Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 299 of 378
Found at i:90556965 original size:48 final size:49
Alignment explanation
Indices: 90556907--90557006 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 49
90556897 TATTGGTTGA
* * *
90556907 CTGTTACTGAATAATAATGATCAATTGATCGCTACTG-AAAAATATTGG
1 CTGTTACTGAATAATAATGATAAATTGATCGATACTGAAAAAAAATTGG
* * * *
90556955 CTGTTACTGAATGATATTGATAAATTGATTGATATTGAAAAAAAATTGG
1 CTGTTACTGAATAATAATGATAAATTGATCGATACTGAAAAAAAATTGG
90557004 CTG
1 CTG
90557007 ATATTGAGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
48 31 0.70
49 13 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (49 bp):
CTGTTACTGAATAATAATGATAAATTGATCGATACTGAAAAAAAATTGG
Found at i:90559575 original size:40 final size:40
Alignment explanation
Indices: 90559530--90559697 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
90559520 CGGAATATAA
90559530 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
90559570 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
90559610 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
90559650 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
90559690 CCGGATAT
1 CCGGATAT
90559698 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:90564976 original size:29 final size:27
Alignment explanation
Indices: 90564943--90565004 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
90564933 AATCCTCCAT
90564943 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* *
90564970 AACACACCGGTATATCATATCCTCCCA
1 AACACACCAGTATATCATAGCCTCCCA
90564997 AACACACC
1 AACACACC
90565005 CTTAAGGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.39, C:0.37, G:0.06, T:0.18
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:90566403 original size:6 final size:6
Alignment explanation
Indices: 90566392--90566462 Score: 97
Period size: 6 Copynumber: 11.7 Consensus size: 6
90566382 TTTTAAATCA
* *
90566392 AATAAT AATAAT AATATT AATATT AATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
* *
90566440 AATATT AACAAT AATAATT AATA
1 AATATT AATATT AAT-ATT AATA
90566463 AAATCTAAGA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
6 54 0.92
7 5 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (6 bp):
AATATT
Found at i:90567438 original size:19 final size:22
Alignment explanation
Indices: 90567399--90567438 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
90567389 AGAAACCCAA
90567399 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
90567421 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
90567439 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:90567537 original size:27 final size:26
Alignment explanation
Indices: 90567499--90567613 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
90567489 CAGCATGGCT
* *
90567499 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
90567525 ACCAGATACAGATAATCGTGGC-GAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
90567552 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * * *
90567579 ATCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
90567606 ACCAGAAC
1 ACCAGAAC
90567614 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 18 0.23
27 55 0.71
28 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:90567557 original size:53 final size:54
Alignment explanation
Indices: 90567499--90567613 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
90567489 CAGCATGGCT
*
90567499 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGC-GAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * * * *
90567552 ACCAGAACAGATATATGTGGCAGAGCCATCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
90567606 ACCAGAAC
1 ACCAGAAC
90567614 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
53 25 0.46
54 29 0.54
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:90569265 original size:26 final size:26
Alignment explanation
Indices: 90569230--90569339 Score: 161
Period size: 26 Copynumber: 4.2 Consensus size: 26
90569220 CATGAAATTC
*
90569230 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
90569256 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
90569282 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
*
90569308 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
90569334 TTATCA
1 TTATCA
90569340 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
25 1 0.01
26 77 0.97
27 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:90569699 original size:19 final size:18
Alignment explanation
Indices: 90569675--90569722 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 18
90569665 AGTCCTTTTT
*
90569675 ACTAATTACTCTAAATTAA
1 ACTAATTAC-CTAAATAAA
90569694 ACTAATTTCACCTAAATAAA
1 ACTAA-TT-ACCTAAATAAA
90569714 ACCTAATTA
1 A-CTAATTA
90569723 GACATATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 6 0.24
20 13 0.52
21 6 0.24
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (18 bp):
ACTAATTACCTAAATAAA
Found at i:90575693 original size:27 final size:27
Alignment explanation
Indices: 90575629--90575724 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 27
90575619 GAATATCCAA
*
90575629 CCCAAACACACCAAGAATAATATAAATCCT
1 CCCAAACACACC-AGTATAATAT--ATCCT
*
90575659 -CCATAACACACCAGTATAATATAGCCT
1 CCCA-AACACACCAGTATAATATATCCT
*
90575686 CCCAAACACACCGGTAT-ATCATATCCT
1 CCCAAACACACCAGTATAAT-ATATCCT
*
90575713 TCCAAACACACC
1 CCCAAACACACC
90575725 CATAAGGCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 33 0.57
28 3 0.05
29 12 0.21
30 8 0.14
ACGTcount: A:0.42, C:0.34, G:0.05, T:0.19
Consensus pattern (27 bp):
CCCAAACACACCAGTATAATATATCCT
Found at i:90577128 original size:3 final size:3
Alignment explanation
Indices: 90577120--90577155 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
90577110 TTTTAAATCA
90577120 AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA
90577156 AATCTAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:90577845 original size:22 final size:22
Alignment explanation
Indices: 90577820--90577862 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
90577810 AGTAAAAGTA
90577820 TTATGGTGAAGTTATAATATTG
1 TTATGGTGAAGTTATAATATTG
90577842 TTATGGTGAAGTTATAATATT
1 TTATGGTGAAGTTATAATATT
90577863 AAGAAGGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (22 bp):
TTATGGTGAAGTTATAATATTG
Found at i:90579560 original size:39 final size:39
Alignment explanation
Indices: 90579493--90579789 Score: 415
Period size: 39 Copynumber: 7.7 Consensus size: 39
90579483 ACAAAGCATG
* * * * *
90579493 CGGGACTTTAAGCCCAGATATAATACCAGCA-AAAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
90579533 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
90579573 CGGGGCTTAGCCCGGATATAACACCAGTACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
90579612 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
90579651 CGGGACTTAGCCCAGATATAACACCAGCACGAATG-CTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
90579689 C-GGACTTAGCCC-GATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
***
90579726 C-GGACTTAGCCCGGATATAACACCAATGCGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
90579764 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
90579790 TTATAAAGTC
Statistics
Matches: 238, Mismatches: 15, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
36 20 0.08
37 26 0.11
38 26 0.11
39 146 0.61
40 20 0.08
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:90579895 original size:28 final size:28
Alignment explanation
Indices: 90579862--90579943 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
90579852 ATTTAATCAT
* *
90579862 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
90579890 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
90579918 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
90579944 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:90585640 original size:27 final size:27
Alignment explanation
Indices: 90585604--90585661 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
90585594 ACTAGAATAC
*
90585604 CCCTATGTATGCAAAATTACCATTATA
1 CCCTATGTATGCAAAATGACCATTATA
*
90585631 CCCTATGTATGCAAAATGACCTTTATA
1 CCCTATGTATGCAAAATGACCATTATA
90585658 CCCT
1 CCCT
90585662 TAGGGTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (27 bp):
CCCTATGTATGCAAAATGACCATTATA
Found at i:90585857 original size:29 final size:28
Alignment explanation
Indices: 90585769--90585859 Score: 116
Period size: 28 Copynumber: 3.2 Consensus size: 28
90585759 AGGAAGCGTC
90585769 CTGGTGGCTA-TGCCAC-AAATAATCTGTT
1 CTGGTGGC-ACTGCCACAAAAT-ATCTGTT
*
90585797 CTGGTGGC-CTTGCCACAAATTATCTGTT
1 CTGGTGGCAC-TGCCACAAAATATCTGTT
90585825 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
90585854 CTGGTG
1 CTGGTG
90585860 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
28 45 0.80
29 11 0.20
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:90586342 original size:19 final size:19
Alignment explanation
Indices: 90586308--90586348 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
90586298 GGCCTTTTAA
* *
90586308 TTATTTTTATGGTTTTGTT
1 TTATTTTTATGATTTTATT
*
90586327 TTATTTTTATTATTTTATT
1 TTATTTTTATGATTTTATT
90586346 TTA
1 TTA
90586349 CTATAATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (19 bp):
TTATTTTTATGATTTTATT
Found at i:90589026 original size:37 final size:39
Alignment explanation
Indices: 90588967--90589221 Score: 398
Period size: 37 Copynumber: 6.7 Consensus size: 39
90588957 ACAAAGCATG
* * *
90588967 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
90589007 C-GGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
