Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 300 of 378
Found at i:90881992 original size:93 final size:93
Alignment explanation
Indices: 90881833--90882004 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
90881823 CGCCCATAAG
* * *
90881833 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACCCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90881898 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
90881926 CGAACTCGGACCCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACCCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90881991 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
90882005 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACCCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:90883333 original size:9 final size:8
Alignment explanation
Indices: 90883307--90883349 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
90883297 CTCCCCCCCT
90883307 TTTTAAAA
1 TTTTAAAA
90883315 TTTTAAAA
1 TTTTAAAA
90883323 TTTTAACAA
1 TTTTAA-AA
*
90883332 --TTCAAA
1 TTTTAAAA
90883338 TTTTAAAA
1 TTTTAAAA
90883346 TTTT
1 TTTT
90883350 GGGGTGTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
6 2 0.07
7 3 0.10
8 23 0.77
9 2 0.07
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:90884154 original size:47 final size:47
Alignment explanation
Indices: 90884103--90884198 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
90884093 TTACATGCCT
90884103 TAAAATGTCTAATTTTTTTTGTGCATTTTTAGGCTTTTGTCTCGAGA
1 TAAAATGTCTAATTTTTTTTGTGCATTTTTAGGCTTTTGTCTCGAGA
90884150 TAAAATGTCTAATTTTTTTTGTGCATTTTTAGGCTTTTGTCTCGAGA
1 TAAAATGTCTAATTTTTTTTGTGCATTTTTAGGCTTTTGTCTCGAGA
90884197 TA
1 TA
90884199 GATAGAAAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.22, C:0.10, G:0.17, T:0.51
Consensus pattern (47 bp):
TAAAATGTCTAATTTTTTTTGTGCATTTTTAGGCTTTTGTCTCGAGA
Found at i:90887894 original size:10 final size:9
Alignment explanation
Indices: 90887870--90887895 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
90887860 TTCAAGAATC
90887870 TCAAAAACA
1 TCAAAAACA
90887879 TCAAAAACA
1 TCAAAAACA
90887888 TCAAAAAC
1 TCAAAAAC
90887896 CAACACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:90889620 original size:15 final size:15
Alignment explanation
Indices: 90889600--90889629 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90889590 AGAAACCTAG
90889600 AATAAAAAGATCCAA
1 AATAAAAAGATCCAA
*
90889615 AATAAAGAGATCCAA
1 AATAAAAAGATCCAA
90889630 TATTGAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
AATAAAAAGATCCAA
Found at i:90890496 original size:6 final size:6
Alignment explanation
Indices: 90890481--90890521 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
90890471 ACTTGACTCT
*
90890481 CATATA CATATC CATATC CATATC CATATC CATATC CATAT
1 CATATC CATATC CATATC CATATC CATATC CATATC CATAT
90890522 GACACAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (6 bp):
CATATC
Found at i:90893241 original size:16 final size:15
Alignment explanation
Indices: 90893219--90893263 Score: 74
Period size: 15 Copynumber: 3.0 Consensus size: 15
90893209 TCCTCGTGCC
90893219 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
90893234 T-AAAAAAATAAAAAA
1 TAAAAAAAAT-AAAAA
90893249 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
90893264 AAGCATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.29
15 12 0.43
16 8 0.29
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:90893264 original size:7 final size:7
Alignment explanation
Indices: 90893222--90893255 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
90893212 TCGTGCCTAA
90893222 AAAAAAT
1 AAAAAAT
90893229 -AAAAAT
1 AAAAAAT
90893235 AAAAAAAT
1 -AAAAAAT
90893243 AAAAAAT
1 AAAAAAT
90893250 AAAAAA
1 AAAAAA
90893256 AATAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 13 0.52
8 6 0.24
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:90893273 original size:11 final size:9
Alignment explanation
Indices: 90893219--90893265 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
90893209 TCCTCGTGCC
90893219 TAAAAAAAA
1 TAAAAAAAA
90893228 TAAAAATAAAA
1 T-AAAA-AAAA
*
90893239 AAATAAAAAA
1 TAA-AAAAAA
90893249 TAAAAAAAA
1 TAAAAAAAA
90893258 TAAAAAAA
1 TAAAAAAA
90893266 GCATAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 15 0.45
10 12 0.36
11 6 0.18
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:90903049 original size:23 final size:23
Alignment explanation
Indices: 90903023--90903068 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
90903013 TTTTTAGGTG
90903023 AAGATCTTACGAGAGATGGTAAC
1 AAGATCTTACGAGAGATGGTAAC
90903046 AAGATCTTACGAGAGATGGTAAC
1 AAGATCTTACGAGAGATGGTAAC
90903069 CCGCTGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (23 bp):
AAGATCTTACGAGAGATGGTAAC
Found at i:90906438 original size:3 final size:3
Alignment explanation
Indices: 90906430--90906496 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
90906420 TTTATTTGGG
90906430 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90906478 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
90906497 TTTGTGGGTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:90906785 original size:20 final size:21
Alignment explanation
Indices: 90906760--90906799 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90906750 ACTTTGAAAT
*
90906760 AGGGC-ACACGCTCGTGTAGA
1 AGGGCAACACGCCCGTGTAGA
*
90906780 AGGGCAACATGCCCGTGTAG
1 AGGGCAACACGCCCGTGTAG
90906800 CCATTTCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTAGA
Found at i:90908087 original size:46 final size:45
Alignment explanation
Indices: 90907998--90908214 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 45
90907988 TATCTCAAGT
* * *
90907998 CGATGCCATGTCCTAGACATGGTCTTACACTGAGTATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTG-GCATCGTCTCG-AGGC
* *
90908046 TGATGCATGTCCCAGACATGCCTTACACTGGCATACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCAT-CGTCTCGAGGC
* *
90908092 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA-TCGTCTCGAGGC
* * * * *
90908138 TGATGCCATGTCCCCGACATGGTCTTACACGGGC-TC-TCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCGTC-T--CGAGGC
90908186 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
90908215 AGCTCACATT
Statistics
Matches: 142, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
45 6 0.04
46 74 0.52
47 40 0.28
48 22 0.15
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATCGTCTCGAGGC
Found at i:90908595 original size:30 final size:30
Alignment explanation
Indices: 90908556--90908612 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
90908546 ATTCACTTCT
*
90908556 TTGAAAAAATGACCATTTTGCCCCTAGACC
1 TTGAAAAAATGACCATTTTACCCCTAGACC
*
90908586 TTGACAAAATGACCATTTTACCCCTAG
1 TTGAAAAAATGACCATTTTACCCCTAG
90908613 GCTCGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (30 bp):
TTGAAAAAATGACCATTTTACCCCTAGACC
Found at i:90915742 original size:47 final size:48
Alignment explanation
Indices: 90915670--90915935 Score: 225
Period size: 47 Copynumber: 5.7 Consensus size: 48
90915660 GGGGTAAGGT
*
90915670 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAA
** * *
90915717 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
* * *
90915765 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCTCGAA
* *
90915811 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATCTCGATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCTCGA-A
** * * * **
90915858 -CCGATGTAATGTCCCAAACATGGTCTTACAC-GAGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTATCAT-CTCGAA
*
90915905 GCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
90915936 AGCTCACATT
Statistics
Matches: 178, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 72 0.40
47 76 0.43
48 28 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:90915819 original size:46 final size:46
Alignment explanation
Indices: 90915725--90915935 Score: 175
Period size: 46 Copynumber: 4.5 Consensus size: 46
90915715 AAGTTGATGC
*
90915725 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGTAGCCAATG
* * *
90915772 CATGTCCCAGACATGTCTTACACTGGCT-TACGTCTTG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGTA-GCCAATG
*
90915818 CATGTCCCAGACATGTCTTACACT-AGC-ACTCATCTCGATA-CCGATG
1 CATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCG-TAGCCAATG
* * * * * *
90915864 TAATGTCCCAAACATGGTCTTACAC-GAGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGA-CTATCAT-CTCGTAGCCAATG
*
90915912 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
90915936 AGCTCACATT
Statistics
Matches: 134, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
45 2 0.01
46 68 0.51
47 39 0.29
48 24 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGTAGCCAATG
Found at i:90915925 original size:94 final size:93
Alignment explanation
Indices: 90915720--90915938 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 93
90915710 ATCTCAAGTT
* *
90915720 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTAGCCGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-ATCATCTCGTAGCCGATGAATGTCCCAAA
* **
90915783 CATGTCTTACACTGGCTTACGTCTTGAGGCC
63 CATGTCTTACACTGGCTTACATAATGAGGCC
*
90915814 AATGCATGTCCCAGACATGTCTTACACTAGCAC-TCATCTCGATA-CCGATGTAATGTCCCAAAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATCATCTCG-TAGCCGATG-AATGTCCCAAAC
*
90915877 ATGGTCTTACAC-GAGCTCT-CATAATGTGGCC
64 AT-GTCTTACACTG-GCT-TACATAATGAGGCC
*
90915908 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
90915939 TCACATTAAC
Statistics
Matches: 109, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
92 24 0.22
93 30 0.28
94 54 0.50
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACATCATCTCGTAGCCGATGAATGTCCCAAACAT
GTCTTACACTGGCTTACATAATGAGGCC
Found at i:90920005 original size:40 final size:40
