Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 303 of 378
Found at i:91795229 original size:22 final size:23
Alignment explanation
Indices: 91795204--91795248 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
91795194 ACTTTAGCCA
91795204 TTTTTATTTCAATT-TAATTTTG
1 TTTTTATTTCAATTATAATTTTG
*
91795226 TTTTTATTTTAATTACTAATTTT
1 TTTTTATTTCAATTA-TAATTTT
91795249 TCTTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
24 7 0.35
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTTTATTTCAATTATAATTTTG
Found at i:91799008 original size:3 final size:3
Alignment explanation
Indices: 91798964--91798996 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
91798954 ATCCCTCCAA
*
91798964 ATT ATT ATT ATT ATT ATG ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
91798997 GGAATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:91799101 original size:17 final size:17
Alignment explanation
Indices: 91799040--91799110 Score: 67
Period size: 17 Copynumber: 4.3 Consensus size: 17
91799030 TATCTTTATC
*
91799040 TTTGTCTTTCTTTTAGT
1 TTTGTCTTTATTTTAGT
* *
91799057 TTTGT-TTTATTAT-GCC
1 TTTGTCTTTATTTTAG-T
**
91799073 TTTG-AGTTATTTTAGT
1 TTTGTCTTTATTTTAGT
91799089 TTTGTCTTTATTTTAGT
1 TTTGTCTTTATTTTAGT
91799106 TTTGT
1 TTTGT
91799111 TCACTGCAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 20 0.48
17 21 0.50
ACGTcount: A:0.11, C:0.07, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTGTCTTTATTTTAGT
Found at i:91804527 original size:40 final size:40
Alignment explanation
Indices: 91804480--91804704 Score: 346
Period size: 40 Copynumber: 5.6 Consensus size: 40
91804470 ACTACTTGTT
*
91804480 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
91804520 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
91804560 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
91804600 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
91804640 CAAATGCCTTC-GGAGCTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
91804680 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
91804705 TTATCATCCA
Statistics
Matches: 171, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 6 0.04
40 161 0.94
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:91806213 original size:2 final size:2
Alignment explanation
Indices: 91806208--91806248 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
91806198 TCACACATGC
91806208 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91806249 ATAAGCATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91812567 original size:40 final size:39
Alignment explanation
Indices: 91812514--91812738 Score: 353
Period size: 40 Copynumber: 5.7 Consensus size: 39
91812504 ACTACTTGCT
91812514 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
91812554 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
91812594 CAAATGCCTTTGGGACTTAGCCCGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
91812633 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
91812673 CAAATGCCTTC-GGAGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTA-TAGTAACTCGCA
91812713 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
91812739 TATCATCCAA
Statistics
Matches: 172, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 42 0.24
40 127 0.74
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:91812633 original size:79 final size:79
Alignment explanation
Indices: 91812514--91812737 Score: 360
Period size: 79 Copynumber: 2.8 Consensus size: 79
91812504 ACTACTTGCT
* *
91812514 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAAATGCCTTTGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91812579 ATATAGTAACTCGCA
65 ATATAGTAACTCGCA
91812594 CAAATGCCTTTGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTTGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
91812659 TATAGTAACTCGCA
66 TATAGTAACTCGCA
* * * *
91812673 CAAATGCC-TTCGGAGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTTGGGA-CTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
91812737 G
64 G
91812738 TTATCATCCA
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
78 5 0.04
79 72 0.53
80 59 0.43
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTTGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAGTAACTCGCA
Found at i:91812714 original size:119 final size:119
Alignment explanation
Indices: 91812514--91812738 Score: 382
Period size: 119 Copynumber: 1.9 Consensus size: 119
91812504 ACTACTTGCT
*
91812514 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
* *
