Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 301 of 378
Found at i:91268065 original size:26 final size:26
Alignment explanation
Indices: 91268029--91268164 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
91268019 CATGAGATTC
91268029 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91268055 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91268081 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91268107 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91268133 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91268159 TTATCA
1 TTATCA
91268165 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91280565 original size:44 final size:45
Alignment explanation
Indices: 91280504--91280611 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 45
91280494 TGCTCTACTA
* * * *
91280504 CAACTTC-AGAGAGATAAGGATTA-TGGTTTCGATCTACTCCACTG
1 CAACTTCAAG-GAGATAAGGATCAGTGATTTCAACCTACTCCACTG
* * *
91280548 CAACTTCAAGGAAATAAGAATCAGTGATTTCAACCTGCTCCACTG
1 CAACTTCAAGGAGATAAGGATCAGTGATTTCAACCTACTCCACTG
91280593 CAA-TCTCAAGGAGATAAGG
1 CAACT-TCAAGGAGATAAGG
91280612 CTGGTGACTT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
44 18 0.35
45 34 0.65
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (45 bp):
CAACTTCAAGGAGATAAGGATCAGTGATTTCAACCTACTCCACTG
Found at i:91281077 original size:177 final size:176
Alignment explanation
Indices: 91280776--91281096 Score: 373
Period size: 177 Copynumber: 1.8 Consensus size: 176
91280766 TCTTGCTACC
91280776 TTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCCATACATGGAGATAAGATTCACCA
1 TTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCCATACATGGAGATAAGATTCACCA
** * * * * ** * *
91280841 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATTCGTATTTTTCAGTATGCTCCATTGTA
66 TCTTCGATCTGCTCCACTACACCTCAGAGAAATAAGACTCGTA-TCTTCAACATGCTCCACTGCA
91280906 ATCTT-AGGGAGATAATACTTGTATATTGAGCTTGCTCCACTGCAACT
130 A-CTTCAGGGAGATAATACTTGTATATTGAGCTTGCTCCACTGCAACT
* * **
91280953 TTAGGGAGATAAGGCTTA-TGGCTTAAATCTGCTCCATTG-CCTATACATGGAGATAAGATTTGC
1 TTAGAGAGATAAGGC-TAGTGGCTAAAATCTGCTCCATTGTCC-ATACATGGAGATAAGATTCAC
* * * * *
91281016 CGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGAC-CTGTCA-CTTCAACCTGCTCCAC
64 CATCTTCGATCTGCTCCACTAC-ACCTCAGAGAAATAAGACTC-GT-ATCTTCAACATGCTCCAC
91281079 TGCAACTTCAGGGAGATA
126 TGCAACTTCAGGGAGATA
91281097 GGGCTTGCTA
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
176 5 0.04
177 97 0.82
178 16 0.13
179 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (176 bp):
TTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCCATACATGGAGATAAGATTCACCA
TCTTCGATCTGCTCCACTACACCTCAGAGAAATAAGACTCGTATCTTCAACATGCTCCACTGCAA
CTTCAGGGAGATAATACTTGTATATTGAGCTTGCTCCACTGCAACT
Found at i:91281200 original size:226 final size:226
Alignment explanation
Indices: 91280941--91281417 Score: 828
Period size: 226 Copynumber: 2.1 Consensus size: 226
91280931 TTGAGCTTGC
* * * *
91280941 TCCACTGCAACTTTAGGGAGATAAGGCTTATGGCTTAAATCTGCTCCATTGCCTATACATGGAGA
1 TCCACTGCAACTTCAGGGAAATAAGGCTTATGGCTTAAATCTGCTCCATTGCCGATACATGAAGA
91281006 TAAGATTTGCCGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGACCTGTCACTTCAACC
66 TAAGATTTGCCGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGACCTGTCACTTCAACC
*
91281071 TGCTCCACTGCAACTTCAGGGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGA
131 TGCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGA
91281136 TAAGATCTGTTTATTTATAGCTTCAATCTGT
196 TAAGATCTGTTTATTTATAGCTTCAATCTGT
91281167 TCCACTGCAACTTCAGGGAAATAAGGCTTATGGCTTAAATCTGCTCCATTGCCGATACATGAAGA
1 TCCACTGCAACTTCAGGGAAATAAGGCTTATGGCTTAAATCTGCTCCATTGCCGATACATGAAGA
* * * *
91281232 TAAGATTTGCTGTCTTTGGTCTGCTCCACTGCAACCTCAGGGAAATAAGACCTGTCATTTTAACC
66 TAAGATTTGCCGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGACCTGTCACTTCAACC
* * * * *
91281297 TGCTTCACTGCAACTTTAGAGAGATAGGGTTTGCTATGATCTGCTCTACTGCAATTTCAAAGAGA
131 TGCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGA
91281362 TAAGATCTGTTTATTTATAGCTTCAATCTGT
196 TAAGATCTGTTTATTTATAGCTTCAATCTGT
91281393 TCCACTGCAACTTCAGGGAAATAAG
1 TCCACTGCAACTTCAGGGAAATAAG
91281418 ATTCGCTATC
Statistics
Matches: 237, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
226 237 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (226 bp):
TCCACTGCAACTTCAGGGAAATAAGGCTTATGGCTTAAATCTGCTCCATTGCCGATACATGAAGA
TAAGATTTGCCGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGACCTGTCACTTCAACC
TGCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGA
TAAGATCTGTTTATTTATAGCTTCAATCTGT
Found at i:91281447 original size:45 final size:43
Alignment explanation
Indices: 91281382--91281510 Score: 129
Period size: 45 Copynumber: 3.0 Consensus size: 43
91281372 TTATTTATAG
* * *
91281382 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCG-CTA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTC-A
* * *
91281426 TCTTCAGTCTGCTCGACTGCAACTTCAAGGAGATAAGGCTTGTCA
1 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGTCA
*
91281471 CTTCAG-CTTGCTCTACTGCAACTTCAGGGAGATAAG-TTGT
1 CTTCAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGATTGT
91281511 GAATTCACCG
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 4 0.05
43 2 0.03
44 31 0.42
45 32 0.44
46 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTCA
Found at i:91281491 original size:226 final size:225
Alignment explanation
Indices: 91280941--91281506 Score: 685
Period size: 226 Copynumber: 2.5 Consensus size: 225
91280931 TTGAGCTTGC
* * * * * *
91280941 TCCACTGCAACTTTAGGGAGATAAGGCTTATGGCTTAAATCTGCTCCATTGCCTATACATGGAGA
1 TCCACTGCAACTTCAGGGAAATAAGGCTTAT-GCTTAAATCTGCTCCACTGCCAATACAAGAAGA
* * * * *
91281006 TAAGATTTGC-CGTCTTTGGTCTGCTCCACTACAACCTCAGGGAAATAAGACCTGTCACTTCAAC
65 TAAGACTTGCTC-ACTTAGCTCTGCTCCACTGCAACCTCAGGGAAATAAGACCTGTCACTTCAAC
*
91281070 CTGCTCCACTGCAACTTCAGGGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAG
129 CTGCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAG
91281135 ATAAGATCTGTTTATTTATAGCTTCAATCTGT
194 ATAAGATCTGTTTATTTATAGCTTCAATCTGT
* * *
91281167 TCCACTGCAACTTCAGGGAAATAAGGCTTATGGCTTAAATCTGCTCCATTGCCGATACATGAAGA
1 TCCACTGCAACTTCAGGGAAATAAGGCTTAT-GCTTAAATCTGCTCCACTGCCAATACAAGAAGA
* ** * * * *
91281232 TAAGATTTGCTGTCTTTGGTCTGCTCCACTGCAACCTCAGGGAAATAAGACCTGTCATTTTAACC
65 TAAGACTTGCTCACTTAGCTCTGCTCCACTGCAACCTCAGGGAAATAAGACCTGTCACTTCAACC
* * * * *
91281297 TGCTTCACTGCAACTTTAGAGAGATAGGGTTTGCTATGATCTGCTCTACTGCAATTTCAAAGAGA
130 TGCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGA
91281362 TAAGATCTGTTTATTTATAGCTTCAATCTGT
195 TAAGATCTGTTTATTTATAGCTTCAATCTGT
* * * *
91281393 TCCACTGCAACTTCAGGGAAATAAGATTCGC-TAT-CTTCAGTCTGCTCGACTG-CAACTTCAAG
1 TCCACTGCAACTTCAGGGAAATAAG----GCTTATGCTTAAATCTGCTCCACTGCCAA-TACAAG
* * * * *
91281455 GAGATAAGGCTTG-TCACTTCAGCT-TGCTCTACTGCAACTTCAGGGAGATAAG
61 AAGATAAGACTTGCTCACTT-AGCTCTGCTCCACTGCAACCTCAGGGAAATAAG
91281507 TTGTGAATTC
Statistics
Matches: 302, Mismatches: 31, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
226 267 0.88
227 30 0.10
229 3 0.01
230 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (225 bp):
TCCACTGCAACTTCAGGGAAATAAGGCTTATGCTTAAATCTGCTCCACTGCCAATACAAGAAGAT
AAGACTTGCTCACTTAGCTCTGCTCCACTGCAACCTCAGGGAAATAAGACCTGTCACTTCAACCT
GCTCCACTGCAACTTCAGAGAGATAGGGCTTGCTATGATATGCTCTACTGCAACTTCAAAGAGAT
AAGATCTGTTTATTTATAGCTTCAATCTGT
Found at i:91283311 original size:12 final size:11
Alignment explanation
Indices: 91283294--91283349 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
91283284 TGTTTTATTG
91283294 TTTTTCTCTTTT
1 TTTTTCT-TTTT
91283306 TTTTTCTTTTT
1 TTTTTCTTTTT
*
91283317 TTCTTT-GTTTT
1 TT-TTTCTTTTT
* * *
91283328 TTGTACTTTTA
1 TTTTTCTTTTT
91283339 TTTTTCTTTTT
1 TTTTTCTTTTT
91283350 GGTTGCCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
10 1 0.03
11 23 0.68
12 10 0.29
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.82
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:91283317 original size:20 final size:22
Alignment explanation
Indices: 91283294--91283349 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
91283284 TGTTTTATTG
91283294 TTTTTCTCTTTTTTTT-T-CTT
1 TTTTTCTCTTTTTTTTGTACTT
91283314 TTTTTCT-TTGTTTTTTGTACTT
1 TTTTTCTCTT-TTTTTTGTACTT
*
91283336 TTATTTTTCTTTTT
1 TT-TTTCTCTTTTT
91283350 GGTTGCCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 2 0.07
20 13 0.43
21 1 0.03
22 5 0.17
23 7 0.23
24 2 0.07
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.82
Consensus pattern (22 bp):
TTTTTCTCTTTTTTTTGTACTT
Found at i:91283327 original size:18 final size:19
Alignment explanation
Indices: 91283281--91283331 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
91283271 TCACTATGAC
91283281 CTTTGTTTTATTGTTTTTCT
1 CTTTGTTTT-TTGTTTTTCT
* *
91283301 CTTT-TTTTTTCTTTTTTT
1 CTTTGTTTTTTGTTTTTCT
91283319 CTTTGTTTTTTGT
1 CTTTGTTTTTTGT
91283332 ACTTTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 12 0.44
19 11 0.41
20 4 0.15
ACGTcount: A:0.02, C:0.10, G:0.08, T:0.80
Consensus pattern (19 bp):
CTTTGTTTTTTGTTTTTCT
Found at i:91286146 original size:19 final size:19
Alignment explanation
Indices: 91286122--91286161 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
91286112 TAGAACAACT
91286122 TTCCTAGAAAACAAATTCC
1 TTCCTAGAAAACAAATTCC
*
91286141 TTCCTAGAAAATAAATTCC
1 TTCCTAGAAAACAAATTCC
91286160 TT
1 TT
91286162 TACATAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (19 bp):
TTCCTAGAAAACAAATTCC
Found at i:91288349 original size:22 final size:21
Alignment explanation
Indices: 91288294--91288372 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 21
91288284 AGTAATATGC
* *
91288294 AAAATAATATGCATTAATTTAA
1 AAAATAATATACATAAATTT-A
91288316 ACAAATAATATACATAAATTTTA
1 A-AAATAATATACATAAA-TTTA
* *
91288339 AAATTAATATAAATAACATGTATAA
1 AAAATAATATACATAA-AT-T-T-A
91288364 AAAATAATA
1 AAAATAATA
91288373 AAGTATAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 15 0.33
23 18 0.39
24 4 0.09
25 9 0.20
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAATAATATACATAAATTTA
Found at i:91289529 original size:20 final size:20
Alignment explanation
Indices: 91289504--91289546 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
91289494 AAAAATACAA
91289504 TTTGTT-TTCGTCCTCTTTT-T
1 TTTGTTGTT-GTCC-CTTTTGT
91289524 TTTGTTGTTGTCCCTTTTGT
1 TTTGTTGTTGTCCCTTTTGT
91289544 TTT
1 TTT
91289547 CTTGCAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.24
20 14 0.67
21 2 0.10
ACGTcount: A:0.00, C:0.16, G:0.14, T:0.70
Consensus pattern (20 bp):
TTTGTTGTTGTCCCTTTTGT
Found at i:91292101 original size:49 final size:49
Alignment explanation
Indices: 91291862--91292101 Score: 259
Period size: 49 Copynumber: 4.8 Consensus size: 49
91291852 TCTATTGTAA
* **
91291862 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATTGAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
* *
91291911 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG-ATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GAATAA--TT
* * * * * * **
91291962 GATCACGTGTGTAGTACTAATTGCAGGCAACTACGTGTATC-AGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGA-ATAATT
* * *
91292011 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
* *
91292061 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
91292102 AGATAGCTTT
Statistics
Matches: 157, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 78 0.50
