Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 290 of 378
Found at i:87669924 original size:27 final size:27
Alignment explanation
Indices: 87669872--87669925 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
87669862 AAACTTGTAC
* * *
87669872 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
87669899 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
87669926 GCTTTTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:87671142 original size:28 final size:28
Alignment explanation
Indices: 87671111--87671165 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
87671101 CAATCAACAG
87671111 TAAGTATTTTTCCCAACTGCCCTCAAAC
1 TAAGTATTTTTCCCAACTGCCCTCAAAC
87671139 TAAGTATTTTTCCCAACTGCCCTCAAA
1 TAAGTATTTTTCCCAACTGCCCTCAAA
87671166 ATCTAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (28 bp):
TAAGTATTTTTCCCAACTGCCCTCAAAC
Found at i:87672597 original size:44 final size:42
Alignment explanation
Indices: 87672544--87672645 Score: 111
Period size: 41 Copynumber: 2.4 Consensus size: 42
87672534 ACCACCTTTA
* * *
87672544 GGACGTTGGCATCGATTTGA-GATTTACGTGTAAGA-CCATGTCTT
1 GGACATTGGCATCGATAT-ATGATTTA-GTGTAAGATCC-TGTC-G
87672588 GGACATTGGCATCGA-ATATGATTTAGTGTAAGATCCTGTCG
1 GGACATTGGCATCGATATATGATTTAGTGTAAGATCCTGTCG
*
87672629 GGACAGTGGCATCGATA
1 GGACATTGGCATCGATA
87672646 GTTGATTACA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
41 14 0.27
42 14 0.27
43 9 0.18
44 14 0.27
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
GGACATTGGCATCGATATATGATTTAGTGTAAGATCCTGTCG
Found at i:87672652 original size:42 final size:43
Alignment explanation
Indices: 87672564--87672676 Score: 112
Period size: 42 Copynumber: 2.7 Consensus size: 43
87672554 ATCGATTTGA
* *
87672564 GATTTACGTGTAAGACCATGTCTTGGACATTGGCATCGAATAT
1 GATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGAATAT
87672607 GATTTA-GTGTAAGATCC-TGTC-GGGACAGTGGCATCG-ATAGTT
1 GATTTACGTGTAAGA-CCATGTCTGGGACAGTGGCATCGAATA--T
* *
87672649 GA-TTACATGTAAGATC-TCGTCTGGGACA
1 GATTTACGTGTAAGACCAT-GTCTGGGACA
87672677 TAGGCACTGT
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
40 3 0.05
41 18 0.30
42 25 0.42
43 14 0.23
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGAATAT
Found at i:87674715 original size:46 final size:45
Alignment explanation
Indices: 87674564--87674732 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
87674554 AACCCGCCCC
* *
87674564 TAAGTGAACTCGACTCAACTCAACGAGCT-GG-CGTTCGCATCCA
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
87674607 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
87674655 TCA-CGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
87674699 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGA
87674733 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 10, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 12 0.12
44 19 0.18
45 8 0.08
46 44 0.43
47 6 0.06
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:87674724 original size:92 final size:90
Alignment explanation
Indices: 87674569--87674735 Score: 289
Period size: 92 Copynumber: 1.8 Consensus size: 90
87674559 GCCCCTAAGT
*
87674569 GAACTCGACTCAACTCAACGAGCTGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
1 GAACTCGACTCAACTCAACGAGCTGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
87674634 GTTCGGATGCCTAGTTACATTTCAC
66 GTTCGGATGCCTAGTTACATTTCAC
* *
87674659 GAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCT-GG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
87674724 GAGTTCGGATGC
64 GAGTTCGGATGC
87674736 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 23 0.32
91 2 0.03
92 47 0.65
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATTTCAC
Found at i:87675182 original size:30 final size:30
Alignment explanation
Indices: 87675148--87675207 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87675138 ATTTAATACG
87675148 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
87675178 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
87675208 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:87682244 original size:46 final size:46
Alignment explanation
Indices: 87682097--87682267 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
87682087 AACCCGCCCC
* *
87682097 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
87682142 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
87682189 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
87682234 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87682268 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 21
0.77 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 21 0.20
45 13 0.12
46 35 0.33
47 24 0.23
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:87694618 original size:40 final size:40
Alignment explanation
Indices: 87694574--87694663 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
87694564 TATGCATGTG
* *
87694574 ATTGAATGTTTTTAATTTAAATGAAATTTTATGGCCCGAT
1 ATTGAATGTTTTTAATTGAAATGAAATTTTATAGCCCGAT
*
87694614 ATTGAATGTTTTTAATTGAAATGAAATTTTCTAGCCCGAT
1 ATTGAATGTTTTTAATTGAAATGAAATTTTATAGCCCGAT
* *
87694654 TTTGCATGTT
1 ATTGAATGTT
87694664 GTGAATGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.46
Consensus pattern (40 bp):
ATTGAATGTTTTTAATTGAAATGAAATTTTATAGCCCGAT
Found at i:87698009 original size:43 final size:42
Alignment explanation
Indices: 87697910--87698002 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
87697900 AGATTTAAGT
* * * *
87697910 GTAAAACCATGTCTGGGACATTGGCATCGAATATGATTTCGA
1 GTAAGACCCTGTCTGGGACAGTGGCATCGAATATGATTACGA
87697952 GTAAGACCCTGTCTGGGACAGTGGCATCG-ATAGTTGATTAC-A
1 GTAAGACCCTGTCTGGGACAGTGGCATCGAATA--TGATTACGA
87697994 TGTAAGACC
1 -GTAAGACC
87698003 TCGTCTGAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
41 3 0.07
42 27 0.61
43 14 0.32
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (42 bp):
GTAAGACCCTGTCTGGGACAGTGGCATCGAATATGATTACGA
Found at i:87703155 original size:40 final size:39
Alignment explanation
Indices: 87702990--87703173 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
87702980 AAATTGAATG
* * *
87702990 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
87703030 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
87703070 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
87703110 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
87703149 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
87703174 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:87703198 original size:80 final size:81
Alignment explanation
Indices: 87703030--87703218 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
87703020 GCTGGAAATT
* * * *
87703030 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
87703095 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
87703111 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
87703174 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
87703190 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
87703219 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:87711270 original size:40 final size:39
Alignment explanation
Indices: 87711105--87711288 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
87711095 AAATTGAATG
* * *
87711105 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
87711145 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
87711185 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
87711225 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
87711264 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
87711289 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:87711313 original size:80 final size:81
Alignment explanation
Indices: 87711145--87711333 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
87711135 GCTGGAAATT
* * * *
87711145 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
87711210 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
87711226 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
87711289 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
87711305 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
87711334 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:87712754 original size:41 final size:41
Alignment explanation
Indices: 87712697--87712776 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
87712687 ACCCCTCGTG
87712697 TCCGACACCGGCGATGGTCTCGGGTTCGGGGTGTTACAGTA
1 TCCGACACCGGCGATGGTCTCGGGTTCGGGGTGTTACAGTA
87712738 TCCGACACCGGCGATGGTCTCGGGTTCGGGGTGTTACAG
1 TCCGACACCGGCGATGGTCTCGGGTTCGGGGTGTTACAG
87712777 CTTGCCCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.14, C:0.25, G:0.38, T:0.24
Consensus pattern (41 bp):
TCCGACACCGGCGATGGTCTCGGGTTCGGGGTGTTACAGTA
Found at i:87717403 original size:27 final size:27
Alignment explanation
Indices: 87717369--87717568 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