91812579 ATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGTATAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
91812633 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG-GTCTTAGCCCG
*
91812697 GA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
65 GATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
91812739 TATCATCCAA
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
118 1 0.01
119 98 0.98
120 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:91815654 original size:26 final size:26
Alignment explanation
Indices: 91815625--91815676 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
91815615 AAGCTAGGAA
91815625 AATTACTTTAATTAAACTCACTTTAC
1 AATTACTTTAATTAAACTCACTTTAC
91815651 AATTACTTTAATTAAACTCACTTTAC
1 AATTACTTTAATTAAACTCACTTTAC
91815677 TATCAACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTACTTTAATTAAACTCACTTTAC
Found at i:91817906 original size:15 final size:15
Alignment explanation
Indices: 91817883--91817918 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
91817873 AAAACAAATA
91817883 ATAAT-AAACTAAGG
1 ATAATAAAACTAAGG
91817897 ATAATAAAACTAAGG
1 ATAATAAAACTAAGG
91817912 ATAATAA
1 ATAATAA
91817919 GAGAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.61, C:0.06, G:0.11, T:0.22
Consensus pattern (15 bp):
ATAATAAAACTAAGG
Found at i:91822754 original size:40 final size:40
Alignment explanation
Indices: 91822709--91822876 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
91822699 CGGAATATAA
91822709 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
91822749 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
91822789 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91822829 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
91822869 CCGGATAT
1 CCGGATAT
91822877 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91832076 original size:14 final size:15
Alignment explanation
Indices: 91832053--91832086 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
91832043 CGGAGTATCC
91832053 AAAGGAAAAGATGCA
1 AAAGGAAAAGATGCA
91832068 AAAGG-AAAGATGCA
1 AAAGGAAAAGATGCA
91832082 AAAGG
1 AAAGG
91832087 TCACGCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.59, C:0.06, G:0.29, T:0.06
Consensus pattern (15 bp):
AAAGGAAAAGATGCA
Found at i:91838730 original size:72 final size:72
Alignment explanation
Indices: 91838608--91838983 Score: 406
Period size: 72 Copynumber: 5.2 Consensus size: 72
91838598 AAGCCTTTTT
* * * * * *
91838608 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
91838673 ATTTTCA
66 ATTTTCA
* **
91838680 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
91838745 AATTTCA
66 ATTTTCA
* ** * * * * *
91838752 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACACGCCG
1 ATTTTTG-TGT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTG
91838817 AGGTATTTTCA
62 AGGTATTTTCA
*
91838828 A-TTTT-TG---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
91838888 AATTTCA
66 ATTTTCA
* * ** * *
91838895 ATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTTTGTGTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
91838959 TATTTTCA
65 TATTTTCA
*
91838967 ATTTCTGT-TTTCAAAAA
1 ATTTTTGTGTTT-AAAAA
91838984 AAAAAAAATC
Statistics
Matches: 256, Mismatches: 38, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
67 18 0.07
68 3 0.01
69 37 0.14
72 138 0.54
73 5 0.02
74 34 0.13
75 3 0.01
76 18 0.07
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCA
Found at i:91838878 original size:143 final size:142
Alignment explanation
Indices: 91838621--91838970 Score: 456
Period size: 143 Copynumber: 2.5 Consensus size: 142
91838611 TTTGTTTTTC
* * *
91838621 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGT-CACGCTGAGGTATTTTCAATTTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAA-TTT
* **
91838685 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
65 TGTG--TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
91838750 CAATTTCTGTTGTCAAA
128 CAATTTCTGTTGTC--A
* * * *
91838767 AAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTATTTTCAATTT
*
91838832 T-TG-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCA
65 TGTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
91838895 ATTTCTGTTTTCA
130 ATTTCTGTTGTCA
* * ** * *
91838908 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTT
91838971 CTGTTTTCAA
Statistics
Matches: 180, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
139 21 0.12
141 33 0.18
143 67 0.37
146 37 0.21
147 4 0.02
148 18 0.10