90589045 CGGGGCTTAGCCC-GATATAACA-CAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
90589082 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
90589121 C-GGACTTAGCCCGGATAT-ACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
90589158 C-GGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
90589196 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
90589222 TTATAAAGTC
Statistics
Matches: 203, Mismatches: 6, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
37 85 0.42
38 63 0.31
39 54 0.27
40 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:90589088 original size:76 final size:77
Alignment explanation
Indices: 90588967--90589221 Score: 403
Period size: 76 Copynumber: 3.3 Consensus size: 77
90588957 ACAAAGCATG
* * *
90588967 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTGCGGACTTAGCCCGGATATAACACC
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTTCGGACTTAGCCCGGATATAACACC
90589031 AGCACGAATGCCTT
64 AGCACGAATGCCTT
*
90589045 CGGGGCTTAGCCC-GATATAACA-CAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC-GGACTTAGCCCGGATATAACACCA
90589108 GCACGAATGCCTT
65 GCACGAATGCCTT
*
90589121 C-GGACTTAGCCCGGATAT-ACACCAGCACGAATGCCTTCGGACTTAGCCCGGATATAACACCAA
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGACTTAGCCCGGATATAACACCAG
90589184 CACGAATGCCTT
66 CACGAATGCCTT
90589196 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
90589222 TTATAAAGTC
Statistics
Matches: 165, Mismatches: 6, Indels: 13
0.90 0.03 0.07
Matches are distributed among these distances:
74 6 0.04
75 65 0.39
76 81 0.49
77 8 0.05
78 5 0.03
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (77 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGACTTAGCCCGGATATAACACCAG
CACGAATGCCTT
Found at i:90589327 original size:28 final size:28
Alignment explanation
Indices: 90589294--90589375 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
90589284 ATTTAATCAT
* *
90589294 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
90589322 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
90589350 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
90589376 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:90595063 original size:32 final size:31
Alignment explanation
Indices: 90594983--90595070 Score: 86
Period size: 32 Copynumber: 2.8 Consensus size: 31
90594973 ATTGTCAATC
*
90594983 ATTTCAATATCCAACAAGCTTAAAACATAATA
1 ATTTCAATATCCAACAA-ATTAAAACATAATA
* ** * *
90595015 AATTCAATATGTAACAAATTCAAGACATATTA
1 ATTTCAATATCCAACAAATT-AAAACATAATA
* *
90595047 ATTTCAAAATCCAACAAACTAAAA
1 ATTTCAATATCCAACAAATTAAAA
90595071 TTTCAATATC
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
31 5 0.12
32 38 0.88
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.27
Consensus pattern (31 bp):
ATTTCAATATCCAACAAATTAAAACATAATA
Found at i:90600069 original size:305 final size:305
Alignment explanation
Indices: 90599518--90600128 Score: 1195
Period size: 305 Copynumber: 2.0 Consensus size: 305
90599508 AGAAGGAGAT
90599518 GGAAAATGTCTTACTGAAAAGAAATCGGTAAGACTTTTTCCCCAAATTGCAAGTCATTTTACCCA
1 GGAAAATGTCTTACTGAAAAGAAATCGGTAAGACTTTTTCCCCAAATTGCAAGTCATTTTACCCA
90599583 TGTCTTGGAAAACATTTTCCAAATGTAAAATGTTTTCAAGCTTCCAAACACAGTAAAACCAGGAA
66 TGTCTTGGAAAACATTTTCCAAATGTAAAATGTTTTCAAGCTTCCAAACACAGTAAAACCAGGAA
*
90599648 AATATTTTTCGGAAATTGTTTTCCTGGCTTCCAAATGGACCTTAAATTCACAGCAAAACAAGGCA
131 AATATTTTTCGGAAATTGTTTTCCTGGCTTCCAAATAGACCTTAAATTCACAGCAAAACAAGGCA
90599713 TTTGACACAACCATACATATATCAATTCAAAATGCATCTACAACCTCAAAATAAAACATAAAAAA
196 TTTGACACAACCATACATATATCAATTCAAAATGCATCTACAACCTCAAAATAAAACATAAAAAA
90599778 TATTTGAATTTGTAGCTCAAAGCATCATCAATATTTCCAAACCAA
261 TATTTGAATTTGTAGCTCAAAGCATCATCAATATTTCCAAACCAA
*
90599823 GGAAAATGTCTTACTGAAAAGAAATCGGTAAGACTTTTTCCCTAAATTGCAAGTCATTTTACCCA
1 GGAAAATGTCTTACTGAAAAGAAATCGGTAAGACTTTTTCCCCAAATTGCAAGTCATTTTACCCA
90599888 TGTCTTGGAAAACATTTTCCAAATGTAAAATGTTTTCAAGCTTCCAAACACAGTAAAACCAGGAA
66 TGTCTTGGAAAACATTTTCCAAATGTAAAATGTTTTCAAGCTTCCAAACACAGTAAAACCAGGAA
*
90599953 AATATTTTTTGGAAATTGTTTTCCTGGCTTCCAAATAGACCTTAAATTCACAGCAAAACAAGGCA
131 AATATTTTTCGGAAATTGTTTTCCTGGCTTCCAAATAGACCTTAAATTCACAGCAAAACAAGGCA
90600018 TTTGACACAACCATACATATATCAATTCAAAATGCATCTACAACCTCAAAATAAAACATAAAAAA
196 TTTGACACAACCATACATATATCAATTCAAAATGCATCTACAACCTCAAAATAAAACATAAAAAA
90600083 TATTTGAATTTGTAGCTCAAAGCATCATCAATATTTCCAAACCAA
261 TATTTGAATTTGTAGCTCAAAGCATCATCAATATTTCCAAACCAA
90600128 G
1 G
90600129 ATAACCCAAT
Statistics
Matches: 303, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
305 303 1.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (305 bp):
GGAAAATGTCTTACTGAAAAGAAATCGGTAAGACTTTTTCCCCAAATTGCAAGTCATTTTACCCA
TGTCTTGGAAAACATTTTCCAAATGTAAAATGTTTTCAAGCTTCCAAACACAGTAAAACCAGGAA
AATATTTTTCGGAAATTGTTTTCCTGGCTTCCAAATAGACCTTAAATTCACAGCAAAACAAGGCA
TTTGACACAACCATACATATATCAATTCAAAATGCATCTACAACCTCAAAATAAAACATAAAAAA
TATTTGAATTTGTAGCTCAAAGCATCATCAATATTTCCAAACCAA
Found at i:90603857 original size:25 final size:26
Alignment explanation
Indices: 90603818--90603900 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
90603808 TGATACAAAT
*
90603818 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
90603844 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
90603869 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
90603895 TGATAA
1 TGATAA
90603901 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:90605414 original size:24 final size:25
Alignment explanation
Indices: 90605378--90605425 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
90605368 ACAGTTTTAC
90605378 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
90605402 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
90605426 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:90611346 original size:40 final size:40
Alignment explanation
Indices: 90611197--90611348 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
90611187 TCGAATGATG
* * ** *
90611197 TCCGGGCTAAG-TCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGATCC-GAAGGCATTTGTGC-GAGTTCCCAAA
90611237 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
*
90611277 TCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
**
90611317 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
90611349 CTATTATAAC
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.89
41 10 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:90611362 original size:40 final size:40
Alignment explanation
Indices: 90611197--90611388 Score: 160
Period size: 40 Copynumber: 4.8 Consensus size: 40
90611187 TCGAATGATG
* * *
90611197 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
90611237 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* * * *
90611277 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
90611317 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
90611358 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
90611389 TCGCTATATC
Statistics
Matches: 130, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 11 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:90614112 original size:26 final size:26
Alignment explanation
Indices: 90614075--90614159 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
90614065 TGATACAAAT
* *
90614075 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
90614101 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
90614127 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
90614153 TGATAAT
1 TGATAAT
90614160 AATTTCATGT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:90616060 original size:32 final size:34
Alignment explanation
Indices: 90615999--90616063 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 34
90615989 CTATGGGCCA
*
90615999 TATTGTTATCTGAATAAGGGGCTACGGCCCAGTT
1 TATTGTAATCTGAATAAGGGGCTACGGCCCAGTT
90616033 TATTGTAATCTGAA-AA-GGGCT-CTGGCCCAGT
1 TATTGTAATCTGAATAAGGGGCTAC-GGCCCAGT
90616064 ACCACTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 1 0.03
32 13 0.45
33 2 0.07
34 13 0.45
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (34 bp):
TATTGTAATCTGAATAAGGGGCTACGGCCCAGTT
Found at i:90618062 original size:40 final size:40
Alignment explanation
Indices: 90617911--90618062 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
90617901 TCGAATGATG
* * ** *
90617911 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
*
90617951 TCCGGACTAAGATCCGAAGGCATTTGTGCGAATTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
90617991 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
**
90618031 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
90618063 CTATTATAAC
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 91 0.91
41 8 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:90626228 original size:16 final size:17
Alignment explanation
Indices: 90626203--90626239 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
90626193 AATTTTATGG
90626203 AATTCAAAA-TTAAA-A
1 AATTCAAAATTTAAATA
90626218 AATTACAAAATTTAAATA
1 AATT-CAAAATTTAAATA
90626236 AATT
1 AATT
90626240 TAAATGTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.21
16 5 0.26
17 5 0.26
18 5 0.26
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AATTCAAAATTTAAATA
Found at i:90626708 original size:12 final size:12
Alignment explanation
Indices: 90626691--90626717 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
90626681 AAAATAAAAT
90626691 ATATTTTTTATA
1 ATATTTTTTATA
90626703 ATATTTTTTATA
1 ATATTTTTTATA
90626715 ATA
1 ATA
90626718 AAGCAGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTTTTTATA
Found at i:90627160 original size:16 final size:16