87717359 TGGATAAGTT
* *
87717369 GTAGAATTACCGAAATACTCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
87717396 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
87717423 GTAAAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
87717450 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
87717477 ATAGAATTACCGAAATACCCTTGTACG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
87717504 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
87717531 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
87717558 GTAAAATTACC
1 GTAGAATTACC
87717569 ATTTTGCCCC
Statistics
Matches: 151, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:87718199 original size:2 final size:2
Alignment explanation
Indices: 87718194--87718233 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
87718184 TTCGCCACAC
87718194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87718234 CTGTTCTGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87725038 original size:80 final size:81
Alignment explanation
Indices: 87724887--87725068 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 81
87724877 GGATAAGTTA
* * ** **
87724887 TAGAATTAGCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAATTATTG
1 TAGAATTACCGAAATACCCTTGTAAGATAGAATTACCGAAATACCCCTATAGGACAAAATTATCA
87724952 AAATACCCCTATAGGG
66 AAATACCCCTATAGGG
* * *
87724968 TAGAATTACCGAAATACCCTTGT-AGA-ATGAATTATCGAAATACCCTTGTAGGACAGAAA-TAT
1 TAGAATTACCGAAATACCCTTGTAAGATA-GAATTACCGAAATACCCCTATAGGACA-AAATTAT
* *
87725030 CAAAATACCTCTGTAGGG
64 CAAAATACCCCTATAGGG
*
87725048 TAGAATTACCGAGATACCCTT
1 TAGAATTACCGAAATACCCTT
87725069 ATGGGGTAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 61 0.70
81 25 0.29
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCTTGTAAGATAGAATTACCGAAATACCCCTATAGGACAAAATTATCA
AAATACCCCTATAGGG
Found at i:87725075 original size:27 final size:27
Alignment explanation
Indices: 87724887--87725084 Score: 175
Period size: 27 Copynumber: 7.4 Consensus size: 27
87724877 GGATAAGTTA
* * *
87724887 TAGAATTAGCGAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCTTATAGGG
*
87724914 TAGAATTACCGAAATACCCCTATAGGG
1 TAGAATTACCGAAATACCCTTATAGGG
* ** *
87724941 TAAAATTATTGAAATACCCCTATAGGG
1 TAGAATTACCGAAATACCCTTATAGGG
* **
87724968 TAGAATTACCGAAATACCCTTGTAGAA
1 TAGAATTACCGAAATACCCTTATAGGG
* * *
87724995 T-GAATTATCGAAATACCCTTGTAGGA
1 TAGAATTACCGAAATACCCTTATAGGG
* * * * *
87725021 CAGAAATATCAAAATA-CCTCTGTAGGG
1 TAGAATTACCGAAATACCCT-TATAGGG
* *
87725048 TAGAATTACCGAGATACCCTTATGGGG
1 TAGAATTACCGAAATACCCTTATAGGG
*
87725075 TAAAATTACC
1 TAGAATTACC
87725085 ATTTTTTCCC
Statistics
Matches: 140, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
26 26 0.19
27 111 0.79
28 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCTTATAGGG
Found at i:87725076 original size:107 final size:107
Alignment explanation
Indices: 87724889--87725084 Score: 250
Period size: 107 Copynumber: 1.8 Consensus size: 107
87724879 ATAAGTTATA
* * * **
87724889 GAATTAGCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAATTATTGAA
1 GAATTAGCGAAATACCCTTGTAAGGCAGAAATACCAAAATACCCCTATAGGGTAAAATTACCGAA
*
87724954 ATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGAAT
66 ATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGAAT
* * * * *
87724996 GAATTATCGAAATACCCTTGT-AGGACAGAAATATCAAAATACCTCTGTAGGGTAGAATTACCGA
1 GAATTAGCGAAATACCCTTGTAAGG-CAGAAATACCAAAATACCCCTATAGGGTAAAATTACCGA
* * *
87725060 GATACCCTTATGGGGTAAAATTACC
65 AATACCCCTATAGGGTAAAATTACC
87725085 ATTTTTTCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
106 3 0.04
107 71 0.96
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (107 bp):
GAATTAGCGAAATACCCTTGTAAGGCAGAAATACCAAAATACCCCTATAGGGTAAAATTACCGAA
ATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGAAT
Found at i:87725750 original size:2 final size:2
Alignment explanation
Indices: 87725743--87725776 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
87725733 CCACAATTAC
*
87725743 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87725777 CTGTTCTGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:87728641 original size:17 final size:18
Alignment explanation
Indices: 87728612--87728646 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
87728602 GTTTAACTCG
*
87728612 GTTTTTGATGATTTTTGC
1 GTTTTTGATGATTGTTGC
87728630 GTTTTTGA-GATTGTTGC
1 GTTTTTGATGATTGTTGC
87728647 TTTGAGTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.06, G:0.26, T:0.57
Consensus pattern (18 bp):
GTTTTTGATGATTGTTGC
Found at i:87732597 original size:29 final size:29
Alignment explanation
Indices: 87732498--87732627 Score: 122
Period size: 29 Copynumber: 4.6 Consensus size: 29
87732488 TACTCGATTT
** * *
87732498 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
87732527 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
87732556 CGCACAC--AGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
87732583 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
87732612 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
87732628 ATCTCGTCAC
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
27 20 0.24
28 2 0.02
29 60 0.73
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:87739673 original size:68 final size:70
Alignment explanation
Indices: 87739601--87739798 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
87739591 ACACCCTGTA
* * * *
87739601 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
87739663 ATAAAT
65 ATAAAT
*
87739669 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
87739734 ATAAAT
65 ATAAAT
*
87739740 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
87739799 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:87739712 original size:41 final size:41
Alignment explanation
Indices: 87739667--87739784 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
87739657 TGAAAGATAA
87739667 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
87739708 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
87739738 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
87739779 ATGTAG
1 ATGTAG
87739785 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:87739724 original size:71 final size:71
Alignment explanation
Indices: 87739635--87739798 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
87739625 GAGATGTATC
87739635 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
87739700 AGGACA
66 AGGACA
87739706 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
87739771 AGGACA
66 AGGACA
87739777 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
87739799 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:87747241 original size:68 final size:70
Alignment explanation
Indices: 87747169--87747366 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
87747159 ACACCCTGTA
* * * *
87747169 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
87747231 ATAAAT
65 ATAAAT
*
87747237 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
87747302 ATAAAT
65 ATAAAT
*
87747308 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
87747367 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:87747280 original size:41 final size:41
Alignment explanation
Indices: 87747235--87747352 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
87747225 TGAAAGATAA
87747235 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
87747276 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
87747306 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
87747347 ATGTAG
1 ATGTAG
87747353 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:87747292 original size:71 final size:71
Alignment explanation
Indices: 87747203--87747366 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
87747193 GAGATGTATC
87747203 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
87747268 AGGACA
66 AGGACA
87747274 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
87747339 AGGACA
66 AGGACA
87747345 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
87747367 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:87750939 original size:14 final size:14
Alignment explanation
Indices: 87750920--87750950 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
87750910 TCTTGTGAAC
*
87750920 AATGTGCTTATGTG
1 AATGTGCATATGTG
87750934 AATGTGCATATGTG
1 AATGTGCATATGTG
87750948 AAT
1 AAT
87750951 TAAGATGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (14 bp):
AATGTGCATATGTG
Found at i:87755838 original size:30 final size:30
Alignment explanation
Indices: 87755804--87755864 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
87755794 TTCCCGAGCC
87755804 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
87755834 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
87755864 T
1 T
87755865 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:87759404 original size:20 final size:20