50 41 0.26
51 38 0.24
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
Found at i:91292137 original size:150 final size:150
Alignment explanation
Indices: 91291861--91292143 Score: 428
Period size: 150 Copynumber: 1.9 Consensus size: 150
91291851 ATCTATTGTA
* * **
91291861 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATTGAATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
* * * *
91291926 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACGTGTGTAGTACTAATTGCAGGCA
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAATTGCAGGCA
91291991 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
91292011 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
* *
91292076 ACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG-A-AAAT-ATGTGCAG
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTT-GAT-CAAGTGTGTAGAAATAAT-TGCAG
91292138 GCAACT
128 GCAACT
91292144 GAGTATCAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
149 2 0.02
150 108 0.90
151 3 0.03
152 7 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAATTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:91295230 original size:20 final size:20
Alignment explanation
Indices: 91295205--91295249 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91295195 ATAAAATTTA
*
91295205 AAAATTTAGTTTCATGTATT
1 AAAATTTAGTTTCATGTAAT
* *
91295225 AAAATTTATTTTCATTTAAT
1 AAAATTTAGTTTCATGTAAT
91295245 AAAAT
1 AAAAT
91295250 ATAATTAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (20 bp):
AAAATTTAGTTTCATGTAAT
Found at i:91296231 original size:22 final size:21
Alignment explanation
Indices: 91296188--91296231 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
91296178 AGTTATAAAT
* **
91296188 AATTAAAAATTATTTCTTTTA
1 AATTAAAAATTATGTCACTTA
91296209 AATTCAAAAATTATGTCACTTA
1 AATT-AAAAATTATGTCACTTA
91296231 A
1 A
91296232 TTATCAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.43
Consensus pattern (21 bp):
AATTAAAAATTATGTCACTTA
Found at i:91301872 original size:40 final size:39
Alignment explanation
Indices: 91301827--91302034 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
91301817 CGGAATACAA
*
91301827 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91301867 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91301907 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
91301947 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
91301987 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
91302027 CCGGATAT
1 CCGGATAT
91302035 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:91301967 original size:80 final size:80
Alignment explanation
Indices: 91301827--91302033 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
91301817 CGGAATACAA
* * *
91301827 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
91301891 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
91301907 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
91301971 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
91301987 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
91302034 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:91309914 original size:40 final size:39
Alignment explanation
Indices: 91309869--91310076 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
91309859 CGGAATACAA
*
91309869 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91309909 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91309949 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
91309989 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
91310029 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
91310069 CCGGATAT
1 CCGGATAT
91310077 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:91310009 original size:80 final size:80
Alignment explanation
Indices: 91309869--91310075 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
91309859 CGGAATACAA
* * *
91309869 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
91309933 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
91309949 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
91310013 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
91310029 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
91310076 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:91313285 original size:51 final size:51
Alignment explanation
Indices: 91313225--91313444 Score: 261
Period size: 51 Copynumber: 4.4 Consensus size: 51
91313215 CGGTGACCTG
*
91313225 CACATAGTACCATC-CTTGTAATCAAAGCTACCTTCTTTACAAAGTGGCCTT
1 CACATAGTACCA-CACTTGTAATCAAAGCTACCTTCTTCACAAAGTGGCCTT
*
91313276 CACATAGTACCATC-CTTGTAATCAAAGCTACCTTCTTCACAAAATGGCC-T
1 CACATAGTACCA-CACTTGTAATCAAAGCTACCTTCTTCACAAAGTGGCCTT
* * * * * *
91313326 CACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCATAAACTGGCCTT
1 CACATAGTACCACACTTGTAATCAAAGCTA-CCTTCTTCACAAAGTGGCCTT
* * * * *
91313378 CACATGGTACCACACTTGTGA-CCAAGCTATC-TCTTCCCAAAGTGGCCTT
1 CACATAGTACCACACTTGTAATCAAAGCTACCTTCTTCACAAAGTGGCCTT
91313427 CACATAGTACCACACTTG
1 CACATAGTACCACACTTG
91313445 AGTCACTAGT
Statistics
Matches: 149, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
49 33 0.22
50 26 0.17
51 70 0.47
52 20 0.13
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (51 bp):
CACATAGTACCACACTTGTAATCAAAGCTACCTTCTTCACAAAGTGGCCTT
Found at i:91313405 original size:101 final size:101
Alignment explanation
Indices: 91313225--91313444 Score: 259
Period size: 101 Copynumber: 2.2 Consensus size: 101
91313215 CGGTGACCTG
* * *
91313225 CACATAGTACCATC-CTTGTAATCAAAGCTACCTTCTTTACAAAGTGGCCTTCACATAGTACCAT
1 CACATAGTACCA-CACTTGTAACCAAAGCTACCTTCTTCACAAACTGGCCTTCACATAGTACCAT
91313289 CCTTGTAATCAAAGCTACCTTCTTCACAAAATGGCC-T
65 CCTTGTAATCAAAGCTACC-TCTTCACAAAATGGCCTT
* * * * *
91313326 CACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCATAAACTGGCCTTCACATGGTACCA-
1 CACATAGTACCACACTTGTAACCAAAGCTA-CCTTCTTCACAAACTGGCCTTCACATAGTACCAT
* * * * *
91313390 CACTTGTGA-CCAAGCTATCTCTTCCCAAAGTGGCCTT
65 C-CTTGTAATCAAAGCTACCTCTTCACAAAATGGCCTT
91313427 CACATAGTACCACACTTG
1 CACATAGTACCACACTTG
91313445 AGTCACTAGT
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
100 15 0.15
101 52 0.51
102 34 0.34
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (101 bp):
CACATAGTACCACACTTGTAACCAAAGCTACCTTCTTCACAAACTGGCCTTCACATAGTACCATC
CTTGTAATCAAAGCTACCTCTTCACAAAATGGCCTT
Found at i:91324233 original size:40 final size:40
Alignment explanation
Indices: 91324178--91324395 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
91324168 TGGATGGTAA
* *
91324178 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
91324218 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91324258 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
91324298 CTGGGCTAAGTCCCGAAGGCATTAGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91324338 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
91324378 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
91324396 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:91327004 original size:52 final size:51
Alignment explanation
Indices: 91326886--91327063 Score: 238
Period size: 52 Copynumber: 3.5 Consensus size: 51
91326876 TGGATACCCG
* * *
91326886 GTGG-CTTGCACATAGTACCATC-CTTGTAATCAAAGCTACCTTCTTCACAAA
1 GTGGCCTT-CACATAGTACCA-CACTTGTGACCAAAGCTATCTTCTTCACAAA
* *
91326937 GTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
91326989 TTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TCTTCCCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
91327038 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
91327064 AGTCACTAGT
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 33 0.29
50 1 0.01
51 38 0.33
52 42 0.37
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:91333007 original size:93 final size:93
Alignment explanation
Indices: 91332895--91333066 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91332885 GCCCATAAGT
* *
91332895 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91332960 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91332988 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91333053 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
91333067 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91333062 original size:46 final size:46
Alignment explanation
Indices: 91332887--91333062 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
91332877 TGTAACCCGC
* * *
91332887 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91332933 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
91332983 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91333026 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91333063 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91335489 original size:30 final size:30
Alignment explanation
Indices: 91335445--91335533 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
91335435 CAAAGATAAC
91335445 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
91335474 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
91335504 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
91335534 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:91335493 original size:15 final size:15
Alignment explanation
Indices: 91335445--91335524 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
91335435 CAAAGATAAC
*
91335445 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
91335459 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
91335474 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
91335489 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
91335504 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
91335519 AAGAAA
1 AAGAAA
91335525 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:91335533 original size:15 final size:15
Alignment explanation
Indices: 91335456--91335533 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
91335446 AGAAAACCGA
91335456 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
91335471 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
91335485 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
91335500 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
91335516 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
91335531 ATA
1 ATA
91335534 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91338542 original size:46 final size:46
Alignment explanation
Indices: 91338475--91338647 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
91338465 TGTAACCCGC
*
91338475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
91338521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
91338571 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC--TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
91338612 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
91338648 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 1 0.01
43 2 0.02
44 29 0.26
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:91338640 original size:91 final size:92
Alignment explanation
Indices: 91338483--91338652 Score: 306
Period size: 91 Copynumber: 1.8 Consensus size: 92
91338473 GCCCATAAGT
*
91338483 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
91338548 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91338576 GAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
91338640 GAGTTCGGATGCC
66 GAGTTCGGATGCC
