignment explanation
Indices: 7270936--7270960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7270926 TAGAAGTAAT
7270936 AAGAAATATATAA
1 AAGAAATATATAA
7270949 AAGAAATATATA
1 AAGAAATATATA
7270961 CATACATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAGAAATATATAA
Found at i:7271301 original size:3 final size:3
Alignment explanation
Indices: 7271288--7271370 Score: 50
Period size: 3 Copynumber: 27.3 Consensus size: 3
7271278 GAGGGCATAT
7271288 ATA AT- ATA ATA AT- ATAA ATA ATA ATA CATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* * *
7271332 ATA ATA AT- ATAA ATG ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7271371 AACAAAGCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
2 9 0.14
3 43 0.67
4 10 0.16
5 2 0.03
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7271736 original size:20 final size:21
Alignment explanation
Indices: 7271706--7271755 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
7271696 TTCTTTCCAA
*
7271706 AAAAACAAAAAAAACACCTCC
1 AAAAACAAAAAAACCACCTCC
*
7271727 AAAAACAAAAAAACCTCCTCC
1 AAAAACAAAAAAACCACCTCC
7271748 -AAAACAAA
1 AAAAACAAA
7271756 GAACAATCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.66, C:0.28, G:0.00, T:0.06
Consensus pattern (21 bp):
AAAAACAAAAAAACCACCTCC
Found at i:7271774 original size:23 final size:20
Alignment explanation
Indices: 7271707--7271774 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
7271697 TCTTTCCAAA
* *
7271707 AAAACAAAAAAAACACCTCC
1 AAAACAAAAAAACCTCCTCC
7271727 AAAAACAAAAAAACCTCCTCC
1 -AAAACAAAAAAACCTCCTCC
*
7271748 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAA-AA-AA-CCTCCTCC
7271771 AAAA
1 AAAA
7271775 AACCAAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
20 8 0.20
21 20 0.49
22 2 0.05
23 11 0.27
ACGTcount: A:0.59, C:0.29, G:0.01, T:0.10
Consensus pattern (20 bp):
AAAACAAAAAAACCTCCTCC
Found at i:7271942 original size:4 final size:4
Alignment explanation
Indices: 7271933--7271970 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
7271923 GGCCAAGGTT
7271933 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
7271971 GTGTTTGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7272521 original size:176 final size:176
Alignment explanation
Indices: 7272244--7273079 Score: 739
Period size: 176 Copynumber: 4.7 Consensus size: 176
7272234 GGAAGGCGAT
* * * * * * * * * * *
7272244 ATCTGCTATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATTTGCTATCTTCGA-TCCG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT-TG
*
7272308 TTCCCTATAAGCACAAGGATGCCAAATCT-ACTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
64 TTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
7272372 GTCATACTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATATCAG
128 GTCATACTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAA
* *
7272421 ATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
*
7272486 CCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC
66 CCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTC
* * * *
7272551 ATGCTGAAATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAA
131 ATACTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAA
*
7272597 ATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
** * * * * *
7272662 CCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAAT
66 CCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTTG-TTCCCTATAAGCACAGGGAT
* * ** ** * * *
7272724 ATCAGATCTGCTATCTTCGAT-TTGTTCCCTATAAGCACAGGGATGTCAA
128 GTCATA-CTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAA
* * * *
7272773 ATCTGCTGTTTTC-AACTTGTTCCCCATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGT
** * * * * * *
7272837 TCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCGTCACTGTAAGCACAGGAA
65 TCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTTG-TTCCCTATAAGCACAGGGA
* ** * * * * *
7272899 TGTCAAATCTGCTATCTTCGATTTA-TTCCCTATAAGCACAGGGATGCCAA
127 TGTCATA-CTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAA
* * * * ** * *
7272949 ATCTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTT
* * * * * * * * * *
7273010 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGA
63 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
7273075 TGTCA
127 TGTCA
7273080 AATCTGCTGT
Statistics
Matches: 571, Mismatches: 74, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
174 4 0.01
175 15 0.03
176 512 0.90
177 38 0.07
178 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (176 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
CCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTC
ATACTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAA
Found at i:7272539 original size:132 final size:131
Alignment explanation
Indices: 7272268--7273123 Score: 613
Period size: 132 Copynumber: 6.5 Consensus size: 131
7272258 ATCTGCTTCA
* * * * *
7272268 CTATAAGCACAGGAATGTCAGATTTGCTATCTTCGATCCGTTCCCTATAAGCACAAGGATGCCAA
1 CTATAAGCACAGGGATG-CACATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAA
* * * * * ** * * **
7272333 ATCTACTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATA-CTGAAATCTTCGATCTACT