Alignment explanation
Indices: 87759360--87759403 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
87759350 AATACTTACG
* *
87759360 ATTTTAATTATTGGACTGAT
1 ATTTTAATTATTGCACTCAT
87759380 ATTTTAATTATTGCAC-CAT
1 ATTTTAATTATTGCACTCAT
87759399 ATTTT
1 ATTTT
87759404 TTTATATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (20 bp):
ATTTTAATTATTGCACTCAT
Found at i:87764683 original size:50 final size:50
Alignment explanation
Indices: 87764610--87765009 Score: 344
Period size: 50 Copynumber: 8.0 Consensus size: 50
87764600 TAACATGGTT
** *
87764610 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * ** * *
87764660 TTAGGTCGCATGTGTTGTACTAAGTGCAGGCTACTATGAATA-CATGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GA-TAG
* * * *
87764711 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
** * * *
87764761 TTAGGTCATGTGTGAAGTACTATGTGCAGGCTACTACATGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
87764811 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCA-ACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGA-TAG
* * * *
87764862 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * *
87764912 TTAGGTCACGTGTGTAGGACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
** * * * * * *
87764962 TT-GGTTGCATGTGTATTACAAACTTCAGGCTACTATGCG-ACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
87765010 CTTCGGTTAA
Statistics
Matches: 277, Mismatches: 63, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
48 8 0.03
49 31 0.11
50 159 0.57
51 75 0.27
52 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:87764848 original size:151 final size:151
Alignment explanation
Indices: 87764572--87764976 Score: 605
Period size: 151 Copynumber: 2.7 Consensus size: 151
87764562 AACACATGTA
* * * * * *
87764572 TAGTACTATGTGCAGGATACTATGTGTTTAACATGGTTTTAGGTCATGTGTGTAGTACTAAGTGC
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCATGTGTGTAGTACTAAGTGC
* *
87764637 AGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTTGTACTAAGTGCAGGCTACTATGAATA
64 AGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGAATA
**
87764702 CATGACAACTTCAATCACGTGTG
129 CACAACAACTTCAATCACGTGTG
* *
87764725 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGAAGTACTATGTGCAG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGTGCAG
** *
87764790 GCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACC
66 GCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGAATACA
87764855 CAACAACTTCAATCACGTGTG
131 CAACAACTTCAATCACGTGTG
* *
87764876 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGGACTAAGTGCAG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGTGCAG
* * *
87764941 GCTACTACGTGTACCAGATTGTT-GGTTGCATGTGTA
66 GCTACTACATGTACCAGATAGTTAGGTCGCATGTGTA
87764977 TTACAAACTT
Statistics
Matches: 230, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
150 12 0.05
151 188 0.82
153 30 0.13
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGTGCAG
GCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGAATACA
CAACAACTTCAATCACGTGTG
Found at i:87764901 original size:28 final size:27
Alignment explanation
Indices: 87764869--87764952 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
87764859 AACTTCAATC
87764869 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAG-ACTAAGTGCAGGCTACT
* * *
87764897 ACGTGTATCAGA-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGACTAAGTGCAGGCTACT
87764919 ACGTGTGTAGGACTAAGTGCAGGCTACT
1 ACGTGTGTA-GACTAAGTGCAGGCTACT
87764947 ACGTGT
1 ACGTGT
87764953 ACCAGATTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 1 0.02
22 9 0.21
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (27 bp):
ACGTGTGTAGACTAAGTGCAGGCTACT
Found at i:87764955 original size:101 final size:101
Alignment explanation
Indices: 87764610--87764955 Score: 312
Period size: 101 Copynumber: 3.4 Consensus size: 101
87764600 TAACATGGTT
* * * * * * *
87764610 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATAGTTAGGTCGCATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAGAAACTTAGATCACGTGTG
** * *
87764674 TTGTACTAAGTGCAGGCTACT--ATGAATA-CATGACAAC
66 AAGTACTAAGTGCAGGCTACTACATG--TACCA-GA-TAG
* * *** * *
87764711 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCATGTGT
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAGAAACTTAGATCACGTGT
*
87764774 GAAGTACTATGTGCAGGCTACTACATGTACCAGATAG
65 GAAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* * * * *
87764811 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCA-ACAACTTCA-ATCACGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAGA-AACTT-AGATCACGTG
* * * *
87764874 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
64 TGAAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
*
87764912 TTAGGTCACGTGTGTAGGACTAAGTGCAGGCTACTACGTGTACC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
87764956 AGATTGTTGG
Statistics
Matches: 201, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
99 1 0.00
100 36 0.18
101 157 0.78
102 4 0.02
103 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (101 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAGAAACTTAGATCACGTGTG
AAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
Found at i:87784773 original size:29 final size:28
Alignment explanation
Indices: 87784685--87784786 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
87784675 TACTCAATCA
* *
87784685 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
87784714 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
87784743 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
87784772 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
87784787 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 47 0.81
30 3 0.05
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:87787021 original size:22 final size:23
Alignment explanation
Indices: 87786991--87787038 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
87786981 CTTTAACACA
*
87786991 TAAATAAAACAATACAAGAC-AT
1 TAAACAAAACAATACAAGACAAT
87787013 TAAACAAAACAATACAAGACAAT
1 TAAACAAAACAATACAAGACAAT
87787036 TAA
1 TAA
87787039 TTCAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.65, C:0.15, G:0.04, T:0.17
Consensus pattern (23 bp):
TAAACAAAACAATACAAGACAAT
Found at i:87787815 original size:24 final size:24
Alignment explanation
Indices: 87787783--87787926 Score: 76
Period size: 24 Copynumber: 5.8 Consensus size: 24
87787773 GCCATATAAC
*
87787783 GGGAAGCTCCGAAGAGCCATTATT
1 GGGAAGCTCCTAAGAGCCATTATT
* * * *
87787807 GGGAAGCTCATATGAGCCAATGTT
1 GGGAAGCTCCTAAGAGCCATTATT
* * * *
87787831 GGGAAGGTTC-AAGCGAGCCAATATC
1 GGGAAGCTCCTAA--GAGCCATTATT
**
87787856 GGGAAGCT-CTAGAGAGCCATTAAC
1 GGGAAGCTCCTA-AGAGCCATTATT
* ** *
87787880 AGGAAGCTTAATAAGAGCCTTTAATT
1 GGGAAGC-TCCTAAGAGCCATT-ATT
*
87787906 GGGAAGCTCACGAAGAGCCAT
1 GGGAAGCTC-CTAAGAGCCAT
87787927 ATATCAGGAC
Statistics
Matches: 88, Mismatches: 24, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
23 1 0.01
24 42 0.48
25 27 0.31
26 18 0.20
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (24 bp):
GGGAAGCTCCTAAGAGCCATTATT
Found at i:87793547 original size:19 final size:19
Alignment explanation
Indices: 87793523--87793562 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
87793513 CATTACTGTA
87793523 GCAGTAAATAGTGCAGTAT
1 GCAGTAAATAGTGCAGTAT
* *
87793542 GCAGTAATTAGTGTAGTAT
1 GCAGTAAATAGTGCAGTAT
87793561 GC
1 GC
87793563 TGGTCTTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (19 bp):
GCAGTAAATAGTGCAGTAT
Found at i:87800761 original size:18 final size:18
Alignment explanation
Indices: 87800738--87800777 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
87800728 TACTTGATAC
87800738 TGATATTACTGCATTGAT
1 TGATATTACTGCATTGAT
87800756 TGATATTACTGCATTGAT
1 TGATATTACTGCATTGAT
87800774 TGAT
1 TGAT
87800778 CCTGGTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (18 bp):
TGATATTACTGCATTGAT
Found at i:87803440 original size:16 final size:16
Alignment explanation
Indices: 87803419--87803450 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
87803409 AGAATGGAGT
87803419 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
87803435 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
87803451 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:87817286 original size:17 final size:18
Alignment explanation
Indices: 87817264--87817298 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87817254 ATTTGGGTCA
87817264 TGTGGG-CCACACGGGTG
1 TGTGGGCCCACACGGGTG
*
87817281 TGTGGGCCCATACGGGTG
1 TGTGGGCCCACACGGGTG
87817299 AACAACGCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.11, C:0.23, G:0.46, T:0.20
Consensus pattern (18 bp):
TGTGGGCCCACACGGGTG
Found at i:87829128 original size:26 final size:26
Alignment explanation
Indices: 87829090--87829139 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
87829080 TCTGATATGC
87829090 TATATGTTCTGAAAATATGAAAATGA
