Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 298 of 378
Found at i:90197160 original size:29 final size:30
Alignment explanation
Indices: 90197117--90197175 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
90197107 ATTTAATACG
*
90197117 AACTTTGGCAAAATTACA-TTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
90197146 AACTTTTGCATAATTTCACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
90197176 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:90204923 original size:325 final size:325
Alignment explanation
Indices: 90204333--90204985 Score: 1234
Period size: 325 Copynumber: 2.0 Consensus size: 325
90204323 CACATCTTTG
* *
90204333 CCGTCTTTCACGGAATATCAGAACCGATACTCAGTGCTAGTTTATACTCATCAAGTAATTCATAT
1 CCGTCTTCCACGGAATATCAGAACCGATACTCAGTGCTAGTTCATACTCATCAAGTAATTCATAT
90204398 AATTATATATTATTCAACAATAACCACAAAACATAACAAATCATGATAATAATAAGCATCATATC
66 AATTATATATTATTCAACAATAACCACAAAACATAACAAATCATGATAATAATAAGCATCATATC
*
90204463 ATATAAACGACATTAAATTGCTCAAAATGACAATTATGTTACTACATTTACACATGAACTTACCT
131 ATATAAACAACATTAAATTGCTCAAAATGACAATTATGTTACTACATTTACACATGAACTTACCT
*
90204528 CGGTATAAAATTATTAGCAATCGAGCCTATTCTTCGTAAACTTTGTTTTTCCCTTGATCGCGACT
196 CGGTATAAAATTATTAGCAATCGAGCCTATTCTTCGTAAACTTTGTTTTTCCCTCGATCGCGACT
90204593 TAAATCTCCTTTCTCTTGATCTATAATGTCAAATTAATCTTATTTAATAAATACATTCATCAAAA
261 TAAATCTCCTTTCTCTTGATCTATAATGTCAAATTAATCTTATTTAATAAATACATTCATCAAAA
* *
90204658 CCGTCTTCCACGGAATATCGGAATCGATACTCAGTGCTAGTTCATACTCATCAAGTAATTCATAT
1 CCGTCTTCCACGGAATATCAGAACCGATACTCAGTGCTAGTTCATACTCATCAAGTAATTCATAT
90204723 AATTATATATTATTCAACAATAACCACAAAACATAACAAATCATGATAATAATAAGCATCATATC
66 AATTATATATTATTCAACAATAACCACAAAACATAACAAATCATGATAATAATAAGCATCATATC
90204788 ATATAAACAACATTAAATTGCTCAAAATGACAATTATGTTACTACATTTACACATGAACTTACCT
131 ATATAAACAACATTAAATTGCTCAAAATGACAATTATGTTACTACATTTACACATGAACTTACCT
*
90204853 CGGTATAAAATTATTAGCAATCGAGCCTATTCTTTGTAAACTTTGTTTTTCCCTCGATCGCGACT
196 CGGTATAAAATTATTAGCAATCGAGCCTATTCTTCGTAAACTTTGTTTTTCCCTCGATCGCGACT
*
90204918 TAAATCTCGTTTCTCTTGATCTATAATGTCAAATTAATCTTATTTAATAAATACATTCATCAAAA
261 TAAATCTCCTTTCTCTTGATCTATAATGTCAAATTAATCTTATTTAATAAATACATTCATCAAAA
90204983 CCG
1 CCG
90204986 CATTTAATAC
Statistics
Matches: 320, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
325 320 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (325 bp):
CCGTCTTCCACGGAATATCAGAACCGATACTCAGTGCTAGTTCATACTCATCAAGTAATTCATAT
AATTATATATTATTCAACAATAACCACAAAACATAACAAATCATGATAATAATAAGCATCATATC
ATATAAACAACATTAAATTGCTCAAAATGACAATTATGTTACTACATTTACACATGAACTTACCT
CGGTATAAAATTATTAGCAATCGAGCCTATTCTTCGTAAACTTTGTTTTTCCCTCGATCGCGACT
TAAATCTCCTTTCTCTTGATCTATAATGTCAAATTAATCTTATTTAATAAATACATTCATCAAAA
Found at i:90205042 original size:30 final size:30
Alignment explanation
Indices: 90204997--90205056 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
90204987 ATTTAATACG
* *
90204997 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
90205027 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
90205057 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:90208543 original size:45 final size:45
Alignment explanation
Indices: 90208491--90208641 Score: 123
Period size: 45 Copynumber: 3.4 Consensus size: 45
90208481 AGACGGGGGG
*
90208491 CAGATCGAAGATAGCAAATCTAACATTCGTGTGTTTACATCGAAA
1 CAGATCGAAGATAGCAAATCTGACATTCGTGTGTTTACATCGAAA
* * * * * * * * *
90208536 CAGATCGAAGAT-GAAAGATTTGGCGTCTC-CGT-ATTAGA-CGGGGAG
1 CAGATCGAAGATAGCAA-ATCTGACAT-TCGTGTGTTTACATC--GAAA
*
90208581 CAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATC-AAA
1 CAGATCGAAGATAGCAAATCTGACATTCGTGTGTTTACATCGAAA
90208625 GCAGATCGAAGATAGCA
1 -CAGATCGAAGATAGCA
90208642 GATTTGGTGT
Statistics
Matches: 77, Mismatches: 20, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
43 1 0.01
44 10 0.13
45 57 0.74
46 8 0.10
47 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (45 bp):
CAGATCGAAGATAGCAAATCTGACATTCGTGTGTTTACATCGAAA
Found at i:90208575 original size:90 final size:90
Alignment explanation
Indices: 90208450--90208683 Score: 303
Period size: 90 Copynumber: 2.6 Consensus size: 90
90208440 TAGGGAACAA
* * * *
90208450 ATCGAAGA-AGCAGATTTGGCATCTCTATATTAGACGGGGGGCAGATCGAAGATAGCAAATCTAA
1 ATCGAAGATAGAAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTAA
90208514 CATTCGTGTGTTTACATCGAAA-CAG
66 CATTCGTGTGTTTACATC-AAAGCAG
* * *
90208539 ATCGAAGAT-GAAAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTG
1 ATCGAAGATAG-AAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTA
90208603 ACATTCGTGTGTTTACATCAAAGCAG
65 ACATTCGTGTGTTTACATCAAAGCAG
* * * * * * *
90208629 ATCGAAGATAGCAGATTTGGTGTCTCTGTATTTGATGAGGAGAAGATCAAAGATA
1 ATCGAAGATAGAAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATA
90208684 TTAACATAGT
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
89 12 0.10
90 113 0.90
91 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (90 bp):
ATCGAAGATAGAAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTAA
CATTCGTGTGTTTACATCAAAGCAG
Found at i:90210294 original size:14 final size:14
Alignment explanation
Indices: 90210255--90210296 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
90210245 TTGTATTACC
*
90210255 TATTATATTATTTA
1 TATTATATTATGTA
*
90210269 TATTTTA-T-TGTA
1 TATTATATTATGTA
90210281 TATTATATTATGTA
1 TATTATATTATGTA
90210295 TA
1 TA
90210297 ATTTCAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATATTATGTA
Found at i:90212399 original size:29 final size:28
Alignment explanation
Indices: 90212367--90212469 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
90212357 GTGACGAGAT
* *
90212367 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
90212396 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
90212425 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
90212454 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
90212470 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:90223366 original size:13 final size:14
Alignment explanation
Indices: 90223348--90223401 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 14
90223338 CTAGTCTCTC
90223348 TTAATTTTTAATT-
1 TTAATTTTTAATTA
*
90223361 TTAA-TTTTATTTA
1 TTAATTTTTAATTA
90223374 TTAATTTTTAATTAA
1 TTAATTTTTAATT-A
*
90223389 TTGAATTATTAAT
1 TT-AATTTTTAAT
90223402 AATTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 7 0.21
13 8 0.24
14 7 0.21
15 3 0.09
16 9 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TTAATTTTTAATTA
Found at i:90247279 original size:27 final size:27
Alignment explanation
Indices: 90247244--90247636 Score: 483
Period size: 27 Copynumber: 14.7 Consensus size: 27
90247234 CCAAAGTACT
90247244 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
90247271 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
90247298 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
90247325 CTTGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
90247352 CTCGATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
90247379 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
90247406 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
90247433 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
90247460 C-CTAATTTACATAATTACTGTTTTACC
1 CTC-GATTTACAGAATTACCGTTTTACC
* * *
90247487 C-CGATTTACATAATTATCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
90247513 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
90247540 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
90247567 CT-GATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
90247593 CTTGATTTACA-AATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
90247619 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
90247637 TAAAATACCC
Statistics
Matches: 323, Mismatches: 35, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
26 72 0.22
27 249 0.77
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:90247645 original size:27 final size:26
Alignment explanation
Indices: 90247589--90247647 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
90247579 ATTACTGTTT
* ***
90247589 TACCCTTGATTTACAAATTACTATTT
1 TACCCTCGATTTACAAATTACTAAAA
90247615 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTAC-AAATTACTAAAA
90247642 TACCCT
1 TACCCT
90247648 TGGTTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 13 0.46
27 15 0.54
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACTAAAA
Found at i:90248969 original size:9 final size:9
Alignment explanation
Indices: 90248957--90249033 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
90248947 TTTGATAAAC
90248957 ATGATATGT
1 ATGATATGT
*
90248966 ATGATATGCAC
1 ATGATATG--T
90248977 ATGATATGT
1 ATGATATGT
*
90248986 ATGATATGCAC
1 ATGATATG--T
*
90248997 ATGACATGT
1 ATGATATGT
*
90249006 ATGATATGCAC
1 ATGATATG--T
90249017 ATGATATGT
1 ATGATATGT
90249026 ATGATATG
1 ATGATATG
90249034 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:90248982 original size:11 final size:11
Alignment explanation
Indices: 90248966--90249037 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
90248956 CATGATATGT
90248966 ATGATATGCAC
1 ATGATATGCAC
*
90248977 ATGATATG--T
1 ATGATATGCAC
90248986 ATGATATGCAC
1 ATGATATGCAC
* *
90248997 ATGACATG--T
1 ATGATATGCAC
90249006 ATGATATGCAC
1 ATGATATGCAC
*
90249017 ATGATATG--T
1 ATGATATGCAC
90249026 ATGATATGCAC
1 ATGATATGCAC
90249037 A
1 A
90249038 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:90249045 original size:20 final size:20
Alignment explanation