Alignment explanation
Indices: 90627141--90627171 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90627131 ACTCTTGTTC
*
90627141 AGAACAGTTGTTGCTT
1 AGAACAATTGTTGCTT
90627157 AGAACAATTGTTGCT
1 AGAACAATTGTTGCT
90627172 CGGGGAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (16 bp):
AGAACAATTGTTGCTT
Found at i:90631028 original size:20 final size:20
Alignment explanation
Indices: 90631003--90631043 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
90630993 CTTGGTGATG
90631003 ATCAATAGAAGACAATTTGA
1 ATCAATAGAAGACAATTTGA
90631023 ATCAATAGAAGACAATTTGA
1 ATCAATAGAAGACAATTTGA
90631043 A
1 A
90631044 CTTTAGCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (20 bp):
ATCAATAGAAGACAATTTGA
Found at i:90636275 original size:40 final size:40
Alignment explanation
Indices: 90636167--90636276 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
90636157 ATTGAATGAT
* * * * *
90636167 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
90636207 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
90636247 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
90636277 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:90636291 original size:40 final size:39
Alignment explanation
Indices: 90636167--90636316 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
90636157 ATTGAATGAT
* * * * * * *
90636167 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
90636207 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
90636247 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
90636287 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
90636317 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:90648577 original size:40 final size:40
Alignment explanation
Indices: 90648469--90648577 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 40
90648459 ATTGAATGAT
* * * * *
90648469 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
90648509 ATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
90648548 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
90648578 AAATTGTGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.55
40 26 0.45
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:90656619 original size:40 final size:40
Alignment explanation
Indices: 90656511--90656620 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
90656501 ATTGAATGAT
* * * * *
90656511 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
90656551 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
90656591 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
90656621 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:90656635 original size:40 final size:39
Alignment explanation
Indices: 90656511--90656660 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
90656501 ATTGAATGAT
* * * * * * *
90656511 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
90656551 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
90656591 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
90656631 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
90656661 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:90658504 original size:27 final size:26
Alignment explanation
Indices: 90658467--90658558 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 26
90658457 ATTACCAAAG
* * *
90658467 TACCCTTGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACA-AATTACCGTTT
* *
90658494 TACGCTCGATTTACAACATTACCATTT
1 TACCCTCGATTTACAA-ATTACCGTTT
90658521 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTAC-AAATTACCGTTT
90658548 TACCCTCGATT
1 TACCCTCGATT
90658559 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
26 2 0.04
27 49 0.91
28 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCGTTT
Found at i:90658628 original size:54 final size:54
Alignment explanation
Indices: 90658561--90658687 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
90658551 CCTCGATTGT
* * * *
90658561 GAAATTACTGAAATACCC-CTATAGGATAGAATTACCAAAATACCACTGGTTTGA-
1 GAAATTACAGAAATACCCTCAATAGG-TAAAATTACCAAAATACCACTGATTT-AC
* ** *
90658615 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 GAAATTACAGAAATACCCTCAATAGGTAAAATTACCAAAATACCACTGATTTAC
*
90658669 AAAATTACAGAAATACCCT
1 GAAATTACAGAAATACCCT
90658688 TGACTTTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 57 0.92
55 4 0.06
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (54 bp):
GAAATTACAGAAATACCCTCAATAGGTAAAATTACCAAAATACCACTGATTTAC
Found at i:90658666 original size:27 final size:26
Alignment explanation
Indices: 90658590--90658686 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
90658580 TATAGGATAG
* *
90658590 AATTACCAAAATACCACTGGTTTGAGA
1 AATTACCAAAATACCCCTGATTTGA-A
* *
90658617 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTG-AA
*
90658644 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTT-GAA
90658671 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
90658687 TTGACTTTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
26 5 0.09
27 48 0.83
28 5 0.09
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (26 bp):
AATTACCAAAATACCCCTGATTTGAA
Found at i:90659682 original size:25 final size:24
Alignment explanation
Indices: 90659648--90659717 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
90659638 AGGAAGTGCT
90659648 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTCTGCCCCAGTTTACC
*
90659672 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTACC
*
90659697 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
90659718 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTACC
Found at i:90659730 original size:24 final size:24
Alignment explanation
Indices: 90659647--90659730 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
90659637 GAGGAAGTGC
*
90659647 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTCTGCCCCAGTTTA-T
*
90659672 GAAAAGGGCTCTGCCCCAGTTTAT
1 TAAAAGGGCTCTGCCCCAGTTTAT
* *
90659696 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTCTGCCCCAGTTTAT
90659720 TAAAAGAGGCT
1 TAAAAG-GGCT
90659731 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (24 bp):
TAAAAGGGCTCTGCCCCAGTTTAT
Found at i:90659924 original size:42 final size:42
Alignment explanation
Indices: 90659865--90659956 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
90659855 TAGTCTCCCC
** *
90659865 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTGATATTG
90659907 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
90659949 AAATGGGC
1 AAATGGGC
90659957 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
Found at i:90660020 original size:31 final size:31
Alignment explanation
Indices: 90659980--90660058 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
90659970 CGTTTACAGT
90659980 AAAGGCTTCGGCCCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
* *
90660011 AAAGACTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
*
90660042 AAAGGCTTCGGTCCAGT
1 AAAGGCTTCGGCCCAGT
90660059 AACCATTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATAA
Found at i:90660081 original size:29 final size:29
Alignment explanation
Indices: 90660042--90660117 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
90660032 TGATTTATGA
*
90660042 AAAGGCTTCGGTCCAGTAACCATTAAACG
1 AAAGGCTTCGGCCCAGTAACCATTAAACG
* *
90660071 AAAGGCTTCGGCCCAATAACCGTTAAACG
1 AAAGGCTTCGGCCCAGTAACCATTAAACG
*
90660100 AAAGGCTTTGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
90660118 TATGTCAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (29 bp):
AAAGGCTTCGGCCCAGTAACCATTAAACG
Found at i:90661358 original size:55 final size:55
Alignment explanation
Indices: 90661209--90661358 Score: 180
Period size: 55 Copynumber: 2.7 Consensus size: 55
90661199 CTTATGACTC
* *
90661209 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTATAGAAACTT
* * * * * *
90661264 ATCAATGCCATGTCTTGACATGGCCTTACATGATTTCCTTGCC-T-TAGAAACCTT
1 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAA-CTT
90661318 ACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
90661359 AAACCCTAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 5 0.06
54 8 0.10
55 63 0.81
56 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (55 bp):
ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAACTT
Found at i:90664166 original size:29 final size:29
Alignment explanation
Indices: 90664107--90664209 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
90664097 GTGACGAGAT
* * * *
90664107 TGGCACTGAGTGTGCAAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
90664136 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
90664165 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
90664194 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
90664210 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:90670977 original size:20 final size:20
Alignment explanation
Indices: 90670952--90670992 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
90670942 CTTGGTGTTG
90670952 ATCAATAGAAGACAATTTGA
1 ATCAATAGAAGACAATTTGA
90670972 ATCAATAGAAGACAATTTGA
1 ATCAATAGAAGACAATTTGA
90670992 A
1 A
90670993 CTTTAGCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (20 bp):
ATCAATAGAAGACAATTTGA
Found at i:90671251 original size:2 final size:2
Alignment explanation
Indices: 90671246--90671281 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
90671236 AAAGAACAAA
90671246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90671282 CTAATAACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90684122 original size:49 final size:52
Alignment explanation
Indices: 90684066--90684222 Score: 176