1 TATATGTTCTGAAAATATGAAAATGA
*
87829116 TATATGTTTTGAAAATATGAAAAT
1 TATATGTTCTGAAAATATGAAAAT
87829140 TCTAATTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (26 bp):
TATATGTTCTGAAAATATGAAAATGA
Found at i:87829360 original size:20 final size:19
Alignment explanation
Indices: 87829316--87829360 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
87829306 AATTATAGAC
87829316 TTTTGGACTTTTAATTTTG
1 TTTTGGACTTTTAATTTTG
*
87829335 TCTTGGAAC-TTTAATTTTG
1 TTTTGG-ACTTTTAATTTTG
87829354 ATTTTGG
1 -TTTTGG
87829361 TATTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.58
Consensus pattern (19 bp):
TTTTGGACTTTTAATTTTG
Found at i:87830318 original size:75 final size:75
Alignment explanation
Indices: 87830220--87830364 Score: 272
Period size: 75 Copynumber: 1.9 Consensus size: 75
87830210 AATTTATAAA
*
87830220 AAAAAAAGTACAACACATTATTACATTTCTTAGTTAACAATTTACACTACTTAAATACCAAACAC
1 AAAAAAAGTACAACACATTATTACATTTCTTAGTTAACAATTAACACTACTTAAATACCAAACAC
87830285 TCTAATTTAT
66 TCTAATTTAT
*
87830295 AAAAAAAGTACAACACATTATTACATTTCTTAGTTAACAATTAATACTACTTAAATACCAAACAC
1 AAAAAAAGTACAACACATTATTACATTTCTTAGTTAACAATTAACACTACTTAAATACCAAACAC
87830360 TCTAA
66 TCTAA
87830365 CATGGTAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.32
Consensus pattern (75 bp):
AAAAAAAGTACAACACATTATTACATTTCTTAGTTAACAATTAACACTACTTAAATACCAAACAC
TCTAATTTAT
Found at i:87834872 original size:18 final size:18
Alignment explanation
Indices: 87834835--87834873 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87834825 ATATAGAACT
*
87834835 AGATGCAAATACAATTAC
1 AGATGCAAATACAATCAC
87834853 AGATGCAAATACCAA-CAC
1 AGATGCAAATA-CAATCAC
87834871 AGA
1 AGA
87834874 AACATATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.51, C:0.21, G:0.13, T:0.15
Consensus pattern (18 bp):
AGATGCAAATACAATCAC
Found at i:87840506 original size:28 final size:28
Alignment explanation
Indices: 87840459--87840555 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
87840449 ATTTAAACCC
*
87840459 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
87840486 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
* *
87840514 TAGGGGTGATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87840542 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87840556 TGATCTACGC
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.14
28 54 0.86
ACGTcount: A:0.20, C:0.08, G:0.27, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:87842387 original size:19 final size:18
Alignment explanation
Indices: 87842350--87842393 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
87842340 ATACATACAG
87842350 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
87842367 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
87842386 TACTAATT
1 TAATAATT
87842394 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:87856145 original size:60 final size:60
Alignment explanation
Indices: 87856048--87856167 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
87856038 ATTCATAGTG
* * * *
87856048 GCCATACCTCATTCTGAAAGCTGTCTTAGGCATGCCCGACTCTTTAACTCGCAACTGATA
1 GCCATACCTCATTCCGAAAGCTGTCTTAGGCACGCCCGACTCCTCAACTCGCAACTGATA
*
87856108 GCCATACCTCATTCCGAAAGCTGTTTTAGGCACGCCCGACTCCTCAACTCGCAACTGATA
1 GCCATACCTCATTCCGAAAGCTGTCTTAGGCACGCCCGACTCCTCAACTCGCAACTGATA
87856168 ATAGCTGGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (60 bp):
GCCATACCTCATTCCGAAAGCTGTCTTAGGCACGCCCGACTCCTCAACTCGCAACTGATA
Found at i:87865779 original size:13 final size:13
Alignment explanation
Indices: 87865761--87865793 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
87865751 GGCAGTTTAT
87865761 TAAACTAATTAAC
1 TAAACTAATTAAC
87865774 TAAACTAATTAAC
1 TAAACTAATTAAC
87865787 T-AACTAA
1 TAAACTAA
87865794 ACTAAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:87868725 original size:6 final size:6
Alignment explanation
Indices: 87868716--87868773 Score: 107
Period size: 6 Copynumber: 9.5 Consensus size: 6
87868706 AATAAAATTG
87868716 AAATAA AAATAA AAATAA AAATAAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAATAA AAATAA AAATAA
87868765 AAATAA AAA
1 AAATAA AAA
87868774 GATAGGAGGA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 45 0.88
7 6 0.12
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:87868744 original size:25 final size:24
Alignment explanation
Indices: 87868716--87868773 Score: 107
Period size: 25 Copynumber: 2.4 Consensus size: 24
87868706 AATAAAATTG
87868716 AAATAAAAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAAAAT-AA
87868741 AAATAAAAATAAAAATAAAAATAA
1 AAATAAAAATAAAAATAAAAATAA
87868765 AAATAAAAA
1 AAATAAAAA
87868774 GATAGGAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 11 0.33
25 22 0.67
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (24 bp):
AAATAAAAATAAAAATAAAAATAA
Found at i:87868751 original size:31 final size:31
Alignment explanation
Indices: 87868701--87868773 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 31
87868691 CTTTCAAAAG
**
87868701 AAAATAATAAAATTGAAATAAAAATAAAAATA
1 AAAATAA-AAAATAAAAATAAAAATAAAAATA
87868733 AAAATAAAAAATAAAAATAAAAATAAAAATA
1 AAAATAAAAAATAAAAATAAAAATAAAAATA
87868764 AAAATAAAAA
1 AAAATAAAAA
87868774 GATAGGAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.18
Consensus pattern (31 bp):
AAAATAAAAAATAAAAATAAAAATAAAAATA
Found at i:87875446 original size:67 final size:68
Alignment explanation
Indices: 87875303--87875454 Score: 195
Period size: 67 Copynumber: 2.2 Consensus size: 68
87875293 CATCATGTGT
* * * *
87875303 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATG
1 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATG
87875368 TAG
66 TAG
* *
87875371 ACAAGAGAGCTACG-GA-A-TAT-ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACC
1 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACTA--TG-AGGACACC
87875432 ATGTAG
63 ATGTAG
87875438 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
87875455 TAAACTAGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
64 25 0.34
65 3 0.04
66 3 0.04
67 27 0.36
68 16 0.22
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATG
TAG
Found at i:87880697 original size:11 final size:11
Alignment explanation
Indices: 87880681--87880706 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
87880671 CAATCATCCC
87880681 TCATCCCTCAT
1 TCATCCCTCAT
87880692 TCATCCCTCAT
1 TCATCCCTCAT
87880703 TCAT
1 TCAT
87880707 TCATCATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.38
Consensus pattern (11 bp):
TCATCCCTCAT
Found at i:87898301 original size:40 final size:40
Alignment explanation
Indices: 87898244--87898427 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
87898234 TCGAATGATG
* *
87898244 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
87898284 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
87898324 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87898362 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87898403 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87898428 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 19 0.15
40 74 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87898379 original size:78 final size:80
Alignment explanation
Indices: 87898244--87898425 Score: 255
Period size: 78 Copynumber: 2.3 Consensus size: 80
87898234 TCGAATGATG
*
87898244 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
87898309 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
87898323 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
87898385 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
87898402 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87898426 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 28 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:87902640 original size:30 final size:30
Alignment explanation
Indices: 87902606--87902675 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
87902596 GACTAATTCT
*
87902606 ACACGGGCTGAACACACGTCC-GTGTGAGCC
1 ACACGGGATGAACACACG-CCTGTGTGAGCC
**
87902636 ACACGGGATGGCCACACGCCTGTGTGAGCC
1 ACACGGGATGAACACACGCCTGTGTGAGCC
*
87902666 ACACGAGATG
1 ACACGGGATG
87902676 GCCACACTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.13
Consensus pattern (30 bp):
ACACGGGATGAACACACGCCTGTGTGAGCC
Found at i:87902676 original size:30 final size:30
Alignment explanation
Indices: 87902618--87902682 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
87902608 ACGGGCTGAA
*
87902618 CACACGTCCGTGTGAGCCACACGGGATGGC
1 CACACGTCCGTGTGAGCCACACGAGATGGC
87902648 CACACG-CCTGTGTGAGCCACACGAGATGGC
1 CACACGTCC-GTGTGAGCCACACGAGATGGC
87902678 CACAC
1 CACAC
87902683 TCCCATGTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.23, C:0.35, G:0.29, T:0.12
Consensus pattern (30 bp):
CACACGTCCGTGTGAGCCACACGAGATGGC
Found at i:87911622 original size:6 final size:6
Alignment explanation