Indices: 90248955--90249037 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
90248945 ATTTTGATAA
90248955 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90248975 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
90248995 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
90249015 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90249035 ACA
1 ACA
90249038 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:90249180 original size:23 final size:24
Alignment explanation
Indices: 90249091--90249209 Score: 197
Period size: 24 Copynumber: 5.0 Consensus size: 24
90249081 GAGGAAGTGA
90249091 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90249115 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90249139 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90249163 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90249186 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90249210 ATGATAAAGC
Statistics
Matches: 91, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
23 19 0.21
24 64 0.70
25 8 0.09
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90249437 original size:31 final size:31
Alignment explanation
Indices: 90249402--90249465 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
90249392 CGTTTACAGT
*
90249402 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
90249433 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
90249464 AA
1 AA
90249466 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:90252603 original size:186 final size:186
Alignment explanation
Indices: 90252289--90252676 Score: 586
Period size: 186 Copynumber: 2.1 Consensus size: 186
90252279 CAAAGTACTC
* * *
90252289 CGATTTATAGAATTACCGTTTTACCCTCATTTACAGAATTATGTTTTACCCTTGATTTACAGAAT
1 CGATTTACAGAATTACCGTTTTACCCTCATTTACAGAATTACGTTTTACCCTCGATTTACAGAAT
* **
90252354 TACTGTTTTACCCTGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCATTTTACC
66 TACTGTTTTACCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACC
90252419 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCT
131 CTCGATTTACAGAATTACCGTTTTACCCT-AGATTTACAGAATTACTATTTTACCCT
* *
90252475 CGATTTACAGAATTACCGTTTTACCC-CAATTTACATAATTACGTTTTACCC-CGATTTACATAA
1 CGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACGTTTTACCCTCGATTTACAGAA
*
90252538 TTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTT
65 TTACT-GTTTTACCCT-GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTT
* * * *
90252602 ACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCT
128 ACCCTCGATTTACAGAATTACCGTTTTACCCTAGATTTACAGAATTACTATTTTACCCT
*
90252661 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
90252677 TAAAATACCC
Statistics
Matches: 184, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
184 1 0.01
185 25 0.14
186 158 0.86
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (186 bp):
CGATTTACAGAATTACCGTTTTACCCTCATTTACAGAATTACGTTTTACCCTCGATTTACAGAAT
TACTGTTTTACCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACC
CTCGATTTACAGAATTACCGTTTTACCCTAGATTTACAGAATTACTATTTTACCCT
Found at i:90252677 original size:27 final size:27
Alignment explanation
Indices: 90252289--90252676 Score: 529
Period size: 27 Copynumber: 14.6 Consensus size: 27
90252279 CAAAGTACTC
*
90252289 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90252316 C-ATTTACAGAATTA-TGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90252341 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90252368 -GATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
90252394 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90252421 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
90252448 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
90252475 CGATTTACAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90252501 CAATTTACATAATTA-CGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90252526 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90252553 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90252580 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90252607 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90252634 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90252661 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
90252677 TAAAATACCC
Statistics
Matches: 325, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
25 34 0.10
26 73 0.22
27 217 0.67
28 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:90252713 original size:81 final size:81
Alignment explanation
Indices: 90252271--90252720 Score: 297
Period size: 81 Copynumber: 5.6 Consensus size: 81
90252261 CTCGACTTGT
* * *** *
90252271 AAAATTACCAAAGTACTC-CGATTTATAGAATTACCGTTTTACCCTC-ATTTACAGAATTA-TGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGT
*
90252333 TTTACCCTTGATTTAC
66 TTTACCCTCGATTTAC
* ***** *** ** * *
90252349 AGAATTACTGTTTTACCCT-GATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCAT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGT
90252413 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* **** * *****
90252429 AGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCG
1 AAAATTACCAAAATACCCTCGA-TTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCG
*
90252493 TTTTACCC-CAATTTAC
65 TTTTACCCTCGATTTAC
* **** * * * ***
90252509 ATAATTA-CGTTTTACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGT
90252572 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* *** * *** * *
90252588 AGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGT
90252653 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * * * *
90252669 AAAATTACTAAAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTT
1 AAAATTACCAAAATACCCTCGATTTATAG-AATTACCGCAATACCCTCGATTT
90252721 GTAAAACTAC
Statistics
Matches: 312, Mismatches: 50, Indels: 17
0.82 0.13 0.04
Matches are distributed among these distances:
78 85 0.27
79 34 0.11
80 58 0.19
81 135 0.43
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGT
TTTACCCTCGATTTAC
Found at i:90254013 original size:9 final size:9
Alignment explanation
Indices: 90254001--90254077 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
90253991 TTTGATAAAC
90254001 ATGATATGT
1 ATGATATGT
*
90254010 ATGATATGCAC
1 ATGATATG--T
90254021 ATGATATGT
1 ATGATATGT
*
90254030 ATGATATGCAC
1 ATGATATG--T
*
90254041 ATGACATGT
1 ATGATATGT
*
90254050 ATGATATGCAC
1 ATGATATG--T
90254061 ATGATATGT
1 ATGATATGT
90254070 ATGATATG
1 ATGATATG
90254078 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:90254026 original size:11 final size:11
Alignment explanation
Indices: 90254010--90254081 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
90254000 CATGATATGT
90254010 ATGATATGCAC
1 ATGATATGCAC
*
90254021 ATGATATG--T
1 ATGATATGCAC
90254030 ATGATATGCAC
1 ATGATATGCAC
* *
90254041 ATGACATG--T
1 ATGATATGCAC
90254050 ATGATATGCAC
1 ATGATATGCAC
*
90254061 ATGATATG--T
1 ATGATATGCAC
90254070 ATGATATGCAC
1 ATGATATGCAC
90254081 A
1 A
90254082 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:90254089 original size:20 final size:20
Alignment explanation
Indices: 90253999--90254081 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
90253989 ATTTTGATAA
90253999 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90254019 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
90254039 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
90254059 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90254079 ACA
1 ACA
90254082 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:90254163 original size:24 final size:24
Alignment explanation
Indices: 90254136--90254278 Score: 236
Period size: 24 Copynumber: 6.0 Consensus size: 24
90254126 GAGGAAGTGA
90254136 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90254160 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
90254184 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90254208 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90254232 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90254255 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90254279 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 3, Indels: 5
0.93 0.02 0.04
Matches are distributed among these distances:
23 19 0.17
24 86 0.76
25 8 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90254506 original size:31 final size:31
Alignment explanation
Indices: 90254471--90254534 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
90254461 CGTTTACAGT
*
90254471 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
90254502 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
90254533 AA
1 AA
90254535 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:90256737 original size:30 final size:30
Alignment explanation
Indices: 90256692--90256751 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
90256682 ATTTAATACG
*
90256692 AACTTTGGCAAAATTACATTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* * *
90256722 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
90256752 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:90260346 original size:93 final size:93
Alignment explanation
Indices: 90260239--90260409 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
90260229 GCCCCTAAGT
* *
90260239 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90260304 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90260332 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90260397 CGAGTTCGGATGC
66 CGAGTTCGGATGC