91338653 CAAATATCCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91342364 original size:29 final size:29
Alignment explanation
Indices: 91342322--91342435 Score: 167
Period size: 29 Copynumber: 4.0 Consensus size: 29
91342312 AAAAGCATGT
91342322 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
91342351 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
91342380 ATACGAATGTGATTTGGGTCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
91342409 ATATGAATGAGA-GTGGGCCTAGTGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
91342436 TTAGTGGGCC
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 12 0.16
29 65 0.84
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:91349536 original size:12 final size:12
Alignment explanation
Indices: 91349519--91349544 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91349509 ACATGTTGAA
91349519 TTTTAATTAATT
1 TTTTAATTAATT
91349531 TTTTAATTAATT
1 TTTTAATTAATT
91349543 TT
1 TT
91349545 GATGAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTAATTAATT
Found at i:91352359 original size:15 final size:15
Alignment explanation
Indices: 91352339--91352375 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
91352329 GTCGTTTTGC
91352339 TTAAAACAATAAGCT
1 TTAAAACAATAAGCT
91352354 TTAAAACAATAAGCT
1 TTAAAACAATAAGCT
91352369 TTAAAAC
1 TTAAAAC
91352376 GGCGTCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (15 bp):
TTAAAACAATAAGCT
Found at i:91353245 original size:19 final size:18
Alignment explanation
Indices: 91353223--91353267 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
91353213 TGTTTACAAT
*
91353223 TTTTTTATTTATTTTTGTA
1 TTTTTTATTT-TTTTAGTA
91353242 TTTTTTATTTTTTTAGTA
1 TTTTTTATTTTTTTAGTA
91353260 TTGTTTTA
1 TT-TTTTA
91353268 GTAGGTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.78
Consensus pattern (18 bp):
TTTTTTATTTTTTTAGTA
Found at i:91365061 original size:44 final size:44
Alignment explanation
Indices: 91364976--91365244 Score: 379
Period size: 44 Copynumber: 6.2 Consensus size: 44
91364966 GTAGATCACC
* *
91364976 GATAGCAGATTTGGCGTCTC-----TGTCAGAGAGTAGATTGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
91365015 GATAGTAGATTTGACGTCTCTGTATTATCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
*
91365059 GATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
91365103 GATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
91365147 GATAGAAAAATTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
*
91365191 GATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGA-CTGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-GAA
91365235 GATAGCAGAT
1 GATAGCAGAT
91365245 CGAAGATAGT
Statistics
Matches: 203, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 18 0.09
43 1 0.00
44 184 0.91
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
Found at i:91365125 original size:88 final size:88
Alignment explanation
Indices: 91364976--91365468 Score: 401
Period size: 88 Copynumber: 5.5 Consensus size: 88
91364966 GTAGATCACC
* * *
91364976 GATAGCAGATTTGGCGTCTC-----TGTCAGAGAGTAGATTGAAGATAGTAGATTTGACGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCT
*
91365036 GTATTATCAGAGAGCAGATCGAA
66 GTATTGTCAGAGAGCAGATCGAA
* * *
91365059 GATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCT
*
91365124 GTATTGTCAGAGAGCAGATCAAA
66 GTATTGTCAGAGAGCAGATCGAA
* * * *
91365147 GATAGAAAAATTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCT
*
91365212 GTATTGTAAGAGAGCAGA-CTGAA
66 GTATTGTCAGAGAGCAGATC-GAA
* * * * *** * * ** ** * *
91365235 GATAGCAGA-TCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCA-AAGATAA
1 GATAGCAGATTTG--G--CGT--CTCTGTATTGTCAG-AGAG-CAGATCGAAGAT-AGCAGAT--
* * * *
91365298 TAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATCGAA
55 TTGA--CGTC-TCTGT--ATTGTCAGAGAGCAGATCGAA
* * * *
91365337 GATAGTAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATTTGACGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCT
*
91365402 GTATTGTCAGAGAGCAAGATCGAG
66 GTATTGTCAGAGAGC-AGATCGAA
* * *
91365426 GGTAGCGGATTTGGTGTCT-TGTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
91365469 CATTTCGGCT
Statistics
Matches: 315, Mismatches: 69, Indels: 47
0.73 0.16 0.11
Matches are distributed among these distances:
83 20 0.06
87 3 0.01
88 176 0.56
89 22 0.07
90 4 0.01
91 4 0.01
93 10 0.03
94 3 0.01
95 24 0.08
96 3 0.01
97 9 0.03
99 3 0.01
100 4 0.01
101 1 0.00
102 26 0.08
103 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (88 bp):
GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCT
GTATTGTCAGAGAGCAGATCGAA
Found at i:91365200 original size:132 final size:132
Alignment explanation
Indices: 91364976--91365468 Score: 577
Period size: 132 Copynumber: 3.7 Consensus size: 132
91364966 GTAGATCACC
* ** *
91364976 GATAGCAGATTTGGCGTCTC-----TGTCAGAGAGTAGATTGAAGATAGTAGATTTGACGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAGATTTGACGTCTCT
*
91365036 GTATTATCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCG
66 GTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCG
91365101 AA
131 AA
* * * *
91365103 GATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAAAATTGGCGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAGATTTGACGTCTCT
91365168 GTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGACTG
66 GTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGT--------A-A--G
91365233 AAGATAGCAGATCGAA
120 -AG--AGCAGATCGAA
* *
91365249 GATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCAAAGATA-ATAGATTTGACGTCTC
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGA-AGATTTGACGTCTC
* * * *
91365313 TGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAGAGAGCAAATC
65 TGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATC
*
91365378 AAA
130 GAA
* * * * ** **
91365381 GATAGCAGATTTGACGTCTCTGTATTGTCAGAGAGCAAGATCGAGGGTAGCGGATTTGGTGTCT-
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC-AGATCAAAGATAGAAGATTTGACGTCTC
91365445 TGTATTGTCAGAGAGCAGATCGAA
65 TGTATTGTCAGAGAGCAGATCGAA
91365469 CATTTCGGCT
Statistics
Matches: 314, Mismatches: 30, Indels: 39
0.82 0.08 0.10
Matches are distributed among these distances:
127 19 0.06
132 149 0.47
133 19 0.06
134 2 0.01
135 1 0.00
137 1 0.00
140 1 0.00
141 1 0.00
143 1 0.00
144 2 0.01
145 1 0.00
146 117 0.37
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (132 bp):
GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAGATTTGACGTCTCT
GTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCG
AA
Found at i:91365281 original size:102 final size:95
Alignment explanation
Indices: 91364996--91365420 Score: 442
Period size: 88 Copynumber: 4.6 Consensus size: 95
91364986 TTGGCGTCTC
* ** * *
91364996 TGTCAGAGAGTAGATTGAAGATAGTAGATTTGACGTCTCTGTA-T-T----ATC-AGAGAGCAGA
1 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAGAGAGCAAGAGAGCAGA
*
91365054 TCGAAGATAGCAGATTTGGCGTCTCTGTAT
66 TCGAAGATAGTAGATTTGGCGTCTCTGTAT
* * * *
91365084 TGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT------C-AGAGAGCAGA
1 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAGAGAGCAAGAGAGCAGA
* * * *
91365142 TCAAAGATAGAAAAATTGGCGTCTCTGTAT
66 TCGAAGATAGTAGATTTGGCGTCTCTGTAT
* *
91365172 TGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGA
1 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGT-AGAGAGCA-A--G-AG-
91365237 TAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAT
60 -AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAT
* **
91365274 TGCCAGAGAGCAGATCAAAGATAATAGATTTGACGTCTCTGTATTGT------C-AGAGAGCAGA
1 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAGAGAGCAAGAGAGCAGA
*
91365332 TCGAAGATAGTAGATTTGGCATCTCTGTAT
66 TCGAAGATAGTAGATTTGGCGTCTCTGTAT
*
91365362 TGTCAGAGAGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTCAGAGAGCAAGA
1 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGT-AGAGAGCAAGA
91365421 TCGAGGGTAG
Statistics
Matches: 287, Mismatches: 26, Indels: 40
0.81 0.07 0.11
Matches are distributed among these distances:
88 197 0.69
89 1 0.00
90 3 0.01
91 1 0.00
93 1 0.00
95 3 0.01
96 3 0.01
97 1 0.00
99 1 0.00
100 2 0.01
102 74 0.26
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (95 bp):
TGTCAGAGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAGAGAGCAAGAGAGCAGA
TCGAAGATAGTAGATTTGGCGTCTCTGTAT
Found at i:91365286 original size:44 final size:44
Alignment explanation
Indices: 91365238--91365468 Score: 320
Period size: 44 Copynumber: 5.2 Consensus size: 44
91365228 GACTGAAGAT
*
91365238 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAG
1 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
* * *
91365282 AGCAGATCAAAGATAATAGATTTGACGTCTCTGTATTGTCAGAG
1 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
*
91365326 AGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAGAG
1 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
* * * *
91365370 AGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTCAGAG
1 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
* * ** *
91365414 AGCAAGATCGAGGGTAGCGGATTTGGTGTCT-TGTATTGTCAGAG
1 AGC-AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
91365458 AGCAGATCGAA
1 AGCAGATCGAA
91365469 CATTTCGGCT
Statistics
Matches: 165, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
43 7 0.04
44 138 0.84
45 20 0.12
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAG
Found at i:91365295 original size:58 final size:58
Alignment explanation
Indices: 91365180--91365296 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 58
91365170 ATTGTCAGAG
* *
91365180 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGACTAAAGAT
* *
91365238 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGA-TCAAAGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGACT-AAAGAT
91365296 A
1 A
91365297 ATAGATTTGA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 1 0.02
58 53 0.98
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (58 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGACTAAAGAT
Found at i:91365312 original size:146 final size:146
Alignment explanation
Indices: 91365087--91365390 Score: 468
Period size: 146 Copynumber: 2.1 Consensus size: 146
91365077 TCTGTATTGT
* *
91365087 AAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
1 AAGATAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAG
* *
91365152 AAAAATTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT
66 AAAAATTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT
* *
91365217 GTAAGAGAGCAGA-CTG
131 GTAAGAGAGCAAATC-A
* *
91365233 AAGATAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCAAAGATA-
1 AAGATAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAG
* * *
91365297 ATAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAT
66 A-AAAATTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTAT
*
91365362 TGTCAGAGAGCAAATCA
130 TGTAAGAGAGCAAATCA
91365379 AAGATAGCAGAT
1 AAGATAGCAGAT
91365391 TTGACGTCTC
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
145 1 0.01
146 142 0.99
147 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.26
Consensus pattern (146 bp):
AAGATAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAG
AAAAATTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT
GTAAGAGAGCAAATCA
Found at i:91365371 original size:190 final size:190
Alignment explanation
Indices: 91365048--91365417 Score: 587