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (142 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
GTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCA
Found at i:91840093 original size:18 final size:17
Alignment explanation
Indices: 91840054--91840092 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
91840044 CCTAAAGGTG
*
91840054 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
91840071 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
91840088 ATTTT
1 ATTTT
91840093 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:91840378 original size:29 final size:29
Alignment explanation
Indices: 91840322--91840378 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
91840312 TCTCTTCTTT
* *
91840322 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
91840351 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
91840379 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:91840630 original size:14 final size:14
Alignment explanation
Indices: 91840611--91840643 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91840601 ATCATATGTG
91840611 TATATTGTATATAT-
1 TATATT-TATATATA
91840625 TATATTTATATATA
1 TATATTTATATATA
91840639 TATAT
1 TATAT
91840644 ATTCTTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TATATTTATATATA
Found at i:91844867 original size:21 final size:22
Alignment explanation
Indices: 91844843--91844886 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
91844833 CCGACGAGGG
* *
91844843 TTGTGGTTGCTCCGGT-GGGGA
1 TTGTGGTTCCTCCGATAGGGGA
91844864 TTGTGGTTCCTCCGATAGGGGA
1 TTGTGGTTCCTCCGATAGGGGA
91844886 T
1 T
91844887 CTGGTTGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.09, C:0.16, G:0.41, T:0.34
Consensus pattern (22 bp):
TTGTGGTTCCTCCGATAGGGGA
Found at i:91847512 original size:3 final size:3
Alignment explanation
Indices: 91847504--91847550 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
91847494 TATTAAAGCA
91847504 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
91847551 GTTTTAACAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:91850360 original size:26 final size:26
Alignment explanation
Indices: 91850331--91850437 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
91850321 TGGTACAAAT
91850331 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91850357 TGATAATGGATTAGGT-AATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91850382 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91850408 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91850434 TGAT
1 TGAT
91850438 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91850391 original size:51 final size:52
Alignment explanation
Indices: 91850331--91850437 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
91850321 TGGTACAAAT
*
91850331 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGT-AATATTCCA
1 TGATAATGGGTTAGGCAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
91850382 TGATAATGGGTTAGGCAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGCAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
91850434 TGAT
1 TGAT
91850438 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 40 0.77
52 12 0.23
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGCAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:91852075 original size:27 final size:27
Alignment explanation
Indices: 91852032--91852144 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 27
91852022 AGGAAGCGTC
* *
91852032 CTGGTGGCTATGTCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
91852059 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
**
91852085 CCTGGTGGCT-AACCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
91852112 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
91852139 CTGGTG
1 CTGGTG
91852145 ACTTCGTCAC
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
26 28 0.38
27 46 0.62
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:91852110 original size:53 final size:53
Alignment explanation
Indices: 91852029--91852136 Score: 182
Period size: 53 Copynumber: 2.0 Consensus size: 53
91852019 TGGAGGAAGC
**
91852029 GTCCTGGTGGCTATGTCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
91852083 GTCCTGGTGGCTA-ACCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
1 GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
91852135 GT
1 GT
91852137 ATCTGGTGAC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
52 8 0.15
53 31 0.60
54 13 0.25
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.33
Consensus pattern (53 bp):
GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
Found at i:91852155 original size:27 final size:26
Alignment explanation
Indices: 91852045--91852161 Score: 105
Period size: 27 Copynumber: 4.4 Consensus size: 26
91852035 GTGGCTATGT
*
91852045 CACAATTATCTGATCTGGTGGCTCTGC
1 CACAA-TATCTGATCTGGTGACTCTGC
* **
91852072 CACATATATCTG-TCCTGGTGGCT-AAC
1 CACA-ATATCTGAT-CTGGTGACTCTGC
*
91852098 CACAATTATCTGATCTGGTGGCTCTGC
1 CACAA-TATCTGATCTGGTGACTCTGC
*
91852125 CACAATATCTGTATCTGGTGACT-TCGT
1 CACAATATCTG-ATCTGGTGACTCT-GC
91852152 CACAATATCT
1 CACAATATCT
91852162 AGCAGCCTCG
Statistics
Matches: 77, Mismatches: 6, Indels: 14
0.79 0.06 0.14
Matches are distributed among these distances:
25 1 0.01
26 28 0.36
27 47 0.61
28 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (26 bp):
CACAATATCTGATCTGGTGACTCTGC
Found at i:91852161 original size:53 final size:55
Alignment explanation
Indices: 91852029--91852161 Score: 170
Period size: 53 Copynumber: 2.5 Consensus size: 55
91852019 TGGAGGAAGC
* *
91852029 GTCCTGGTGGCT-ATGTCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGACTAACGTCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
91852083 GTCCTGGTGGCTAAC--CACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGACTAACGTCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
91852135 GTATCTGGTGACT-TCGTCACAA-TATCT
1 GT-CCTGGTGACTAACGTCACAATTATCT
91852162 AGCAGCCTCG
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
52 9 0.13
53 44 0.62
54 17 0.24
55 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (55 bp):
GTCCTGGTGACTAACGTCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:91857346 original size:35 final size:35
Alignment explanation
Indices: 91857300--91857369 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
91857290 CATGGAAAGG
91857300 AAGGATGATAATTCTTCATCTCTCCTTCCTTTCAT
1 AAGGATGATAATTCTTCATCTCTCCTTCCTTTCAT
91857335 AAGGATGATAATTCTTCATCTCTCCTTCCTTTCAT
1 AAGGATGATAATTCTTCATCTCTCCTTCCTTTCAT
91857370 CCTTCCTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.09, T:0.43
Consensus pattern (35 bp):
AAGGATGATAATTCTTCATCTCTCCTTCCTTTCAT
Found at i:91857415 original size:11 final size:11
Alignment explanation
Indices: 91857389--91857431 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
91857379 TATACTAAAT
*
91857389 AAATAATAAAAA
1 AAATAAT-AATA
*
91857401 AAATAATAATG
1 AAATAATAATA
91857412 AAATAATAATA
1 AAATAATAATA
91857423 AAATAATAA
1 AAATAATAA
91857432 AATATCTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 21 0.75
12 7 0.25
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (11 bp):
AAATAATAATA
Found at i:91857470 original size:24 final size:24
Alignment explanation
Indices: 91857418--91857483 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 24
91857408 AATGAAATAA
*
91857418 TAATAAAATAATAAAATATCTCAT
1 TAATAAAATAATAAAATATCTAAT
**
91857442 TAATAAAATAAT-ATTTATCTAAT
1 TAATAAAATAATAAAATATCTAAT
* *
91857465 TAA-ATAATTATAAAATATC
1 TAATAAAATAATAAAATATC
91857484 ATCAATATCA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
22 6 0.18
23 16 0.47
24 12 0.35
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (24 bp):
TAATAAAATAATAAAATATCTAAT
Found at i:91862743 original size:17 final size:18
Alignment explanation
Indices: 91862721--91862768 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
91862711 CAAATAAAAA
91862721 TATATAATAATATAAAT-
1 TATATAATAATATAAATG
*
91862738 TATATAAT-ATAAAAATG
1 TATATAATAATATAAATG
91862755 TATAT-ATAATATAA
1 TATATAATAATATAA
91862769 TATATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
TATATAATAATATAAATG
Found at i:91862746 original size:14 final size:16
Alignment explanation
Indices: 91862713--91862775 Score: 67
Period size: 16 Copynumber: 3.9 Consensus size: 16
91862703 ATAATTTACA
*
91862713 AATAAAAATATATAAT
1 AATATAAATATATAAT
91862729 AATATAAATTATATAAT
1 AATATAAA-TATATAAT
* *
91862746 -ATAAAAATGTATATAT
1 AATATAAATATATA-AT
91862762 AATAT-AATATATAA
1 AATATAAATATATAA
91862776 AAAATATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 6 0.15
16 22 0.56
17 11 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:91862746 original size:24 final size:24
Alignment explanation
Indices: 91862712--91862777 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
91862702 CATAATTTAC
91862712 AAATAA-A-AATATATAATAA-TAT
1 AAATAATATAATATATAA-AAGTAT
*
91862734 AAATTATATAATATA-AAAATGTAT
1 AAATAATATAATATATAAAA-GTAT
*
91862758 ATATAATATAATATATAAAA
1 AAATAATATAATATATAAAA
91862778 AATATTATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