90260410 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90260406 original size:46 final size:46
Alignment explanation
Indices: 90260234--90260406 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
90260224 AACCCGCCCC
* * *
90260234 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
90260280 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
90260328 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
90260373 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90260407 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:90260848 original size:30 final size:30
Alignment explanation
Indices: 90260814--90260873 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
90260804 ATTTAATACG
90260814 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
90260844 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
90260874 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:90267897 original size:93 final size:93
Alignment explanation
Indices: 90267790--90267960 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
90267780 GCCCCTAAGT
* *
90267790 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90267855 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
90267883 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
90267948 CGAGTTCGGATGC
66 CGAGTTCGGATGC
90267961 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:90267957 original size:46 final size:46
Alignment explanation
Indices: 90267785--90267957 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
90267775 AACCCGCCCC
* * *
90267785 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
90267831 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
90267879 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
90267924 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90267958 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:90268402 original size:30 final size:30
Alignment explanation
Indices: 90268368--90268427 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
90268358 ATTTAATACG
90268368 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
90268398 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
90268428 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:90271410 original size:14 final size:15
Alignment explanation
Indices: 90271391--90271421 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
90271381 TATGTTTATT
90271391 ATATGTG-AAGTATC
1 ATATGTGAAAGTATC
90271405 ATATGTGAAAGTATC
1 ATATGTGAAAGTATC
90271420 AT
1 AT
90271422 GTCTTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (15 bp):
ATATGTGAAAGTATC
Found at i:90273384 original size:41 final size:41
Alignment explanation
Indices: 90273339--90273526 Score: 127
Period size: 41 Copynumber: 4.5 Consensus size: 41
90273329 AGTGAAATGA
* *
90273339 TATCGGCTTAAAGGTATAGCAAGCTTTAAGCTGGTGAATAT
1 TATCGGCTTAAAGGTCTAGCAAGCTTTAAGCCGGTGAATAT
*** * * * *
90273380 TATCGGGCTCCGA-GCCTAGC-AGGTGTAATGCCGGTGAAAGAT
1 TATC-GGCTTAAAGGTCTAGCAAGCTTTAA-GCCGGTG-AATAT
90273422 T-TCGGACTTAAAGGTCTAGCAAGCTTTAAGCCGGTGAATAT
1 TATCGG-CTTAAAGGTCTAGCAAGCTTTAAGCCGGTGAATAT
* * * * *
90273463 TATCGGGCTCT-GA-GCCTAGCAGGC-GTAATGCCGGTGAAATAA
1 TATC-GGCT-TAAAGGTCTAGCAAGCTTTAA-GCCGGTG-AATAT
90273505 TATCGGACTTAAAGGTCTAGCA
1 TATCGG-CTTAAAGGTCTAGCA
90273527 GCCTTATTGC
Statistics
Matches: 110, Mismatches: 23, Indels: 26
0.69 0.14 0.16
Matches are distributed among these distances:
40 11 0.10
41 44 0.40
42 39 0.35
43 16 0.15
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (41 bp):
TATCGGCTTAAAGGTCTAGCAAGCTTTAAGCCGGTGAATAT
Found at i:90273411 original size:83 final size:84
Alignment explanation
Indices: 90273299--90273526 Score: 352
Period size: 83 Copynumber: 2.7 Consensus size: 84
90273289 GTGATGAATT
* * * * *
90273299 TCGGGCTTTGAGCCTAGTAGGCATAATGCCAGTGAAATGATATCGG-CTTAAAGGTATAGCAAGC
1 TCGGGCTCTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
*
90273363 TTTAAGCTGGTGAATATTA
66 TTTAAGCCGGTGAATATTA
* * *
90273382 TCGGGCTCCGAGCCTAGCAGGTGTAATGCCGGTGAAA-GATTTCGGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
90273446 TTTAAGCCGGTGAATATTA
66 TTTAAGCCGGTGAATATTA
*
90273465 TCGGGCTCTGAGCCTAGCAGGCGTAATGCCGGTGAAATAATATCGGACTTAAAGGTCTAGCA
1 TCGGGCTCTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCA
90273527 GCCTTATTGC
Statistics
Matches: 130, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
82 7 0.05
83 101 0.78
84 22 0.17
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (84 bp):
TCGGGCTCTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
TTTAAGCCGGTGAATATTA
Found at i:90273442 original size:42 final size:42
Alignment explanation
Indices: 90273395--90273527 Score: 121
Period size: 42 Copynumber: 3.2 Consensus size: 42
90273385 GGCTCCGAGC
*
90273395 CTAGCAGGTGTAATGCCGGTGAAAGATTTCGGACTTAAAGGT
1 CTAGCAGGTGTAATGCCGGTGAAAAATTTCGGACTTAAAGGT
* * * * * *
90273437 CTAGCAAGCTTTAA-GCCGGTG-AATATTATCGGGCTCT-GA-GC
1 CTAGC-AGGTGTAATGCCGGTGAAAAATT-TCGGACT-TAAAGGT
* *
90273478 CTAGCAGGCGTAATGCCGGTGAAATAATATCGGACTTAAAGGT
1 CTAGCAGGTGTAATGCCGGTGAAA-AATTTCGGACTTAAAGGT
90273521 CTAGCAG
1 CTAGCAG
90273528 CCTTATTGCT
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
40 5 0.07
41 19 0.28
42 28 0.41
43 17 0.25
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (42 bp):
CTAGCAGGTGTAATGCCGGTGAAAAATTTCGGACTTAAAGGT
Found at i:90276391 original size:33 final size:34
Alignment explanation
Indices: 90276354--90276418 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
90276344 AATATCATTG
*
90276354 TGGGCCTTTG-CCCA-TACAGTAACAGTATCAGTA
1 TGGGCCTTAGCCCCATTACAGTAA-AGTATCAGTA
*
90276387 TGGGCCTTAGCCCCATTTCAGTAAAGTATCAG
1 TGGGCCTTAGCCCCATTACAGTAAAGTATCAG
90276419 AGATGCATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 9 0.32
34 12 0.43
35 7 0.25
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (34 bp):
TGGGCCTTAGCCCCATTACAGTAAAGTATCAGTA
Found at i:90281714 original size:22 final size:22
Alignment explanation
Indices: 90281689--90281745 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
90281679 TAGTGCCTAG
*
90281689 TAGGCTTAGTGCCAGTGTTATT
1 TAGGCTTAGTGCCAATGTTATT
* *
90281711 TAGGCTTAGCGGCAATGTTATT
1 TAGGCTTAGTGCCAATGTTATT
*
90281733 CAGGCTTAGTGCC
1 TAGGCTTAGTGCC
90281746 TAGTAGGCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (22 bp):
TAGGCTTAGTGCCAATGTTATT
Found at i:90281753 original size:38 final size:38
Alignment explanation
Indices: 90281711--90281795 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
90281701 CAGTGTTATT
* * *
90281711 TAGGCTTAGCGGCAATGTTATTCAGGCTTAGTGCCTAG
1 TAGGCTTAGCGCCAATATTATTCAAGCTTAGTGCCTAG
** **
90281749 TAGGCTTAATGCCGGTATTATTCAAGCTTAGTGCCTAG
1 TAGGCTTAGCGCCAATATTATTCAAGCTTAGTGCCTAG
90281787 TAGGCTTAG
1 TAGGCTTAG
90281796 TGCCGGTGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (38 bp):
TAGGCTTAGCGCCAATATTATTCAAGCTTAGTGCCTAG
Found at i:90281800 original size:38 final size:38
Alignment explanation
Indices: 90281728--90281808 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
90281718 AGCGGCAATG
*
90281728 TTATTCAGGCTTAGTGCCTAGTAGGCTTAATGCCGGTA
1 TTATTCAAGCTTAGTGCCTAGTAGGCTTAATGCCGGTA
* *
90281766 TTATTCAAGCTTAGTGCCTAGTAGGCTTAGTGCCGGTG
1 TTATTCAAGCTTAGTGCCTAGTAGGCTTAATGCCGGTA
90281804 TTATT
1 TTATT
90281809 TAGACTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (38 bp):
TTATTCAAGCTTAGTGCCTAGTAGGCTTAATGCCGGTA
Found at i:90289355 original size:46 final size:47
Alignment explanation
Indices: 90289151--90289461 Score: 209
Period size: 46 Copynumber: 6.7 Consensus size: 47
90289141 TGGGTAAGGT
90289151 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGC-TATCATCTTCGAG
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTA-CATC-TCGAG
* * * ** * *
90289200 GCCGATGCCATGTCTC-GAACATGGTCTTTCACTAGCTCTCACATAACCAT
1 GCCGATGCCATGTCCCAG-ACAT-GTCTTACACTGGCT-T-ACATCTCGAG
* * * *
90289250 GCCAATGCCATGTCCTAGACATGGTCTTACACTGAC--ACATCTC-ACA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGA-G
* *
90289296 GCTGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
* * * * * *
90289342 GCCGATG-CATGTCCTAGACATGTCTTACACTAGCACT-CGTCTTGAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCGAG
* * *
90289388 GCCGATGCCATGTCCCAG----GTCTTACACTGGCTCT-CATATTGTG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
* *
90289431 TCCGATG-CATGTCCCAAACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
90289462 AGCTCACACA
Statistics
Matches: 208, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
42 9 0.04
43 24 0.12
44 12 0.06
45 14 0.07
46 71 0.34
47 11 0.05
48 2 0.01
49 29 0.14
50 30 0.14
51 5 0.02
52 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
Found at i:90289436 original size:43 final size:42
Alignment explanation
Indices: 90289363--90289446 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 42
90289353 TCCTAGACAT
* *
90289363 GTCTTACACTAGCACTCGTCTTGATGCCGATGCCATGTCCCAG
1 GTCTTACACTAGCACTCATATTGATGCCGATG-CATGTCCCAG
* *
90289406 GTCTTACACTGGCTCTCATATTG-TGTCCGATGCATGTCCCA
1 GTCTTACACTAGCACTCATATTGATG-CCGATGCATGTCCCA
90289447 AACATGTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 11 0.31
43 25 0.69
ACGTcount: A:0.18, C:0.31, G:0.20, T:0.31
Consensus pattern (42 bp):
GTCTTACACTAGCACTCATATTGATGCCGATGCATGTCCCAG
Found at i:90300514 original size:25 final size:25
Alignment explanation
Indices: 90300498--90300551 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
90300488 CTCGTATGAT
*
90300498 CTTACTATTATTTAGCTCGGAGGAG