Indices: 87911613--87911679 Score: 62
Period size: 6 Copynumber: 11.0 Consensus size: 6
87911603 TCTTTAAGTA
* * * *
87911613 TATTTT TATTTT TATTTT TATCTT TATCTT TATTTT AATTTT AATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* **
87911661 AAGTTTT TACGTT TATTTT
1 TA-TTTT TATTTT TATTTT
87911680 GTCTTTATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
6 47 0.90
7 5 0.10
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (6 bp):
TATTTT
Found at i:87911638 original size:18 final size:18
Alignment explanation
Indices: 87911599--87911654 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
87911589 ATTGAGTCCA
** *
87911599 TTTATCTTTAAGTATATT
1 TTTATCTTTATTTTTATT
* *
87911617 TTTATTTTTATTTTTATC
1 TTTATCTTTATTTTTATT
*
87911635 TTTATCTTTATTTTAATT
1 TTTATCTTTATTTTTATT
87911653 TT
1 TT
87911655 AATTTTAAGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTATCTTTATTTTTATT
Found at i:87911647 original size:30 final size:30
Alignment explanation
Indices: 87911599--87911660 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
87911589 ATTGAGTCCA
* * *
87911599 TTTATCTTTAAGTATATTTTTATTTTTATT
1 TTTATCTTTAACTATATTTTAATTTTAATT
* *
87911629 TTTATCTTTATCTTTATTTTAATTTTAATT
1 TTTATCTTTAACTATATTTTAATTTTAATT
87911659 TT
1 TT
87911661 AAGTTTTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.71
Consensus pattern (30 bp):
TTTATCTTTAACTATATTTTAATTTTAATT
Found at i:87925200 original size:25 final size:24
Alignment explanation
Indices: 87925157--87925212 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
87925147 TAATTTATAG
* * *
87925157 AAATTAATAATTTAGTAAACTGAA
1 AAATTAATAATTGAATAAAATGAA
*
87925181 AAATTAACTAATTGAATAAAATTAA
1 AAATTAA-TAATTGAATAAAATGAA
87925206 AAATTAA
1 AAATTAA
87925213 GAGAAACTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (24 bp):
AAATTAATAATTGAATAAAATGAA
Found at i:87931613 original size:21 final size:22
Alignment explanation
Indices: 87931573--87931623 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
87931563 GTAAAATATA
*
87931573 AAATAAT--AAACATATTTAAT
1 AAATAATGAAAACATATGTAAT
87931593 -AATACATGAAAACATA-GTAAT
1 AAATA-ATGAAAACATATGTAAT
87931614 AAATAATGAA
1 AAATAATGAA
87931624 TTTTGAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 4 0.15
20 2 0.08
21 9 0.35
22 11 0.42
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (22 bp):
AAATAATGAAAACATATGTAAT
Found at i:87931809 original size:16 final size:15
Alignment explanation
Indices: 87931737--87931811 Score: 59
Period size: 14 Copynumber: 4.9 Consensus size: 15
87931727 AATATCAATT
87931737 TAATATGAA-AATAA
1 TAATATGAATAATAA
*
87931751 TAATGTGAATAATAA
1 TAATATGAATAATAA
*
87931766 T-ATACCTGAAAATATATA
1 TAATA--TGAATA-ATA-A
87931784 TAATA-G-ATAATAA
1 TAATATGAATAATAA
87931797 TAATATGAAATAATA
1 TAATATG-AATAATA
87931812 TATTGTTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
13 6 0.12
14 14 0.29
15 8 0.17
16 12 0.25
17 3 0.06
18 2 0.04
19 3 0.06
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (15 bp):
TAATATGAATAATAA
Found at i:87931840 original size:17 final size:17
Alignment explanation
Indices: 87931818--87931855 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
87931808 AATATATTGT
*
87931818 TAAAATGTA-AAATAATA
1 TAAAATATATAAAT-ATA
87931835 TAAAATATATAAATATA
1 TAAAATATATAAATATA
87931852 TAAA
1 TAAA
87931856 TATTATGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAATATA
Found at i:87940082 original size:19 final size:19
Alignment explanation
Indices: 87940045--87940082 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87940035 ACTTGTCAGA
*
87940045 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
87940064 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
87940083 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:87946418 original size:49 final size:47
Alignment explanation
Indices: 87946243--87946465 Score: 293
Period size: 47 Copynumber: 4.7 Consensus size: 47
87946233 CCCTTCGGGA
* * * * * *
87946243 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87946290 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87946337 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87946384 CTTATTACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87946433 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
87946466 GCGTAGAATC
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 92 0.59
48 2 0.01
49 62 0.40
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87946426 original size:96 final size:94
Alignment explanation
Indices: 87946243--87946465 Score: 293
Period size: 96 Copynumber: 2.3 Consensus size: 94
87946233 CCCTTCGGGA
* * * * *
87946243 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
87946308 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * * *
87946337 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTA-T-CACATATATAC
87946402 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
87946433 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
87946466 GCGTAGAATC
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 42 0.38
95 1 0.01
96 49 0.45
98 18 0.16
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:87950069 original size:40 final size:40
Alignment explanation
Indices: 87950037--87950308 Score: 391
Period size: 40 Copynumber: 6.8 Consensus size: 40
87950027 CCAGTATGAT
* * * *
87950037 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
87950077 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
87950117 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
87950157 TGCTCTTCGGGGTTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
87950197 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
87950237 TGCTCTTCGGGGTTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
87950277 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
87950309 CTCAATTCTC
Statistics
Matches: 204, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 204 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:87950153 original size:80 final size:80
Alignment explanation
Indices: 87950037--87950308 Score: 454
Period size: 80 Copynumber: 3.4 Consensus size: 80
87950027 CCAGTATGAT
* * * * * * *
87950037 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
87950102 TATCACTAGCACGAA
66 TATCACTAGCACGAA
87950117 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
1 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
87950182 TATCACTAGCACGAA
66 TATCACTAGCACGAA
87950197 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
1 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
*
87950262 CATCACTAGCACGAA
66 TATCACTAGCACGAA
* *
87950277 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCATCGAGACTTAGCCCGGATACATCACT
87950309 CTCAATTCTC
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 182 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
TATCACTAGCACGAA
Found at i:87952611 original size:49 final size:47
Alignment explanation
Indices: 87952436--87952658 Score: 293
Period size: 47 Copynumber: 4.7 Consensus size: 47
87952426 CCCTTCGGGA
* * * * * *
87952436 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87952483 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87952530 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87952577 CTTATTACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87952626 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
87952659 GCGTAGAATC
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 92 0.59
48 2 0.01
49 62 0.40
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87952619 original size:96 final size:94
Alignment explanation
Indices: 87952436--87952658 Score: 293
Period size: 96 Copynumber: 2.3 Consensus size: 94
87952426 CCCTTCGGGA
* * * * *
87952436 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
87952501 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * * *
87952530 CTTATCACACATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTA-T-CACATATATAC
87952595 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
87952626 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
87952659 GCGTAGAATC
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 42 0.38
95 1 0.01
96 49 0.45
98 18 0.16
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:87956263 original size:40 final size:40
Alignment explanation
Indices: 87956231--87956502 Score: 382
Period size: 40 Copynumber: 6.8 Consensus size: 40
87956221 CCAGCATGAT
* * * *
87956231 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
87956271 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
87956311 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
87956351 TGCTCTTCGGGGTTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
87956391 TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
87956431 TGCTCTTCGGGGTTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