22 7 0.19
23 3 0.08
24 22 0.61
25 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAATATAATATATAAAAGTAT
Found at i:91862826 original size:22 final size:20
Alignment explanation
Indices: 91862739--91862828 Score: 60
Period size: 22 Copynumber: 4.4 Consensus size: 20
91862729 AATATAAATT
*
91862739 ATATAATATAAAAATGTAT-
1 ATATAATATAAATATGTATA
* *
91862758 ATATAATAT-AATATATAAA
1 ATATAATATAAATATGTATA
* * *
91862777 AAATATTATGACAGATA-GTAAA
1 ATATAATAT-A-A-ATATGTATA
91862799 ATATAATATGAAATATGTATA
1 ATATAATAT-AAATATGTATA
91862820 ATAATAATA
1 AT-ATAATA
91862829 ATAATAATGT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.11
19 16 0.29
20 3 0.05
21 7 0.13
22 20 0.36
23 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (20 bp):
ATATAATATAAATATGTATA
Found at i:91862891 original size:17 final size:17
Alignment explanation
Indices: 91862871--91862913 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
91862861 ATATAATGAA
91862871 ATAAATAATAAAAATAT
1 ATAAATAATAAAAATAT
*
91862888 ATAACAT-ATAATAATAT
1 ATAA-ATAATAAAAATAT
*
91862905 ATATATAAT
1 ATAAATAAT
91862914 GTTACAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 18 0.82
18 2 0.09
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAAATAATAAAAATAT
Found at i:91864484 original size:4 final size:4
Alignment explanation
Indices: 91864477--91864501 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91864467 AATAAATAAA
91864477 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
91864502 TCTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:91865033 original size:173 final size:173
Alignment explanation
Indices: 91864787--91865169 Score: 520
Period size: 176 Copynumber: 2.2 Consensus size: 173
91864777 GTAAACGCGT
* * * * * *
91864787 GAAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACATAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTTCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
91864852 ATCTGCTTCAGTA-AAATC-GTCTGAAGGTTAGATCTGCTATGTA-GCTCTCCATCGAAATGGAG
66 ATCTGCTTCAGTATAAA-CACT-TGAAGGTTAGACCTACTATGTACGCTCTCCATCGAAATGAAG
* * * *
91864914 ATGCCAGATCTGTTATCTTGGATTTGCTTTGGTGTGAGAACATCC
129 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCC
*
91864959 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTTCTTGTAAACACAAGAATGCCCAAATCATCTTG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTTCTTGTAAACACAAGAATG-CCAAATCATCTTG
*
91865024 GATCTGCTTCAGTATAAACACTTGAAGGTTAGACCTACTATGTACCTGCTCTCCGTCGAAATGAA
65 GATCTGCTTCAGTATAAACACTTGAAGGTTAGACCTACTATGTA-C-GCTCTCCATCGAAATGAA
*
91865089 GATGCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCT
128 GATGCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCC
* * *
91865135 AAAAGTCAGATCTGCTATGTCTTCAATTTGCTTCT
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTTCT
91865170 CATTGAAGAT
Statistics
Matches: 184, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
172 44 0.24
173 48 0.26
174 4 0.02
176 88 0.48
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (173 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGCTTCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACACTTGAAGGTTAGACCTACTATGTACGCTCTCCATCGAAATGAAGAT
GCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCC
Found at i:91865193 original size:176 final size:172
Alignment explanation
Indices: 91864788--91865247 Score: 507
Period size: 176 Copynumber: 2.6 Consensus size: 172
91864778 TAAACGCGTG
* * * * * * * *
91864788 AAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACATAAGGATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCAATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
91864853 TCTGCTTCAGTA-AAATC-GTCTGAAGGTTAGATCTGCTATGTAGCTCTCCATCGAAATGGAGAT
66 TCTGCTTCAGTATAAA-CACT-TGAAGGTTAGATCTGCTATGTAGCTCTCCATCGAAATGAAGAT
* * * * *
91864916 GCCAGATCTGTTATCTTGGATTTGCTTTGGTGTGAGAACATCCG
129 GCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCCA
*
91864960 AAAGTCAAATCTGCTATGTCTTCGATTTGTTTCTTGTAAACACAAGAATGCCCAAATCATCTTGG
1 AAAGTCAAATCTGCTATGTCTTCAATTTGTTTCTTGTAAACACAAGAATG-CCAAATCATCTTGG
* * *
91865025 ATCTGCTTCAGTATAAACACTTGAAGGTTAGACCTACTATGTACCTGCTCTCCGTCGAAATGAAG
65 ATCTGCTTCAGTATAAACACTTGAAGGTTAGATCTGCTATGTA---GCTCTCCATCGAAATGAAG
*
91865090 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCTA
127 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCCA
* * *
91865136 AAAGTCAGATCTGCTATGTCTTCAATTTGCTTCTCATTG-AAGATA-GAGAA-GCCAAATCTTAT
1 AAAGTCAAATCTGCTATGTCTTCAATTTG-TT-TC-TTGTAA-ACACAAGAATGCCAAATC----