Period size: 190 Copynumber: 1.9 Consensus size: 190
91365038 ATTATCAGAG
* * *
91365048 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGATCAAAGATAACAGAT
* *
91365113 TTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAAAATTGGCGTCTCTGTATTGTCAG
66 TTGACATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAAAATTGGCATCTCTGTATTGTCAG
* * *
91365178 AGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGAT
131 AGAGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAAGAGAGCAGACTGAAGAT
* * *
91365238 AGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCAAAGATAATAGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGATCAAAGATAACAGAT
* * * * *
91365303 TTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAG
66 TTGACATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAAAATTGGCATCTCTGTATTGTCAG
*
91365368 AGAGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTCAGAGAGCA
131 AGAGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAAGAGAGCA
91365418 AGATCGAGGG
Statistics
Matches: 163, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
190 163 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (190 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCAAGAGAGCAGATCAAAGATAACAGAT
TTGACATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGAAAAATTGGCATCTCTGTATTGTCAG
AGAGCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTAAGAGAGCAGACTGAAGAT
Found at i:91365451 original size:234 final size:234
Alignment explanation
Indices: 91365007--91365463 Score: 718
Period size: 234 Copynumber: 2.0 Consensus size: 234
91364997 GTCAGAGAGT
* * * *
91365007 AGATTGAAGATAGTAGATTTGACGTCTCTGTATTATCAGAGAGCAGATCGAAGATAGCAGATTTG
1 AGATCGAAGATAGTAGATTTGACGTCTCTGTATTACCAGAGAGCAGATCAAAGATAACAGATTTG
*
91365072 GCGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
66 ACGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
* *
91365137 GCAGATCAAAGATAGAAAAATTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
131 GCAAATCAAAGATAGAAAAATTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
91365202 TGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGATAGC
196 TGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGATAGC
* * *
91365241 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCAAAGATAATAGATTTG
1 AGATCGAAGATAGTAGATTTGACGTCTCTGTATTACCAGAGAGCAGATCAAAGATAACAGATTTG
* *
91365306 ACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAGAGA
66 ACGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
* * * * * *
91365371 GCAAATCAAAGATAGCAGATTTGACGTCTCTGTATTGTCAGAGAGCAAGATCGAGGGTAGCGGAT
131 GCAAATCAAAGATAGAAAAATTGACGTCTCTGTATTGTCAGAGAGC-AGATCGAAGATAGCAGAT
* *
91365436 TTGGTGTCT-TGTATTGTCAGAGAGCAGA
195 TTGGCGTCTCTGTATTGTAAGAGAGCAGA
91365464 TCGAACATTT
Statistics
Matches: 202, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
234 179 0.89
235 23 0.11
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (234 bp):
AGATCGAAGATAGTAGATTTGACGTCTCTGTATTACCAGAGAGCAGATCAAAGATAACAGATTTG
ACGTCTCTGTATTGTAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
GCAAATCAAAGATAGAAAAATTGACGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
TGGCGTCTCTGTATTGTAAGAGAGCAGACTGAAGATAGC
Found at i:91366703 original size:17 final size:17
Alignment explanation
Indices: 91366681--91366716 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
91366671 GGTCCTTCCA
*
91366681 TATTTTTAATATTATTT
1 TATTTTTAATATAATTT
*
91366698 TATTTTTATTATAATTT
1 TATTTTTAATATAATTT
91366715 TA
1 TA
91366717 CCCTGACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTTTTAATATAATTT
Found at i:91367464 original size:20 final size:20
Alignment explanation
Indices: 91367418--91367465 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
91367408 TATGTTTACA
* *
91367418 ATTTGTTTATTTATTTTTGC
1 ATTTTTTTATTTATTTTAGC
*
91367438 ATTTTTTTATTT-TTTTAGT
1 ATTTTTTTATTTATTTTAGC
*
91367457 ATTGTTTTA
1 ATTTTTTTA
91367466 GTAGGTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (20 bp):
ATTTTTTTATTTATTTTAGC
Found at i:91368953 original size:18 final size:17
Alignment explanation
Indices: 91368921--91368961 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
91368911 TTAGTGTCCT
91368921 AAAAA-AGAGAAAAGAA
1 AAAAAGAGAGAAAAGAA
91368937 AAAAAGAGAGCAAAAGAA
1 AAAAAGAGAG-AAAAGAA
*
91368955 AACAAGA
1 AAAAAGA
91368962 AAAACCAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.23
17 4 0.18
18 13 0.59
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAAAGAGAGAAAAGAA
Found at i:91371879 original size:41 final size:40
Alignment explanation
Indices: 91371780--91371965 Score: 201
Period size: 41 Copynumber: 4.6 Consensus size: 40
91371770 AGTGTAAACA
* * * *
91371780 GGGCACATATGTGCATTTTAGGGGTACTGAAGTACAACAG
1 GGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAAAG
** *
91371820 GGGCATGTATGTGCAATTCAAGGGTACCGAAGTACAAAGAG
1 GGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAA-AG
* * * *
91371861 GGGCACATATGTGGAATTCAGGGGTGCCAAAGTATAAATAG
1 GGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAA-AG
** *
91371902 GGGCACATATGTGCAATTCAGGGGTATTGAAGTATAGAAAG
1 GGGCACATATGTGCAATTCAGGGGTACCGAAGTACA-AAAG
* *
91371943 GGGCACGTATGTACAATTCAGGG
1 GGGCACATATGTGCAATTCAGGG
91371966 AATAATTAGG
Statistics
Matches: 122, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.25
41 89 0.73
42 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.23
Consensus pattern (40 bp):
GGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAAAG
Found at i:91380060 original size:40 final size:40
Alignment explanation
Indices: 91380013--91380088 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
91380003 TAGTGCCTCA
*
91380013 TATAGCCGAAGTTATTC-CAATTCACACACTAAGAGCTATT
1 TATAGCCGAAGCTATTCTCAA-TCACACACTAAGAGCTATT
* *
91380053 TATAGCCGAAGCTGTTCTCAATCTCACACTAAGAGC
1 TATAGCCGAAGCTATTCTCAATCACACACTAAGAGC
91380089 CAAACATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCTCAATCACACACTAAGAGCTATT
Found at i:91388835 original size:52 final size:51
Alignment explanation
Indices: 91388717--91388894 Score: 238
Period size: 52 Copynumber: 3.5 Consensus size: 51
91388707 TGGATACCCG
* * *
91388717 GTGG-CTTGCACATAGTACCATC-CTTGTAATCAAAGCTACCTTCTTCACAAA
1 GTGGCCTT-CACATAGTACCA-CACTTGTGACCAAAGCTATCTTCTTCACAAA
* *
91388768 GTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
91388820 CTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TCTTCCCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
91388869 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
91388895 AGTCACTAGT
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 33 0.29
50 1 0.01
51 38 0.33
52 42 0.37
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:91394403 original size:29 final size:29
Alignment explanation
Indices: 91394361--91394485 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
91394351 AAAAGCATGT
91394361 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
91394390 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
91394419 ATACGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
91394448 ATATGAATGAGA-GTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
91394476 ATATGCATGT
1 ATATGAATGT
91394486 ATGTAGACTT
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 21 0.24
29 66 0.76
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:91401585 original size:12 final size:12
Alignment explanation
Indices: 91401568--91401593 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91401558 ATATGTTGAA
91401568 TTTTAATTAATT
1 TTTTAATTAATT
91401580 TTTTAATTAATT
1 TTTTAATTAATT
91401592 TT
1 TT
91401594 GATGAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTAATTAATT
Found at i:91405268 original size:19 final size:18
Alignment explanation
Indices: 91405246--91405290 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
91405236 TGTTTACAAT
*
91405246 TTTTTTATTTATTTTTGTA
1 TTTTTTATTT-TTTTAGTA
91405265 TTTTTTATTTTTTTAGTA
1 TTTTTTATTTTTTTAGTA
91405283 TTGTTTTA
1 TT-TTTTA
91405291 GTAGGTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.78
Consensus pattern (18 bp):
TTTTTTATTTTTTTAGTA
Found at i:91416624 original size:40 final size:40
Alignment explanation
Indices: 91416522--91416705 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
91416512 AAATTGAATG
* * * * *
91416522 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
91416562 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
91416602 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
91416642 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
91416682 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
91416706 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:91418219 original size:26 final size:26
Alignment explanation
Indices: 91418151--91418223 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
91418141 GGGTGTTACA
91418151 TTATAAACCAAGGGTATTTTAGTAATT
1 TTATAAACCAA-GGTATTTTAGTAATT
* * * *
91418178 TTACAAAGCAGGGTATTTTGGTAATT
1 TTATAAACCAAGGTATTTTAGTAATT
* *
91418204 TTGTAAACCAAAGTATTTTA
1 TTATAAACCAAGGTATTTTA
91418224 AACATGGATA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
26 28 0.78
27 8 0.22
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (26 bp):
TTATAAACCAAGGTATTTTAGTAATT
Found at i:91421054 original size:31 final size:31
Alignment explanation
Indices: 91421002--91421095 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
91420992 CCTTTTCATA
*
91421002 TTTCATATTTCA-AATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91421032 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91421063 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91421094 TT
1 TT
91421096 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 12 0.19
31 50 0.81
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:91421410 original size:20 final size:20
Alignment explanation
Indices: 91421385--91421444 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
91421375 TATGATTACC
91421385 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
91421405 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
91421425 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
91421445 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:91421519 original size:25 final size:25
Alignment explanation
Indices: 91421487--91421534 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91421477 ATACATAAAC
* * *
91421487 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91421512 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91421535 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91422750 original size:27 final size:27
Alignment explanation
Indices: 91422688--91422752 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
91422678 GGGCATATTC
91422688 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
91422715 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
91422742 GTCTTTTTACC
1 GTCATTTTACC
91422753 TTTTAGGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:91422907 original size:27 final size:27
Alignment explanation
Indices: 91422867--91422949 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
91422857 AAAAAGTCAA
*
91422867 GGGTATTTCT-GTAACTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTGTAAATCAG
** *
91422894 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTGTAAATCAG
91422920 AGGGTA-TTTGGTAATTTTGTAAATCGAG