Alignment explanation
Indices: 90919950--90920171 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
90919940 TATTCAGATG
* *
90919950 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
90919990 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT
* *
90920030 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
90920070 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT
* * * *
90920110 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
90920150 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
90920172 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.08
40 147 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
Found at i:90920083 original size:80 final size:80
Alignment explanation
Indices: 90919950--90920171 Score: 374
Period size: 80 Copynumber: 2.8 Consensus size: 80
90919940 TATTCAGATG
* * * *
90919950 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
90920015 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
90920030 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
90920095 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* * *
90920110 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
90920172 TACTTGGGTT
Statistics
Matches: 135, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 15 0.11
80 120 0.89
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:90922050 original size:30 final size:30
Alignment explanation
Indices: 90922016--90922078 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
90922006 ACTTATTTTA
90922016 TTGTT-AATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTT-TTATTATTTTAAAGGCAT
*
90922046 TTGTTAAATTTTTTATTATTTTAGAGGCAT
1 TTGTTAAATTTTTTATTATTTTAAAGGCAT
90922076 TTG
1 TTG
90922079 CTCGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.81
31 6 0.19
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAAATTTTTTATTATTTTAAAGGCAT
Found at i:90934262 original size:9 final size:9
Alignment explanation
Indices: 90934249--90934290 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
90934239 TAAAGAGAAC
90934249 AAAGAAATA
1 AAAGAAATA
*
90934258 GAAGAAATA
1 AAAGAAATA
*
90934267 GAAGAAATA
1 AAAGAAATA
90934276 AAAGAAATA
1 AAAGAAATA
90934285 AAAGAA
1 AAAGAA
90934291 CTCTAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.10
Consensus pattern (9 bp):
AAAGAAATA
Found at i:90937680 original size:40 final size:39
Alignment explanation
Indices: 90937528--90937682 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
90937518 AATGTGCAAA
90937528 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
*
90937567 TTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
* *
90937606 CTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
* *
90937645 TTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
90937683 GGTTACCATA
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
Found at i:90937698 original size:40 final size:39
Alignment explanation
Indices: 90937531--90937713 Score: 249
Period size: 39 Copynumber: 4.6 Consensus size: 39
90937521 GTGCAAATTG
*
90937531 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
90937570 TGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
90937609 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
90937648 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
90937688 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
90937714 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:90945623 original size:40 final size:39
Alignment explanation
Indices: 90945463--90945625 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
90945453 TGTGTATGAA
*
90945463 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
90945502 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
90945541 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90945580 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
90945620 TGTGCG
1 TGTGCG
90945626 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:90945641 original size:40 final size:39
Alignment explanation
Indices: 90945463--90945656 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
90945453 TGTGTATGAA
* *
90945463 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
90945502 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
90945541 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
90945580 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
90945620 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
90945657 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:90957792 original size:63 final size:63
Alignment explanation
Indices: 90957688--90957813 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
90957678 AGCTACCTCT
*
90957688 AGAGTTAGACCGGATACATGATGTGTTCCACGTCTCAATGTTGAGACGCTACTGCTCTGATCC
1 AGAGTTAGACCGGATACATGATGTGTTCCACGTCTCAATGTTGAGACGCTACCGCTCTGATCC
* *
90957751 AGAGTTAGACCGTATACATGATGTGTTCCACGTCTCGATGTTGAGACGCTACCGCTCTGATCC
1 AGAGTTAGACCGGATACATGATGTGTTCCACGTCTCAATGTTGAGACGCTACCGCTCTGATCC
90957814 TACGCATGTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (63 bp):
AGAGTTAGACCGGATACATGATGTGTTCCACGTCTCAATGTTGAGACGCTACCGCTCTGATCC
Found at i:90963446 original size:40 final size:40
Alignment explanation
Indices: 90963340--90963523 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
90963330 TGCTGGAAAT
* * * * * **
90963340 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
90963380 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
90963420 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
90963458 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
90963499 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
90963524 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:90971556 original size:40 final size:40
Alignment explanation
Indices: 90971450--90971633 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
90971440 TGCTGGAAAT
* * * * * **
90971450 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
90971490 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
90971530 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
90971568 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
90971609 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
90971634 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:90975603 original size:26 final size:26
Alignment explanation
Indices: 90975560--90975634 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
90975550 TTCTCATCCT
** *
90975560 ATTTTACCCTCAACAAAATTTTGACG
1 ATTTTACCCTTGATAAAATTTTGACG
* *
90975586 ATTTTACCCATT-ATAAAAATTTAACG
1 ATTTTACCC-TTGATAAAATTTTGACG
*
90975612 ATTTTGCCCTTGATAAAATTTTG
1 ATTTTACCCTTGATAAAATTTTG
90975635 TGAAAAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.05
26 37 0.93
27 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (26 bp):
ATTTTACCCTTGATAAAATTTTGACG
Found at i:90977307 original size:98 final size:98
Alignment explanation
Indices: 90977135--90977413 Score: 288
Period size: 98 Copynumber: 2.9 Consensus size: 98
90977125 AGGGTACGAT
* * * *
90977135 GCTGACGCCATGTTCCAAACGTGGTCTTACACTGGCTCTCA-C-ATCTAAGTT--GATGCCATGT
1 GCTGACGCCATGTCCCAGAC-AGGTCTTACACTGGCTCTCATCTAT-T-GGTTCCGATGCCATGT
* * *
90977196 CCGAGATAGGTCTTACACT-GACTTCCATA-CATCGAG
63 CCCAGACAGGTCTTACACTAG-CTTCCATATC-TCGAA
* * * *
90977232 GCTTACGCCATGTCCTAGACAGGTCTTGCATTGGCTCTCA-CTTATCT-GTGT-CGATGCCATGT
1 GCTGACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATC-TAT-TGGT-TCCGATGCCATGT
*
90977294 CCCAGACAGGTCTTACACTAGCTTGCATATCTCGAA
63 CCCAGACAGGTCTTACACTAGCTTCCATATCTCGAA
* *
90977330 GCTGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTTCCGATGCCATGTCCC
1 GCTGACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTTCCGATGCCATGTCCC
*
90977395 AAACAGGTCTTACACTAGC
66 AGACAGGTCTTACACTAGC
90977414 ACATACATCA
Statistics
Matches: 155, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
96 20 0.13
97 19 0.12
98 113 0.73
99 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (98 bp):
GCTGACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTTCCGATGCCATGTCCC
AGACAGGTCTTACACTAGCTTCCATATCTCGAA
Found at i:90977337 original size:49 final size:49
Alignment explanation
Indices: 90977131--90977413 Score: 188
Period size: 49 Copynumber: 5.8 Consensus size: 49
90977121 ACATAGGGTA
* * * * * *
90977131 CGATGCTGACGCCATGTTCCAAACGTGGTCTTACACTGGCTCTCACATCT
1 CGATGCTGATGCCATGTCCCAGAC-AGGTCTTACACTAGCTCTCATATCT
* * * *
90977181 --AAGTTGATGCCATGTCCGAGATAGGTCTTACACT-GACT-TCCATA-CAT
1 CGATGCTGATGCCATGTCCCAGACAGGTCTTACACTAG-CTCT-CATATC-T
* * * * * * *
90977228 CGAGGCTTACGCCATGTCCTAGACAGGTCTTGCATTGGCTCTCACTTATCT
1 CGATGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCA--TATCT
90977279 -G-TG-TCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATATCT
1 CGATGCT-GATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATCT
* * * * *
90977326 CGAAGCTGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTAT
1 CGATGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATCT
* * * * *
90977375 TGGTTCCGATGCCATGTCCCAAACAGGTCTTACACTAGC
1 CGATGCTGATGCCATGTCCCAGACAGGTCTTACACTAGC
90977414 ACATACATCA
Statistics
Matches: 180, Mismatches: 37, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
46 3 0.02
47 22 0.12
48 18 0.10
49 128 0.71
50 5 0.03
51 3 0.02
52 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (49 bp):
CGATGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATCT
Found at i:90982286 original size:19 final size:21
Alignment explanation
Indices: 90982248--90982292 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
90982238 AAAAATATAA
90982248 ATTTTGTAATTTTTATAAA-T
1 ATTTTGTAATTTTTATAAATT
90982268 ATTTTG-AATTTTTGA-AAATT
1 ATTTTGTAATTTTT-ATAAATT
90982288 ATTTT
1 ATTTT