* * * *
91865198 TATCTTGGACCTGCTTCAGTGTAAACACGTGAAGGCTAGATCTGCTATGT
58 -ATCTTGGATCTGCTTCAGTATAAACACTTGAAGGTTAGATCTGCTATGT
91865248 TTTGGTCTGT
Statistics
Matches: 245, Mismatches: 28, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
172 43 0.18
173 48 0.20
174 4 0.02
176 91 0.37
177 3 0.01
178 8 0.03
179 5 0.02
181 43 0.18
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (172 bp):
AAAGTCAAATCTGCTATGTCTTCAATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACACTTGAAGGTTAGATCTGCTATGTAGCTCTCCATCGAAATGAAGATGC
CAGATCTGTTATCTTGGATCTGCTTTGATATGAAAACATCCA
Found at i:91877259 original size:17 final size:17
Alignment explanation
Indices: 91877233--91877286 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
91877223 TAATTTACAA
*
91877233 ATAAAATATATAATAAT
1 ATAAATTATATAATAAT
91877250 ATAAATTATATAAT-AT
1 ATAAATTATATAATAAT
*
91877266 AAAAATGTATAT-ATAAT
1 ATAAAT-TATATAATAAT
91877283 ATAA
1 ATAA
91877287 TATATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 9 0.28
17 23 0.72
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
ATAAATTATATAATAAT
Found at i:91877301 original size:24 final size:24
Alignment explanation
Indices: 91877232--91877301 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
91877222 ATAATTTACA
* * *
91877232 AATAAAATATATAATAATATAAAT
1 AATATAATATATAAAAATATATAT
* *
91877256 TATATAATATA-AAAATGTATATAT
1 AATATAATATATAAAA-ATATATAT
*
91877280 AATATAATATATAAAAAAATAT
1 AATATAATATATAAAAATATAT
91877302 GACAGATAGT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 3 0.08
24 29 0.81
25 4 0.11
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (24 bp):
AATATAATATATAAAAATATATAT
Found at i:91877445 original size:7 final size:7
Alignment explanation
Indices: 91877433--91877476 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
91877423 TAATTAATAC
91877433 ATATATA
1 ATATATA
91877440 ATATATA
1 ATATATA
*
91877447 ACATATA
1 ATATATA
91877454 ATATAT-
1 ATATATA
91877460 ATATATA
1 ATATATA
91877467 CATAT-TA
1 -ATATATA
91877474 ATA
1 ATA
91877477 AGTTTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
6 9 0.27
7 20 0.61
8 4 0.12
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATATA
Found at i:91877452 original size:16 final size:17
Alignment explanation
Indices: 91877429--91877476 Score: 64
Period size: 16 Copynumber: 2.8 Consensus size: 17
91877419 ATGATAATTA
91877429 ATACATATATAATATAT
1 ATACATATATAATATAT
91877446 A-ACATATAATATATATAT
1 ATACATAT-ATA-ATATAT
91877464 ATACATAT-TAATA
1 ATACATATATAATA
91877477 AGTTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 9 0.32
17 6 0.21
18 7 0.25
19 6 0.21
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
ATACATATATAATATAT
Found at i:91877534 original size:44 final size:41
Alignment explanation
Indices: 91877451--91877534 Score: 107
Period size: 44 Copynumber: 2.0 Consensus size: 41
91877441 TATATAACAT
*
91877451 ATAATATATATATATACATATTAATAAGTTTTTATAAATAAA
1 ATAATATATATATATACATATTAAT-AGTTTTTAAAAATAAA
91877493 ATAATATATTATTATATACATAATTAAT-GTTTATTAAAAATA
1 ATAATATA-TA-TATATACAT-ATTAATAGTTT-TTAAAAATA
91877535 TATATAAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 8 0.22
43 6 0.16
44 17 0.46
45 6 0.16
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (41 bp):
ATAATATATATATATACATATTAATAGTTTTTAAAAATAAA
Found at i:91883379 original size:10 final size:10
Alignment explanation
Indices: 91883354--91883387 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
91883344 AATATTTGAC
91883354 ATATAAATAT
1 ATATAAATAT
91883364 -TATAAATAT
1 ATATAAATAT
*
91883373 ATATAAATAA
1 ATATAAATAT
91883383 ATATA
1 ATATA
91883388 CACAAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATATAAATAT
Found at i:91884852 original size:6 final size:6
Alignment explanation
Indices: 91884841--91884883 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
91884831 TCTTAGAAAT
91884841 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
91884884 TCTAACGGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:91897418 original size:66 final size:66
Alignment explanation
Indices: 91897311--91897445 Score: 225
Period size: 66 Copynumber: 2.0 Consensus size: 66
91897301 TGAGTGTCAA
* * *
91897311 AAAATTACATGAAGACCATCTCAACAAGTTTTGTAATTATCTCCAAAGAACATTACTTCCTATAA
1 AAAATTACATGAAGACAATCTCAACAAGTTTTGTAACTATCTCCAAAGAACATTAATTCCTATAA
91897376 C
66 C
* *
91897377 AAAATTACATGAAGACAATCTCAACGAGTTTTGTGACTATCTCCAAAGAACATTAATTCCTATAA
1 AAAATTACATGAAGACAATCTCAACAAGTTTTGTAACTATCTCCAAAGAACATTAATTCCTATAA
91897442 C
66 C