1 CTTACCATTATTTAGCTCGGAGGAG
*
90300523 CTTACCATTATTTAGCTCAGAGGAG
1 CTTACCATTATTTAGCTCGGAGGAG
90300548 CTTA
1 CTTA
90300552 TCGTTTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (25 bp):
CTTACCATTATTTAGCTCGGAGGAG
Found at i:90302737 original size:40 final size:40
Alignment explanation
Indices: 90302654--90302874 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
90302644 ACCCAAGTAT
** * *
90302654 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
90302692 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
90302732 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
90302772 CTTCAGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
90302812 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
90302853 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
90302875 CATTCGAATA
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.63
41 29 0.19
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:90304295 original size:16 final size:16
Alignment explanation
Indices: 90304274--90304304 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90304264 AACATGAGAG
*
90304274 CTTTTTTTTTCTTCTT
1 CTTTTTCTTTCTTCTT
90304290 CTTTTTCTTTCTTCT
1 CTTTTTCTTTCTTCT
90304305 ATTTGGCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
CTTTTTCTTTCTTCTT
Found at i:90304305 original size:55 final size:55
Alignment explanation
Indices: 90304232--90304336 Score: 201
Period size: 55 Copynumber: 1.9 Consensus size: 55
90304222 GCTCTTTTTC
90304232 CTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTTCTT
1 CTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTTCTT
*
90304287 CTTCTTTTTCTTTCTTCTATTTGGCCAAGAACAACATGAGAGCTTTTTTT
1 CTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTT
90304337 CTTTCTTTTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (55 bp):
CTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTTCTT
Found at i:90310481 original size:55 final size:53
Alignment explanation
Indices: 90310352--90310749 Score: 354
Period size: 55 Copynumber: 7.5 Consensus size: 53
90310342 AACTTACCAT
* * * *
90310352 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACCCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGG-ATCCTTGCCTTATAGAACTCATCAA
* **
90310405 TGCCATGCCTTGGCATGGTCTTACATGGGGCCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGATCC-TTGCCTTATAG-AACTCATCAA
* *
90310460 TGCCATGTCTTGACATGGTCTTACAT-GATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGA--TCCTTGCCTTATAGAACTCATCAA
* * ****
90310514 TGCCATGCCTTGGCATGGTCTTACAT-GATAC---CCTTATCTTTC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGATCCTTGCCTTATAGAACTCATCAA
** * * *
90310560 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTAT-GAAATCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGG-ATCCTTGCCTTATAGAACTCATCAA
*
90310614 TGCCATGCCTTGGCATGGTCTTACATTGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACA-TGGATCC-TTGCCTTATAG-AACTCATCAA
* * *
90310669 TGCCATGTCTTGACATGGACTTACAT-GATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGA--TCCTTGCCTTATAGAACTCATCAA
* *
90310723 TGACATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
90310750 ATATCCTTAT
Statistics
Matches: 278, Mismatches: 43, Indels: 46
0.76 0.12 0.13
Matches are distributed among these distances:
46 9 0.03
47 13 0.05
48 4 0.01
49 10 0.04
52 15 0.05
53 57 0.21
54 82 0.29
55 84 0.30
56 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGATCCTTGCCTTATAGAACTCATCAA
Found at i:90310537 original size:54 final size:54
Alignment explanation
Indices: 90310352--90310757 Score: 381
Period size: 54 Copynumber: 7.6 Consensus size: 54
90310342 AACTTACCAT
* * * * *
90310352 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACCCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* ***
90310405 TGCCATGCCTTGGCATGGTCTTACATG-GGGCCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * *
90310460 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * **
90310514 TGCCATGCCTTGGCATGGTCTTACATGATACCCTTATCTT-T----C-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
** * * * *
90310560 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTAT-GAAATCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* *
90310614 TGCCATGCCTTGGCATGGTCTTACATTG-GA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACA-TGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
90310669 TGCCATGTCTTGACATGGACTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* *
90310723 TGACATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
90310758 ATCTTACCAA
Statistics
Matches: 287, Mismatches: 46, Indels: 39
0.77 0.12 0.10
Matches are distributed among these distances:
46 9 0.03
47 24 0.08
48 4 0.01
49 1 0.00
52 8 0.03
53 55 0.19
54 97 0.34
55 85 0.30
56 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:90310724 original size:209 final size:209
Alignment explanation
Indices: 90310364--90310810 Score: 795
Period size: 209 Copynumber: 2.1 Consensus size: 209
90310354 CCATGTCTTG
* * *
90310364 ACATGGTCTTACGTGGTATCCTTGCCTTATGAACCCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAAACCACCAATGCCATGCCTTGGCATGGTCTTAC
* *
90310429 ATGGGGCCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGACTTACATGATTTCCT
* *
90310494 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATACCCTTATCTTTCCAA
131 TGCCTTATAGAACTTATCAATGACATGCCTTGGCATGGTCTTACATGATACCCTTATCTTACCAA
90310559 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
*
90310573 ACATGGTCTTACATGGTATCCTTGTCTTATGAAATCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAAACCACCAATGCCATGCCTTGGCATGGTCTTAC
*
90310638 ATTGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGACTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGACTTACATGATTTCCT
*
90310703 TGCCTTATAGAACTTATCAATGACATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATCAATGACATGCCTTGGCATGGTCTTACATGATACCCTTATCTTACCAA
90310768 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
*
90310782 ACATGGTCTTACATGGTATCATTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
90310811 CCAAATGCCA
Statistics
Matches: 227, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 227 1.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (209 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAAACCACCAATGCCATGCCTTGGCATGGTCTTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGACTTACATGATTTCCT
TGCCTTATAGAACTTATCAATGACATGCCTTGGCATGGTCTTACATGATACCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:90310789 original size:47 final size:47
Alignment explanation
Indices: 90310736--90310857 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
90310726 CATGCCTTGG
*
90310736 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
90310783 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
90310830 CATGGTCTTACATGGTATCCTTTTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
90310858 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:90313008 original size:27 final size:27
Alignment explanation
Indices: 90312976--90313163 Score: 213
Period size: 27 Copynumber: 7.0 Consensus size: 27
90312966 AAACATACAT
*
90312976 CACATAGGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAACTGTCATTTTAC
*
90313003 CACATAAGGGCAAAACCGTCATTTTA-
1 CACATAAGGGCAAAACTGTCATTTTAC
* * *
90313029 -ACACAAGGG-AAAAATAGTCATTTTGC
1 CACATAAGGGCAAAACT-GTCATTTTAC
* *
90313055 CACATAAGGGTAAAACCGTCATTTTAC
1 CACATAAGGGCAAAACTGTCATTTTAC
* *
90313082 CACATAAGGGAAAAACTGTCATTTTAT
1 CACATAAGGGCAAAACTGTCATTTTAC
* *
90313109 CACATAAGTGCAAAA-TCGTCATTTTAA
1 CACATAAGGGCAAAACT-GTCATTTTAC
* *
90313136 CACATAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAACTGTCATTTTAC
90313163 C
1 C
90313164 TTACAGGGGT
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
24 4 0.03
25 16 0.12
26 1 0.01
27 110 0.81
28 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACTGTCATTTTAC
Found at i:90313115 original size:54 final size:53
Alignment explanation
Indices: 90312976--90313163 Score: 236
Period size: 54 Copynumber: 3.5 Consensus size: 53
90312966 AAACATACAT
* *
90312976 CACATAGGGGCAAAACTGTCATTTTACCACATAAGGGCAAAACCGTCATTTTA
1 CACATAAGGGAAAAACTGTCATTTTACCACATAAGGGCAAAACCGTCATTTTA
* * *
90313029 -ACACAAGGGAAAAA-TAGTCATTTTGCCACATAAGGGTAAAACCGTCATTTTA
1 CACATAAGGGAAAAACT-GTCATTTTACCACATAAGGGCAAAACCGTCATTTTA
* * *
90313081 CCACATAAGGGAAAAACTGTCATTTTATCACATAAGTGCAAAATCGTCATTTTAA
1 -CACATAAGGGAAAAACTGTCATTTTACCACATAAGGGCAAAACCGTCATTTT-A
* * *
90313136 CACATAAGGGCAAAACAGTTATTTTACC
1 CACATAAGGGAAAAACTGTCATTTTACC
90313164 TTACAGGGGT
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
51 1 0.01
52 45 0.39
54 67 0.58
55 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (53 bp):
CACATAAGGGAAAAACTGTCATTTTACCACATAAGGGCAAAACCGTCATTTTA
Found at i:90313186 original size:27 final size:27
Alignment explanation
Indices: 90313156--90313243 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
90313146 CAAAACAGTT
* * *
90313156 ATTTTACCTTACAGGGGTATTACGGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
*
90313183 ATTTTACCCTATAGGGATATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* *
90313210 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
90313237 ATTTTAC
1 ATTTTAC
90313244 AAGTAAATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCGGTC
Found at i:90316853 original size:46 final size:45
Alignment explanation
Indices: 90316803--90316973 Score: 170
Period size: 45 Copynumber: 3.7 Consensus size: 45