65 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGT
*
7272397 TCA
129 TCC
* * * * *
7272400 CTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAA
1 CTATAAGCACAGGGAT-GCACATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAA
* * *
7272465 ATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
65 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
7272530 CC
130 CC
* * * * * *
7272532 CTATAAGCACAGGGATGC-CATGCTGAAATCTTTGATCTGCG-TCACTGTAAGCACAGGAATGTC
1 CTATAAGCACAGGGATGCACAT-CTGATATCTTCGATC--CGTTCCCTATAAGCACAGGGATGCC
* *
7272595 AAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
63 AAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
7272660 TTCC
128 TTCC
* * * * * * **
7272664 CTATAAGCACAGGGATGC-CATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCA
1 CTATAAGCACAGGGATGCACAT-CTGATATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCA
* * * * *
7272728 GATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGT
64 AATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGT
7272793 TCC
129 TCC
* * * * * *
7272796 CCATAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC-
1 CTATAAGCACAGGGATG-CACATCTGATATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCA
** ** * * * * * * * * * *
7272859 -ATGCTGAAATCTTTGA-TCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATT
64 AAT-CTGCTATCTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
*
7272922 TATTCC
126 TGTTCC
* * * * *
7272928 CTATAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC-
1 CTATAAGCACAGGGATG-CACATCTGATATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCA
** ** * * * * * * * * * *
7272991 -ATGCTGAAATCTTTGA-TCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
64 AAT-CTGCTATCTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
7273054 TGTTCC
126 TGTTCC
* * * * * *
7273060 CTATAAGCACAGGGATGTCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCA
1 CTATAAGCACAGGGATG-CACATCTGATATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCA
7273124 TGCTGAAATC
Statistics
Matches: 644, Mismatches: 66, Indels: 27
0.87 0.09 0.04
Matches are distributed among these distances:
130 6 0.01
131 25 0.04
132 591 0.92
133 20 0.03
134 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (131 bp):
CTATAAGCACAGGGATGCACATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAA
TCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTC
C
Found at i:7272809 original size:308 final size:308
Alignment explanation
Indices: 7272251--7273123 Score: 1568
Period size: 308 Copynumber: 2.8 Consensus size: 308
7272241 GATATCTGCT
* * * * **
7272251 ATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATTTGCTATCTTCGATCCGTTCCCTAT
1 ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
* * *
7272316 AAGCACAAGGATGCCAAATCT-ACTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATACT
66 AAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
* * **
7272380 GAAATCTTCGATCTACTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATCCGTTCCC
130 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATTTGTTCCC
* *
7272445 TATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAA
195 TATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAA
7272510 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
260 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
7272559 ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
7272624 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
7272689 AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATTTGTTCCCT
131 AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATTTGTTCCCT
*
7272754 ATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCCATAAGCACAGGGATGCCAAAT
196 ATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT
7272819 CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
261 CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
*
7272867 ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTATTCCCTAT
1 ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
7272932 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
*
7272997 AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCT
131 AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATTTGTTCCCT
7273062 ATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
196 ATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
7273124 TGCTGAAATC
Statistics
Matches: 545, Mismatches: 19, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
308 544 1.00
309 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (308 bp):
ATCTTTGATCTGCGTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGATTTGTTCCCT
ATAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT
CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:7273124 original size:132 final size:132
Alignment explanation
Indices: 7272755--7273182 Score: 739
Period size: 132 Copynumber: 3.2 Consensus size: 132
7272745 TTGTTCCCTA
* * * * * *
7272755 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCCATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATC
*
7272820 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCGTCAC
66 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCAC
7272885 TG
131 TG
*
7272887 TAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTATTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATC
7272952 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCAC
66 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCAC
7273017 TG
131 TG
* *
7273019 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGTCAAATC
1 TAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATC
* *
7273084 TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCAC
66 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCAC
7273149 TG
131 TG
*
7273151 TAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 TAAGCACAGGAATGTCAAATCTGCTATCTTCG
7273183 GTCTGCTCCT
Statistics
Matches: 283, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 283 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (132 bp):
TAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATC
TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCAC
TG
Found at i:7273319 original size:68 final size:68
Alignment explanation
Indices: 7273235--7273433 Score: 285
Period size: 68 Copynumber: 2.9 Consensus size: 68
7273225 TCTTCTTCTA
* * * *
7273235 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
7273300 -TT
66 CCT
* *
7273302 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
7273367 TCCT
65 TCCT
* * *
7273371 CTAAAATTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
7273434 AATTTGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
67 6 0.05
68 111 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:7273709 original size:44 final size:44
Alignment explanation
Indices: 7273451--7274008 Score: 314
Period size: 44 Copynumber: 12.6 Consensus size: 44
7273441 AATTTCCAGC
* ** ** *
7273451 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATCTTCGAT
* * * * *
7273495 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAAC
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTGTAAATCTTCGAT
* * *
7273538 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCGA-T
* *
7273583 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAA--TTCGA-
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATCTTCGAT
* ** * *
7273625 CTTGTTACCCTACTGCTTAGAGGGTTAA-AGC-CCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAG-GGGTTAAGATCTGTA-AATCTTCGAT
** *
7273670 CTGTTTTCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCGA-T
* * *
7273714 CTGTTACCCTACTGCTTAGGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATC-TGTAAATCTTCGAT
* * * *
7273757 -TGTTACCCTACTGCTTAGGGGCTTAGGGGT-TAAAGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTA-AGATCT---G--TA-AATCTTCGAT
* * *
7273807 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCAAT
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCGAT
* * * * *
7273850 CTGTTTCTCTACTGCTTAGGGAGATAAGATCTG-CAA--TTCGGT
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATCTTCGAT
* * * **
7273892 CTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAATCTTCGAT
* *
7273936 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCGA-T
*
7273981 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGG-TTAAG
7274009 GCTTGTGAAT
Statistics
Matches: 396, Mismatches: 73, Indels: 89
0.71 0.13 0.16
Matches are distributed among these distances:
41 2 0.01
42 53 0.13
43 113 0.29
44 122 0.31
45 72 0.18
46 1 0.00
48 1 0.00
49 2 0.01
50 6 0.02
51 20 0.05
52 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCGAT
Found at i:7273843 original size:43 final size:43
Alignment explanation
Indices: 7273796--7274008 Score: 214
Period size: 43 Copynumber: 4.9 Consensus size: 43
7273786 TTAAAGCCCA
7273796 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* * * *
7273839 TCATCTTCAATCTGTTTCTCTACTGCTTAGGGAGATAAGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* * * * * * * *
7273882 GCA-ATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCT
*
7273925 TCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* * * * *
7273968 GTAAATCTTC-AGCCTGTTACCCTATTGCTTAGGGGCTTAAG
1 -T-CATCTTCGA-TCTGTTTCCCTACTGCTTAGGGGGTTAAG
7274009 GCTTGTGAAT
Statistics
Matches: 134, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
42 26 0.19
43 46 0.34
44 32 0.24
45 30 0.22
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (43 bp):
TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
Found at i:7274187 original size:66 final size:66
Alignment explanation
Indices: 7274072--7274198 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
7274062 TCTATGCTTA
* *
7274072 TGTCGAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
7274137 G
66 G
*
7274138 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
7274199 TATATGAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:7275397 original size:6 final size:6
Alignment explanation
Indices: 7275388--7275435 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
7275378 TTTTTTTTTT
*
7275388 TTTGCC TTTGCC TTTGCC TTTTCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
7275436 ATATAACGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.00, C:0.33, G:0.15, T:0.52
Consensus pattern (6 bp):
TTTGCC
Done.