91897443 AAA
1 AAA
91897446 CTTAAAAGGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (66 bp):
AAAATTACATGAAGACAATCTCAACAAGTTTTGTAACTATCTCCAAAGAACATTAATTCCTATAA
C
Found at i:91910263 original size:69 final size:68
Alignment explanation
Indices: 91910151--91910510 Score: 310
Period size: 69 Copynumber: 5.2 Consensus size: 68
91910141 TTTCGTCTGT
* * * *
91910151 AAACCTTAATTGTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCAC
1 AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCAC
91910216 ATAC
66 -TAC
* * * * *
91910220 GAACCTTGATTTTATAGCTAAGAGCTTTGCTTTCGCTAACTATTTTGGAGGTCGCAGCTCTTTGC
1 AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTC-TT-C
*
91910285 -CTAT
64 ACTAC
* * * * * * * **
91910289 AAACCTTGATTTTACATCTGGGAGCTTTGCTCTCACTAACTATTTTAGAGGTTGTGGCTTTTTGT
1 AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGC-TCTTCA
*
91910354 CCAC
65 CTAC
* * ** ** *
91910358 AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTTGCTAACTGTTTTGGAGGTTACAACTTTTCAT
1 AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCA-
91910423 CTAC
65 CTAC
* * * * * * * *
91910427 AAACCTTGATTTTACAG-TTGGAAGTTTTGCTCTAGCTAACTGTTTTTGAGGTCACGACTTTTCA
1 AAACCTTGATTTTACAGCTAGG-AGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCA
**
91910491 CTTGT
65 C-TAC
91910496 AAACCTTGATTTTAC
1 AAACCTTGATTTTAC
91910511 CAACAATAGT
Statistics
Matches: 238, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
68 8 0.03
69 225 0.95
70 4 0.02
71 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (68 bp):
AAACCTTGATTTTACAGCTAGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCAC
TAC
Found at i:91910500 original size:138 final size:138
Alignment explanation
Indices: 91910151--91910510 Score: 381
Period size: 138 Copynumber: 2.6 Consensus size: 138
91910141 TTTCGTCTGT
* * * * *
91910151 AAACCTTAATTGTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTCGCGGCTCTTCAC
1 AAACCTTGATTTTACAGTTGGGAGCTTTGCTCTAGCTAACTATTTTAGAGGTCGCGGCTTTTCAC
* * * * *
91910216 ATACGAACCTTGATTTTATAGCTAAGAGCTTTGCTTTCGCTAACTATTTTGGAGGTCGCAGCTCT
66 TTACAAACCTTGATTTTACAGCTAAGAGCTTTGCTTTCGCTAACTATTTTGGAGGTCACAACTCT
*
91910281 TTGCCTAT
131 TTGCCTAC
* *
91910289 AAACCTTGATTTTACA-TCTGGGAGCTTTGCTCTCA-CTAACTATTTTAGAGGTTGTGGCTTTT-
1 AAACCTTGATTTTACAGT-TGGGAGCTTTGCTCT-AGCTAACTATTTTAGAGGTCGCGGCTTTTC
** * * * *
91910351 TGTCCACAAACCTTGATTTTACAGCTAGGAGCTTTGCTCTT-GCTAACTGTTTTGGAGGTTACAA
64 ACT-TACAAACCTTGATTTTACAGCTAAGAGCTTTGCT-TTCGCTAACTATTTTGGAGGTCACAA
91910415 CT-TTT-CATCTAC
127 CTCTTTGC--CTAC
* * * * * *
91910427 AAACCTTGATTTTACAGTTGGAAGTTTTGCTCTAGCTAACTGTTTTTGAGGTCACGACTTTTCAC
1 AAACCTTGATTTTACAGTTGGGAGCTTTGCTCTAGCTAACTATTTTAGAGGTCGCGGCTTTTCAC
**
91910492 TTGTAAACCTTGATTTTAC
66 TTACAAACCTTGATTTTAC
91910511 CAACAATAGT
Statistics
Matches: 181, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
136 1 0.01
137 5 0.03
138 171 0.94
139 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (138 bp):
AAACCTTGATTTTACAGTTGGGAGCTTTGCTCTAGCTAACTATTTTAGAGGTCGCGGCTTTTCAC
TTACAAACCTTGATTTTACAGCTAAGAGCTTTGCTTTCGCTAACTATTTTGGAGGTCACAACTCT
TTGCCTAC
Found at i:91920098 original size:40 final size:39
Alignment explanation
Indices: 91919971--91920100 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
91919961 ATGCTGGAAA
*
91919971 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
91920011 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
91920051 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
91920091 TTATATCCGG
1 TTATATCCGG
91920101 TTGTATTCTG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:91927152 original size:52 final size:52
Alignment explanation
Indices: 91927091--91927191 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
91927081 GACGGAAAAG
* *
91927091 ATGTGATATGTGTTCCCGTATAAGACCATAGTTGGGCTATGGCATCGGTACA
1 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGTACA
*
91927143 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCGTCGGT
1 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGT
91927192 GTGATGTGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCATCGGTACA
Found at i:91927231 original size:53 final size:52
Alignment explanation
Indices: 91927091--91927242 Score: 173
Period size: 52 Copynumber: 2.9 Consensus size: 52
91927081 GACGGAAAAG
91927091 ATGTGATATGTGTTCCCGTATAAGACCATAGT-TGGGCTATGGCATCGGTACA
1 ATGTGATATGTGTTCCCGTATAAGACCATA-TCTGGGCTATGGCATCGGTACA
* * * ***
91927143 ATGTGATATGTGTTCCCGTATAAGACCAAAGCTGGGCTATGGCGTCGGTGTG
1 ATGTGATATGTGTTCCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