Period size: 49 Copynumber: 3.0 Consensus size: 52
90684056 AGGGAGGGAA
* ***
90684066 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCA-AAAAA-AAA-G
1 GCCAAAGTGAAAACTCGCAAAGGGCGCTTTGAGACTCAAATAAAAAGAAAGG
* *
90684115 GCCAAAGTGAAAACTCGCAAAGGGCACTTTGATACTCAAATAAAAATGGAAAGG
1 GCCAAAGTGAAAACTCGCAAAGGGCGCTTTGAGACTCAAATAAAAA--GAAAGG
* *
90684169 GCCAAAGTGAAAACTTGCAAAGGGCGCTTTGAGACCCAATAATAAAAAAGAAAG
1 GCCAAAGTGAAAACTCGCAAAGGGCGCTTTGAGACTC-A-AAT-AAAAAGAAAG
90684223 AAAAAGAGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
49 34 0.38
50 5 0.06
53 3 0.03
54 34 0.38
55 6 0.07
56 3 0.03
57 5 0.06
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (52 bp):
GCCAAAGTGAAAACTCGCAAAGGGCGCTTTGAGACTCAAATAAAAAGAAAGG
Found at i:90685617 original size:180 final size:180
Alignment explanation
Indices: 90685315--90686266 Score: 1460
Period size: 180 Copynumber: 5.3 Consensus size: 180
90685305 ATTGGTAAAG
* ** *
90685315 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAATAGATCTTTGCAGATGGTGAATCTTATCTC
1 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
* * *
90685380 CATGTATCAGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAA
66 CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
*
90685445 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * *
90685495 ATTGAAGATTTTATCTCCTTGAAGTTGCAGCAGAGCAGATCTTTGCAGATGGTAAATCTTATCTC
1 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
* * *
90685560 CATGAATCAGTAATGGAGAAGATTTTACCACCAAGCCTTATCTCTCTGAAGTAGCAAGAGAGTAG
66 CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
*
90685625 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * *
90685675 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCACAGATGGTGAATCTTATCTC
1 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
90685740 CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
66 CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
90685805 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * * *
90685855 ATTGAAGATTTTATCTCCCTGAAGTTACAGCAGAGCAAATCTTCGCAGATGGTGAATCCTATCTC
1 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
*
90685920 CATGAATCAGTAATGGATCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
66 CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* * * * *
90685985 GTTTATGAATGAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGACT-AAA
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * *
90686034 ATTAAAGATCTTATCTCCCTG-AGATTGCAGCAGAGTAGATCTTCGCAGATGGTGAATCTTATTT
1 ATTGAAGATCTTATCTCCCTGAAG-TTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCT
* * * *
90686098 CCATGTATCAGGCAATAGAGTAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
65 CCATGAATCA-GTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* * * *
90686163 ATGTTTATGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAGA
129 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
* * *
90686215 ATTAAAGATCTTATCTCCCT-AAGATTGAAGCAGAGCAGATCTTCACAGATGG
1 ATTGAAGATCTTATCTCCCTGAAG-TTGCAGCAGAGCAGATCTTCGCAGATGG
90686267 CTTGTGATAA
Statistics
Matches: 714, Mismatches: 54, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
178 2 0.00
179 65 0.09
180 597 0.84
181 50 0.07
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (180 bp):
ATTGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
CATGAATCAGTAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
Found at i:90688096 original size:79 final size:82
Alignment explanation
Indices: 90687956--90688140 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
90687946 TCGAATGATG
* * *
90687956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
90688020 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
90688036 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
90688098 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
90688116 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90688141 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:90688148 original size:40 final size:40
Alignment explanation
Indices: 90687957--90688148 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
90687947 CGAATGATGT
* * * * *
90687957 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
90687997 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
90688037 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
90688076 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
90688116 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
90688149 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:90688171 original size:79 final size:79
Alignment explanation
Indices: 90687956--90688173 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
90687946 TCGAATGATG
* * * * ** *
90687956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
90688019 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
90688036 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
90688101 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
90688116 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
90688174 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:90689834 original size:174 final size:172
Alignment explanation
Indices: 90689565--90689904 Score: 407
Period size: 174 Copynumber: 2.0 Consensus size: 172
90689555 TTAAGCCTTA
* *
90689565 AGCCTCATCTCTCTGAAGTAACAAGAGAGTAGGTTGAAGGAGTCTGATCTTCCTGAGGTAGCAAG
1 AGCCTCATCTCTCTGAAGTAACAAGAGAGCAGGTTGAAGGAG-ATGATCTTCCTGAGGTAGCAAG
* * * * **
90689630 GAAGCAAATTGAGAATTGAAGATTTTATCTCCCTGAAGTCGCAGCGGAGTAGATCTTCACAGGTG
65 GAAGCAAACTGAGAATTGAAGATCTTATCTCCCCGAAGTCGCAGCGGAGCAGA--TTCA-AAATG
* *
90689695 GTGAATCTTATATCCATGTATTGGCAATGGAGCAGATTTTACGTCC
127 GTGAATCTTATATCCATGTATCGGCAATAGAGCAGATTTTACGTCC
* *
90689741 AGCCTCATCTCTCT-AAGGTAGCAAGGGAGCAGGTTGAA-GA-ATGAGTCTTCCTGAGGTAGCAA
1 AGCCTCATCTCTCTGAA-GTAACAAGAGAGCAGGTTGAAGGAGATGA-TCTTCCTGAGGTAGCAA
* ** * * * * *
90689803 GGAAGCAGACTGAGGGTTGAGGATCTTATCTCCCCGAAGTGGTAGTGGAGCAGATTGAAAATGGT
64 GGAAGCAAACTGAGAATTGAAGATCTTATCTCCCCGAAGTCGCAGCGGAGCAGATTCAAAATGGT
* *
90689868 GAATTTTATCTCCATGTATCGGCAATAGAGCAGATTT
129 GAATCTTATATCCATGTATCGGCAATAGAGCAGATTT
90689905 AATTTAATCT
Statistics
Matches: 140, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
171 38 0.27
172 3 0.02
173 3 0.02
174 60 0.43
175 4 0.03
176 32 0.23
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (172 bp):
AGCCTCATCTCTCTGAAGTAACAAGAGAGCAGGTTGAAGGAGATGATCTTCCTGAGGTAGCAAGG
AAGCAAACTGAGAATTGAAGATCTTATCTCCCCGAAGTCGCAGCGGAGCAGATTCAAAATGGTGA
ATCTTATATCCATGTATCGGCAATAGAGCAGATTTTACGTCC
Found at i:90695790 original size:16 final size:16
Alignment explanation
Indices: 90695771--90695801 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90695761 CTTCTTCACT
90695771 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
90695787 TACTTACTTACTTAA
1 TACTCACTTACTTAA
90695802 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:90695807 original size:20 final size:20
Alignment explanation
Indices: 90695768--90695807 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
90695758 AAACTTCTTC
* *
90695768 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
90695788 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
90695808 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:90696121 original size:53 final size:54
Alignment explanation
Indices: 90695993--90696247 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
90695983 ACACGGGTAC
* * ** *
90695993 CTTACCATTGCCATGACTTTTCATGGTCTTACGTGGTAT-CTT---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
90696042 CTTACCATTGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
90696095 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
90696150 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
90696203 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
90696248 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 34 0.20
50 3 0.02
52 2 0.01
53 48 0.28
54 10 0.06
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:90696192 original size:108 final size:110
Alignment explanation
Indices: 90696040--90696240 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
90696030 ATCTTTTTGA
* * *
90696040 AACTTACCATTGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
90696103 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
90696148 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
90696213 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
90696241 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:90701230 original size:33 final size:33
Alignment explanation
Indices: 90701188--90701252 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
90701178 AAGTCTGGAG
*
90701188 GCTCATTAATAACAAAGATACATTGTGTTTTAT
1 GCTCATTAATAACAAAGATACACTGTGTTTTAT
90701221 GCTCATTAATAACAAAGATACACTGTGTTTTA
1 GCTCATTAATAACAAAGATACACTGTGTTTTA
90701253 AAGTTTTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (33 bp):
GCTCATTAATAACAAAGATACACTGTGTTTTAT
Found at i:90703984 original size:42 final size:42
Alignment explanation
Indices: 90703938--90704033 Score: 131
Period size: 42 Copynumber: 2.3 Consensus size: 42
90703928 ACAATTCTAT
**
90703938 TGAGCTTCTGTAT-AACCCTTATGGGTTTCCGTTTAGCTTTTA
1 TGAGCTTCTGT-TCAACCCTTATGGGTTTCCGTTTAGCACTTA
* *
90703980 TGAGCTTCCGTTCAACCCTTATGGGTTTCTGTTTAGCACTTA
1 TGAGCTTCTGTTCAACCCTTATGGGTTTCCGTTTAGCACTTA
*
90704022 TGTGCTTCTGTT
1 TGAGCTTCTGTT
90704034 TAGTCTTCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.45
Consensus pattern (42 bp):
TGAGCTTCTGTTCAACCCTTATGGGTTTCCGTTTAGCACTTA
Found at i:90704021 original size:21 final size:21