90316793 GATGTTGGCA
*
90316803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATG-AAACG
* * *
90316849 TCCGAACTCGTTGAGTTGCGTCCGAGTT--C--GTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTG-GATG-AA--A--CG
* *
90316896 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGAAACG
* * *
90316941 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
90316974 AGGGGCGGGT
Statistics
Matches: 103, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 32 0.31
46 27 0.26
47 28 0.27
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGAAACG
Found at i:90324371 original size:45 final size:45
Alignment explanation
Indices: 90324322--90324491 Score: 202
Period size: 45 Copynumber: 3.8 Consensus size: 45
90324312 TGGTTGAGCA
*
90324322 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
* * * * * *
90324367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGC-A-ACG
90324413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
* *
90324459 -CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
90324492 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
44 2 0.02
45 65 0.62
46 34 0.33
47 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
Found at i:90324474 original size:91 final size:91
Alignment explanation
Indices: 90324319--90324486 Score: 293
Period size: 91 Copynumber: 1.8 Consensus size: 91
90324309 GGATGGTTGA
* *
90324319 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCATTGAGTT
90324384 GAGTCCGAGTTCGTGAATGTAACTAG
66 GAGTCCGAGTTCGTGAATGTAACTAG
*
90324410 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGTCCGAACTCATTGAGT
90324474 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
90324487 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 70 0.96
92 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCATTGAGTT
GAGTCCGAGTTCGTGAATGTAACTAG
Found at i:90326835 original size:43 final size:43
Alignment explanation
Indices: 90326769--90326925 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
90326759 AGCTCGTACA
* *
90326769 ATGCCAGCGTCCCAGACGTGGTCTTATATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
*
90326812 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AATTCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAA-TCAAATATCG
* * * * *
90326854 ATGCCGATGTCTCAGACATGGTCTTACATGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATC-AAATATCG
90326898 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
90326926 CAAAATCACA
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
42 28 0.30
43 34 0.37
44 31 0.33
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:90326870 original size:42 final size:43
Alignment explanation
Indices: 90326802--90326932 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 43
90326792 TTATATGTAA
90326802 TCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG-AAT-
1 TCAAATA-CGATGCCA-TGTCCCAGACAGGGTCTTACACGAAATC
* * *
90326845 TCAAATACGATGCCGATGTCTCAGACATGGTCTTACATGTAAATC
1 TCAAATACGATGCC-ATGTCCCAGACAGGGTCTTACACG-AAATC
* *
90326890 TCAAAT-CGATGCCAACGTCCCAGAC-GTGGTCTTACACAAAATC
1 TCAAATACGATGCC-ATGTCCCAGACAG-GGTCTTACACGAAATC
90326933 ACATATCGAA
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
42 27 0.36
43 13 0.18
44 28 0.38
45 6 0.08
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
TCAAATACGATGCCATGTCCCAGACAGGGTCTTACACGAAATC
Found at i:90331620 original size:41 final size:44
Alignment explanation
Indices: 90331550--90331671 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 44
90331540 TGCTATCTCG
* * *
90331550 TATCGACGCCATTGTCCCAGACA-GTGTCTTACACGAATCA-A-A
1 TATCGATGCCAATGTCCCAGACATG-GTCTTACACGAACCACATA
* *
90331592 TA-CGATGTCGATGTCCCAGACATGGTCTTACACGTAACCACATA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACG-AACCACATA
**
90331636 TATCGATGCCAATGTCCCAGATGTGGTCTTACACGA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGA
90331672 GAACACAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 26 0.39
42 7 0.11
43 1 0.02
44 4 0.06
45 28 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (44 bp):
TATCGATGCCAATGTCCCAGACATGGTCTTACACGAACCACATA
Found at i:90332259 original size:13 final size:15
Alignment explanation
Indices: 90332232--90332262 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
90332222 TAAAAAATTC
90332232 CAATCCAAAACATAT
1 CAATCCAAAACATAT
*
90332247 CAATCCAAAATATAT
1 CAATCCAAAACATAT
90332262 C
1 C
90332263 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (15 bp):
CAATCCAAAACATAT
Found at i:90338605 original size:33 final size:34
Alignment explanation
Indices: 90338568--90338639 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
90338558 GACAGCCTAG
*
90338568 TATCAGTGT-GGCCTTAGCCTATTACAGCAACAA
1 TATCAGTGTGGGCCTTAGCCCATTACAGCAACAA
*
90338601 TATCAGTGTGGGCCTTAGCCCATTACAGTAACAA
1 TATCAGTGTGGGCCTTAGCCCATTACAGCAACAA
90338635 TATCA
1 TATCA
90338640 TAAATACGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 9 0.25
34 27 0.75
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (34 bp):
TATCAGTGTGGGCCTTAGCCCATTACAGCAACAA
Found at i:90338701 original size:22 final size:23
Alignment explanation
Indices: 90338662--90338704 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
90338652 GAAGTCTTAC
*
90338662 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
90338685 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
90338705 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:90341961 original size:27 final size:27
Alignment explanation
Indices: 90341922--90342011 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
90341912 CAATTTGACG
* *
90341922 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATAACTGTTTTGCCCTTATGAGGTA
* * *
90341949 AAATGACTGTTTTGCCCCTATGTGGTA
1 AAATAACTGTTTTGCCCTTATGAGGTA
* *
90341976 AAAAAATTGTTTTGCCCTTATGTA-GTA
1 AAATAACTGTTTTGCCCTTATG-AGGTA
90342003 AAATAACTG
1 AAATAACTG
90342012 AAATGCCCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (27 bp):
AAATAACTGTTTTGCCCTTATGAGGTA
Found at i:90345063 original size:2 final size:2
Alignment explanation
Indices: 90345056--90345083 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
90345046 CGGCTCTAGC
90345056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90345084 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90346012 original size:40 final size:40
Alignment explanation
Indices: 90345957--90346124 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
90345947 TGAATGATAC
* *
90345957 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
90345997 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
90346037 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
90346077 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
90346117 CC-GGCTAA
1 CCGGGCTAA
90346125 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 96 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:90351907 original size:29 final size:29
Alignment explanation
Indices: 90351865--90351920 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
90351855 TCTCTTTACT
90351865 AGTAACTTTACTAGTAGTGGTTTCAACAC
1 AGTAACTTTACTAGTAGTGGTTTCAACAC
90351894 AGTAACTTTACTAGTAGTGGTTTCAAC
1 AGTAACTTTACTAGTAGTGGTTTCAAC
90351921 CATAATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (29 bp):
AGTAACTTTACTAGTAGTGGTTTCAACAC
Found at i:90354755 original size:49 final size:48
Alignment explanation
Indices: 90354702--90355098 Score: 613
Period size: 49 Copynumber: 8.3 Consensus size: 48
90354692 ATGAGATATT
90354702 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
90354751 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
*
90354798 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
90354847 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
90354896 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTA
* *
90354945 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
* *
90354992 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
* * * * * * *
90355039 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
*
90355086 TAAATGTGATAAG
1 TATATGTGATAAG
90355099 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 15, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 143 0.43
48 5 0.02
49 182 0.55
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTA
Found at i:90354864 original size:96 final size:96
Alignment explanation
Indices: 90354702--90355098 Score: 638
Period size: 96 Copynumber: 4.1 Consensus size: 96
90354692 ATGAGATATT
90354702 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
90354767 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
90354798 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
90354863 TAATGGCCGATGTGATGAATGTGAAAGTGTGTA
66 TAATGGCCGATGTGATGAATGTGAAA--GTGTA
90354896 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
*
90354961 TAATGGCCGATGTGATGAATGTG-AAGATATA
66 TAATGGCCGATGTGATGAATGTGAAAG-TGTA
* * *
90354992 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAGGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
* * * * * *
90355055 GAGTGGCCAACGTGATGGATGTGGAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
90355086 TAAATGTGATAAG
1 TATATGTGATAAG
90355099 TCCCGAAGGG
Statistics
Matches: 284, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 53 0.19
95 4 0.01
96 133 0.47
97 2 0.01
98 92 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:90365267 original size:39 final size:39
Alignment explanation
Indices: 90365213--90365453 Score: 401