1 -GGGTATTTTGGTAATTTTGTAAATC-AG
91422948 GG
1 GG
91422950 TAAAACAGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
26 18 0.40
27 26 0.58
28 1 0.02
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCAG
Found at i:91422936 original size:26 final size:27
Alignment explanation
Indices: 91422894--91422951 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
91422884 TGTAAATCAG
*
91422894 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
91422921 GGGTA-TTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
91422947 GGGTA
1 GGGTA
91422952 AAACAGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:91422968 original size:27 final size:27
Alignment explanation
Indices: 91422929--91423192 Score: 318
Period size: 27 Copynumber: 9.9 Consensus size: 27
91422919 GAGGGTATTT
*
91422929 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
91422956 AGTAATTCTGTAAATCAAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
91422983 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
91423010 GATAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
91423037 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
91423064 GATAATTATGTAAATC-TGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
91423090 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTGTAAATCGA-GGGTAAAAC
*
91423117 GGTAATT-TATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * **
91423143 GATAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
91423170 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
91423193 CTTTGGTAAT
Statistics
Matches: 206, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
26 43 0.21
27 163 0.79
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:91423176 original size:133 final size:135
Alignment explanation
Indices: 91422931--91423192 Score: 384
Period size: 133 Copynumber: 2.0 Consensus size: 135
91422921 GGGTATTTGG
* * *
91422931 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
** * *
91422996 ATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAA
66 ATCGAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
91423061 AACGA
131 AACGA
* ** * * *
91423066 TAATTATGTAAATC-TGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACGGTAATT-TATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
91423129 ATCGAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
66 ATCGAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
91423193 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
133 64 0.57
134 36 0.32
135 13 0.12
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (135 bp):
TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
AACGA
Found at i:91423200 original size:27 final size:27
Alignment explanation
Indices: 91422903--91423219 Score: 221
Period size: 27 Copynumber: 11.9 Consensus size: 27
91422893 GGGGTATTTT
* ***
91422903 GGTAATTTTACAAATTGAGGGT-ATTT
1 GGTAATTTTACAAATCGAGGGTAAAAC
**
91422929 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
* * ** * *
91422956 AGTAATTCTGTAAATCAAGGGTAAAAT
1 GGTAATTTTACAAATCGAGGGTAAAAC
* * *
91422983 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
* * **
91423010 GATAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
* ** *
91423037 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
* * ** * *
91423064 GATAATTATGTAAATC-TGGGTAAAAT
1 GGTAATTTTACAAATCGAGGGTAAAAC
* *
91423090 GGTAATTATGTA-AATTAG-GGGTAAAAC
1 GGTAATT-T-TACAAATCGAGGGTAAAAC
*
91423117 GGTAA-TTTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
*
91423143 GATAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTAAAAC
* * ****
91423170 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTAAAAC
*
91423197 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTACAAATCGAGGGTA
91423220 TTTCAATAAT
Statistics
Matches: 241, Mismatches: 43, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
24 2 0.01
25 5 0.02
26 47 0.20
27 186 0.77
28 1 0.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTAAAAC
Found at i:91423203 original size:160 final size:161
Alignment explanation
Indices: 91422928--91423219 Score: 392
Period size: 160 Copynumber: 1.8 Consensus size: 161
91422918 TGAGGGTATT
* * * *
91422928 TGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TGGTAATTATGTAAATAGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAGAGTAATTCTA
* * **
91422993 TAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGG
66 CAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGG
91423058 TAAAACGATAATTATGTAAATCTGGGTAAAA
131 TAAAACGATAATTATGTAAATCTGGGTAAAA
* * *
91423089 TGGTAATTATGTAAATTAG-GGGTAAAACGGTAATT-TATAAATCGAGGGTAAAACGA-TAATTT
1 TGGTAATTATGTAAA-TAGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA-GAGTAATTC
* **** *
91423151 TACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAG
64 TACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAG
91423216 GGTA
129 GGTA
91423220 TTTCAATAAT
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
160 80 0.71
161 30 0.27
162 2 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (161 bp):
TGGTAATTATGTAAATAGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAGAGTAATTCTA
CAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGG
TAAAACGATAATTATGTAAATCTGGGTAAAA
Found at i:91423281 original size:26 final size:26
Alignment explanation
Indices: 91423187--91423418 Score: 234
Period size: 27 Copynumber: 8.7 Consensus size: 26
91423177 CTATAAATCG
* * *
91423187 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACT
*** ** *
91423214 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACT
** * *
91423241 AGGGTATTTCAGTAATTTCACAAATT
1 AGGGTATTTTGGTAATTTTACAAACT
91423267 AGGGTATTTTGGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACT
*
91423293 AGGGGTA-TTTGATAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
91423319 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
* *
91423346 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAA-CT
*
91423374 AGGGTATTTTAGTAATTTTACAAAGC-
1 AGGGTATTTTGGTAATTTTACAAA-CT
91423400 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
91423419 GTAAACCAAA
Statistics
Matches: 178, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
26 66 0.37
27 110 0.62
28 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:91423338 original size:27 final size:27
Alignment explanation
Indices: 91423242--91423418 Score: 236
Period size: 27 Copynumber: 6.7 Consensus size: 27
91423232 TACAGGTCGA
** * *
91423242 GGGTATTTCAGTAATTTCACAAATTA-
1 GGGTATTTTGGTAATTTTACAAACTAG
91423268 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
91423295 GGGTA-TTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
91423321 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
91423348 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
91423375 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
91423401 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
91423419 GTAAACCAAA
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
26 64 0.47
27 71 0.52
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:91423405 original size:53 final size:53
Alignment explanation
Indices: 91423187--91423436 Score: 229
Period size: 53 Copynumber: 4.7 Consensus size: 53
91423177 CTATAAATCG
* ** * * * ** *
91423187 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACA-AACT
** * ** *
91423241 AGGGTATTTCAGTAATTTCACAAA-TTAGGGTATTTTGGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT
* * * *
91423293 AGGGGTA-TTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT
*
91423346 AGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGC-
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAA-CT
** *
91423400 AGGGTATTTTGGTAATTTTGTAAACCAA-AGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
91423437 AACATGGATA
Statistics
Matches: 166, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
52 23 0.14
53 83 0.50
54 59 0.36
55 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT
Found at i:91423432 original size:26 final size:26
Alignment explanation
Indices: 91423269--91423435 Score: 165
Period size: 27 Copynumber: 6.3 Consensus size: 26
91423259 CACAAATTAG
* *
91423269 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
91423296 GGTA-TTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
91423322 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
91423349 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
91423375 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
91423402 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
91423428 AGTATTTT
1 GGTATTTT
91423436 AAACATGGAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
26 53 0.43
27 70 0.57
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:91426274 original size:31 final size:31
Alignment explanation
Indices: 91426222--91426315 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
91426212 CCTTTTCATA
*
91426222 TTTCATATTTCA-AATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91426252 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91426283 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
91426314 TT
1 TT
91426316 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 12 0.19
31 50 0.81
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:91426630 original size:20 final size:20
Alignment explanation
Indices: 91426605--91426664 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
91426595 TATGATTACC
91426605 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
91426625 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
91426645 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
91426665 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:91426739 original size:25 final size:25
Alignment explanation
Indices: 91426707--91426754 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91426697 ATACATAAAC
* * *
91426707 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91426732 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91426755 ATGTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91427970 original size:27 final size:27
Alignment explanation
Indices: 91427908--91427972 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
91427898 GGGCATATTC
91427908 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
91427935 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
91427962 GTCTTTTTACC
1 GTCATTTTACC
91427973 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:91428056 original size:27 final size:26
Alignment explanation
Indices: 91428026--91428081 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
91428016 GTAAATCAAC
*
91428026 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
91428053 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
91428079 AAA
1 AAA
91428082 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:91428173 original size:27 final size:27
Alignment explanation
Indices: 91428088--91428174 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
91428078 TAAAAAGTCA
* *
91428088 AGGGTATTTCT-GTAACTTTGTAAATC-
1 AGGGTATTT-TGGTAATTTTATAAATCG
* *
91428114 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
*
91428142 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
91428169 AGGGTA
1 AGGGTA
91428175 AAACAGTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.04
27 48 0.94