90982293 CAAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
ATTTTGTAATTTTTATAAATT
Found at i:90983554 original size:23 final size:24
Alignment explanation
Indices: 90983513--90983559 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
90983503 TTTTGAACAA
*
90983513 AATATTTGAGCATATGACAAATAT
1 AATATTTGAGCATACGACAAATAT
*
90983537 AATATTTG-GCATACGACACATAT
1 AATATTTGAGCATACGACAAATAT
90983560 GTAACTAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.32
Consensus pattern (24 bp):
AATATTTGAGCATACGACAAATAT
Found at i:90984689 original size:18 final size:18
Alignment explanation
Indices: 90984663--90984726 Score: 53
Period size: 19 Copynumber: 3.6 Consensus size: 18
90984653 ATCGTTTACT
*
90984663 AATAATTTTATATTTTTA
1 AATATTTTTATATTTTTA
*
90984681 AATATTTTTATTATTTTGGA
1 AATATTTTTA-TATTTT-TA
*
90984701 AAT-TGTTTATAATTTTT-
1 AATATTTTTAT-ATTTTTA
90984718 -ATATTTTTA
1 AATATTTTTA
90984727 GAATATTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
16 2 0.05
17 5 0.14
18 10 0.27
19 16 0.43
20 4 0.11
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
AATATTTTTATATTTTTA
Found at i:90984716 original size:28 final size:29
Alignment explanation
Indices: 90984672--90984749 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 29
90984662 TAATAATTTT
* *
90984672 ATATTTTTAAATATTTTTATTA-TTTTGGA
1 ATATTTTTAGA-ATTTTTATTATTTTTAGA
*
90984701 A-ATTGTTTATAATTTTTA-TATTTTTAGA
1 ATATT-TTTAGAATTTTTATTATTTTTAGA
90984729 ATATTTTTAGAATTTTTATTA
1 ATATTTTTAGAATTTTTATTA
90984750 ACTATTTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
27 2 0.05
28 29 0.69
29 11 0.26
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (29 bp):
ATATTTTTAGAATTTTTATTATTTTTAGA
Found at i:90984720 original size:9 final size:9
Alignment explanation
Indices: 90984664--90984767 Score: 54
Period size: 9 Copynumber: 11.1 Consensus size: 9
90984654 TCGTTTACTA
90984664 ATAA-TTTT
1 ATAATTTTT
90984672 AT-ATTTTT
1 ATAATTTTT
*
90984680 AAATATTTTT
1 ATA-ATTTTT
* *
90984690 ATTATTTTGG
1 ATAATTTT-T
90984700 A-AATTGTTT
1 ATAATT-TTT
90984709 ATAATTTTT
1 ATAATTTTT
90984718 AT-ATTTTT
1 ATAATTTTT
*
90984726 AGAATATTTTT
1 A-TA-ATTTTT
*
90984737 AGAATTTTT
1 ATAATTTTT
90984746 ATTAACTATTTT
1 A-TAA-T-TTTT
*
90984758 ATAAATTTT
1 ATAATTTTT
90984767 A
1 A
90984768 ATTCTATTAA
Statistics
Matches: 74, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
7 1 0.01
8 14 0.19
9 26 0.35
10 17 0.23
11 11 0.15
12 5 0.07
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:90986744 original size:25 final size:26
Alignment explanation
Indices: 90986710--90986766 Score: 107
Period size: 25 Copynumber: 2.2 Consensus size: 26
90986700 ACCAACATAA
90986710 TCTCATGTTGAAATAGGAAGTTTAG-
1 TCTCATGTTGAAATAGGAAGTTTAGT
90986735 TCTCATGTTGAAATAGGAAGTTTAGT
1 TCTCATGTTGAAATAGGAAGTTTAGT
90986761 TCTCAT
1 TCTCAT
90986767 AAGTAATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.81
26 6 0.19
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
TCTCATGTTGAAATAGGAAGTTTAGT
Found at i:90987661 original size:15 final size:16
Alignment explanation
Indices: 90987641--90987670 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90987631 TTGCTAAAAT
90987641 ATTTA-TTTTATTTTA
1 ATTTATTTTTATTTTA
90987656 ATTTATTTTTATTTT
1 ATTTATTTTTATTTT
90987671 GAGAATAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTATTTTTATTTTA
Found at i:90999699 original size:29 final size:29
Alignment explanation
Indices: 90999666--90999767 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
90999656 GTGACGAGAT
*
90999666 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
90999695 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
90999724 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
90999753 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
90999768 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:90999783 original size:29 final size:29
Alignment explanation
Indices: 90999666--90999827 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
90999656 GTGACGAGAT
* **
90999666 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
90999695 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
90999724 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
90999753 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
90999782 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
90999811 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
90999828 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:90999796 original size:58 final size:59
Alignment explanation
Indices: 90999662--90999788 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
90999652 TACGGTGACG
* * *
90999662 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
90999719 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
90999777 GGGTATGGCACT
1 AGATATGGCACT
90999789 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:91003960 original size:60 final size:60
Alignment explanation
Indices: 91003891--91004008 Score: 236
Period size: 60 Copynumber: 2.0 Consensus size: 60
91003881 GTCAAATTGT
91003891 AACATAAATGCTTCAACTTACAAAGCCATTAACAATTTGGCCCTTATGCTTTTAACTAGC
1 AACATAAATGCTTCAACTTACAAAGCCATTAACAATTTGGCCCTTATGCTTTTAACTAGC
91003951 AACATAAATGCTTCAACTTACAAAGCCATTAACAATTTGGCCCTTATGCTTTTAACTA
1 AACATAAATGCTTCAACTTACAAAGCCATTAACAATTTGGCCCTTATGCTTTTAACTA
91004009 TCAAGTTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (60 bp):
AACATAAATGCTTCAACTTACAAAGCCATTAACAATTTGGCCCTTATGCTTTTAACTAGC
Found at i:91006299 original size:40 final size:40
Alignment explanation
Indices: 91006244--91006411 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
91006234 TGAATGATAC
* *
91006244 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* *
91006284 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
91006324 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * *
91006364 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
91006404 CC-GGCTAA
1 CCGGGCTAA
91006412 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:91006401 original size:80 final size:80
Alignment explanation
Indices: 91006244--91006411 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 80
91006234 TGAATGATAC
* * ** *
91006244 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCA
1 CCGGGCTAAGACCCGAAGACATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCA
*
91006309 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * *
91006324 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGACATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
* **
91006388 GTGCTTGTGGTTATAT
65 ATGCGAGTGGTTATAT
91006404 CC-GGCTAA
1 CCGGGCTAA
91006412 ATTCCGAAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 65 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCA
TGCGAGTGGTTATAT
Found at i:91013261 original size:40 final size:39
Alignment explanation
Indices: 91013101--91013263 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
91013091 TGTGTATGAA
*
91013101 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91013140 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91013179 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91013218 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91013258 TGTGCG
1 TGTGCG
91013264 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91013279 original size:40 final size:39
Alignment explanation
Indices: 91013101--91013294 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
91013091 TGTGTATGAA
* *
91013101 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
91013140 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91013179 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91013218 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
91013258 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
91013295 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91021188 original size:40 final size:39
Alignment explanation
Indices: 91021028--91021190 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
91021018 TGTGTATGAA
*
91021028 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91021067 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91021106 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91021145 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91021185 TGTGCG
1 TGTGCG
91021191 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91021206 original size:40 final size:39
Alignment explanation
Indices: 91021028--91021221 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
91021018 TGTGTATGAA
* *
91021028 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
91021067 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91021106 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91021145 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
91021185 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
91021222 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91024221 original size:2 final size:2
Alignment explanation
Indices: 91024209--91024252 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
91024199 ACTTTAATAC
*
91024209 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91024251 AT
1 AT
91024253 CCCTTTCAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:91037358 original size:25 final size:25
Alignment explanation
Indices: 91037324--91037406 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
91037314 TATAGTACTG
*
91037324 ACACAAATGCCCTTCGGGACTTATC
1 ACACATATGCCCTTCGGGACTTATC
* *
91037349 ACACATATGCACTTTC---ACAT-TC
1 ACACATATGC-CCTTCGGGACTTATC
91037371 ATCACATATGCCCTTCGGGACTTATC
1 A-CACATATGCCCTTCGGGACTTATC
91037397 ACACATATGC
1 ACACATATGC
91037407 ACTTTCACAT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