87956471 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
87956503 CTCAATTCTC
Statistics
Matches: 202, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 202 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:87956364 original size:80 final size:80
Alignment explanation
Indices: 87956231--87956502 Score: 445
Period size: 80 Copynumber: 3.4 Consensus size: 80
87956221 CCAGCATGAT
* * * * * *
87956231 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
87956296 TATCACTAGCACGAA
66 TATCACTAGCACGAA
*
87956311 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
1 TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
87956376 TATCACTAGCACGAA
66 TATCACTAGCACGAA
87956391 TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
1 TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
*
87956456 CATCACTAGCACGAA
66 TATCACTAGCACGAA
* * *
87956471 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCATCGAGACCTAGCCCGGATACATCACT
87956503 CTCAATTCTC
Statistics
Matches: 180, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 180 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
TGCTCATCGAGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATA
TATCACTAGCACGAA
Found at i:87957733 original size:28 final size:28
Alignment explanation
Indices: 87957682--87957750 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
87957672 TTTAAAACCC
*
87957682 TAGGGGT-ATATCGATAATTATGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
* *
87957709 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
87957737 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87957751 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTATGCTCTT
Found at i:87959394 original size:20 final size:20
Alignment explanation
Indices: 87959371--87959408 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87959361 CACATCCAAA
*
87959371 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
87959391 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
87959409 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:87961665 original size:40 final size:40
Alignment explanation
Indices: 87961620--87961825 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
87961610 CGGAATACAA
*
87961620 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
87961660 CCGGATATAACGAGTTGCACAAATGCCTTCGGGTGTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
87961700 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
87961740 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
* ** ** * *
87961780 CCGGAGATAATTA-TTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTT-GCACGAATGCCTTCGGGTCTTAGC
87961820 CCGGAT
1 CCGGAT
87961826 GTCATTCAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:87967830 original size:28 final size:28
Alignment explanation
Indices: 87967779--87967846 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
87967769 TTTAAAACCC
*
87967779 TAGGGGT-ATATCGATAATTATGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
* *
87967806 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
87967834 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
87967847 TGATCTACGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 18 0.49
28 19 0.51
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTATGCTCTT
Found at i:87969474 original size:20 final size:20
Alignment explanation
Indices: 87969451--87969488 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87969441 CACATCCAAA
*
87969451 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
87969471 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
87969489 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:87972678 original size:40 final size:40
Alignment explanation
Indices: 87972619--87972760 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
87972609 AAATTGAATG
* * *
87972619 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
87972659 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
87972699 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
87972739 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
87972761 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:87972761 original size:40 final size:39
Alignment explanation
Indices: 87972658--87972786 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
87972648 TGCTGGAAAT
* * *
87972658 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
87972698 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
87972738 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
87972778 TATATCCGG
1 TATATCCGG
87972787 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:87975070 original size:40 final size:39
Alignment explanation
Indices: 87974905--87975088 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
87974895 AAATTGAATG
* * *
87974905 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
87974945 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
87974985 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
87975025 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
87975064 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
87975089 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:87975113 original size:80 final size:81
Alignment explanation
Indices: 87974945--87975133 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
87974935 GCTGGAAATT
* * * *
87974945 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
87975010 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
87975026 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
87975089 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
87975105 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
87975134 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:87989275 original size:39 final size:39
Alignment explanation
Indices: 87989221--87989382 Score: 261
Period size: 39 Copynumber: 4.2 Consensus size: 39
87989211 TGTGTATGAA
*
87989221 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
87989260 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
87989299 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
87989338 TGTGCGAGTTGTGATATCCGGGTTAAGTCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
87989377 TGTGCG
1 TGTGCG
87989383 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87989398 original size:39 final size:39
Alignment explanation
Indices: 87989221--87989413 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
87989211 TGTGTATGAA
* *
87989221 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
87989260 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
87989299 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
87989338 TGTGCGAGTTGTGATATCCGGGTTAAGTCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* ** * *
87989377 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
87989414 GTTTGAACGA
Statistics
Matches: 135, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 127 0.94
40 8 0.06
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87998321 original size:40 final size:39
Alignment explanation
Indices: 87998277--87998458 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
87998267 GTTCAAAACA
* * ** * *
87998277 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
87998317 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
87998357 CCTTTCGGGCTTAGCCCGG-TATCATAGCTCGCACAATTG
1 CC-TTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
87998396 CCTTCGGGCTTAGCCTGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
87998435 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
87998459 CTCGAACATT
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 15 0.12
39 63 0.50
40 43 0.34
41 6 0.05
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:87998391 original size:39 final size:39
Alignment explanation
Indices: 87998307--87998458 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
87998297 TATGGTAACC
* * * *
87998307 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
87998347 CGCACAATTGCCTTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCC-TTCGGGCTTAGCCCGGATATCATAGCT
*
87998386 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
87998425 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
87998459 CTCGAACATT
Statistics
Matches: 104, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
38 15 0.14
39 63 0.61
40 20 0.19
41 6 0.06
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:88000493 original size:39 final size:39
Alignment explanation
Indices: 88000431--88000593 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
88000421 TGTGTATGAA
*
88000431 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
88000470 TGTGAGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
88000509 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