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:91428183 original size:27 final size:27
Alignment explanation
Indices: 91428152--91428417 Score: 347
Period size: 27 Copynumber: 9.9 Consensus size: 27
91428142 AGGGTATTTT
*
91428152 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
91428179 AGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
91428206 AGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
91428233 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
91428260 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
91428287 GATAATTATGTAAATCTG-GGGTAAAAT
1 GGTAATTCTGTAAATC-GAGGGTAAAAC
* *
91428314 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTGTAAATCGA-GGGTAAAAC
*
91428341 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* **
91428368 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
91428395 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
91428418 CTTTGGTAAT
Statistics
Matches: 211, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
27 209 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:91428184 original size:54 final size:54
Alignment explanation
Indices: 91428125--91428650 Score: 229
Period size: 54 Copynumber: 9.8 Consensus size: 54
91428115 GGGGTATTTT
* *
91428125 GGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
* * ** * ***** * *
91428179 AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
* ** **** * * *
91428233 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
* * ** *** * * *
91428287 GATAATTATGTAAATCTG-GGGTAAAATGGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTTTACAAATC-GAGGGTATTTTGGTAATTTTATAAATCGA-GGGTAAAAC
* * **** *
91428341 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
* * * * * ***
91428395 GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
** ** ** * * * ****
91428449 AATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGA-GGGTAAAAC
* * * * ****
91428503 GGTAATTTTACAAA-CTAGTGGTATTTTGATAATTTTACAAA-CTAGTGGTATTTT
1 GGTAATTTTACAAATCGAG-GGTATTTTGGTAATTTTATAAATCGAG-GGTAAAAC
* * * ****
91428557 GGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
* * *
91428611 AGTAATTTTACAAAGC-AGGGTATTTTGGTAATTTTGTAAA
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAA
91428651 CCAAAGTATT
Statistics
Matches: 392, Mismatches: 69, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
53 29 0.07
54 356 0.91
55 7 0.02
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (54 bp):
GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAC
Found at i:91428454 original size:27 final size:27
Alignment explanation
Indices: 91428424--91428488 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
91428414 GGTACTTTGG
91428424 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
91428451 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
91428478 TAATTTCACAA
1 TAATTTTACAA
91428489 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:91428497 original size:27 final size:27
Alignment explanation
Indices: 91428467--91428645 Score: 236
Period size: 27 Copynumber: 6.7 Consensus size: 27
91428457 TACAGGTCGA
** * *
91428467 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
91428494 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
91428521 TGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
91428548 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
91428575 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
91428602 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
91428628 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
91428646 GTAAACCAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 17 0.12
27 119 0.87
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:91428553 original size:81 final size:78
Alignment explanation
Indices: 91428413--91428644 Score: 241
Period size: 81 Copynumber: 2.9 Consensus size: 78
91428403 TATAAATCGA
* * * * **
91428413 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAA-ACAAGGGTATTT-TATAATTTTACA-AACGAGGGTATTTCAG
*
91428478 TAATTTCACAAATTAG
63 TAATTTCACAAACTAG
* * **
91428494 GGGTATTTTGGTAATTTTACAAACTAGTGGTATTTTGATAATTTTACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACAAG-GGTATTTT-ATAATTTTACAAACGAG-GGTATTTCAG
*
91428559 TAATTTTACAAACTAG
63 TAATTTCACAAACTAG
* **
91428575 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA-GCAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTA-TAATTTTACAAACG-AGGGTATTTCAG
91428639 TAATTT
63 TAATTT
91428645 TGTAAACCAA
Statistics
Matches: 131, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
80 23 0.18
81 105 0.80
82 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (78 bp):
GGGTATTTTGGTAATTTTACAAACAAGGGTATTTTATAATTTTACAAACGAGGGTATTTCAGTAA
TTTCACAAACTAG
Found at i:91428659 original size:26 final size:26
Alignment explanation
Indices: 91428495--91428662 Score: 174
Period size: 27 Copynumber: 6.3 Consensus size: 26
91428485 ACAAATTAGG
* *
91428495 GGTATTTTGGTAATTTTACAAACTAGT
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
91428522 GGTATTTTGATAATTTTACAAACTAGT
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
91428549 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
91428576 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
91428602 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
91428629 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
91428655 AGTATTTT
1 GGTATTTT
91428663 AAACATGGAT
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 28 0.23
27 96 0.77
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:91435101 original size:39 final size:39
Alignment explanation
Indices: 91435047--91435126 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
91435037 GAATCAGGGT
* * *
91435047 AAGAATCTGCTATTTTGGCAAAATGGCTACAAGTCTACC
1 AAGAATCTACTATTTTGGAAAAATAGCTACAAGTCTACC
*
91435086 AAGAATCTACTATTTTGGAAAAATATCTACAAGTCTACC
1 AAGAATCTACTATTTTGGAAAAATAGCTACAAGTCTACC
91435125 AA
1 AA
91435127 AATTTGTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (39 bp):
AAGAATCTACTATTTTGGAAAAATAGCTACAAGTCTACC
Found at i:91443637 original size:23 final size:24
Alignment explanation
Indices: 91443607--91443655 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
91443597 TGCCATCATT
*
91443607 TACTTTGTTGTTTTTCATTTT-TG
1 TACTTTGTCGTTTTTCATTTTGTG
91443630 TACTTTGTCGTTTTTCATTTTGTG
1 TACTTTGTCGTTTTTCATTTTGTG
91443654 TA
1 TA
91443656 AAATTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.10, C:0.10, G:0.14, T:0.65
Consensus pattern (24 bp):
TACTTTGTCGTTTTTCATTTTGTG
Found at i:91444220 original size:25 final size:25
Alignment explanation
Indices: 91444191--91444266 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
91444181 ATAATTGATG
91444191 AATATTTTATATTTAAAATTTATTT
1 AATATTTTATATTTAAAATTTATTT
* * *
91444216 AATATTATT-TATTTGATATTTA-TA
1 AATATT-TTATATTTAAAATTTATTT
**
91444240 AATATTTATATATATTTTAATTTATTT
1 AATATTT-TATAT-TTAAAATTTATTT
91444267 TTAAAAATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.03
24 8 0.21
25 20 0.51
26 9 0.23
27 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (25 bp):
AATATTTTATATTTAAAATTTATTT
Found at i:91444229 original size:32 final size:31
Alignment explanation
Indices: 91444193--91444272 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 31
91444183 AATTGATGAA
91444193 TATTTTATATTTAAAATTTATTTA-ATAT-TATT
1 TATTTTATATTTAAAA--TATTTATATATAT-TT
*
91444225 TATTTGATATTTATAAATATTTATATATATTT
1 TATTTTATATTTA-AAATATTTATATATATTT
* *
91444257 TAATTTATTTTTAAAA
1 TATTTTATATTTAAAA
91444273 ATAATATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
31 9 0.22
32 28 0.68
33 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (31 bp):
TATTTTATATTTAAAATATTTATATATATTT
Found at i:91444235 original size:21 final size:20
Alignment explanation
Indices: 91444211--91444266 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
91444201 ATTTAAAATT
*
91444211 TATTTAATATTATTTATTTGA
1 TATTTAATATTATTTATAT-A
*
91444232 TATTT-ATAAATATTTATATA
1 TATTTAAT-ATTATTTATATA
91444252 TATTTTAAT-TTATTT
1 TA-TTTAATATTATTT
91444267 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 10 0.34
21 17 0.59
22 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTTAATATTATTTATATA
Found at i:91445561 original size:15 final size:17
Alignment explanation
Indices: 91445541--91445580 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
91445531 TTTGTTTTTA
91445541 AAATTATAAAAAT-AT-
1 AAATTATAAAAATAATG
*
91445556 AAATTATTAAAATAATG
1 AAATTATAAAAATAATG
91445573 AAATTATA
1 AAATTATA
91445581 TTTTTACTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
AAATTATAAAAATAATG
Found at i:91454550 original size:46 final size:49
Alignment explanation
Indices: 91454446--91454766 Score: 226
Period size: 47 Copynumber: 6.8 Consensus size: 49
91454436 CCACATTATG
* ** * *
91454446 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGATG-
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGT
* *
91454494 AGAGCTAGTGTAAGA-CATATCTAGGACAT-GCATCGGCCTCGAGATGT
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGT
* *
91454541 A-AGCCAGTGTAAGA-CATGT-T-GGGCAT-GCATCGG-GTACGAGATGT
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGT
* * * * *
91454585 ---GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGGAC-GGATATGT
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GGCCTCGAGATGT
* * * * * *
91454631 GAGAGCTAGTGTAAGATCATGTCTAGGACATAGCATCTGCCTCGA-TTTT
1 -AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGT
* ** * * * *
91454680 GATAGTTAGTGTAAGTCCATGTCTAGGACATGGCATC-GACT--TGATGG
1 -AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGT
*
91454727 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 A-GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
91454767 ATTACACCTT
Statistics
Matches: 215, Mismatches: 42, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
42 11 0.05
43 6 0.03
44 21 0.10
45 6 0.03
46 41 0.19
47 46 0.21
48 18 0.08
49 36 0.17
50 30 0.14
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGT
Found at i:91454583 original size:44 final size:46
Alignment explanation
Indices: 91454448--91454654 Score: 144
Period size: 46 Copynumber: 4.5 Consensus size: 46
91454438 ACATTATGAG
*** *
91454448 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACATTGAGATG-A
1 AGCCAGTGTAAGACCATGTCTGGG-CAT-GCATCGGGTA-CGAGATGTA
* * * *
91454495 GAGCTAGTGTAAGA-CATATCTAGGACATGCATCGGCCT-CGAGATGTA
1 -AGCCAGTGTAAGACCATGTCT-GGGCATGCATCGG-GTACGAGATGTA
91454542 AGCCAGTGTAAGA-CATGT-TGGGCATGCATCGGGTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGCATGCATCGGGTACGAGATGTA
* *
91454585 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGG-ACGGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGG-CAT-GCATCGGGTAC-GAGATGT-A
* *
91454633 GAGCTAGTGTAAGATCATGTCT
1 -AGCCAGTGTAAGACCATGTCT
91454655 AGGACATAGC
Statistics
Matches: 129, Mismatches: 16, Indels: 26
0.75 0.09 0.15
Matches are distributed among these distances:
42 11 0.09
43 6 0.05
44 24 0.19
45 6 0.05
46 41 0.32
47 10 0.08
48 14 0.11
50 17 0.13
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGCATGCATCGGGTACGAGATGTA
Found at i:91454749 original size:146 final size:136
Alignment explanation
Indices: 91454447--91454767 Score: 349
Period size: 146 Copynumber: 2.3 Consensus size: 136
91454437 CACATTATGA