22 7 0.15
23 12 0.26
25 21 0.45
26 7 0.15
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (25 bp):
ACACATATGCCCTTCGGGACTTATC
Found at i:91037380 original size:23 final size:23
Alignment explanation
Indices: 91037350--91037425 Score: 84
Period size: 23 Copynumber: 3.2 Consensus size: 23
91037340 GGACTTATCA
91037350 CACATATGCACTTTCACATTCAT
1 CACATATGCACTTTCACATTCAT
* *
91037373 CACATATGC-CCTTCGGGACTTATCA-
1 CACATATGCACTTTC---ACAT-TCAT
91037398 CACATATGCACTTTCACATTCAT
1 CACATATGCACTTTCACATTCAT
91037421 CACAT
1 CACAT
91037426 CGGCTATTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 7 0.16
23 17 0.40
25 12 0.28
26 7 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (23 bp):
CACATATGCACTTTCACATTCAT
Found at i:91037422 original size:25 final size:25
Alignment explanation
Indices: 91037346--91037424 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
91037336 TTCGGGACTT
91037346 ATCACACATATGCACTTTCACATTC
1 ATCACACATATGCACTTTCACATTC
*
91037371 AT--CACATATGC-CCTTCGGGAC-TT-
1 ATCACACATATGCACTTTC---ACATTC
91037394 ATCACACATATGCACTTTCACATTC
1 ATCACACATATGCACTTTCACATTC
91037419 ATCACA
1 ATCACA
91037425 TCGGCTATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
22 4 0.09
23 13 0.30
24 4 0.09
25 19 0.43
26 4 0.09
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (25 bp):
ATCACACATATGCACTTTCACATTC
Found at i:91037460 original size:47 final size:47
Alignment explanation
Indices: 91037343--91037781 Score: 628
Period size: 47 Copynumber: 9.3 Consensus size: 47
91037333 CCCTTCGGGA
* * * *
91037343 CTTATCACACATATGCACTTTCACATTCATCACATAT-GCCCTTCGGGA
1 CTTATCACACATATACACTTTCACATTCATCACAT-TGGCCATT-AGGC
* * *
91037391 CTTATCACACATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
91037438 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
91037485 CTTACCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
91037532 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
91037579 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
91037626 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
91037673 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
91037720 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
91037767 CTTATCACACATATA
1 CTTATCACACATATA
91037782 TGTATATCAT
Statistics
Matches: 347, Mismatches: 43, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
47 308 0.89
48 39 0.11
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:91037529 original size:94 final size:94
Alignment explanation
Indices: 91037343--91037781 Score: 754
Period size: 94 Copynumber: 4.7 Consensus size: 94
91037333 CCCTTCGGGA
* * * * * *
91037343 CTTATCACACATATGCACTTTCACATTCATCACATAT-GCCCTTCGGGACTTATCACACATATGC
1 CTTATCACATATATACACTTTCACATCCATCACAT-TGGCCGTTC-GGCCTTATCACACATATAC
* *
91037407 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATGGGCCATTAGGC
*
91037438 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTACCACACATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
91037503 TTTCACATTCATCACATGGGCCATTAGGC
66 TTTCACATTCATCACATGGGCCATTAGGC
91037532 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
91037597 TTTCACATTCATCACATGGGCCATTAGGC
66 TTTCACATTCATCACATGGGCCATTAGGC
91037626 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
91037691 TTTCACATTCATCACATGGGCCATTAGGC
66 TTTCACATTCATCACATGGGCCATTAGGC
* *
91037720 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATA
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATA
91037782 TGTATATCAT
Statistics
Matches: 331, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
94 293 0.89
95 38 0.11
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGCCTTATCACACATATACAC
TTTCACATTCATCACATGGGCCATTAGGC
Found at i:91040938 original size:40 final size:40
Alignment explanation
Indices: 91040893--91041334 Score: 670
Period size: 40 Copynumber: 11.1 Consensus size: 40
91040883 CGAATACACG
* * * *
91040893 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
91040933 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* *
91040973 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
91041013 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
91041053 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
91041093 TCACTAGTACGAATGCTCTTCGGGACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
91041133 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
91041173 TCACTAGCATGAATGCTCTTCAGGACTTAGCTCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
91041213 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
91041253 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
91041293 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
91041333 TC
1 TC
91041335 GTCAAGACCT
Statistics
Matches: 369, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 365 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:91041435 original size:38 final size:38
Alignment explanation
Indices: 91041388--91041462 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
91041378 GAATTTTAAT
*
91041388 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* * *
91041426 CCGGTCATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
91041463 AACTCGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:91052743 original size:40 final size:40
Alignment explanation
Indices: 91052680--91052900 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
91052670 ATTCGGATTG
*
91052680 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91052719 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
91052759 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91052799 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91052839 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
91052879 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
91052901 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 29 0.17
40 140 0.83
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:91061888 original size:71 final size:71
Alignment explanation
Indices: 91061804--91061967 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91061794 CGATTTGTCT
91061804 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91061869 CTTTCA
66 CTTTCA
91061875 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91061940 CTTTCA
66 CTTTCA
91061946 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91061968 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91062005 original size:71 final size:70
Alignment explanation
Indices: 91061804--91062001 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
91061794 CGATTTGTCT
* * * *
91061804 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91061869 CTTTCA
65 CTTTCA
* * * *
91061875 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91061940 CTTTCA
65 CTTTCA
* *
91061946 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
91062002 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91070742 original size:40 final size:40
Alignment explanation
Indices: 91070679--91070899 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
91070669 ATTCGGATTG
91070679 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91070718 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
91070758 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91070798 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91070838 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
91070878 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
91070900 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 29 0.17
40 141 0.83
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:91078803 original size:40 final size:40
Alignment explanation
Indices: 91078744--91078950 Score: 314
Period size: 40 Copynumber: 5.2 Consensus size: 40
91078734 GGATTGATAA
91078744 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
91078783 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
91078824 -CGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
91078863 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91078903 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
91078943 CC-GGCTAA
1 CCGGGCTAA
91078951 ACCTCGAAGG
Statistics
Matches: 157, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 19 0.12
40 136 0.87
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:91082269 original size:40 final size:39
Alignment explanation
Indices: 91082104--91082287 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
91082094 AAATTGAATG
* * *
91082104 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
91082144 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
91082184 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
91082224 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
91082263 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
91082288 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:91082312 original size:80 final size:81
Alignment explanation
Indices: 91082144--91082332 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
91082134 GCTGGAAATT
* * * *
91082144 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
91082209 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
91082225 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
91082288 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
91082304 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
91082333 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:91086638 original size:11 final size:11
Alignment explanation
Indices: 91086622--91086646 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91086612 CCCCAATTCT
91086622 AGTGCAACCCG
1 AGTGCAACCCG
91086633 AGTGCAACCCG
1 AGTGCAACCCG
91086644 AGT
1 AGT