88000548 TGTGCGAGTTGTGATATCCGGGTTAAGTTCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
88000588 TGTGCG
1 TGTGCG
88000594 GGTTACCATA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:88000609 original size:40 final size:40
Alignment explanation
Indices: 88000448--88000629 Score: 145
Period size: 39 Copynumber: 4.6 Consensus size: 40
88000438 ATTGTGATAT
* * *** *
88000448 CCGGGCTAAG-CCCGAAGGCAATTGTGAGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
88000487 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
88000526 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * *
88000565 CCGGGTTAAGTTCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
88000605 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
88000630 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 80 0.65
40 43 0.35
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:88004974 original size:53 final size:53
Alignment explanation
Indices: 88004894--88005000 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
88004884 CTCAATTTCT
88004894 AATTTTGATGATGATTTTGAAATGTGCCATTGATGAAATTATGAGCTTTGTAA
1 AATTTTGATGATGATTTTGAAATGTGCCATTGATGAAATTATGAGCTTTGTAA
88004947 AATTTTGATGATGATTTTGAAATGTGCCATTGATGAAATTATGAGCTTTGTAA
1 AATTTTGATGATGATTTTGAAATGTGCCATTGATGAAATTATGAGCTTTGTAA
88005000 A
1 A
88005001 CTTAGTTGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.41
Consensus pattern (53 bp):
AATTTTGATGATGATTTTGAAATGTGCCATTGATGAAATTATGAGCTTTGTAA
Found at i:88005629 original size:44 final size:41
Alignment explanation
Indices: 88005535--88005635 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
88005525 CAATGGTATT
* * *
88005535 TGGCACTAAGTGTGCAATTCAAAATAGCTTCGGCTATTTAA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGCTATTAAA
* * *
88005576 -GGCACTAAGTGTGCGATACCGAGATAGCTTCGGTTAATTGAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCGGCT-ATT-AAA
88005619 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
88005636 AATCGTTCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 16 0.32
41 13 0.26
42 3 0.06
43 2 0.04
44 16 0.32
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGCTATTAAA
Found at i:88007645 original size:28 final size:28
Alignment explanation
Indices: 88007597--88007665 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
88007587 ATTTAAACCC
*
88007597 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
88007624 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
88007652 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
88007666 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:88008317 original size:27 final size:27
Alignment explanation
Indices: 88008287--88008348 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
88008277 GGGCAAAATG
88008287 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
88008314 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
88008341 GTAATTTT
1 GTAATTTT
88008349 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:88008361 original size:27 final size:27
Alignment explanation
Indices: 88008328--88008407 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
88008318 TTTTACCCTA
* *
88008328 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
88008355 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
88008382 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
88008408 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:88008362 original size:54 final size:54
Alignment explanation
Indices: 88008303--88008429 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
88008293 TTACCCCACA
** *
88008303 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
88008356 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
88008411 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
88008430 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:88008415 original size:27 final size:28
Alignment explanation
Indices: 88008329--88008441 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
88008319 TTTACCCTAC
* * *
88008329 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
88008356 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
88008383 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
88008411 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
88008438 AGGG
1 AGGG
88008442 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:88008452 original size:27 final size:27
Alignment explanation
Indices: 88008422--88008739 Score: 372
Period size: 27 Copynumber: 11.8 Consensus size: 27
88008412 GGGTATTTCT
* *
88008422 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
88008449 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008476 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008502 GATAATTTTGTAAATCGAGGGTAAAATA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * *
88008530 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
88008557 GTAATTTTATAAATCGAAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008584 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008611 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
88008638 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008665 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
88008692 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
88008718 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTCTGTAAATCGAGGGTA
88008740 CTTTGGTAAT
Statistics
Matches: 249, Mismatches: 39, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
26 7 0.03
27 241 0.97
28 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:88008480 original size:54 final size:54
Alignment explanation
Indices: 88008422--88008739 Score: 422
Period size: 54 Copynumber: 5.9 Consensus size: 54
88008412 GGGTATTTCT
* ** * * * * *
88008422 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * *
88008476 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * *
88008530 GTAATTCTATAAATCAAGGGTAAAACGGTAATTTTATAAATCGAAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
88008584 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
88008638 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * *
88008692 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
88008740 CTTTGGTAAT
Statistics
Matches: 237, Mismatches: 27, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
53 5 0.02
54 232 0.98
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:88008775 original size:27 final size:26
Alignment explanation
Indices: 88008745--88008834 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
88008735 GGGTACTTTG
88008745 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
88008772 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
88008799 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
88008826 GTAATTTTA
1 GTAATTTTA
88008835 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:88008786 original size:53 final size:54
Alignment explanation
Indices: 88008729--88008834 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
88008719 ATAATTCTGT
* *
88008729 AAATCG-GGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
88008782 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
88008835 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:88008848 original size:27 final size:27
Alignment explanation
Indices: 88008745--88008849 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
88008735 GGGTACTTTG
* *
88008745 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
88008772 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
88008799 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
88008826 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
88008850 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:88011934 original size:28 final size:28
Alignment explanation
Indices: 88011886--88011954 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
88011876 ATTTAAACCC
*
88011886 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
88011913 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
88011941 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
88011955 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:88012603 original size:27 final size:27
Alignment explanation
Indices: 88012573--88012634 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
88012563 GGGCAAAATG
88012573 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
88012600 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
88012627 GTAATTTT
1 GTAATTTT
88012635 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:88012647 original size:27 final size:27
Alignment explanation
Indices: 88012614--88012693 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
88012604 TTTTACCCTA
* *
88012614 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
88012641 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