Period size: 39 Copynumber: 6.2 Consensus size: 39
90365203 TGTGTATGAA
*
90365213 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
90365252 TGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90365291 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
90365330 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90365369 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90365408 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
90365448 TGTGCG
1 TGTGCG
90365454 GGTTACCATA
Statistics
Matches: 188, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 171 0.91
40 17 0.09
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:90373273 original size:39 final size:39
Alignment explanation
Indices: 90373219--90373373 Score: 269
Period size: 39 Copynumber: 4.0 Consensus size: 39
90373209 TGTGTATGAA
*
90373219 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
90373258 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90373297 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
90373335 TGTGCGAGTTGTGATAT-CGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
90373373 T
1 T
90373374 TTGATGCCGA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
37 20 0.18
38 16 0.15
39 74 0.67
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:90376264 original size:27 final size:26
Alignment explanation
Indices: 90376209--90376277 Score: 97
Period size: 27 Copynumber: 2.7 Consensus size: 26
90376199 AGCATGGCTG
90376209 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATATGACAGAGTCA
*
90376235 CCAGAACAGATAATTGTGACAGAGAT-A
1 CCAGAACAGATAA-TATGACAGAG-TCA
90376262 CCAGAACAGAT-ATATG
1 CCAGAACAGATAATATG
90376278 GGGTAGAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 3 0.08
26 14 0.36
27 21 0.54
28 1 0.03
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATATGACAGAGTCA
Found at i:90377757 original size:23 final size:24
Alignment explanation
Indices: 90377718--90377798 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
90377708 CCCTAACCAG
* *
90377718 CTCCTAAATCCTCTCCCTTATCAG
1 CTCCTAAATCCTATCCCTTATCAA
90377742 CTCCT-AATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
90377765 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
90377789 CTCCTAAATC
1 CTCCTAAATC
90377799 TTCTCCTGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
23 21 0.39
24 33 0.61
ACGTcount: A:0.26, C:0.40, G:0.01, T:0.33
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:90384030 original size:27 final size:27
Alignment explanation
Indices: 90383976--90384084 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
90383966 AGCATGGCTG
* *
90383976 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
90384002 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
90384029 CCAGAACAAAT-ATATGGGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
** *
90384056 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
90384083 CC
1 CC
90384085 GGGACGCTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 54 0.76
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:90384067 original size:54 final size:53
Alignment explanation
Indices: 90383976--90384084 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 53
90383966 AGCATGGCTG
* * *
90383976 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAAATAATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
* ** *
90384029 CCAGAACAAATATATGGGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAAATA-ATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
90384083 CC
1 CC
90384085 GGGACGCTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.23
54 37 0.77
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.17
Consensus pattern (53 bp):
CCAGAACAAATAATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:90384521 original size:16 final size:15
Alignment explanation
Indices: 90384500--90384532 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
90384490 CTTAAAATGC
90384500 TGGCTTTTCGGCATTT
1 TGGCTTTTCGGC-TTT
90384516 TGGCTTTTCGGCTTT
1 TGGCTTTTCGGCTTT
90384531 TG
1 TG
90384533 CCGATCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.03, C:0.18, G:0.27, T:0.52
Consensus pattern (15 bp):
TGGCTTTTCGGCTTT
Found at i:90385529 original size:24 final size:24
Alignment explanation
Indices: 90385494--90385593 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
90385484 CCAACACTGT
*
90385494 TCTCCCTAATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
90385518 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
90385542 TAT-CCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
90385565 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
90385589 TCTCC
1 TCTCC
90385594 TGACAGATTT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
23 22 0.31
24 48 0.69
ACGTcount: A:0.26, C:0.40, G:0.01, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:90385556 original size:47 final size:47
Alignment explanation
Indices: 90385502--90385594 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
90385492 GTTCTCCCTA
* *
90385502 ATCAACTCCTAAATCCTCTCCCTTATCAGCTCCTAAATCCTATCCTT
1 ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCTATCCTT
*
90385549 ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCTCTCCT
1 ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCTATCCT
90385595 GACAGATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.27, C:0.39, G:0.01, T:0.33
Consensus pattern (47 bp):
ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCTATCCTT
Found at i:90387268 original size:27 final size:28
Alignment explanation
Indices: 90387212--90387281 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
90387202 AAATTTGTAC
90387212 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
90387240 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
90387267 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
90387282 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:90395175 original size:27 final size:28
Alignment explanation
Indices: 90395119--90395188 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
90395109 AAATTTGTAC
90395119 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
90395147 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
90395174 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
90395189 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:90396825 original size:29 final size:29
Alignment explanation
Indices: 90396792--90396856 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
90396782 GTGACGAGAT
*
90396792 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
90396821 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
90396850 CGGCACT
1 TGGCACT
90396857 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:90403976 original size:2 final size:2
Alignment explanation
Indices: 90403969--90403997 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
90403959 GTGCTCAAAC
90403969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90403998 ATCCTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90405674 original size:21 final size:21
Alignment explanation
Indices: 90405648--90405688 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
90405638 AAACACCAAA
* *
90405648 CCCTAAATCCTAGATCATAAG
1 CCCTAAATCATAGATAATAAG
90405669 CCCTAAATCATAGATAATAA
1 CCCTAAATCATAGATAATAA
90405689 ACCTACACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.24
Consensus pattern (21 bp):
CCCTAAATCATAGATAATAAG
Found at i:90406109 original size:21 final size:21
Alignment explanation
Indices: 90406085--90406141 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 21
90406075 CCGTATCCCT
*
90406085 ATAAACTCTAAATCATAAAA-C
1 ATAAAC-CTAAACCATAAAACC
*
90406106 ATAAAACATAAACCATAAAACC
1 AT-AAACCTAAACCATAAAACC
90406128 ATAAACCCTAAACC
1 ATAAA-CCTAAACC
90406142 CCTGACCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.58, C:0.25, G:0.00, T:0.18
Consensus pattern (21 bp):
ATAAACCTAAACCATAAAACC
Found at i:90406133 original size:7 final size:7
Alignment explanation
Indices: 90406093--90406141 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
90406083 CTATAAACTC
*
90406093 TAAATCA
1 TAAACCA
*
90406100 TAAAACA
1 TAAACCA
*
90406107 TAAAACA
1 TAAACCA
90406114 TAAACCA
1 TAAACCA
90406121 TAAAACCA
1 T-AAACCA
*
90406129 TAAACCC
1 TAAACCA
90406136 TAAACC
1 TAAACC
90406142 CCTGACCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
7 31 0.82
8 7 0.18
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCA
Found at i:90406288 original size:14 final size:14
Alignment explanation
Indices: 90406244--90406288 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
90406234 TCTTAAAGCT
*
90406244 TAAACCATAAACCA
1 TAAACCCTAAACCA
* *
90406258 TACACCCTATACCA
1 TAAACCCTAAACCA
*
90406272 TAAACCCTAAACTA
1 TAAACCCTAAACCA
90406286 TAA
1 TAA
90406289 TGATAACTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:90406817 original size:39 final size:38
Alignment explanation
Indices: 90406741--90406827 Score: 93
Period size: 38 Copynumber: 2.2 Consensus size: 38
90406731 AACTTATAGT
**
90406741 GGCGTTTTTTAAAAAGCACCGCTAATGCTTGTTTTTAGC
1 GGCG-TTTTTAAAAAGCACCGCTAATGCTCATTTTTAGC
* * * *
90406780 GGCGTTTTTAAGAAGCGCTGCTAATGCTCATTCTTTAGT
1 GGCGTTTTTAAAAAGCACCGCTAATGCTCATT-TTTAGC
*
90406819 GGAGTTTTT
1 GGCGTTTTT
90406828 CATACAAACG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 23 0.57
39 17 0.43
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (38 bp):