Alignment explanation
Indices: 90703955--90704036 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 21
90703945 CTGTATAACC
* *
90703955 CTTATGGGTTTCCGTTTAGCT
1 CTTATGGGCTTCCGTTTAGCA
* * * * *
90703976 TTTATGAGCTTCCGTTCAACC
1 CTTATGGGCTTCCGTTTAGCA
* *
90703997 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGCTTCCGTTTAGCA
* *
90704018 CTTATGTGCTTCTGTTTAG
1 CTTATGGGCTTCCGTTTAG
90704037 TCTTCGGGCT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.13, C:0.20, G:0.21, T:0.46
Consensus pattern (21 bp):
CTTATGGGCTTCCGTTTAGCA
Found at i:90704570 original size:25 final size:22
Alignment explanation
Indices: 90704537--90704581 Score: 54
Period size: 25 Copynumber: 1.9 Consensus size: 22
90704527 TAAATTAAAA
90704537 TATGGATGTGAATGATATATGCTTG
1 TATGGATGT-AATG-T-TATGCTTG
*
90704562 TATGTATGTAATGTTATGCT
1 TATGGATGTAATGTTATGCT
90704582 ATGCTGAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 1 0.05
24 4 0.21
25 8 0.42
ACGTcount: A:0.27, C:0.04, G:0.24, T:0.44
Consensus pattern (22 bp):
TATGGATGTAATGTTATGCTTG
Found at i:90704904 original size:59 final size:60
Alignment explanation
Indices: 90704834--90704960 Score: 238
Period size: 60 Copynumber: 2.1 Consensus size: 60
90704824 CTAGCAAACG
90704834 GGCGTGTGGCTTGGTTGTGTGA-CCCTGTACCTTAATTTTGTAACACACGGCCTAGCACA
1 GGCGTGTGGCTTGGTTGTGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACA
90704893 GGCGTGTGGCTTGGTTGTGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACA
1 GGCGTGTGGCTTGGTTGTGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACA
*
90704953 GGCATGTG
1 GGCGTGTG
90704961 AATTGGCCAT
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
59 22 0.33
60 44 0.67
ACGTcount: A:0.18, C:0.24, G:0.28, T:0.30
Consensus pattern (60 bp):
GGCGTGTGGCTTGGTTGTGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACA
Found at i:90704974 original size:60 final size:60
Alignment explanation
Indices: 90704851--90704977 Score: 193
Period size: 60 Copynumber: 2.1 Consensus size: 60
90704841 GGCTTGGTTG
* ** ***
90704851 TGTGA-CCCTGTACCTTAATTTTGTAACACACGGCCTAGCACAGGCGTGTGGCTTGGTTG
1 TGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACAGGCATGTGAATTGGCCA
90704910 TGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACAGGCATGTGAATTGGCCA
1 TGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACAGGCATGTGAATTGGCCA
90704970 TGTGACCC
1 TGTGACCC
90704978 AAGTCAAAGA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
59 5 0.08
60 56 0.92
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.28
Consensus pattern (60 bp):
TGTGACCCCTGTACCTTAATTTTGTAACACACGGCCTAGCACAGGCATGTGAATTGGCCA
Found at i:90706629 original size:29 final size:29
Alignment explanation
Indices: 90706597--90706669 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
90706587 CTTCGAGCTC
*
90706597 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
90706626 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
90706655 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
90706670 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:90711180 original size:24 final size:24
Alignment explanation
Indices: 90711125--90711179 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
90711115 GTTAGAAATT
90711125 TTTTATTTTAATCTATTTATTTGA
1 TTTTATTTTAATCTATTTATTTGA
*
90711149 -TTTATTTTAAATTTATTT-TTT-A
1 TTTTATTTT-AATCTATTTATTTGA
90711171 TTTTATTTT
1 TTTTATTTT
90711180 TTTAGTTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 1 0.04
23 19 0.68
24 8 0.29
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTTATTTTAATCTATTTATTTGA
Found at i:90712802 original size:18 final size:19
Alignment explanation
Indices: 90712771--90712812 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
90712761 AAAATCACAA
90712771 AAAAACAAAGAAAAAAT-AT
1 AAAAAC-AAGAAAAAATCAT
*
90712790 AAAAACTA-AAAAAATCAT
1 AAAAACAAGAAAAAATCAT
90712808 AAAAA
1 AAAAA
90712813 GGGGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 8 0.38
19 6 0.29
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (19 bp):
AAAAACAAGAAAAAATCAT
Found at i:90713060 original size:9 final size:10
Alignment explanation
Indices: 90712992--90713062 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
90712982 AATTTAAATC
90712992 TTTAA-ATTT
1 TTTAATATTT
*
90713001 TCTAA-ATTT
1 TTTAATATTT
* *
90713010 GTAAATATTT
1 TTTAATATTT
90713020 TTTCAAT-TTT
1 TTT-AATATTT
*
90713030 TATGAA-ATTT
1 T-TTAATATTT
*
90713040 TTTATTATTT
1 TTTAATATTT
90713050 TTTAATATTT
1 TTTAATATTT
90713060 TTT
1 TTT
90713063 GCTGTTGACA
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
9 12 0.26
10 31 0.66
11 4 0.09
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTAATATTT
Found at i:90717117 original size:17 final size:18
Alignment explanation
Indices: 90717103--90717137 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90717093 CCATAATTTC
90717103 TATTAAAT-TATAATTAT
1 TATTAAATGTATAATTAT
*
90717120 TTTTAAATGTATAATTAT
1 TATTAAATGTATAATTAT
90717138 CACAACTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TATTAAATGTATAATTAT
Found at i:90717321 original size:3 final size:3
Alignment explanation
Indices: 90717313--90717378 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
90717303 AGGCAGATAG
90717313 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
90717361 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
90717379 TTTGATTGAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:90728708 original size:29 final size:29
Alignment explanation
Indices: 90728675--90728747 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
90728665 GTGACGAGAT
90728675 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
90728704 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
90728733 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
90728748 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:90728763 original size:29 final size:29
Alignment explanation
Indices: 90728731--90728807 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
90728721 GCTGGAAATA
* *
90728731 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
90728760 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
90728789 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
90728808 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:90728764 original size:58 final size:59
Alignment explanation
Indices: 90728675--90728807 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
90728665 GTGACGAGAT
* * *
90728675 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
90728733 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
90728791 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
90728808 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:90728845 original size:2 final size:2
Alignment explanation
Indices: 90728840--90728876 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
90728830 GTACGTACTC
90728840 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
90728877 CTCCGATCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:90733790 original size:68 final size:68
Alignment explanation
Indices: 90733640--90733797 Score: 158
Period size: 68 Copynumber: 2.3 Consensus size: 68
90733630 CTAGACAATT
** * * *
90733640 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGCATACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
90733705 TTTA
65 CATA
* * *
90733709 TCTCTCCCGTAGCTCTCTTGTCTACATGGCATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TATCT--CGTAGCTCTCTTGTCTACATGGCATACATCACTCGAATCACACATGCGACCTAGCTAC
90733772 TACATA
64 -ACATA
*
90733778 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
90733798 ACACATGATG
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
68 35 0.48
69 7 0.10
70 5 0.07
71 26 0.36
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGCATACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:90747454 original size:13 final size:13
Alignment explanation
Indices: 90747436--90747468 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
90747426 GGTTGTTTAT
90747436 TAAACTAATTAAC
1 TAAACTAATTAAC
90747449 TAAACTAATTAAC
1 TAAACTAATTAAC
90747462 T-AACTAA
1 TAAACTAA
90747469 ACTAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:90755460 original size:21 final size:21
Alignment explanation
Indices: 90755435--90755506 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
90755425 GTTGAAAAGA
* *
90755435 AAGTTGCTACTGTAGAAGAAG
1 AAGTTGCTGCTGAAGAAGAAG
* ** *
90755456 AAGTTGTTGCCAAAGAAGAGG
1 AAGTTGCTGCTGAAGAAGAAG
*
90755477 AAGTTGTTGCTGAAGAAGAAG
1 AAGTTGCTGCTGAAGAAGAAG
90755498 AAGTTGCTG
1 AAGTTGCTG
90755507 AAAATAAGAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (21 bp):
AAGTTGCTGCTGAAGAAGAAG
Found at i:90755980 original size:16 final size:16
Alignment explanation
Indices: 90755961--90755993 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
90755951 GATAAGTATA
90755961 TATTGTCATTACATTT
1 TATTGTCATTACATTT
90755977 TATTGTCATTACATTT
1 TATTGTCATTACATTT
90755993 T
1 T
90755994 CATGTTAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.58
Consensus pattern (16 bp):
TATTGTCATTACATTT
Found at i:90762760 original size:2 final size:2
Alignment explanation
Indices: 90762753--90762810 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
90762743 CCATTCAATC
*
90762753 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90762795 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
90762811 GCATAAATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90763495 original size:15 final size:15
Alignment explanation