88012668 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
88012694 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:88012648 original size:54 final size:54
Alignment explanation
Indices: 88012589--88012715 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
88012579 TTACCCCACA
** *
88012589 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
88012642 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
88012697 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
88012716 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:88012701 original size:27 final size:28
Alignment explanation
Indices: 88012615--88012727 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
88012605 TTTACCCTAC
* * *
88012615 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
88012642 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
88012669 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
88012697 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
88012724 AGGG
1 AGGG
88012728 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:88013035 original size:26 final size:27
Alignment explanation
Indices: 88012708--88013024 Score: 404
Period size: 27 Copynumber: 11.8 Consensus size: 27
88012698 GGGTATTTCT
* **
88012708 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
88012735 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
88012762 GTAATTCTATAAATCGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
88012789 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
88012816 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
88012843 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
88012870 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
88012897 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
88012924 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
88012951 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
88012978 GTAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
88013004 ATAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
88013025 CTTTGGTAAT
Statistics
Matches: 251, Mismatches: 39, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
26 29 0.12
27 222 0.88
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:88013060 original size:27 final size:26
Alignment explanation
Indices: 88013030--88013119 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
88013020 GGGTACTTTG
88013030 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
88013057 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
88013084 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
88013111 GTAATTTTA
1 GTAATTTTA
88013120 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:88013071 original size:53 final size:54
Alignment explanation
Indices: 88013014--88013119 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
88013004 ATAATTCTGT
* *
88013014 AAATCG-GGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
88013067 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
88013120 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:88013133 original size:27 final size:27
Alignment explanation
Indices: 88013030--88013134 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
88013020 GGGTACTTTG
* *
88013030 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
88013057 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
88013084 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
88013111 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
88013135 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:88015887 original size:53 final size:53
Alignment explanation
Indices: 88015788--88015938 Score: 218
Period size: 53 Copynumber: 2.9 Consensus size: 53
88015778 CCTCTTTAAT
**
88015788 AACTGGGGCA-AAGCCCTTTTT-GGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
* * *
88015838 AACTGGGGCATAAGCCATTTTTCAATAAACTAGGGCATAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
* *
88015891 AACTGGGGCATAAGCCCTTTTACAATAAATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
88015939 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
50 10 0.11
51 10 0.11
52 11 0.12
53 57 0.65
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (53 bp):
AACTGGGGCATAAGCCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:88015892 original size:26 final size:26
Alignment explanation
Indices: 88015788--88015938 Score: 207
Period size: 27 Copynumber: 5.8 Consensus size: 26
88015778 CCTCTTTAAT
***
88015788 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
88015813 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
88015838 AACTGGGGCATAAGCCATTTTTCAATA
1 AACTGGGGCATAAGCC-CTTTTCAATA
* *
88015865 AACTAGGGCATAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
88015891 AACTGGGGCATAAGCCCTTTTACAATA
1 AACTGGGGCATAAGCCCTTTT-CAATA
*
88015918 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
88015939 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
25 32 0.28
26 33 0.29
27 49 0.43
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:88016013 original size:20 final size:20
Alignment explanation
Indices: 88015988--88016034 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
88015978 TTATGAATAC
*
88015988 ATCATGTGCATATGATA-CA
1 ATCATGTGCATATCATATCA
88016007 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
88016028 ATCATGT
1 ATCATGT
88016035 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:88016113 original size:25 final size:25
Alignment explanation
Indices: 88016070--88016119 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
88016060 ATAAGTAAAC
* * *
88016070 CCTAGGGGTATAACGGTCATTTTCA
1 CCTAGGGGCAAAACAGTCATTTTCA
88016095 CCTAGGGGCAAAACAGTCATTTTCA
1 CCTAGGGGCAAAACAGTCATTTTCA
88016120 TAATATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTCA
Found at i:88018241 original size:27 final size:27
Alignment explanation
Indices: 88018211--88018314 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
88018201 AATCTCATAT
* * *
88018211 CTGTAGGCTAGTATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATGCCC
88018238 CTGTAGGGTAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATGCCC
* * *
88018265 CTATCGGATAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATGCCC
*
88018292 CTGTAGGGTAGAATTACTGAAAT
1 CTGTAGGGTAGAATTACTAAAAT
88018315 ACCCTTGGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTAAAATGCCC
Found at i:88018333 original size:27 final size:27
Alignment explanation
Indices: 88018311--88018643 Score: 264
Period size: 27 Copynumber: 12.4 Consensus size: 27
88018301 AGAATTACTG
* * *
88018311 AAATACCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTGCAAAATTACCA
* ** *
88018337 GAATACCCTCAATTAGCAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
88018364 AAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
88018391 AAATACCCCTAATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
** ***
88018418 AAATACCCTAAATTTTTGAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
88018445 AAATACCCTCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * **
88018472 AAATATCCTTGATTTGGAAAATTACTG
1 AAATACCCTTGATTTGCAAAATTACCA
*
88018499 AAATACCCTTAATTTAG-AAAATTA-CA
1 AAATACCCTTGATTT-GCAAAATTACCA
* * *
88018525 GAAATACCCCTAATTTACAAAATTA-CA
1 -AAATACCCTTGATTTGCAAAATTACCA
*
88018552 GAAATACCCTTGACTTT-CAAAAATTACAA
1 -AAATACCCTTGA-TTTGC-AAAATTACCA
* *
88018581 AAATACCATTGGTTTGCAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
88018608 AAATA-CCTTGGTTTGTAGATTTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
*
88018634 AAACACCCTT
1 AAATACCCTT
88018644 ATAAGGTGAA
Statistics
Matches: 252, Mismatches: 46, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
26 39 0.15
27 190 0.75
28 22 0.09
29 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACCA
Found at i:88018911 original size:41 final size:41
Alignment explanation
Indices: 88018862--88018984 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
88018852 GAAAGAAGAA
88018862 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
* * *
88018903 ATTCAGGATAGCACGGTTGCTTGACGACTGTGGATCCACCG
1 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
* *
88018944 ATTAAGGATCGCATGGTTGCTTGATGACTATGGATCCACCG
1 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
88018985 GTGGCTTTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
Found at i:88019195 original size:25 final size:25
Alignment explanation
Indices: 88019127--88019196 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
88019117 CCAATTATTC
*
88019127 TGTTATTGATGGCTTTGTACCGATA
1 TGTTATTGATGGCTTTGTGCCGATA
* ** *
88019152 TGATATTGATGGCCATGTGCCGATT
1 TGTTATTGATGGCTTTGTGCCGATA
*
88019177 TGTTATCGATGGCTTTGTGC
1 TGTTATTGATGGCTTTGTGC
88019197 TGATCGTATT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.14, G:0.27, T:0.41
Consensus pattern (25 bp):
TGTTATTGATGGCTTTGTGCCGATA
Done.