GGCGTTTTTAAAAAGCACCGCTAATGCTCATTTTTAGC
Found at i:90407659 original size:39 final size:39
Alignment explanation
Indices: 90407608--90407821 Score: 284
Period size: 39 Copynumber: 5.4 Consensus size: 39
90407598 ATTACACATA
* * * ***
90407608 AATCACCTAACATACAAGCATATATCACAATGCTCAAAT
1 AATCACATAACATTCAAGCATATATCACAATACTTGTAT
*
90407647 AATCACATAACATTTAAGCATATATCACAATACTTGTAT
1 AATCACATAACATTCAAGCATATATCACAATACTTGTAT
* * *
90407686 AATCTCATAACATTCAAGCATATATTACAATACTCGTAT
1 AATCACATAACATTCAAGCATATATCACAATACTTGTAT
*
90407725 AATCACATAACATTAAAGCATATATTATCACAATACTTGTAT
1 AATCACATAACATTCAAGC--ATA-TATCACAATACTTGTAT
* *
90407767 AATCTCATAACATTCAAGCATATATTACAATACTTGTAT
1 AATCACATAACATTCAAGCATATATCACAATACTTGTAT
90407806 AATCACATAACATTCA
1 AATCACATAACATTCA
90407822 TAATTTAAGA
Statistics
Matches: 153, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 115 0.75
40 3 0.02
41 3 0.02
42 32 0.21
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (39 bp):
AATCACATAACATTCAAGCATATATCACAATACTTGTAT
Found at i:90407788 original size:81 final size:78
Alignment explanation
Indices: 90407615--90407819 Score: 320
Period size: 81 Copynumber: 2.6 Consensus size: 78
90407605 ATAAATCACC
* * * ** *
90407615 TAACATACAAGCATATATCACAATGCTCAAATAATCACATAACATTTAAGCATATATCACAATAC
1 TAACATTCAAGCATATATTACAATACTCGTATAATCACATAACATTAAAGCATATATCACAATAC
90407680 TTGTATAATCTCA
66 TTGTATAATCTCA
90407693 TAACATTCAAGCATATATTACAATACTCGTATAATCACATAACATTAAAGCATATATTATCACAA
1 TAACATTCAAGCATATATTACAATACTCGTATAATCACATAACATTAAAGC--ATA-TATCACAA
90407758 TACTTGTATAATCTCA
63 TACTTGTATAATCTCA
*
90407774 TAACATTCAAGCATATATTACAATACTTGTATAATCACATAACATT
1 TAACATTCAAGCATATATTACAATACTCGTATAATCACATAACATT
90407820 CATAATTTAA
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
78 45 0.38
80 3 0.03
81 69 0.59
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (78 bp):
TAACATTCAAGCATATATTACAATACTCGTATAATCACATAACATTAAAGCATATATCACAATAC
TTGTATAATCTCA
Found at i:90427576 original size:16 final size:16
Alignment explanation
Indices: 90427550--90427587 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
90427540 TTTAGTCTTG
*
90427550 AATATAATATATTTTTT
1 AATA-AATATAATTTTT
90427567 AATAAATATAATTTTT
1 AATAAATATAATTTTT
90427583 AATAA
1 AATAA
90427588 TAAAAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATAAATATAATTTTT
Found at i:90432045 original size:13 final size:12
Alignment explanation
Indices: 90432010--90432048 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
90432000 CCCACCCTAC
90432010 AATCATATACAG
1 AATCATATACAG
*
90432022 AAT-AGATACAG
1 AATCATATACAG
90432033 AATACATATACAG
1 AAT-CATATACAG
90432046 AAT
1 AAT
90432049 TAACATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 10 0.43
12 3 0.13
13 10 0.43
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.23
Consensus pattern (12 bp):
AATCATATACAG
Found at i:90438487 original size:13 final size:14
Alignment explanation
Indices: 90438464--90438492 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
90438454 CAATCCATAC
90438464 AACATTTATGCCAT
1 AACATTTATGCCAT
90438478 AACA-TTATGCCAT
1 AACATTTATGCCAT
90438491 AA
1 AA
90438493 ACTCAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (14 bp):
AACATTTATGCCAT
Found at i:90440393 original size:42 final size:43
Alignment explanation
Indices: 90440310--90440393 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
90440300 TCCCAGATGT
* *
90440310 GGTCTTACATGTAATCAAACATCGATGCCACTGTCCTAGACAG
1 GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAGACAG
* *
90440353 GGTCTTACATGAAATCAGATAT-GATGCCGA-TGTCCCAGACA
1 GGTCTTACATGAAATCAAACATCGATGCC-ACTGTCCCAGACA
90440394 TTTTCTTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 16 0.44
43 20 0.56
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAGACAG
Found at i:90444419 original size:54 final size:54
Alignment explanation
Indices: 90444337--90444444 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
90444327 GAATAGTGTA
90444337 AGCTCTAGTTGGTGCTCTAGCTTCGGATCTCACAGCTGAATCCCTAGTCACACC
1 AGCTCTAGTTGGTGCTCTAGCTTCGGATCTCACAGCTGAATCCCTAGTCACACC
90444391 AGCTCTAGTTGGTGCTCTAGCTTCGGATCTCACAGCTGAATCCCTAGTCACACC
1 AGCTCTAGTTGGTGCTCTAGCTTCGGATCTCACAGCTGAATCCCTAGTCACACC
90444445 TCTACCACTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.28
Consensus pattern (54 bp):
AGCTCTAGTTGGTGCTCTAGCTTCGGATCTCACAGCTGAATCCCTAGTCACACC
Found at i:90448315 original size:29 final size:28
Alignment explanation
Indices: 90448268--90448323 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
90448258 CCTAAGTACT
*
90448268 GATATCATGGCTCGAAGCCAAATCAGTG
1 GATATCATGGCCCGAAGCCAAATCAGTG
*
90448296 GATATGCATGGCCCGGAGCCAAATCAGT
1 GATAT-CATGGCCCGAAGCCAAATCAGT
90448324 ATAACTCGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (28 bp):
GATATCATGGCCCGAAGCCAAATCAGTG
Found at i:90456768 original size:28 final size:27
Alignment explanation
Indices: 90456705--90456774 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
90456695 ATAGTGAGTC
90456705 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
90456732 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
90456760 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90456775 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:90477342 original size:45 final size:45
Alignment explanation
Indices: 90477277--90477363 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
90477267 CCAAAACATG
* *
90477277 TGTCACATATATCATAAACTCAAACCATAACTCAATGAGTTCGGT
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCGGT
* *
90477322 TGTCACATATATCACGAACTCATACCACAACTCAATGAGTTC
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTC
90477364 AGATTAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCGGT
Found at i:90479334 original size:29 final size:27
Alignment explanation
Indices: 90479300--90479402 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
90479290 TACTCAATCA
*
90479300 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
90479329 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
90479358 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
90479387 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
90479403 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:90488193 original size:80 final size:80
Alignment explanation
Indices: 90488056--90488247 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 80
90488046 AATTAAATGA
* * ** * * *
90488056 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATTCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
90488121 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
90488134 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
90488199 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
90488216 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
90488248 TGTGATTATA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 93 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:90488240 original size:40 final size:39
Alignment explanation
Indices: 90488055--90488262 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
90488045 CAATTAAATG
* * * *
90488055 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * * * * * *
90488095 AAATTCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
* *
90488135 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
90488175 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * *
90488215 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
90488255 ATATCCGG
1 ATATCCGG
90488263 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 137 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:90489703 original size:14 final size:13
Alignment explanation
Indices: 90489683--90489714 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
90489673 AATATTTAAC
90489683 TTGTTCTTAATTA
1 TTGTTCTTAATTA
90489696 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
90489710 TTGTT
1 TTGTT
90489715 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:90491091 original size:12 final size:12
Alignment explanation
Indices: 90491074--90491098 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90491064 AATATGGACA
90491074 ATTTTGTCTTTT
1 ATTTTGTCTTTT
90491086 ATTTTGTCTTTT
1 ATTTTGTCTTTT
90491098 A
1 A
90491099 GCCTATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.72
Consensus pattern (12 bp):
ATTTTGTCTTTT
Found at i:90497904 original size:48 final size:48
Alignment explanation
Indices: 90497833--90497938 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
90497823 CAAGATAAAT
* * *
90497833 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90497881 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90497929 ATGTGTATAT
1 ATATGTATAT
90497939 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:90498122 original size:37 final size:37
Alignment explanation
Indices: 90498072--90498143 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
90498062 GAAATATATT
*
90498072 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
90498109 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
90498144 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:90499961 original size:41 final size:43
Alignment explanation
Indices: 90499833--90499966 Score: 218
Period size: 43 Copynumber: 3.2 Consensus size: 43
90499823 GCATGAAACT
*
90499833 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
90499876 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