91086647 CTGGCAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.28, T:0.12
Consensus pattern (11 bp):
AGTGCAACCCG
Found at i:91090400 original size:40 final size:39
Alignment explanation
Indices: 91090235--91090418 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
91090225 AAATTGAATG
* * *
91090235 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
91090275 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
91090315 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
91090355 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
91090394 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
91090419 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:91090443 original size:80 final size:81
Alignment explanation
Indices: 91090275--91090463 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
91090265 GCTGGAAATT
* * * *
91090275 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
91090340 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
91090356 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
91090419 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
91090435 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
91090464 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:91101634 original size:19 final size:19
Alignment explanation
Indices: 91101580--91101639 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
91101570 TATTTGCATC
*
91101580 TTACTATATGTTATATGTATT
1 TTACTATAT-TT-TATCTATT
* * *
91101601 TTCATTATATATTATTTATT
1 TT-ACTATATTTTATCTATT
91101621 TTACTATATTTTATCTATT
1 TTACTATATTTTATCTATT
91101640 ATATTATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 14 0.44
20 9 0.28
21 3 0.09
22 6 0.19
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (19 bp):
TTACTATATTTTATCTATT
Found at i:91101647 original size:17 final size:16
Alignment explanation
Indices: 91101590--91101764 Score: 61
Period size: 15 Copynumber: 10.9 Consensus size: 16
91101580 TTACTATATG
91101590 TTATATGTATTTTCATTA
1 TTATAT-TATTTT-ATTA
91101608 -TATATTA-TTTATT-
1 TTATATTATTTTATTA
91101621 TTACTA-TATTTTATCTA
1 TTA-TATTATTTTAT-TA
* *
91101638 TTATATTATTATACATTT
1 TTATATTATT-T-TATTA
91101656 TTA-ATT-TTTATCATATA
1 TTATATTATTT-T-AT-TA
*
91101673 TT-TATTA-TATATTTA
1 TTATATTATTTTA-TTA
91101688 TTAT-TTATATTTA-TA
1 TTATATTAT-TTTATTA
*
91101703 TTATATGT-TTTTAGTA
1 TTATAT-TATTTTATTA
* * *
91101719 -CATATTATTCTATAA
1 TTATATTATTTTATTA
*
91101734 TTATATTATTCATATTA
1 TTATATTATT-TTATTA
*
91101751 TTAT-TCATTTTATT
1 TTATATTATTTTATT
91101765 TATAAATTTA
Statistics
Matches: 120, Mismatches: 15, Indels: 47
0.66 0.08 0.26
Matches are distributed among these distances:
14 8 0.07
15 43 0.36
16 28 0.23
17 34 0.28
18 5 0.04
19 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (16 bp):
TTATATTATTTTATTA
Found at i:91101663 original size:31 final size:31
Alignment explanation
Indices: 91101627--91101706 Score: 80
Period size: 31 Copynumber: 2.6 Consensus size: 31
91101617 TATTTTACTA
91101627 TATTTTATCTATTATATTATTATACATTT-T
1 TATTTTATCTATTATATTATTATACATTTAT
*
91101657 TAATTTTTATC-A-TATATTTATTATATATTTAT
1 T-A-TTTTATCTATTATA-TTATTATACATTTAT
*
91101689 TA-TTTATAT-TTATATTAT
1 TATTTTATCTATTATATTAT
91101707 ATGTTTTTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
29 9 0.21
30 9 0.21
31 15 0.36
32 9 0.21
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (31 bp):
TATTTTATCTATTATATTATTATACATTTAT
Found at i:91101686 original size:24 final size:25
Alignment explanation
Indices: 91101659--91101724 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
91101649 TACATTTTTA
91101659 ATTTTTATCATATA-TT-TATTATAT
1 ATTTTTAT-ATATATTTATATTATAT
*
91101683 ATTTATTATTTATATTTATATTATAT
1 ATTT-TTATATATATTTATATTATAT
* *
91101709 GTTTTTAGTACATATT
1 ATTTTTA-TATATATT
91101725 ATTCTATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 8 0.24
25 9 0.26
26 17 0.50
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (25 bp):
ATTTTTATATATATTTATATTATAT
Found at i:91101687 original size:22 final size:22
Alignment explanation
Indices: 91101584--91101688 Score: 57
Period size: 22 Copynumber: 4.9 Consensus size: 22
91101574 TGCATCTTAC
*
91101584 TATATGTTA-TATGTATTT-TCA
1 TATAT-TTATTATATATTTATCA
91101605 TTATATATTATT-TAT-TTTA-C-
1 -TATAT-TTATTATATATTTATCA
*
91101625 TATATTTTATCTAT-TATATTATTA
1 TATA-TTTAT-TATATAT-TTATCA
* *
91101649 TACATTT-TTA-ATTTTTATCA
1 TATATTTATTATATATTTATCA
91101669 TATATTTATTATATATTTAT
1 TATATTTATTATATATTTAT
91101689 TATTTATATT
Statistics
Matches: 63, Mismatches: 8, Indels: 24
0.66 0.08 0.25
Matches are distributed among these distances:
19 8 0.13
20 14 0.22
21 13 0.21
22 21 0.33
23 4 0.06
24 3 0.05
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
TATATTTATTATATATTTATCA
Found at i:91101741 original size:16 final size:17
Alignment explanation
Indices: 91101720--91101754 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
91101710 TTTTTAGTAC
91101720 ATATTATTC-TATAATT
1 ATATTATTCATATAATT
*
91101736 ATATTATTCATATTATT
1 ATATTATTCATATAATT
91101753 AT
1 AT
91101755 TCATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTATTCATATAATT
Found at i:91101769 original size:36 final size:35
Alignment explanation
Indices: 91101686--91101769 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 35
91101676 ATTATATATT
* * *
91101686 TATTATTTATATTTATATTATATGTTTTTAGTACA
1 TATTATTTATAATTATATTATATATTATTAGTACA
*
91101721 TATTATTCTATAATTATATTATTCATATTATTA-TTCA
1 TATTATT-TATAATTATATTA-T-ATATTATTAGTACA
*
91101758 TTTTATTTATAA
1 TATTATTTATAA
91101770 ATTTAGTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
35 7 0.17
36 17 0.41
37 10 0.24
38 7 0.17
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (35 bp):
TATTATTTATAATTATATTATATATTATTAGTACA
Found at i:91101904 original size:14 final size:14
Alignment explanation
Indices: 91101868--91101905 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
91101858 ATACGTTCTT
*
91101868 CATATATTGTATTA
1 CATATATTTTATTA
*
91101882 TATATATTTTATTA
1 CATATATTTTATTA
91101896 CATATATTTT
1 CATATATTTT
91101906 TATTGCTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (14 bp):
CATATATTTTATTA
Found at i:91101915 original size:14 final size:16
Alignment explanation
Indices: 91101869--91101941 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 16
91101859 TACGTTCTTC
*
91101869 ATATATTGTATT--AT
1 ATATATTTTATTACAT
91101883 ATATATTTTATTACAT
1 ATATATTTTATTACAT
*
91101899 ATAT-TTTTATTGC-T
1 ATATATTTTATTACAT
*
91101913 ATATGATTTATATTA-TT
1 ATAT-ATTT-TATTACAT
*
91101930 ACATATTTTATT
1 ATATATTTTATT
91101942 TATAAATAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.33
15 12 0.24
16 13 0.27
17 8 0.16
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (16 bp):
ATATATTTTATTACAT
Found at i:91105305 original size:621 final size:621
Alignment explanation
Indices: 91104124--91105372 Score: 2489
Period size: 621 Copynumber: 2.0 Consensus size: 621
91104114 ACAAAAACTG
91104124 GGCTTGGACTCAGCATTCGGAGGTCTCATTTGGGTTTTTATCTAAATAACGTTTCTTAAATTATG
1 GGCTTGGACTCAGCATTCGGAGGTCTCATTTGGGTTTTTATCTAAATAACGTTTCTTAAATTATG
91104189 TAACTTTACATTCATTTGGGACTGTAATTATTTTTATATGAACTGTAGCATGGCGTTAATTTTGG
66 TAACTTTACATTCATTTGGGACTGTAATTATTTTTATATGAACTGTAGCATGGCGTTAATTTTGG
91104254 GATATTTTAGAATTATCATGCATGGATATCATACATGTAACAACCCGTTTTTAGGGTTAATCAGA
131 GATATTTTAGAATTATCATGCATGGATATCATACATGTAACAACCCGTTTTTAGGGTTAATCAGA
91104319 ACAGTGGTTTCGGGGCCACTAAATCCGATGAGTAGGTTTGTAAATATTATATTTAATATTTATGA
196 ACAGTGGTTTCGGGGCCACTAAATCCGATGAGTAGGTTTGTAAATATTATATTTAATATTTATGA
91104384 GTTAATTGTGAGTTTAAAAAAGGTTTTTTGATATTGTGATTTTTGTTCTATAAGCGATTTATTAA
261 GTTAATTGTGAGTTTAAAAAAGGTTTTTTGATATTGTGATTTTTGTTCTATAAGCGATTTATTAA
91104449 GCTCAAGTGGTATGACCCTAAGGTCAAGTGGGTTTAGAAAATGAGGTATCGAGACCTCATTTCTA
326 GCTCAAGTGGTATGACCCTAAGGTCAAGTGGGTTTAGAAAATGAGGTATCGAGACCTCATTTCTA
91104514 TAAACAGAGTCGTAAATATTTTTATAAATATTTACGGAGTGGCAATAAGATGATAATAAAGTTTC
391 TAAACAGAGTCGTAAATATTTTTATAAATATTTACGGAGTGGCAATAAGATGATAATAAAGTTTC
91104579 GTTGAAAAATTTTATTGTTTTGATAGTTAATTAAGCAAAAAGGACTAAATCGCACAAAGCGTAAA
456 GTTGAAAAATTTTATTGTTTTGATAGTTAATTAAGCAAAAAGGACTAAATCGCACAAAGCGTAAA
91104644 AGTTGTGTTCTATAAGTTAAAGATATTAAATAGCTATGGAATTAAATAGTGGGAGTACTTAAGTG
521 AGTTGTGTTCTATAAGTTAAAGATATTAAATAGCTATGGAATTAAATAGTGGGAGTACTTAAGTG
91104709 GTAATTATTCCATAATTGTTGATAGTGGAATTCCAT
586 GTAATTATTCCATAATTGTTGATAGTGGAATTCCAT
*
91104745 GGCTTGGACTCAGCATTCGGAGGTCTCATTTGGGTTTTTATTTAAATAACGTTTCTTAAATTATG
1 GGCTTGGACTCAGCATTCGGAGGTCTCATTTGGGTTTTTATCTAAATAACGTTTCTTAAATTATG
91104810 TAACTTTACATTCATTTGGGACTGTAATTATTTTTATATGAACTGTAGCATGGCGTTAATTTTGG
66 TAACTTTACATTCATTTGGGACTGTAATTATTTTTATATGAACTGTAGCATGGCGTTAATTTTGG
91104875 GATATTTTAGAATTATCATGCATGGATATCATACATGTAACAACCCGTTTTTAGGGTTAATCAGA
131 GATATTTTAGAATTATCATGCATGGATATCATACATGTAACAACCCGTTTTTAGGGTTAATCAGA
91104940 ACAGTGGTTTCGGGGCCACTAAATCCGATGAGTAGGTTTGTAAATATTATATTTAATATTTATGA
196 ACAGTGGTTTCGGGGCCACTAAATCCGATGAGTAGGTTTGTAAATATTATATTTAATATTTATGA
91105005 GTTAATTGTGAGTTTAAAAAAGGTTTTTTGATATTGTGATTTTTGTTCTATAAGCGATTTATTAA
261 GTTAATTGTGAGTTTAAAAAAGGTTTTTTGATATTGTGATTTTTGTTCTATAAGCGATTTATTAA
91105070 GCTCAAGTGGTATGACCCTAAGGTCAAGTGGGTTTAGAAAATGAGGTATCGAGACCTCATTTCTA
326 GCTCAAGTGGTATGACCCTAAGGTCAAGTGGGTTTAGAAAATGAGGTATCGAGACCTCATTTCTA
91105135 TAAACAGAGTCGTAAATATTTTTATAAATATTTACGGAGTGGCAATAAGATGATAATAAAGTTTC
391 TAAACAGAGTCGTAAATATTTTTATAAATATTTACGGAGTGGCAATAAGATGATAATAAAGTTTC
91105200 GTTGAAAAATTTTATTGTTTTGATAGTTAATTAAGCAAAAAGGACTAAATCGCACAAAGCGTAAA
456 GTTGAAAAATTTTATTGTTTTGATAGTTAATTAAGCAAAAAGGACTAAATCGCACAAAGCGTAAA
91105265 AGTTGTGTTCTATAAGTTAAAGATATTAAATAGCTATGGAATTAAATAGTGGGAGTACTTAAGTG
521 AGTTGTGTTCTATAAGTTAAAGATATTAAATAGCTATGGAATTAAATAGTGGGAGTACTTAAGTG
91105330 GTAATTATTCCATAATTGTTGATAGTGGAATTCCAT