Indices: 90763475--90763506 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
90763465 ACCGACCTCA
90763475 AACCATAGTCTAGCC
1 AACCATAGTCTAGCC
90763490 AACCATAGTCTAGCC
1 AACCATAGTCTAGCC
90763505 AA
1 AA
90763507 ACCAAACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.12, T:0.19
Consensus pattern (15 bp):
AACCATAGTCTAGCC
Found at i:90788182 original size:37 final size:37
Alignment explanation
Indices: 90788132--90788205 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
90788122 CTTCCCAAAG
90788132 TAAGATAAATTGTAAATTTGTAGGTTTCTCATGTTGT
1 TAAGATAAATTGTAAATTTGTAGGTTTCTCATGTTGT
90788169 TAAGATAAATTGTAAATTTGTAGGTTTCTCATGTTGT
1 TAAGATAAATTGTAAATTTGTAGGTTTCTCATGTTGT
90788206 GGCCCTCCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.05, G:0.19, T:0.46
Consensus pattern (37 bp):
TAAGATAAATTGTAAATTTGTAGGTTTCTCATGTTGT
Found at i:90789549 original size:32 final size:32
Alignment explanation
Indices: 90789508--90789573 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
90789498 ACATATTGAG
90789508 ACTCAAAATGAACAAGTATAAAGAAGAGGATC
1 ACTCAAAATGAACAAGTATAAAGAAGAGGATC
90789540 ACTCAAAATGAACAAGTATAAAGAAGAGGATC
1 ACTCAAAATGAACAAGTATAAAGAAGAGGATC
90789572 AC
1 AC
90789574 CTTATCGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.18, T:0.15
Consensus pattern (32 bp):
ACTCAAAATGAACAAGTATAAAGAAGAGGATC
Found at i:90796028 original size:18 final size:16
Alignment explanation
Indices: 90795985--90796017 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
90795975 TTATTTAATT
*
90795985 ATTAATAAATTTTTTC
1 ATTAATAATTTTTTTC
90796001 ATTAATAATTTTTTTC
1 ATTAATAATTTTTTTC
90796017 A
1 A
90796018 GTTATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTAATAATTTTTTTC
Found at i:90796364 original size:19 final size:19
Alignment explanation
Indices: 90796340--90796378 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
90796330 AAATTTCGTG
90796340 TTACCATGCCACATGAACC
1 TTACCATGCCACATGAACC
90796359 TTACCATGCCACATGAACC
1 TTACCATGCCACATGAACC
90796378 T
1 T
90796379 AAGCGTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.23
Consensus pattern (19 bp):
TTACCATGCCACATGAACC
Found at i:90816455 original size:29 final size:29
Alignment explanation
Indices: 90816422--90816480 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
90816412 AGAAAGAAGC
90816422 AATCAAAAGCAATAGAAAAATATGAAATT
1 AATCAAAAGCAATAGAAAAATATGAAATT
90816451 AATCAAAAGCAATAGAAAAATATGAAATT
1 AATCAAAAGCAATAGAAAAATATGAAATT
90816480 A
1 A
90816481 TCATACTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (29 bp):
AATCAAAAGCAATAGAAAAATATGAAATT
Found at i:90818789 original size:89 final size:89
Alignment explanation
Indices: 90818638--90818813 Score: 343
Period size: 89 Copynumber: 2.0 Consensus size: 89
90818628 ATATCATGGA
90818638 GAAAGAACAAGTAAATCCATCCCAAGTGAGTCTAAGTTTACCTTAAGGGGAGCCATACCTGAATT
1 GAAAGAACAAGTAAATCCATCCCAAGTGAGTCTAAGTTTACCTTAAGGGGAGCCATACCTGAATT
90818703 GGCTAGAAGCAAAAGTTCAAAGCT
66 GGCTAGAAGCAAAAGTTCAAAGCT
*
90818727 GAAAGAACAAGTAAATCCATCCCAAGTGAGTCTGAGTTTACCTTAAGGGGAGCCATACCTGAATT
1 GAAAGAACAAGTAAATCCATCCCAAGTGAGTCTAAGTTTACCTTAAGGGGAGCCATACCTGAATT
90818792 GGCTAGAAGCAAAAGTTCAAAG
66 GGCTAGAAGCAAAAGTTCAAAG
90818814 TAACCAAAGT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (89 bp):
GAAAGAACAAGTAAATCCATCCCAAGTGAGTCTAAGTTTACCTTAAGGGGAGCCATACCTGAATT
GGCTAGAAGCAAAAGTTCAAAGCT
Found at i:90821147 original size:42 final size:42
Alignment explanation
Indices: 90821083--90821199 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
90821073 GTTACTGAGT
* * *
90821083 TTACGTGTAAGACTATATCTGGGATATGGCATCGATATGATA
1 TTACGTGTAAGACCATATCTGGGATATGGCATCGATACGAGA
* * *
90821125 CTT-CGTGTAAGACCATAGCTGGGCTATTGGCATTGATACGAGA
1 -TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACGAGA
*
90821168 TTACATGTAAGACCATATCTGGGATATGGCAT
1 TTACGTGTAAGACCATATCTGGGATATGGCAT
90821200 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATATCTGGGATATGGCATCGATACGAGA
Found at i:90823169 original size:41 final size:41
Alignment explanation
Indices: 90823112--90823252 Score: 196
Period size: 41 Copynumber: 3.4 Consensus size: 41
90823102 ATTACGTTTG
90823112 GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATGTAAT
90823153 GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATGTAAT
* * * * * *
90823194 GCATTTTGTGTGCAAAATTATAAT-GTTTCAGCTATGCT-TT
1 GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATG-TAAT
90823234 GGCACTTAGTGTGCGAGAT
1 -GCACTTAGTGTGCGAGAT
90823253 ATCGAGTAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 12 0.14
41 76 0.86
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTATAATAGTTTCGGCTATGTAAT
Found at i:90825651 original size:13 final size:15
Alignment explanation
Indices: 90825622--90825653 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
90825612 GAGAAAGGCT
90825622 GATTCAGAGGTAAGA
1 GATTCAGAGGTAAGA
90825637 GATTC-GAGG-AAGA
1 GATTCAGAGGTAAGA
90825650 GATT
1 GATT
90825654 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.22
Consensus pattern (15 bp):
GATTCAGAGGTAAGA
Found at i:90826576 original size:26 final size:26
Alignment explanation
Indices: 90826540--90826592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
90826530 AATATGTGAG
90826540 AAAGGATTGTAAAACTTATTTTGCTT
1 AAAGGATTGTAAAACTTATTTTGCTT
*
90826566 AAAGGATTGTAAAGCTTATTTTGCTT
1 AAAGGATTGTAAAACTTATTTTGCTT
90826592 A
1 A
90826593 TGTGCTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.42
Consensus pattern (26 bp):
AAAGGATTGTAAAACTTATTTTGCTT
Found at i:90830714 original size:41 final size:41
Alignment explanation
Indices: 90830657--90830898 Score: 281
Period size: 41 Copynumber: 5.9 Consensus size: 41
90830647 ATTACATTTG
* *
90830657 GCACTTAGTGTGCGAGATCGA-GATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGAT-TATAATAGCTTCGGCTATGTAAT
* * * *
90830698 GCACTTTGTGTGCGAGATCGA-GATAGCTTCGGCTGTGTAAT
1 GCACTTAGTGTGCGAGAT-TATAATAGCTTCGGCTATGTAAT
* *
90830739 GCACTTTGTGTACGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* * *
90830780 GCGCTTAGTGTGTGAGATTATAATAGCTTCGGCTATGTAAC
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* *
90830821 GCGCTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAC
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* ** * * *
90830862 GCACTGAGTGTAAGAAATTATAATAGTTTCGACTATG
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
90830899 CTTTGGCACT
Statistics
Matches: 181, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 1 0.01
41 180 0.99
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
Found at i:90837142 original size:2 final size:2
Alignment explanation
Indices: 90837137--90837167 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
90837127 TATAATTTTA
90837137 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90837168 ATACATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90844623 original size:62 final size:61
Alignment explanation
Indices: 90844512--90844636 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 61
90844502 TTATGTTTGG
90844512 ATGTGAAATATGATTCTCAAGTTATTATTACTTCTTATATTTTACTTTTTATTGTAGAATA
1 ATGTGAAATATGATTCTCAAGTTATTATTACTTCTTATATTTTACTTTTTATTGTAGAATA
90844573 ATGTGAAATATGATTCTCAAGTTATTTATTACTTCTTATATTTTACTTTTTATTGTAGAATA
1 ATGTGAAATATGATTCTCAAGTTA-TTATTACTTCTTATATTTTACTTTTTATTGTAGAATA
90844635 AT
1 AT
90844637 CAAATTATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 24 0.38
62 39 0.62
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (61 bp):
ATGTGAAATATGATTCTCAAGTTATTATTACTTCTTATATTTTACTTTTTATTGTAGAATA
Found at i:90844818 original size:58 final size:58
Alignment explanation
Indices: 90844725--90844891 Score: 184
Period size: 58 Copynumber: 2.9 Consensus size: 58
90844715 TTTTTATACT
*
90844725 ATTATATATTATAATTTT-TT-AATTCATA--TAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTAT--TTTTATTAAATT-ATATTTAATAATAATTATATTAA-AATTTGATTAA
* * * *
90844783 ATTATATATTA-TTTTATTAAATTATATTTAGTAATAATCATGTTAAAATATGATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATTTGATTAA
* *
90844840 ATTATTTATTATTTTTATTAAATTATTTTTAATAATAATCT-TATTAAAATTT
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATTT
90844892 AATAATAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
55 4 0.04
56 5 0.05
57 23 0.25
58 60 0.65
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (58 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATTTGATTAA
Found at i:90845049 original size:19 final size:19
Alignment explanation
Indices: 90845025--90845085 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
90845015 TAATAATTTT
90845025 ATATTAAAATTATTATTAA
1 ATATTAAAATTATTATTAA
* * *
90845044 ATATTATTAA-TA-AATT-T
1 ATATTA-AAATTATTATTAA
*
90845061 ATATTAAAATTATTAATAA
1 ATATTAAAATTATTATTAA
90845080 ATATTA
1 ATATTA
90845086 TTAATAATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
16 2 0.06
17 8 0.26
18 5 0.16
19 14 0.45
20 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTAAAATTATTATTAA
Found at i:90845062 original size:36 final size:36
Alignment explanation
Indices: 90845015--90845124 Score: 145
Period size: 36 Copynumber: 3.1 Consensus size: 36
90845005 ATGTTCTTAA
*
90845015 TAATAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATAAATTTATATTAAAATTATTATTAAATATTAT
*
90845051 TAATAAATTTATATTAAAATTATTAATAAATATTAT
1 TAATAAATTTATATTAAAATTATTATTAAATATTAT
*
90845087 TAAT-AA-TTATATTAATAA-TGTTATTAAAATATATAT
1 TAATAAATTTATATTAA-AATTATTATT-AAATAT-TAT
90845123 TA
1 TA
90845125 TTTTATTAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
34 14 0.21
35 10 0.15
36 43 0.64