** **
91454447 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGATGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGATGAGAGCTAGTGTAAGACAT
* *
91454512 ATCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTTGGGCATGCATCGGGTA
66 ATCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTTGGACATGCATCGCGTA
91454577 CGAGAT
131 CGAGAT
* * * *
91454583 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGGACGGATATGTGAGAGCTAGTGTAAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGA--TGAGAGCTAGTGTAAGA-
* * * * ** *
91454648 CATGTCTAGGACATAGCATCTGCCTCGA-TTTTGATAGTTAGTGTAAGTCCATGTCTAGGACATG
63 CATATCTAGGACAT-GCATCGGCCTCGAGATGT-A-AGCCAGTGTAAG-ACATGT-T-GGACAT-
* *
91454712 GCATCGACTTGATG-GAT
121 GCATCG-CGT-ACGAGAT
91454729 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
91454768 TTACACCTTA
Statistics
Matches: 151, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
136 37 0.25
138 17 0.11
139 15 0.10
140 13 0.09
141 10 0.07
142 5 0.03
143 1 0.01
144 5 0.03
145 6 0.04
146 40 0.26
147 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (136 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGATGAGAGCTAGTGTAAGACAT
ATCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTTGGACATGCATCGCGTA
CGAGAT
Found at i:91458846 original size:12 final size:12
Alignment explanation
Indices: 91458826--91458858 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
91458816 GAATGCTCAA
*
91458826 ACACAGGCAAAG
1 ACACGGGCAAAG
91458838 ACACGGGCAAAG
1 ACACGGGCAAAG
91458850 ACACGGGCA
1 ACACGGGCA
91458859 TGTGTCTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.27, G:0.30, T:0.00
Consensus pattern (12 bp):
ACACGGGCAAAG
Found at i:91460741 original size:21 final size:21
Alignment explanation
Indices: 91460717--91460789 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
91460707 CAAACACACC
*
91460717 AACAGATGCTCAAAAGAGCTG
1 AACAGAAGCTCAAAAGAGCTG
* ** *
91460738 AACAAAAGCTCGTAAGAGTTG
1 AACAGAAGCTCAAAAGAGCTG
*** *
91460759 AACAGAAGCTTGTAAGAGTTG
1 AACAGAAGCTCAAAAGAGCTG
91460780 AACAGAAGCT
1 AACAGAAGCT
91460790 TGTAAGAGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCAAAAGAGCTG
Found at i:91460790 original size:21 final size:21
Alignment explanation
Indices: 91460730--91460799 Score: 113
Period size: 21 Copynumber: 3.3 Consensus size: 21
91460720 AGATGCTCAA
* * *
91460730 AAGAGCTGAACAAAAGCTCGT
1 AAGAGTTGAACAGAAGCTTGT
91460751 AAGAGTTGAACAGAAGCTTGT
1 AAGAGTTGAACAGAAGCTTGT
91460772 AAGAGTTGAACAGAAGCTTGT
1 AAGAGTTGAACAGAAGCTTGT
91460793 AAGAGTT
1 AAGAGTT
91460800 TATCCACCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.21
Consensus pattern (21 bp):
AAGAGTTGAACAGAAGCTTGT
Found at i:91463307 original size:20 final size:19
Alignment explanation
Indices: 91463284--91463340 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
91463274 CATTACAAAT
91463284 ATATCTTATCATATACATAA
1 ATATCTTATCATATACAT-A
* * *
91463304 ATATCATATCA-AAACATT
1 ATATCTTATCATATACATA
91463322 ATATACTTATACATATACA
1 ATAT-CTTAT-CATATACA
91463341 AATGTCGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.14
19 9 0.31
20 12 0.41
21 4 0.14
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (19 bp):
ATATCTTATCATATACATA
Found at i:91465733 original size:28 final size:27
Alignment explanation
Indices: 91465669--91465739 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
91465659 TATAGTGAGT
*
91465669 TCGCACACTTAGTGCTATATAATCAAC
1 TCGCACACTTAGTGCTACATAATCAAC
*
91465696 TCGCACACTTAGTGCTACATGATCAAAC
1 TCGCACACTTAGTGCTACATAATC-AAC
91465724 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
91465740 GTACAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCTACATAATCAAC
Found at i:91472141 original size:40 final size:39
Alignment explanation
Indices: 91471994--91472161 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 39
91471984 CAATTGAATG
* * ** * *
91471994 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * *
91472034 ATATCTGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
91472074 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
91472114 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
91472154 ATATCCGG
1 ATATCCGG
91472162 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 101 0.94
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:91476844 original size:28 final size:27
Alignment explanation
Indices: 91476781--91476850 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
91476771 ATAGTGAGTC
*
91476781 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
91476808 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
91476836 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91476851 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:91478779 original size:41 final size:43
Alignment explanation
Indices: 91478722--91478811 Score: 103
Period size: 41 Copynumber: 2.1 Consensus size: 43
91478712 CTCATATCGT
* * *
91478722 TGCCACTGTCCCAGACAGGGTCTTACACG-AATCAAATA-CGA
1 TGCCAATGTCCCAGACAGGGTCCTACACGTAACCAAATACCGA
* * * *
91478763 TGCCAATGTCCTAGACATGGTCCTACTCGTAACCACATACCGA
1 TGCCAATGTCCCAGACAGGGTCCTACACGTAACCAAATACCGA
91478806 TGCCAA
1 TGCCAA
91478812 CATCCGAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 24 0.60
42 7 0.17
43 9 0.22
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (43 bp):
TGCCAATGTCCCAGACAGGGTCCTACACGTAACCAAATACCGA
Found at i:91479964 original size:15 final size:15
Alignment explanation
Indices: 91479944--91479976 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
91479934 TAAATCATGA
91479944 AAATTT-CACATATAT
1 AAATTTACACATA-AT
91479959 AAATTTACACATAAT
1 AAATTTACACATAAT
91479974 AAA
1 AAA
91479977 CACAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTTACACATAAT
Found at i:91485088 original size:29 final size:29
Alignment explanation
Indices: 91484976--91485098 Score: 158
Period size: 29 Copynumber: 4.2 Consensus size: 29
91484966 GTGACGAGAT
*
91484976 TGGCACTAAGTGTGCGTGCTGGAAATAA-A
1 TGGCACTAAGTGTGCATGCTGGAAA-AATA
* *
91485005 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
91485034 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
91485063 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
91485092 CGGCACT
1 TGGCACT
91485099 GGGTGTGCGA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 1 0.01
29 82 0.99
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:91499647 original size:49 final size:49
Alignment explanation
Indices: 91499523--91499647 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 49
91499513 GTGTGTTAGT
* *
91499523 GTAAAACCTGTCTGGGACATGGCATCGGCACCGATAGATAAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATAAGAGCCAGA
* * * *
91499572 GTAAGACCTGTC-GAGGACACGACATCGGC-CTC-A-AGATATGCAAGCTAGA
1 GTAAGACCTGTCTG-GGACATGGCATCGGCAC-CGATAGATAAG--AGCCAGA
91499621 GTAAGACCTGTCTGGGACATGGCATCG
1 GTAAGACCTGTCTGGGACATGGCATCG
91499648 ACTTGAGGCG
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
47 6 0.10
48 3 0.05
49 53 0.84
50 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATAAGAGCCAGA
Found at i:91499723 original size:49 final size:47
Alignment explanation
Indices: 91499621--91499768 Score: 167
Period size: 49 Copynumber: 3.2 Consensus size: 47
91499611 GCAAGCTAGA
* * * ** *
91499621 GTAAGACCTGTCTGGGACATGGCATCGA-CTTGA-G-GCGTGTCAGT
1 GTAAGACCTATCTGGGACATGGCATCAACCTAGATGTAAGAGTCAGT
* *
91499665 GTAAGACCTATCTGGGACATGGCATCAACCTCGATGTATGGAAGTCAGT
1 GTAAGACCTATCTGGGACATGGCATCAACCTAGATGTA-AG-AGTCAGT
* *
91499714 GTAAGACCTATCTGGGACATGGCATCAACTTAGATGTAAGAGCCAGT
1 GTAAGACCTATCTGGGACATGGCATCAACCTAGATGTAAGAGTCAGT
91499761 GTAAGACC
1 GTAAGACC
91499769 ATGTTTGGAA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
44 26 0.29
45 4 0.04
46 1 0.01
47 14 0.16
48 2 0.02
49 42 0.47
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
GTAAGACCTATCTGGGACATGGCATCAACCTAGATGTAAGAGTCAGT
Found at i:91502972 original size:40 final size:40
Alignment explanation
Indices: 91502922--91503107 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
91502912 GCTACTCGTT
* * *
91502922 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
91502962 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
91503002 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
91503042 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
91503083 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91503108 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:91511207 original size:33 final size:32
Alignment explanation
Indices: 91511158--91511226 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
91511148 CTTAACTTGA
91511158 AATTAAAATTAATCCTTTTAAAATCCTAATTAG
1 AATTAAAATTAATCCTTTTAAAATCCTAA-TAG
* * * *
91511191 AATTCAAATTACTCCTTTTCAAATTCTAATAG
1 AATTAAAATTAATCCTTTTAAAATCCTAATAG
91511223 AATT
1 AATT
91511227 TATCTTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 7 0.22
33 25 0.78
ACGTcount: A:0.42, C:0.14, G:0.03, T:0.41
Consensus pattern (32 bp):
AATTAAAATTAATCCTTTTAAAATCCTAATAG
Found at i:91511508 original size:29 final size:29
Alignment explanation
Indices: 91511441--91511528 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
91511431 TATAGTCCTG
* *
91511441 CCACTATT-TTCCAAATTTTACAATTTTG
1 CCACTATTCTTCCAAATTTTACAGTTTTA
91511469 CCACTGA-TCTTCCAAATTTTACAGTTTTA
1 CCACT-ATTCTTCCAAATTTTACAGTTTTA
** *
91511498 CCACTATTCTTTAAAAAATTTACAGTTTTA
1 CCACTATTC-TTCCAAATTTTACAGTTTTA
91511528 C
1 C
91511529 TATAACCTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.14
29 26 0.51
30 18 0.35
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.43
Consensus pattern (29 bp):
CCACTATTCTTCCAAATTTTACAGTTTTA
Found at i:91513295 original size:27 final size:28
Alignment explanation
Indices: 91513263--91513558 Score: 207
Period size: 27 Copynumber: 10.5 Consensus size: 28
91513253 AAGTACTCCC
*
91513263 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACCATTTTACCCTCA
*
91513291 G-TTTACAGAATTACTATTTTACCCTC-
1 GATTTACAGAATTACCATTTTACCCTCA
*
91513317 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACCATTTTACCCTCA
*** *
91513345 G-TTTACAGAATTATTGTTTTACCCT-T
1 GATTTACAGAATTACCATTTTACCCTCA
* *
91513371 GATTTACAAAATTACCATTTTACCC-CC
1 GATTTACAGAATTACCATTTTACCCTCA
* * *
91513398 GATTTACATAAATACCATTTTACCC-CC
1 GATTTACAGAATTACCATTTTACCCTCA
* *
91513425 GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTC-
1 G-ATT----T--AC--A--GAATTACCATTTTACCCTCA
* * * *
91513463 GATTTACAAAATTATCGTTTTACCGTC-
1 GATTTACAGAATTACCATTTTACCCTCA
* * *
91513490 GATTTATAGAATTACTATTTTACCCT-T
1 GATTTACAGAATTACCATTTTACCCTCA
* *
91513517 GATTTACAGAATTACTATTTTACCCT-T
1 GATTTACAGAATTACCATTTTACCCTCA
*
91513544 GATTTACAAAATTAC
1 GATTTACAGAATTAC
91513559 AGAAATACCC
Statistics
Matches: 221, Mismatches: 30, Indels: 35
0.77 0.10 0.12
Matches are distributed among these distances:
26 2 0.01
27 189 0.86
28 4 0.02
29 1 0.00
31 2 0.01
32 1 0.00
33 1 0.00
34 2 0.01
36 1 0.00
37 2 0.01
38 15 0.07
39 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (28 bp):
GATTTACAGAATTACCATTTTACCCTCA
Found at i:91513303 original size:54 final size:54
Alignment explanation
Indices: 91513245--91513357 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
91513235 CGACTTGTAA
91513245 AATTACCAAAGTACTCC-CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* ***
91513299 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
91513353 AATTA
1 AATTA