90499919 C-GTGATATGTATTC-GGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
90499960 CGGTGAT
1 CGGTGAT
90499967 TCGAGCAAGG
Statistics
Matches: 86, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
41 25 0.29
42 18 0.21
43 43 0.50
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.31
Consensus pattern (43 bp):
CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:90500184 original size:29 final size:28
Alignment explanation
Indices: 90500146--90500228 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
90500136 AAATTCCGTT
90500146 AACCGAGCACTATGTGTGCGAGATCAGT-
1 AACCGAGCACTATGTGTGCGAGATC-GTC
** * * * *
90500174 AATTGAGGCACTGTGTGTGTGAGTTCTTC
1 AACCGA-GCACTATGTGTGCGAGATCGTC
90500203 AACCGAGCACTATGTGTGCGAGATCG
1 AACCGAGCACTATGTGTGCGAGATCG
90500229 GTCAGTGGGC
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (28 bp):
AACCGAGCACTATGTGTGCGAGATCGTC
Found at i:90503697 original size:47 final size:48
Alignment explanation
Indices: 90503615--90503719 Score: 167
Period size: 47 Copynumber: 2.2 Consensus size: 48
90503605 CAAGATAAAT
* * *
90503615 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90503663 ATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90503710 ATGTGTATAT
1 ATATGTATAT
90503720 ATTGTGGCCG
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 36 0.68
48 17 0.32
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:90503742 original size:47 final size:46
Alignment explanation
Indices: 90503646--90503746 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 46
90503636 GAATGGCTAG
* * *
90503646 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATATGGT-AAGCGAATGCCAAA
* * *
90503693 TGTGAAATATGTATGAGATGTGTATATATTGT-GGCCGAATGACCAAA
1 TGTGAAATATGTATGAGATATGTATATATGGTAAG-CGAATG-CCAAA
90503740 TGTGAAA
1 TGTGAAA
90503747 GGTGTGTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.02
46 6 0.13
47 39 0.85
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (46 bp):
TGTGAAATATGTATGAGATATGTATATATGGTAAGCGAATGCCAAA
Found at i:90503903 original size:37 final size:37
Alignment explanation
Indices: 90503853--90503924 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
90503843 GAAATATATT
*
90503853 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
90503890 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
90503925 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:90509226 original size:15 final size:17
Alignment explanation
Indices: 90509196--90509227 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
90509186 TTGATACTTG
90509196 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
90509213 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
90509228 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:90523435 original size:35 final size:35
Alignment explanation
Indices: 90523396--90523470 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
90523386 TATAATAACA
90523396 GCTTTCAGTCGAGTATCAAAATGGCACCTTATGAG
1 GCTTTCAGTCGAGTATCAAAATGGCACCTTATGAG
90523431 GCTTTCAGTCGAGTATCAAAATGGCACCTTATGAG
1 GCTTTCAGTCGAGTATCAAAATGGCACCTTATGAG
90523466 GCTTT
1 GCTTT
90523471 GTATGGTCGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (35 bp):
GCTTTCAGTCGAGTATCAAAATGGCACCTTATGAG
Found at i:90528025 original size:28 final size:28
Alignment explanation
Indices: 90527994--90528074 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 28
90527984 GCCCAATCTT
** *
90527994 ATTCATATGGCCCATTGGGCCCAATTAC
1 ATTCATATGGCCCATCAGGCCCAATAAC
90528022 ATTCATATGGCCCATCAGGCCCAATAAC
1 ATTCATATGGCCCATCAGGCCCAATAAC
* *
90528050 TTTCATATGGCCCGTCAGGCCCAAT
1 ATTCATATGGCCCATCAGGCCCAAT
90528075 CTGTAGCACG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (28 bp):
ATTCATATGGCCCATCAGGCCCAATAAC
Found at i:90531082 original size:40 final size:40
Alignment explanation
Indices: 90531023--90531230 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
90531013 CATTTGAATG
* * * *
90531023 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
90531063 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
90531103 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
90531143 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
90531183 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
90531223 ATATCCGG
1 ATATCCGG
90531231 TCGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:90531161 original size:80 final size:80
Alignment explanation
Indices: 90531024--90531230 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
90531014 ATTTGAATGA
* * ** * * *
90531024 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CA
*
90531089 -TTGTGCTAGT-G-AC
65 TTTGTGCAAGTCGTAC
* * *
90531102 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
90531167 ATTTGTGCAAGTCGTTC
64 ATTTGTGCAAGTCGTAC
* *
90531184 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
90531231 TCGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 103 0.94
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGTAC
Found at i:90533974 original size:26 final size:26
Alignment explanation
Indices: 90533944--90534051 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
90533934 TGAAATTCCC
90533944 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
90533970 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
90533996 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
90534022 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
90534048 ATCA
1 ATCA
90534052 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:90534563 original size:16 final size:16
Alignment explanation
Indices: 90534542--90534575 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
90534532 CCAAACTTCT
90534542 GGCTTTTCGGTATTTC
1 GGCTTTTCGGTATTTC
90534558 GGCTTTTCGGTATTTC
1 GGCTTTTCGGTATTTC
90534574 GG
1 GG
90534576 GATTTGTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.18, G:0.29, T:0.47
Consensus pattern (16 bp):
GGCTTTTCGGTATTTC
Found at i:90538906 original size:28 final size:28
Alignment explanation
Indices: 90538857--90538959 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
90538847 TGGCCCCTTT
* *
90538857 AGGCCCAATCTCATTCAAATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
90538885 GGGCCCAATCACACTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
90538913 AGACCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
90538941 AGGCTCAATCACATTCATA
1 AGGCCCAATCACATTCATA
90538960 GTCATGCAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:90545809 original size:26 final size:25
Alignment explanation
Indices: 90545769--90545844 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 25
90545759 TCTGATATGT
*
90545769 TATACGTTCTGAAAATATGAAAATGA
1 TATATGTTCT-AAAATATGAAAATGA
90545795 TATATGTTCTCAAAATATGAAAATGA
1 TATATGTTCT-AAAATATGAAAATGA
*
90545821 TATATGTTCTAGATATATGAAAAT
1 TATATGTTCTA-AAATATGAAAAT
90545845 TTTGATATGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (25 bp):
TATATGTTCTAAAATATGAAAATGA
Found at i:90546061 original size:19 final size:20
Alignment explanation
Indices: 90546037--90546081 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
90546027 AATTACGGAC
* *
90546037 TTTTGG-ACTTTTAATTTTG
1 TTTTGGAACTTTCAATTTTA
*
90546056 TTTTGGAACTTTCATTTTTA
1 TTTTGGAACTTTCAATTTTA
90546076 TTTTGG
1 TTTTGG
90546082 TATTTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.16, C:0.07, G:0.16, T:0.62
Consensus pattern (20 bp):
TTTTGGAACTTTCAATTTTA
Found at i:90548743 original size:15 final size:15
Alignment explanation
Indices: 90548710--90548743 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
90548700 TTGCTCAAAG
*
90548710 AATAACTATGTCCAT
1 AATAACTATGTCCAA
*
90548725 AATAACTATGTTCAA
1 AATAACTATGTCCAA
90548740 AATA
1 AATA
90548744 GGGCTTTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (15 bp):
AATAACTATGTCCAA
Found at i:90552715 original size:40 final size:40
Alignment explanation
Indices: 90552658--90552803 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
90552648 TCGAATGATG
*
90552658 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAA
* * * *
90552698 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTGACTAAA
* *
90552738 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTA-AA
* * *
90552779 -CCGGGCTATGTCCAGAATGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90552804 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:90552810 original size:80 final size:80
Alignment explanation
Indices: 90552658--90552826 Score: 177
Period size: 80 Copynumber: 2.1 Consensus size: 80
90552648 TCGAATGATG
* *
90552658 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTG
**
90552723 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
90552738 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTATAACCGGGCTATG-TCCAGAATGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAACCGGACTAAGATCC-GAAGGCA
* *
90552800 TTTGAACGAGTAGCTATA
63 TTGGAACGAGTAGCTAAA
90552818 TCC-GGTTAA
1 TCCGGGTTAA
90552827 ACTCCGAAGG
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
79 11 0.15
80 56 0.75
81 8 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTG
GAACGAGTAGCTAAA
Found at i:90554311 original size:19 final size:20
Alignment explanation
Indices: 90554275--90554320 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
90554265 CGAAAAATCA
90554275 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
*
90554295 TTTCTGG-AAATGGTTTACT
1 TTTCTGGAAAATGATTTACT
90554314 TTTCTGG
1 TTTCTGG
90554321 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Done.