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
TAATAAATTTATATTAAAATTATTATTAAATATTAT
Found at i:90845121 original size:24 final size:25
Alignment explanation
Indices: 90845024--90845124 Score: 101
Period size: 24 Copynumber: 4.3 Consensus size: 25
90845014 ATAATAATTT
*
90845024 TATATTAA-AATTATTATT-AAATA
1 TATATTAATAAATATTATTAAAATA
*
90845047 T-TATTAATAAAT-TTATATTAAA-A
1 TATATTAATAAATATTAT-TAAAATA
90845070 T-TATTAATAAATATTATTAATAAT-
1 TATATTAATAAATATTATTAA-AATA
*
90845094 TATATTAAT-AATGTTATTAAAATA
1 TATATTAATAAATATTATTAAAATA
90845118 TATATTA
1 TATATTA
90845125 TTTTATTAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
22 10 0.15
23 23 0.34
24 27 0.40
25 7 0.10
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
TATATTAATAAATATTATTAAAATA
Found at i:90845203 original size:61 final size:57
Alignment explanation
Indices: 90845070--90845223 Score: 152
Period size: 61 Copynumber: 2.6 Consensus size: 57
90845060 TATATTAAAA
* * *
90845070 TTATTAATAA-ATA-TTATTAATAATTATATTAATAATGTTATTAAAATATATATTATT
1 TTATTAA-AATATATTTAATAATAATTATATTAA-AATATGATTAAAATATATATTATT
* * * *
90845127 TTATTAAATTGTATTTAATAATAATTATATTAAAATATGATTAAATTATTTATTTTTATTT
1 TTATTAAAATATATTTAATAATAATTATATTAAAATATGATTAAA--ATATA-TATTA-TT
*
90845188 TTATTAAAATATATTTAACAATAATCT-TATTAAAAT
1 TTATTAAAATATATTTAATAATAAT-TATATTAAAAT
90845224 TTAATAACAA
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
56 1 0.01
57 19 0.24
58 18 0.22
59 4 0.05
60 4 0.05
61 33 0.41
62 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.51
Consensus pattern (57 bp):
TTATTAAAATATATTTAATAATAATTATATTAAAATATGATTAAAATATATATTATT
Found at i:90845237 original size:25 final size:26
Alignment explanation
Indices: 90845188--90845238 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
90845178 ATTTTTATTT
*
90845188 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
90845214 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
90845239 ATCTACCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:90845403 original size:16 final size:16
Alignment explanation
Indices: 90845382--90845436 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
90845372 TGAATTACTG
90845382 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
90845398 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
90845414 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
90845430 ATTACAG
1 ATTACAG
90845437 TGAACCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:90856364 original size:25 final size:25
Alignment explanation
Indices: 90856335--90856386 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
90856325 AAGAATAATT
**
90856335 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
90856360 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
90856385 TG
1 TG
90856387 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:90856871 original size:24 final size:24
Alignment explanation
Indices: 90856835--90856882 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
90856825 AAAACATAAC
*
90856835 ACCTTGAGTTTCCAACGGACTAAT
1 ACCTTGAGATTCCAACGGACTAAT
90856859 ACCTTGAGATTCCAACGGACTAAT
1 ACCTTGAGATTCCAACGGACTAAT
90856883 CACAAAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (24 bp):
ACCTTGAGATTCCAACGGACTAAT
Found at i:90861499 original size:44 final size:43
Alignment explanation
Indices: 90861451--90861715 Score: 128
Period size: 44 Copynumber: 6.0 Consensus size: 43
90861441 ATAAGATTTT
*
90861451 CAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGGCTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
** * ** * * *
90861495 CAATCGCCAACCTATTCTCTTGTTACCTCA-AAGAGATAAGGCTA
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
**** ** * * * *
90861539 GTGGCTAAAATCTACTCCATTG-T-CGATACATGAAGATAAGATTCA
1 CAATCTTCAATCTGCTCC-TTGCTAC-CT-CAGGAAGATAAGACT-A
* * * * *
90861584 CCATCTTCGATCTGCT-C-TGCTACTGCTTAGGGAGATAAAATCTA
1 CAATCTTCAATCTGCTCCTTGCTAC--CTCAGGAAGATAAGA-CTA
*
90861628 CAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
* *
90861672 CCATCTTCAACCTGCTCTCTTGCTACCTCA-GAGAGATAAGACTA
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
90861716 ATGGCTAAAA
Statistics
Matches: 162, Mismatches: 43, Indels: 32
0.68 0.18 0.14
Matches are distributed among these distances:
42 3 0.02
43 11 0.07
44 115 0.71
45 26 0.16
46 1 0.01
47 6 0.04
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
CAATCTTCAATCTGCTCCTTGCTACCTCAGGAAGATAAGACTA
Found at i:90861665 original size:177 final size:177
Alignment explanation
Indices: 90861362--90862120 Score: 1006
Period size: 177 Copynumber: 4.3 Consensus size: 177
90861352 AATAGGACTG
* * * *
90861362 GTGGCTTAAATCTACTCCATT-CTCGATACATGGAGATAAAATTCGCCATCCTCGATCTGCTCCA
1 GTGGCTAAAATCTACTCCATTGC-CGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCG
* * * * *
90861426 CAACTGCTTAGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAG
65 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAG
* * * *
90861491 GCTACAATCGCCAACCTATTCTCTTGTTACCTCAAAGAGATAAGGCTA
130 ACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * *
90861539 GTGGCTAAAATCTACTCCATTGTCGATACATGAAGATAAGATTCACCATCTTCGATCTGCTCTGC
1 GTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGC
* *
90861604 TACTGCTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
66 TACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGA
* ** * *
90861669 CTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTA
131 CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * *
90861716 ATGGCTAAAATTTTCTCCATTGCCTG-TACATGGAGATAAGATTCGCCATCTTCGATCTGCTCTG
1 GTGGCTAAAATCTACTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCG
* * * *
90861780 CTATTACTTAGGGAGATAAGATCTACAATTTTCAGTCTACTTCCTTACTACCTCAGGAAGATAAG
65 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAG
*
90861845 ACTACAATCGCCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTA
130 ACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTA
* *
90861893 GTGGCTAAAATCTGCTCCATTGCCTG-TACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCG
1 GTGGCTAAAATCTACTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCG
* * * * *
90861957 CTACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTCCTTTCTTACTACCTCAGAAAGATAAG
65 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAG
** * *
90862022 ACT-CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTT
130 ACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * * * *
90862069 GAGGCTTAAATCTGCTCCATTGCCGATACATAGAGATGAGATTTGCC-TCTTC
1 GTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTC
90862121 CAATCTTCAA
Statistics
Matches: 517, Mismatches: 62, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
175 6 0.01
176 80 0.15
177 430 0.83
178 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (177 bp):
GTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGC
TACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGA
CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTA
Found at i:90862031 original size:43 final size:45
Alignment explanation
Indices: 90861970--90862064 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 45
90861960 CTGCTTAAGG
** *
90861970 AGATAAGATCTTCAATCTTCAGTCTCCTTTCTTACTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTCCTCTCTTACTACCTCAGAA
* * *
90862015 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTCCTCTCTTACTACCTCAGAA
90862058 AGATAAG
1 AGATAAG
90862065 GCTTGAGGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 35 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTCCTCTCTTACTACCTCAGAA
Found at i:90862235 original size:323 final size:323
Alignment explanation
Indices: 90861800--90862389 Score: 912
Period size: 323 Copynumber: 1.8 Consensus size: 323
90861790 GGGAGATAAG
*
90861800 ATCTACAATTTTCAGTCTACTTCCTTACTACCTCAGGAAGATAAGACTACAATCGCCAACCTACT
1 ATCTACAATCTTCAGTCTACTTCCTTACTACCTCAGGAAGATAAGACTACAATCGCCAACCTACT
* * *
90861865 CTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCTGTACATGGAGAT
66 CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTACATGGAGAT
* *
90861930 AAGATTTGCCATCTTCGATCTGCTCCGCTACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCT
131 AAGATTCGCCATCTTCGATCTGCTCCGCTACTACTTAAGGAGATAAGATCTTCAATCTTCAGTCT
* *
90861995 CCTTTCTTACTACCTCAGAAAGATAAGACT-CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
196 CCTTCCTTACAACCTCAGAAAGATAAGACTAC-ATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
90862059 GATAAGGCTTGAGGCTTAAATCTGCTCCATTGCCGATACATAGAGATGAGATTTGCCTCTTCCA
260 GATAAGGCTTGAGGCTTAAATCTGCTCCATTGCCGATACATAGAGATGAGATTTGCCTCTTCCA
* ** * * * * **
90862123 ATCTTCAATCTTCAGTCTGTTTCCTTGCTACCTTAGTAAGATAAGACTACCATCTTCAACCTACT
1 ATCTACAATCTTCAGTCTACTTCCTTACTACCTCAGGAAGATAAGACTACAATCGCCAACCTACT
* * *
90862188 CTCTTGTTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTGCGTGGAGAT
66 CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTACATGGAGAT
* * *
90862253 AAGATTCGCCATCTTCGATCTGCTCTGCTACTATTTAGGGAGATAAGATCTTCAATCTTCAGTCT
131 AAGATTCGCCATCTTCGATCTGCTCCGCTACTACTTAAGGAGATAAGATCTTCAATCTTCAGTCT
* * * *
90862318 GCTTCCTTGCAACCTCAGGAAGATAAGACTATCATCTTCAACCTGCTCTCTTGCTACCTTAGAGA
196 CCTTCCTTACAACCTCAGAAAGATAAGACTA-CATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
90862383 GATAAGG
260 GATAAGG
90862390 TCAGTGGCTA
Statistics
Matches: 238, Mismatches: 27, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
323 199 0.84
324 38 0.16
325 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (323 bp):
ATCTACAATCTTCAGTCTACTTCCTTACTACCTCAGGAAGATAAGACTACAATCGCCAACCTACT
CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTACATGGAGAT
AAGATTCGCCATCTTCGATCTGCTCCGCTACTACTTAAGGAGATAAGATCTTCAATCTTCAGTCT
CCTTCCTTACAACCTCAGAAAGATAAGACTACATCTTCAACCTGCTCTCTTGCTACCTCAGAGAG
ATAAGGCTTGAGGCTTAAATCTGCTCCATTGCCGATACATAGAGATGAGATTTGCCTCTTCCA
Found at i:90862252 original size:147 final size:147
Alignment explanation
Indices: 90861977--90862268 Score: 385
Period size: 147 Copynumber: 2.0 Consensus size: 147
90861967 AGGAGATAAG
*
90861977 ATCTTCAATCTTCAGTCTCCTTTCTTACTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
1 ATCTTCAATCTTCAGTCTCCTTTCTTACTACCTCAGAAAGATAAGACTCAATCTTCAACCTACTC
** * *
90862042 TCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCTGCTCCATTGCCGATACATAGAGATG
66 TCTTGCTACCTCAGAGAGATAAGGCTCAAGGCTAAAATCTGCTCCATTGCCGATACATAGAGATA
*
90862107 AGATTTGCC-TCTTCCA
131 AGATTCGCCATCTTCCA
* * * * *
90862123 ATCTTCAATCTTCAGTCT-GTTTCCTTGCTACCTTAGTAAGATAAGACTACCATCTTCAACCTAC
1 ATCTTCAATCTTCAGTCTCCTTT-CTTACTACCTCAGAAAGATAAGACT-CAATCTTCAACCTAC
* * * *
90862187 TCTCTTGTTACCTCAGAGAGATAAGGC-CAATGGCTAAAATCTGCTCCATTGCCTG-TGCGTGGA
64 TCTCTTGCTACCTCAGAGAGATAAGGCTCAA-GGCTAAAATCTGCTCCATTGCC-GATACATAGA
90862250 GATAAGATTCGCCATCTTC
127 GATAAGATTCGCCATCTTC
90862269 GATCTGCTCT
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
145 3 0.02
146 41 0.33
147 76 0.60
148 6 0.05
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (147 bp):
ATCTTCAATCTTCAGTCTCCTTTCTTACTACCTCAGAAAGATAAGACTCAATCTTCAACCTACTC
TCTTGCTACCTCAGAGAGATAAGGCTCAAGGCTAAAATCTGCTCCATTGCCGATACATAGAGATA
AGATTCGCCATCTTCCA
Found at i:90862386 original size:44 final size:44
Alignment explanation
Indices: 90862291--90862388 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 44
90862281 TACTATTTAG
** *
90862291 GGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCAACCTCA
1 GGAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCAACCTTA
*
90862335 GGAAGATAAGA-CTATC-ATCTTCAACCTGC-TCTCTTGCTACCTTA
1 GG-AGATAAGATCT-TCAATCTTCAACCTGCTTC-CTTGCAACCTTA
90862379 GAGAGATAAG
1 G-GAGATAAG
90862389 GTCAGTGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
43 2 0.04
44 33 0.72
45 11 0.24
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
GGAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCAACCTTA
Found at i:90862419 original size:177 final size:177
Alignment explanation
Indices: 90862123--90862701 Score: 576
Period size: 177 Copynumber: 3.3 Consensus size: 177
90862113 GCCTCTTCCA
* * * *
90862123 ATCTTCAATCTTCAGTCTGTTTCCTTGCTACCTTAGTAAGATAAGACTACCATCTTCAACCTACT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCAACCTCAGGAAGATAAGACTACCATCTTCAACCTACT
* *
90862188 CTCTTGTTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTGCGTGGAGAT
66 CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTGCATGGAGAT
* * * * *
90862253 AAGATTCGCCATCTTCGATCTGCTCTGCTACTATTTAGGGAGATAAG
131 AAGATTCGCCATCCTCAATCTGCTCCGCTACTACTGAGGGAGATAAG
* *
90862300 ATCTTCAATCTTCAGTCTGCTTCCTTGCAACCTCAGGAAGATAAGACTATCATCTTCAACCTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCAACCTCAGGAAGATAAGACTACCATCTTCAACCTACT
* * * * *
90862365 CTCTTGCTACCTTAGAGAGATAAGGTCAGTGGCTAAAATTTTCTCCATTGCCTGTGCATGGAGAT
66 CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTGCATGGAGAT
*
90862430 AAGATTCGCCATCCTCAATCTGCTCCGCTACTGCTGAGGGAGATAAG
131 AAGATTCGCCATCCTCAATCTGCTCCGCTACTACTGAGGGAGATAAG
* * * * * * * * * *
90862477 ATCTTCAATCTTTAATCTGCTCTAC-TGCAACATCAGGGAGATAAGACTTA-TATATTGAGCCTG
1 ATCTTCAATCTTCAGTCTGCT-TCCTTGCAACCTCAGGAAGATAAGAC-TACCATCTTCAACCTA
* * * * *** * * * *
90862540 CTC-CACTGCAACTTCAGGGAGATAAGGCTGGTGAC-ATAAATCTGCTTCATTGCCGGTACATGG
64 CTCTC-TTGCTACCTCAGAGAGATAAGGCCAATGGCTA-AAATCTGCTCCATTGCCTGTGCATGG
* * * * * * * * * * *
90862603 AGATAAGATTTGTCGTCTTTAGTCTGTTCCACTACTGCTTAGGGAAATAAG
127 AGATAAGATTCGCCATCCTCAATCTGCTCCGCTACTACTGAGGGAGATAAG
* * *
90862654 A-CTTGCAATCTTTAGTCTG-TTCCACTGCAACCTCAGGGAGATAAGACT
1 ATCTT-CAATCTTCAGTCTGCTTCC-TTGCAACCTCAGGAAGATAAGACT
90862702 TGACTTCACC
Statistics
Matches: 340, Mismatches: 55, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
175 2 0.01
176 7 0.02
177 327 0.96
178 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
ATCTTCAATCTTCAGTCTGCTTCCTTGCAACCTCAGGAAGATAAGACTACCATCTTCAACCTACT
CTCTTGCTACCTCAGAGAGATAAGGCCAATGGCTAAAATCTGCTCCATTGCCTGTGCATGGAGAT
AAGATTCGCCATCCTCAATCTGCTCCGCTACTACTGAGGGAGATAAG
Found at i:90862522 original size:45 final size:44
Alignment explanation
Indices: 90862466--90862565 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 44
90862456 GCTACTGCTG
* * * *
90862466 AGGGAGATAAGATCTTCA-ATCTTTAATCTGCTCTACTGCAACATC
1 AGGGAGATAAGA-CTT-ATATATTGAACCTGCTCCACTGCAACATC
* *
90862511 AGGGAGATAAGACTTATATATTGAGCCTGCTCCACTGCAACTTC
1 AGGGAGATAAGACTTATATATTGAACCTGCTCCACTGCAACATC
90862555 AGGGAGATAAG
1 AGGGAGATAAG
90862566 GCTGGTGACA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.02
44 35 0.73
45 12 0.25
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
AGGGAGATAAGACTTATATATTGAACCTGCTCCACTGCAACATC
Found at i:90862876 original size:64 final size:64
Alignment explanation
Indices: 90862771--90862960 Score: 301
Period size: 64 Copynumber: 3.0 Consensus size: 64
90862761 ATGTCTATGA
*
90862771 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAAATATGATGC
1 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAAATATGATGC
* * *
90862835 TTATGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGA-GATGC
1 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAAAT-ATGATGC
* * *
90862899 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATACTCCCAACTAAATGTGAT
1 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAAATATGAT
90862961 ATGAATGATA
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
64 113 0.99
65 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (64 bp):
TTATGTCAAATAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAAATATGATGC
Found at i:90864095 original size:23 final size:23
Alignment explanation
Indices: 90864069--90864117 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
90864059 TCGCCTTGGC
* *
90864069 TTTTCCTTTTCTTTCTTCTTTTT
1 TTTTCATTTTCTTTCTTCTTTAT
* *
90864092 TTTTTATTTTCTTTTTTCTTTAT
1 TTTTCATTTTCTTTCTTCTTTAT
90864115 TTT
1 TTT
90864118 CTTTTTTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTCATTTTCTTTCTTCTTTAT
Found at i:90864107 original size:17 final size:16
Alignment explanation
Indices: 90864084--90864125 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
90864074 CTTTTCTTTC
*
90864084 TTCTTTTTTTTTTATT
1 TTCTTTTTTCTTTATT
90864100 TTCTTTTTTCTTTATT
1 TTCTTTTTTCTTTATT
90864116 TTCTTTTTTC
1 TTCTTTTTTC
90864126 AAATTTTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (16 bp):
TTCTTTTTTCTTTATT
Found at i:90864124 original size:23 final size:23
Alignment explanation
Indices: 90864075--90864125 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
90864065 TGGCTTTTCC
*
90864075 TTTTCTTTCTTCTTTTTTTTTTA
1 TTTTCTTTCTTCTTTTTTTCTTA
*
90864098 TTTTCTTTTTTCTTTATTTTCTT-
1 TTTTCTTTCTTCTTT-TTTTCTTA
90864121 TTTTC
1 TTTTC
90864126 AAATTTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTCTTTCTTCTTTTTTTCTTA
Found at i:90864733 original size:28 final size:28
Alignment explanation
Indices: 90864697--90864759 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
90864687 TCACTATGAC
*
90864697 CTTTGTTCTATTGTTTG-CTTTTCCTTTT
1 CTTTTTTCTATT-TTTGACTTTTCCTTTT
**
90864725 CTTTTTTCTATTTTTGTACTTTTGTTTTT
1 CTTTTTTCTATTTTTG-ACTTTTCCTTTT
90864754 CTTTTT
1 CTTTTT
90864760 GGATGCCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 4 0.13
28 11 0.37
29 15 0.50
ACGTcount: A:0.05, C:0.14, G:0.08, T:0.73
Consensus pattern (28 bp):
CTTTTTTCTATTTTTGACTTTTCCTTTT
Found at i:90874429 original size:46 final size:46
Alignment explanation
Indices: 90874362--90874536 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
90874352 TGTAACCCGC
*
90874362 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * * *
90874408 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* * * *
90874458 -C-TCA-CGAACTCGCACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
*
90874501 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAG
90874537 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 57 0.55
47 24 0.23
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:90874482 original size:93 final size:93
Alignment explanation
Indices: 90874369--90874540 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
90874359 CGCCCATAAG
* *
90874369 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGCACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
90874434 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* * *
90874462 CGAACTCGCACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGCACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
90874527 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
90874541 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGCACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:90881893 original size:46 final size:46
Alignment explanation
Indices: 90881826--90881998 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
90881816 TGTAACCCGC
* *
90881826 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
* * *
90881872 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC--GTTCGCAT
* * *
90881922 -C-TCA-CGAACTCGGACCCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
*
90881965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
90881999 GGATGCTCAA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 3 0.03
46 57 0.54
47 25 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
Done.