586 GTAATTATTCCATAATTGTTGATAGTGGAATTCCAT
91105366 GGCTTGG
1 GGCTTGG
91105373 TATAATGGAA
Statistics
Matches: 627, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
621 627 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (621 bp):
GGCTTGGACTCAGCATTCGGAGGTCTCATTTGGGTTTTTATCTAAATAACGTTTCTTAAATTATG
TAACTTTACATTCATTTGGGACTGTAATTATTTTTATATGAACTGTAGCATGGCGTTAATTTTGG
GATATTTTAGAATTATCATGCATGGATATCATACATGTAACAACCCGTTTTTAGGGTTAATCAGA
ACAGTGGTTTCGGGGCCACTAAATCCGATGAGTAGGTTTGTAAATATTATATTTAATATTTATGA
GTTAATTGTGAGTTTAAAAAAGGTTTTTTGATATTGTGATTTTTGTTCTATAAGCGATTTATTAA
GCTCAAGTGGTATGACCCTAAGGTCAAGTGGGTTTAGAAAATGAGGTATCGAGACCTCATTTCTA
TAAACAGAGTCGTAAATATTTTTATAAATATTTACGGAGTGGCAATAAGATGATAATAAAGTTTC
GTTGAAAAATTTTATTGTTTTGATAGTTAATTAAGCAAAAAGGACTAAATCGCACAAAGCGTAAA
AGTTGTGTTCTATAAGTTAAAGATATTAAATAGCTATGGAATTAAATAGTGGGAGTACTTAAGTG
GTAATTATTCCATAATTGTTGATAGTGGAATTCCAT
Found at i:91106723 original size:39 final size:39
Alignment explanation
Indices: 91106678--91106905 Score: 294
Period size: 39 Copynumber: 6.1 Consensus size: 39
91106668 ATGCAAGACA
* *
91106678 CTGGAAATGAATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
91106717 TTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
91106756 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91106795 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGC-T--T-
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
91106830 C--G---TGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91106864 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
91106903 CTG
1 CTG
91106906 ATAATATAAT
Statistics
Matches: 164, Mismatches: 16, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
30 25 0.15
31 1 0.01
33 2 0.01
34 1 0.01
35 1 0.01
36 2 0.01
38 1 0.01
39 131 0.80
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:91106840 original size:30 final size:30
Alignment explanation
Indices: 91106804--91106863 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
91106794 GCTGGAAATA
91106804 TATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 TATCCGGGCCAAAGTCCCGCAGGCTTCGTG
91106834 TATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 TATCCGGGCCAAAGTCCCGCAGGCTTCGTG
91106864 CTGGAAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (30 bp):
TATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:91106877 original size:69 final size:69
Alignment explanation
Indices: 91106763--91106898 Score: 227
Period size: 69 Copynumber: 2.0 Consensus size: 69
91106753 ATGCTGGAAA
* *
91106763 TGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGC
1 TGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGC
91106828 TTCG
66 TTCG
* **
91106832 TGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGCAGGC
1 TGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGC
91106897 TT
66 TT
91106899 TGTGCTGATA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (69 bp):
TGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGC
TTCG
Found at i:91112229 original size:33 final size:33
Alignment explanation
Indices: 91112187--91112253 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
91112177 TCCACTTCTA
91112187 TACTTCAAACTAGATCATTCCCCCTTTAATATT
1 TACTTCAAACTAGATCATTCCCCCTTTAATATT
91112220 TACTTCAAACTAGATCATTCCCCCTTTAATATT
1 TACTTCAAACTAGATCATTCCCCCTTTAATATT
91112253 T
1 T
91112254 TCTCCTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (33 bp):
TACTTCAAACTAGATCATTCCCCCTTTAATATT
Found at i:91118180 original size:31 final size:32
Alignment explanation
Indices: 91118130--91118225 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
91118120 AATGCTTATC
91118130 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91118162 ATGCCCATCAT-CATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91118193 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91118225 A
1 A
91118226 AATGCATACA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.49
32 32 0.51
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:91118246 original size:32 final size:30
Alignment explanation
Indices: 91118134--91118225 Score: 148
Period size: 31 Copynumber: 2.9 Consensus size: 30
91118124 CTTATCATGC
91118134 CCATCATCCATTAACTATTAAAATGCTAATG
1 CCATCAT-CATTAACTATTAAAATGCTAATG
91118165 CCCATCATCATTAACTATTAAAATGCTAATG
1 -CCATCATCATTAACTATTAAAATGCTAATG
91118196 CCCATCATCCATTAACTATTAAAATGCTAA
1 -CCATCAT-CATTAACTATTAAAATGCTAA
91118226 AATGCATACA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.53
32 28 0.47
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (30 bp):
CCATCATCATTAACTATTAAAATGCTAATG
Found at i:91126237 original size:32 final size:32
Alignment explanation
Indices: 91126200--91126296 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
91126190 AATGCTTATC
91126200 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
91126232 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
91126264 ATGCCAATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91126296 A
1 A
91126297 AATGCATACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:91126316 original size:32 final size:31
Alignment explanation
Indices: 91126213--91126317 Score: 117
Period size: 32 Copynumber: 3.3 Consensus size: 31
91126203 CCCATCATCC
91126213 ATTAACTATTAAAATGCTAATGCCCAT-CATT
1 ATTAACTATTAAAATGCTAATG-CCATACATT
*
91126244 CATTAACTATTAAAATGCTAATGCCA-ATCATCC
1 -ATTAACTATTAAAATGCTAATGCCATA-CAT-T
91126277 ATTAACTATTAAAATGCTAAAATG-CATACATT
1 ATTAACTATTAAAATGCT--AATGCCATACATT
*
91126309 ATCAACTAT
1 ATTAACTAT
91126318 CCATCACCTT
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
31 3 0.05
32 51 0.80
33 5 0.08
34 5 0.08
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (31 bp):
ATTAACTATTAAAATGCTAATGCCATACATT
Found at i:91130891 original size:21 final size:19
Alignment explanation
Indices: 91130857--91130918 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
91130847 TAAGTTATAT
91130857 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
91130879 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
91130901 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
91130919 GTAATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:91130968 original size:21 final size:22
Alignment explanation
Indices: 91130942--91130983 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
91130932 AAAATATAGT
*
91130942 AAAATAAATAGTATA-AAAAAC
1 AAAATAAATAATATATAAAAAC
91130963 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATATAAAAA
91130984 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAC
Found at i:91131317 original size:12 final size:12
Alignment explanation
Indices: 91131298--91131332 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
91131288 ACAATTTTAT
91131298 AAAAATATATAA
1 AAAAATATATAA
*
91131310 AGAAATATATAA
1 AAAAATATATAA
91131322 AAAAATATATA
1 AAAAATATATA
91131333 GTATAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
AAAAATATATAA
Found at i:91133402 original size:207 final size:207
Alignment explanation
Indices: 91133035--91133935 Score: 1412
Period size: 207 Copynumber: 4.4 Consensus size: 207
91133025 GGTCTGCTTC
* * *
91133035 AGCCAAATTAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
1 AGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
* * *
91133100 TTGCTTCAGTGTAAACATCTGAAGGCCAGATCTGTTATGTGTCTGCTCTCCGTCGAACATGGAGA
66 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGA
* *
91133165 CGCCAAACTTCGATTTGTTCTCTGACAATATAGAGATGCCATATCATCTTAGATTTGCTTCATCG
131 CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
*
91133230 TAAGCACGTGAA
196 TAAACACGTGAA
* *
91133242 AGCCAAATTAACTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
1 AGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
* *
91133307 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGTTCTCCGTCGAATATGGAGA
66 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGA
* * * * * * *
91133372 TGCCAAACTTCGATTTGCTATCTTACAATATAGAGATGCCAAATCATCTTAGATTTCCTTCATTG
131 CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
*
91133437 TAAACACATGAA
196 TAAACACGTGAA
* *
91133449 AGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
1 AGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
*
91133514 TTGCTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGA
66 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGA
* * * *
91133579 TGCTAAACTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATTATCTTAGATTTGCTTCATCG
131 CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
*
91133644 TAAACATGTGAA
196 TAAACACGTGAA
* *
91133656 AGCCAAATCATCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGAT
1 AGCCAAATCAACTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
* * *
91133720 C-TGCTTCAGTTTAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAT
65 CTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAG
91133784 ACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATC
130 ACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATC
*
91133849 GTAAGCACGTGAA
195 GTAAACACGTGAA
* * *
91133862 AGCCAAATCAACTATAAT-TTTGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGAT
1 AGCCAAATCAACTAT-GTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
*
91133926 CTTGTTTCAG
65 CTTGCTTCAG
91133936 CTAGATCTGC
Statistics
Matches: 637, Mismatches: 54, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
206 190 0.30
207 446 0.70
208 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (207 bp):
AGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATC
TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGA
CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG
TAAACACGTGAA
Found at i:91136950 original size:22 final size:22
Alignment explanation