91513358 TTGTTTTACC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.04
54 52 0.96
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:91513353 original size:81 final size:81
Alignment explanation
Indices: 91513262--91513558 Score: 294
Period size: 81 Copynumber: 3.5 Consensus size: 81
91513252 AAAGTACTCC
*
91513262 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACTATTTTACCCTCGATTTACAG
91513326 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
** * * *
91513343 C-AGTTTACAGAATTATTGTTTTACCCTTGATTTACAAAATTACCATTTTACCCCCGATTTACAT
1 CGA-TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTAC--
*
91513407 AAATACCATTTTACCCCCGTTTTACCCT
63 --AGA--A--TTA---CCGTTTTACCCT
* * * *
91513435 CGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA-TCGTTTTACCGTCGATTTATAG
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACT-ATTTTACCCTCGATTTACAG
**
91513499 AATTACTATTTTACCCT
65 AATTACCGTTTTACCCT
* ** *
91513516 TGATTTACAGAATTACTATTTTACCCTTGATTTACAAAATTAC
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
91513559 AGAAATACCC
Statistics
Matches: 176, Mismatches: 24, Indels: 31
0.76 0.10 0.13
Matches are distributed among these distances:
80 1 0.01
81 99 0.56
82 1 0.01
84 3 0.02
85 2 0.01
86 1 0.01
87 1 0.01
88 2 0.01
89 3 0.02
92 62 0.35
93 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGA
ATTACCGTTTTACCCT
Found at i:91513365 original size:54 final size:55
Alignment explanation
Indices: 91513262--91513558 Score: 280
Period size: 54 Copynumber: 5.3 Consensus size: 55
91513252 AAAGTACTCC
* *
91513262 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTATTGTTTTACCCT
91513316 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTATTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTATTGTTTTACCCT
* * * * * *
91513370 TGATTTACAAAATTACCATTTTACCC-CCGATTTACATAAATACCATTTTACCCCCGTTTTACCC
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACA-GAAT----TATT------GTTTTACCC
91513434 T
55 T
* * * *
91513435 CGACTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTATCGTTTTACCGT
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTATTGTTTTACCCT
* ** * * *
91513489 CGATTTATAGAATTACTATTTTACCCT-TGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTATTGTTTTACCCT
* *
91513543 TGATTTACAAAATTAC
1 CGATTTACAGAATTAC
91513559 AGAAATACCC
Statistics
Matches: 202, Mismatches: 27, Indels: 28
0.79 0.11 0.11
Matches are distributed among these distances:
53 2 0.01
54 147 0.73
55 3 0.01
59 3 0.01
60 2 0.01
64 4 0.02
65 40 0.20
66 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (55 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTATTGTTTTACCCT
Found at i:91513430 original size:38 final size:38
Alignment explanation
Indices: 91513388--91513469 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
91513378 AAAATTACCA
* *
91513388 TTTTACCCCCGATTTACATAAATACCATTTTACCCCCG
1 TTTTACCCCCGACTTACAGAAATACCATTTTACCCCCG
* * * *
91513426 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCG
1 TTTTACCCCCGACTTACAGAAATACCATTTTACCCCCG
*
91513464 ATTTAC
1 TTTTAC
91513470 AAAATTATCG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.07, T:0.37
Consensus pattern (38 bp):
TTTTACCCCCGACTTACAGAAATACCATTTTACCCCCG
Found at i:91513432 original size:92 final size:92
Alignment explanation
Indices: 91513331--91513514 Score: 244
Period size: 92 Copynumber: 2.0 Consensus size: 92
91513321 TACAGAATTA
* ** *
91513331 CCGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTTGATTTACAAAATTACCATTTTACC
1 CCGTTTTACCCTCGA-CTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACC
*
91513395 CCCGATTTACATAAATACCATTTTACCC
65 CCCGATTTACAGAAATACCATTTTACCC
* * *
91513423 CCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCG
1 CCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCC
* * * *
91513488 TCGATTTATAGAATTACTATTTTACCC
66 CCGATTTACAGAAATACCATTTTACCC
91513515 TTGATTTACA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
92 78 0.99
93 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (92 bp):
CCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCC
CCGATTTACAGAAATACCATTTTACCC
Found at i:91513448 original size:119 final size:119
Alignment explanation
Indices: 91513307--91513541 Score: 337
Period size: 119 Copynumber: 2.0 Consensus size: 119
91513297 AGAATTACTA
* * * *
91513307 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTT
1 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTATCGTTTTACCCTC
*
91513371 GATTTACAAAATTACCATTTTACCCCCGATTTACATAAATACCATTTTACCCCCG
65 GATTTACAAAATTACCATTTTACCCCCGATTTACAGAAATACCATTTTACCCCCG
*
91513426 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCG
1 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCG
* * * ** * *
91513491 ATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCC
66 ATTTACAAAATTACCATTTTACCCCCGATTTACAGAAATACCATTTTACCC
91513542 TTGATTTACA
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
119 101 0.99
120 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (119 bp):
TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCG
ATTTACAAAATTACCATTTTACCCCCGATTTACAGAAATACCATTTTACCCCCG
Found at i:91513541 original size:146 final size:145
Alignment explanation
Indices: 91513277--91513555 Score: 400
Period size: 146 Copynumber: 1.9 Consensus size: 145
91513267 TACAGAATTA
* * *
91513277 CCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCC
1 CCGTTTTACCCTCAGCTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCC
* *
91513342 TCAGTTTACAGAATTATTGTTTTACCCTTGATTTACAAAATTACCATTTTACCCCCGATTTACAT
66 TCAGTTTACAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCCCGATTTACA-
91513407 AAATACCATTTTACCC
130 AAATACCATTTTACCC
* *
91513423 CCGTTTTACCCTC-GACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACC
1 CCGTTTTACCCTCAG-CTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACC
* * * * **
91513487 GTC-GATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTTGATTTAC
65 CTCAG-TTTACAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCCCGATTTAC
91513551 AAAAT
129 AAAAT
91513556 TACAGAAATA
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
145 6 0.05
146 112 0.95
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (145 bp):
CCGTTTTACCCTCAGCTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCC
TCAGTTTACAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCCCGATTTACAA
AATACCATTTTACCC
Found at i:91513567 original size:27 final size:27
Alignment explanation
Indices: 91513510--91513735 Score: 156
Period size: 27 Copynumber: 8.3 Consensus size: 27
91513500 ATTACTATTT
* ***
91513510 TACCCTTGATTTACAGAATTACTA-TTT
1 TACCCTTGATTTACAAAATTAC-AGAAA
91513537 TACCCTTGATTTACAAAATTACAGAAA
1 TACCCTTGATTTACAAAATTACAGAAA
* **
91513564 TACCCTTAATTTGTAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
* *** *
91513591 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACAGAAA
** **
91513618 TACCCTCAATTTTTAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
* *
91513645 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACAGAAA
*
91513672 TACCCTTGACTTT-CTAAAAATTATAGAAA
1 TACCCTTGA-TTTAC--AAAATTACAGAAA
* * *
91513701 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACAGAAA
91513728 TACCCTTG
1 TACCCTTG
91513736 GTTTGTAGAT
Statistics
Matches: 157, Mismatches: 31, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
26 5 0.03
27 123 0.78
28 10 0.06
29 19 0.12
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACAGAAA
Found at i:91513584 original size:54 final size:54
Alignment explanation
Indices: 91513537--91513762 Score: 213
Period size: 54 Copynumber: 4.1 Consensus size: 54
91513527 ATTACTATTT
*
91513537 TACCCTTGATTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTTAATTTCTAAAATTACCAAAA
* *** * * *
91513591 TACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAATTTTTAAAATTACCAAAA
1 TACC-CTTGATTTACAAAATTACAGAAATACCCTTAATTTCTAAAATTACCAAAA
* * * *
91513645 TACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTT-AATTTCT-AAAATTACCA-AAA
* * * ** * * *
91513701 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTTAATTTCTAAAATTACCAAAA
*
91513755 CACCCTTG
1 TACCCTTG
91513763 TAGGATGAAA
Statistics
Matches: 136, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
53 1 0.01
54 84 0.62
55 12 0.09
56 39 0.29
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACAGAAATACCCTTAATTTCTAAAATTACCAAAA
Found at i:91513584 original size:81 final size:81
Alignment explanation
Indices: 91513426--91513585 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 81
91513416 TTTACCCCCG
* *** * *
91513426 TTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCG
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCA
*
91513491 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * * * *
91513507 TTTTACCCTTGATTTACAGAATTACTATTTTACCCTTGATTTACAAAATTA-CAGAAATACCCTT
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATC-GAAATACCCTC
*
91513571 AATTTGTAAAATTAC
65 AATTTATAAAATTAC
91513586 CAAAATACCA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCA
ATTTATAAAATTACTA
Found at i:91513857 original size:27 final size:27
Alignment explanation
Indices: 91513780--91513857 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
91513770 AAATGACTAA
* *
91513780 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
91513807 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
91513834 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
91513858 GAATATGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:91515118 original size:20 final size:20
Alignment explanation
Indices: 91515093--91515139 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
91515083 TGGGATTTTG
*
91515093 ATGCACATGATATGTATGAT
1 ATGCACATGATATGCATGAT
91515113 ATGCACATGATATGCATGAT
1 ATGCACATGATATGCATGAT
91515133 ATGCACA
1 ATGCACA
91515140 CGAGATGTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (20 bp):
ATGCACATGATATGCATGAT
Found at i:91515124 original size:11 final size:11
Alignment explanation
Indices: 91515093--91515139 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 11
91515083 TGGGATTTTG
91515093 ATGCACATGAT
1 ATGCACATGAT
*
91515104 ATG--TATGAT
1 ATGCACATGAT
91515113 ATGCACATGAT
1 ATGCACATGAT
91515124 ATG--CATGAT
1 ATGCACATGAT
91515133 ATGCACA
1 ATGCACA
91515140 CGAGATGTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
9 17 0.57
11 13 0.43
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (11 bp):
ATGCACATGAT
Found at i:91515250 original size:24 final size:23
Alignment explanation
Indices: 91515194--91515384 Score: 267
Period size: 24 Copynumber: 8.0 Consensus size: 23
91515184 GAGGAAGTGA
91515194 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
91515217 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
91515240 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
91515264 CAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
91515289 AAAAGGGCTTACGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
91515312 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
91515335 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
91515360 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
91515384 A
1 A
91515385 TGATAAAGCA
Statistics
Matches: 153, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
23 44 0.29
24 97 0.63
25 12 0.08
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.