Indices: 91136922--91136964 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
91136912 AAAATATAGT
*
91136922 AAAATAAATAGTATAAAAAAAC
1 AAAATAAATAATATAAAAAAAC
*
91136944 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATAAAAAAA
91136965 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATAAAAAAAC
Found at i:91137298 original size:12 final size:11
Alignment explanation
Indices: 91137279--91137312 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
91137269 ACAAGTTTAT
91137279 AAAAATATATA
1 AAAAATATATA
91137290 AAGAAATATATA
1 AA-AAATATATA
91137302 AAAAATATATA
1 AAAAATATATA
91137313 GTATAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
AAAAATATATA
Found at i:91145799 original size:14 final size:14
Alignment explanation
Indices: 91145780--91145808 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91145770 AGAGGCAGAC
91145780 AAAAGAAAAATTAG
1 AAAAGAAAAATTAG
91145794 AAAAGAAAAATTAG
1 AAAAGAAAAATTAG
91145808 A
1 A
91145809 CTAAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAAGAAAAATTAG
Found at i:91152508 original size:43 final size:43
Alignment explanation
Indices: 91152444--91152605 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
91152434 ACAGACATCG
* * *
91152444 CATCCACAATGAA-TTCAGACCACTCAACGAGCTCAGATACTCA
1 CATCCATAATGAACTT-GGACCACTCAACAAGCTCAGATACTCA
* *
91152487 CATCCATAATGAACTTGGACCACTCAACAAGCTCGGATGC-CA
1 CATCCATAATGAACTTGGACCACTCAACAAGCTCAGATACTCA
* * * * * *
91152529 CATATC-TCATGAACTTGGGCCACTCAACAAGTTCA-A-AATCT
1 CAT-CCATAATGAACTTGGACCACTCAACAAGCTCAGATACTCA
*
91152570 CATACATATCATGAACTTGGACCACTCAACAAGCTC
1 CATCCATA--ATGAACTTGGACCACTCAACAAGCTC
91152606 GAATAGATTA
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
40 1 0.01
41 6 0.06
42 30 0.31
43 57 0.59
44 2 0.02
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (43 bp):
CATCCATAATGAACTTGGACCACTCAACAAGCTCAGATACTCA
Found at i:91160276 original size:60 final size:60
Alignment explanation
Indices: 91160183--91160302 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
91160173 AGTCAGGAAC
*
91160183 ATTTTTCTCTTCTATTTAGAAGGAATAAGCCCAAATGATTGGTGGACAATAGATCTCTAT
1 ATTTTTCTCTTCTATTTAGAAGGAAGAAGCCCAAATGATTGGTGGACAATAGATCTCTAT
*
91160243 ATTTTTCTCTTCTATTTAGAAGGAAGAAGCCCAAATGATTGGTGGGCAATAGATCTCTAT
1 ATTTTTCTCTTCTATTTAGAAGGAAGAAGCCCAAATGATTGGTGGACAATAGATCTCTAT
91160303 CTTGGCATGA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (60 bp):
ATTTTTCTCTTCTATTTAGAAGGAAGAAGCCCAAATGATTGGTGGACAATAGATCTCTAT
Found at i:91163515 original size:26 final size:26
Alignment explanation
Indices: 91163437--91163522 Score: 127
Period size: 26 Copynumber: 3.3 Consensus size: 26
91163427 GACATGAAAT
*
91163437 TATTATCATGAAACATTTACCTACCC
1 TATTATCATGAAACATTTACCTAACC
*
91163463 CATTATCATGAAACATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
* *
91163489 TATTATCATGGAACATTTACATAACC
1 TATTATCATGAAACATTTACCTAACC
*
91163515 TTTTATCA
1 TATTATCA
91163523 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (26 bp):
TATTATCATGAAACATTTACCTAACC
Found at i:91168894 original size:14 final size:13
Alignment explanation
Indices: 91168787--91168894 Score: 59
Period size: 12 Copynumber: 8.5 Consensus size: 13
91168777 ATAAAAAATA
91168787 TATATAGTATTTATC
1 TATATA-TA-TTATC
* * *
91168802 TTTGTATATTATT
1 TATATATATTATC
91168815 TAT-TATATTAT-
1 TATATATATTATC
* *
91168826 TATACATTATTATA
1 TATATA-TATTATC
91168840 TAT-TATATTA-C
1 TATATATATTATC
* *
91168851 -ATACATTTTA-C
1 TATATATATTATC
91168862 TATATATATTAT-
1 TATATATATTATC
*
91168874 TTTATATATTATC
1 TATATATATTATC
91168887 TATCATAT
1 TAT-ATAT
91168895 TGTTCATATC
Statistics
Matches: 72, Mismatches: 13, Indels: 17
0.71 0.13 0.17
Matches are distributed among these distances:
10 2 0.03
11 9 0.12
12 33 0.46
13 15 0.21
14 9 0.12
15 4 0.06
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (13 bp):
TATATATATTATC
Found at i:91169237 original size:16 final size:16
Alignment explanation
Indices: 91169196--91169233 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91169186 AAATATCTTT
* *
91169196 ATTTTTATTTTATTTG
1 ATTTATATTTTATATG
91169212 ATTTATATTTTATATG
1 ATTTATATTTTATATG
91169228 -TTTATA
1 ATTTATA
91169234 ATTTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTATATTTTATATG
Found at i:91171807 original size:22 final size:22
Alignment explanation
Indices: 91171780--91171821 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
91171770 TATTTCAGTT
* *
91171780 TACAGATATTAAGTTTATTTTC
1 TACAGAAATAAAGTTTATTTTC
91171802 TACAGAAATAAAGTTTATTT
1 TACAGAAATAAAGTTTATTT
91171822 GGTTTATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (22 bp):
TACAGAAATAAAGTTTATTTTC
Found at i:91175451 original size:21 final size:21
Alignment explanation
Indices: 91175413--91175452 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91175403 GACTCCACAG
*
91175413 TCAATCAGATAGAGAAATAAT
1 TCAATCAGATAGACAAATAAT
* *
91175434 TCAATTAGATAGTCAAATA
1 TCAATCAGATAGACAAATA
91175453 GATATTGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (21 bp):
TCAATCAGATAGACAAATAAT
Found at i:91182131 original size:27 final size:27
Alignment explanation
Indices: 91182095--91182150 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
91182085 GAAAAGAAAC
91182095 AAAACTAGAAACAAACTAATTACATCA
1 AAAACTAGAAACAAACTAATTACATCA
91182122 AAAACTAGAAACAAACTAATTACATCA
1 AAAACTAGAAACAAACTAATTACATCA
91182149 AA
1 AA
91182151 GACTGAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.61, C:0.18, G:0.04, T:0.18
Consensus pattern (27 bp):
AAAACTAGAAACAAACTAATTACATCA
Found at i:91195868 original size:2 final size:2
Alignment explanation
Indices: 91195861--91195888 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91195851 ATTTAGTATG
91195861 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91195889 TACAATATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91211583 original size:17 final size:17
Alignment explanation
Indices: 91211560--91211604 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
91211550 GAAGTGTGGT
*
91211560 CGTGTGGGCCACACGGG
1 CGTGTGGGCCACACGGA
*
91211577 TGTGTGGGCCACACGGA
1 CGTGTGGGCCACACGGA
91211594 CGTGTGGGCCA
1 CGTGTGGGCCA
91211605 ATATGAGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.13, C:0.27, G:0.44, T:0.16
Consensus pattern (17 bp):
CGTGTGGGCCACACGGA
Found at i:91213289 original size:18 final size:17
Alignment explanation
Indices: 91213255--91213289 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
91213245 TTTAATTTAA
*
91213255 TTTTTAAATTTTTATGC
1 TTTTTAAATTTTAATGC
91213272 TTTTTAAATTATTAATGC
1 TTTTTAAATT-TTAATGC
91213290 CATCTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTAAATTTTAATGC
Found at i:91213788 original size:2 final size:2
Alignment explanation
Indices: 91213781--91213811 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91213771 ATTTAGTATG
91213781 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91213812 ACCAACTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91217382 original size:28 final size:28
Alignment explanation
Indices: 91217317--91217417 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
91217307 ATAGTGAATC
*
91217317 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
91217346 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91217374 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
91217404 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91217418 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91225301 original size:28 final size:28
Alignment explanation
Indices: 91225236--91225336 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
91225226 ATAGTGAATC
*
91225236 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
91225265 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91225293 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
91225323 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91225337 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91230107 original size:43 final size:43
Alignment explanation
Indices: 91230046--91230127 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
91230036 TAGTTCTTCT
*
91230046 ACTTATTTAATTTGATCATTGTATCCCAATATCATATCTTAAA
1 ACTTATTCAATTTGATCATTGTATCCCAATATCATATCTTAAA
* *
91230089 ACTTATTCAATTTGATCATTGTATCCCAATTTCGTATCT
1 ACTTATTCAATTTGATCATTGTATCCCAATATCATATCT
91230128 AAGATAATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.45
Consensus pattern (43 bp):
ACTTATTCAATTTGATCATTGTATCCCAATATCATATCTTAAA
Found at i:91238153 original size:32 final size:33
Alignment explanation
Indices: 91238117--91238189 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
91238107 GTCCCTGCCG
*
91238117 TGGTCTTACATTCACA-TGCCATAACCCAGTTA
1 TGGTCTTACATTCACATTGCCATAACCCAGCTA
** ** *
91238149 TGGTCTTATTTTCTGATTGCCATAGCCCAGCTA
1 TGGTCTTACATTCACATTGCCATAACCCAGCTA
91238182 TGGTCTTA
1 TGGTCTTA
91238190 TTCAACAGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 12 0.35
33 22 0.65
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (33 bp):
TGGTCTTACATTCACATTGCCATAACCCAGCTA
Found at i:91239421 original size:26 final size:26
Alignment explanation
Indices: 91239385--91239546 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
91239375 TGATACAAAT
91239385 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91239411 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91239437 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91239463 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91239489 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91239515 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91239541 TGATAA
1 TGATAA
91239547 GAATTTCATG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:91239475 original size:78 final size:78
Alignment explanation
Indices: 91239385--91239546 Score: 306
Period size: 78 Copynumber: 2.1 Consensus size: 78
91239375 TGATACAAAT
91239385 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
91239450 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* *
91239463 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
91239528 GGTAAATGTTTCA
66 GGTAAATGTTTCA
91239541 TGATAA
1 TGATAA
91239547 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:91240746 original size:16 final size:15
Alignment explanation
Indices: 91240720--91240749 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91240710 ACTAGATTGG
91240720 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
91240735 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
91240750 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:91242297 original size:29 final size:29
Alignment explanation
Indices: 91242262--91242335 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
91242252 GTTGTGAGAT
91242262 TGGCACTAAGTGTGC-AGGCTTGAAA-TGA-A
1 TGGCACTAAGTGTGCGA-G-TTGAAAGT-ACA
*
91242291 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
91242320 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91242336 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
28 6 0.15
29 34 0.83
30 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:91245431 original size:39 final size:39
Alignment explanation
Indices: 91245351--91245505 Score: 255
Period size: 39 Copynumber: 4.1 Consensus size: 39
91245341 TATGCAAACA
*
91245351 TGGAAATGTATCCGGGCTAAAGT---GCA-GCTTCATGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
91245386 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
91245425 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
* *
91245464 TGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
91245503 TGG
1 TGG
91245506 TGCTGGTAAT
Statistics
Matches: 113, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
35 23 0.20
38 3 0.03
39 87 0.77
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
Found at i:91251098 original size:39 final size:39
Alignment explanation
Indices: 91251053--91251173 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
91251043 ATGCAAGACA
91251053 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
91251092 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
91251131 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
91251170 CTGG
1 CTGG
91251174 TGCTGGTAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:91256827 original size:39 final size:38
Alignment explanation
Indices: 91256712--91256830 Score: 177
Period size: 38 Copynumber: 3.1 Consensus size: 38
91256702 ATGCAAGACA
*
91256712 CTGGAAATGTATCCGGGCTAAAGTCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGCCCGCAGGCTTCGTG
91256750 CTGGAAATGTATCCGGGCT-AAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAG-CCCGCAGGCTTCGTG
* * *
91256788 CTGGAAATTTGTTCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAG-CCCGCAGGCTTCGTG
91256827 CTGG
1 CTGG
91256831 TGCTGGTAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
37 3 0.04
38 49 0.66
39 22 0.30
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (38 bp):
CTGGAAATGTATCCGGGCTAAAGCCCGCAGGCTTCGTG
Found at i:91259057 original size:137 final size:138
Alignment explanation
Indices: 91258888--91259220 Score: 321
Period size: 137 Copynumber: 2.4 Consensus size: 138
91258878 TTCCTAGTTG
** ** * * **
91258888 TCATACTAAGGCTCGTAGGCAAAAAGCCGCAGCCTCCAACACAGTTAGCGAGA-CTAAAGTTCCC
1 TCATACTAAGGCTCACAGGTGAAGAGCCGCAGCCTCCAACACAGTTAACGAGAGC-AAAACTCCC
* * * ** * * *
91258952 AGCTGTCATATTAAGGCTCGCAGGTGAAGAGGTACAGCCTCTAACACAGTTAGTAAGAACAAAGC
65 AGCTGCCATACTAAGGCTCGCAAGCAAAGAGGTACAACCTCCAACACAGTTAGCAAGAACAAAGC
91259017 TC-CAACTA
130 TCTCAACTA
* * * *
91259025 TCATACTAAGGCTCACAGGTGAAGAGCTGCAGCCTTCAACACTGTTAACGAGAGCAAAACTCTCA
1 TCATACTAAGGCTCACAGGTGAAGAGCCGCAGCCTCCAACACAGTTAACGAGAGCAAAACTCCCA
* * * * * *
91259090 TCTGCCATACTAAGGCTTGTAAGCAAAGAGTTGCAACCTCCAACACAGTTAGCAAGAGCAAAGCT
66 GCTGCCATACTAAGGCTCGCAAGCAAAGAGGTACAACCTCCAACACAGTTAGCAAGAACAAAGCT
*
91259155 CTCAAGTA
131 CTCAACTA
* ** * * * *
91259163 TCATACTAAGGCT-AGCAGATGAAGAGCCATAGACTCCAATATAGTTAACAAGAGCAAA
1 TCATACTAAGGCTCA-CAGGTGAAGAGCCGCAGCCTCCAACACAGTTAACGAGAGCAAA
91259221 GCTCTCAACT
Statistics
Matches: 156, Mismatches: 37, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
137 104 0.67
138 52 0.33
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (138 bp):
TCATACTAAGGCTCACAGGTGAAGAGCCGCAGCCTCCAACACAGTTAACGAGAGCAAAACTCCCA
GCTGCCATACTAAGGCTCGCAAGCAAAGAGGTACAACCTCCAACACAGTTAGCAAGAACAAAGCT
CTCAACTA
Found at i:91259172 original size:69 final size:68
Alignment explanation
Indices: 91258655--91259180 Score: 313
Period size: 69 Copynumber: 7.6 Consensus size: 68
91258645 AGTGTTACAT
* * * * *
91258655 AGTTAGCGAGAGCAAAGCTCCCAACTGTCATACTAAGGCTCGCAGGCAAAGATCCGTAGCC-CCT
1 AGTTAGCAAGAGCAAAGCT-CCAAGTGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCC-
* *
91258719 AGCAT
64 AACAC
* * * * * * * ** *
91258724 AGTTAGCGAGAGCAAAGCTCCCAGCTTTCATAGTAAAGCTCACAGGCGAAGAGCCACAGCCTCTA
1 AGTTAGCAAGAGCAAAGCTCCAAG-TGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCCA
*
91258789 ATAC
65 ACAC
** ***** * * * * * *
91258793 AGTTAGTGAGAGTTTTTCTTCC--GTTGTCATAGTAAGGCTCGTATGCAAATAGCTGTAGTCTCC
1 AGTTAGCAAGAGCAAAGC-TCCAAG-TGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCC
91258856 AACAC
64 AACAC
* * * * * * *
91258861 AATTAGCAAGAGTAAAGTTCCTAGTTGTCATACTAAGGCTCGTAGGCAAAAAGCCGCAGCCTCCA
1 AGTTAGCAAGAGCAAAGCTCCAAG-TGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCCA
91258926 ACAC
65 ACAC
* * * * ** * * *
91258930 AGTTAGCGAGA-CTAAAGTTCCCAGCTGTCATATTAAGGCTCGCAGGTGAAGAGGTACAGCCTCT
1 AGTTAGCAAGAGC-AAAGCTCCAAG-TGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCC
91258994 AACAC
64 AACAC
* * * * * ** *
91258999 AGTTAGTAAGAACAAAGCTCCAACTATCATACTAAGGCTCACAGGTGAAGAGCTGCAGCCTTCAA
1 AGTTAGCAAGAGCAAAGCTCCAAGTGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCCAA
91259064 CAC
66 CAC
* * * * ** * * * * * *
91259067 TGTTAACGAGAGCAAAACTCTCATCTGCCATACTAAGGCTTGTAAGCAAAGAGTTGCAACCTCCA
1 AGTTAGCAAGAGCAAAGCTC-CAAGTGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCCA
91259132 ACAC
65 ACAC
* *
91259136 AGTTAGCAAGAGCAAAGCTCTCAAGTATCATACTAAGGCTAGCAG
1 AGTTAGCAAGAGCAAAGCTC-CAAGTGTCATACTAAGGCTCGCAG
91259181 ATGAAGAGCC
Statistics
Matches: 346, Mismatches: 103, Indels: 16
0.74 0.22 0.03
Matches are distributed among these distances:
67 3 0.01
68 96 0.28
69 242 0.70
70 5 0.01
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (68 bp):
AGTTAGCAAGAGCAAAGCTCCAAGTGTCATACTAAGGCTCGCAGGCAAAGAGCTGCAGCCTCCAA
CAC
Found at i:91259188 original size:69 final size:68
Alignment explanation
Indices: 91258920--91259230 Score: 220
Period size: 69 Copynumber: 4.5 Consensus size: 68
91258910 AAAGCCGCAG
* * * * * * * *
91258920 CCTCCAACACAGTTAGCGAGA-CTAAAGTTCCCAGCTGTCATATTAAGGCTCGCAGGTGAAGAGG
1 CCTCCAACACAGTTAGCAAGAGC-AAAGCTCTCAACTATCATACTAAGGCTAGCAGATGAAGA-G
* *
91258984 TACAG
64 TGCAA
* * * *
91258989 CCTCTAACACAGTTAGTAAGAACAAAGCTC-CAACTATCATACTAAGGCTCA-CAGGTGAAGAGC
1 CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAACTATCATACTAAGGCT-AGCAGATGAAGAG-
*
91259052 TGCAG
64 TGCAA
* * * * * * ** * *
91259057 CCTTCAACACTGTTAACGAGAGCAAAACTCTCATCTGCCATACTAAGGCTTGTA-A-GCAAAGAG
1 CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAACTATCATACTAAGGCTAGCAGATG--AAGAG
91259120 TTGCAA
64 -TGCAA
* *
91259126 CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAAGTATCATACTAAGGCTAGCAGATGAAGAG-C
1 CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAACTATCATACTAAGGCTAGCAGATGAAGAGTG
91259190 CATA
66 CA-A
* * * *
91259194 GACTCCAATATAGTTAACAAGAGCAAAGCTCTCAACT
1 -CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAACT
91259231 GATTATCTTT
Statistics
Matches: 189, Mismatches: 42, Indels: 22
0.75 0.17 0.09
Matches are distributed among these distances:
67 4 0.02
68 53 0.28
69 129 0.68
70 2 0.01
71 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (68 bp):
CCTCCAACACAGTTAGCAAGAGCAAAGCTCTCAACTATCATACTAAGGCTAGCAGATGAAGAGTG
CAA
Found at i:91266075 original size:64 final size:64
Alignment explanation
Indices: 91266002--91266218 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
91265992 CTAGGCCAGA
* *
91266002 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
91266066 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
91266128 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
91266138 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
91266202 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
91266219 TGCAACATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:91266212 original size:136 final size:136
Alignment explanation
Indices: 91265968--91266252 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
91265958 TATTGGGCCT
**
91265968 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
91266033 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
91266098 ATATGC
131 ATATGC
* *
91266104 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
91266169 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
91266234 ATATGC
131 ATATGC
91266240 AAGCCCATTTGGG
1 AAGCCCATTTGGG
91266253 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:91266288 original size:21 final size:21
Alignment explanation
Indices: 91266259--91266306 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
91266249 TGGGGAGACT
*
91266259 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
91266280 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
91266301 ACTCCA
1 ACTCCA
91266307 TATGAGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Done.