* * * *
91927195 ATGTGATAATGTGATT-TCTTATAAGATCATATCTGGGATATGGCATCG
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCATATCTGGGCTATGGCATCG
91927243 ATATTATATA
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 52 0.62
53 30 0.36
54 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
Found at i:91928254 original size:30 final size:31
Alignment explanation
Indices: 91928214--91928272 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
91928204 GCAAGCCAGA
* * *
91928214 ATTCCACACGGGTTGGCTACACGGCCATGGG
1 ATTCCACACGGGCTGGCCACACAGCCATGGG
91928245 ATTCC-CACGGGCTGGCCACACAGCCATG
1 ATTCCACACGGGCTGGCCACACAGCCATG
91928273 TCCCAGGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (31 bp):
ATTCCACACGGGCTGGCCACACAGCCATGGG
Found at i:91929976 original size:42 final size:41
Alignment explanation
Indices: 91929857--91929979 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
91929847 TACTGTACCA
** * * *
91929857 ATGCCATATCCCAGATATGGTCTTACATGTAATTTCCTATCG
1 ATGCCATAT-CCAGATATGGTCTTACACATAGTCTCATATCG
* * *
91929899 ATGTCAATAGCCTAGCTATGGTCTTACACGA-AGTCTCATATCG
1 ATG-CCATATCC-AGATATGGTCTTACAC-ATAGTCTCATATCG
*
91929942 ATGCCATATCTCAGATATGGTCTGACACATAGTCTCAT
1 ATGCCATATC-CAGATATGGTCTTACACATAGTCTCAT
91929980 TAACCCTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 32 0.50
43 31 0.48
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (41 bp):
ATGCCATATCCAGATATGGTCTTACACATAGTCTCATATCG
Found at i:91937614 original size:24 final size:24
Alignment explanation
Indices: 91937587--91937665 Score: 115
Period size: 24 Copynumber: 3.3 Consensus size: 24
91937577 AGTGCTCGCT
91937587 TGAACTTCCAGATATGGTTCTTTG
1 TGAACTTCCAGATATGGTTCTTTG
91937611 TGAACTTCCCA-ATATGGTTCTTTG
1 TGAACTT-CCAGATATGGTTCTTTG
* * *
91937635 TGAACTTCCTGATAAGGTTATTTG
1 TGAACTTCCAGATATGGTTCTTTG
91937659 TGAACTT
1 TGAACTT
91937666 TCCAATTATG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.04
24 45 0.90
25 3 0.06
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (24 bp):
TGAACTTCCAGATATGGTTCTTTG
Found at i:91937643 original size:48 final size:49
Alignment explanation
Indices: 91937587--91937681 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 49
91937577 AGTGCTCGCT
* * *
91937587 TGAACTTCCAGATATGGTTCTTTGTGAACTTCCCAA-TATGGTTCTTTG
1 TGAACTTCCAGATAAGGTTATTTGTGAACTTCCCAATTATGGCTCTTTG
* *
91937635 TGAACTTCCTGATAAGGTTATTTGTGAACTTTCCAATTATGGCTCTT
1 TGAACTTCCAGATAAGGTTATTTGTGAACTTCCCAATTATGGCTCTT
91937682 ATGAGCTTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 32 0.78
49 9 0.22
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (49 bp):
TGAACTTCCAGATAAGGTTATTTGTGAACTTCCCAATTATGGCTCTTTG
Found at i:91954873 original size:24 final size:24
Alignment explanation
Indices: 91954846--91954921 Score: 113
Period size: 24 Copynumber: 3.3 Consensus size: 24
91954836 AGTGCTCGCT
*
91954846 TGAACTTCCCGATATGGTTCTTTG
1 TGAACTTCCCGATAAGGTTCTTTG
*
91954870 TGAACTTCCCGATACGGTTC--T-
1 TGAACTTCCCGATAAGGTTCTTTG
91954891 TGAACTTCCCGATAAGGTTCTTTG
1 TGAACTTCCCGATAAGGTTCTTTG
91954915 TGAACTT
1 TGAACTT
91954922 TCCCATTATG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
21 19 0.40
22 1 0.02
23 1 0.02
24 26 0.55
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (24 bp):
TGAACTTCCCGATAAGGTTCTTTG
Found at i:91954896 original size:21 final size:21
Alignment explanation
Indices: 91954844--91954912 Score: 93
Period size: 21 Copynumber: 3.1 Consensus size: 21
91954834 ATAGTGCTCG
*
91954844 CTTGAACTTCCCGATATGGTT
1 CTTGAACTTCCCGATAAGGTT
*
91954865 CTTTGTGAACTTCCCGATACGGTT
1 C--T-TGAACTTCCCGATAAGGTT
91954889 CTTGAACTTCCCGATAAGGTT
1 CTTGAACTTCCCGATAAGGTT
91954910 CTT
1 CTT
91954913 TGTGAACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 22 0.51
22 1 0.02
23 1 0.02
24 19 0.44
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (21 bp):
CTTGAACTTCCCGATAAGGTT
Found at i:91959208 original size:23 final size:24
Alignment explanation
Indices: 91959162--91959208 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
91959152 TTTTATGATA
*
91959162 TTTTTAAACAATTTTATGATTTTT
1 TTTTTAAACAATTTTAGGATTTTT
91959186 TTTTTAAA-AATTTTAGGGATTTT
1 TTTTTAAACAATTTTA-GGATTTT
91959209 ATGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.60
Consensus pattern (24 bp):
TTTTTAAACAATTTTAGGATTTTT
Found at i:91959783 original size:19 final size:19
Alignment explanation
Indices: 91959757--91959798 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
91959747 ATTTTTTGGA
91959757 TTTTAATTAATTTTTC-AT
1 TTTTAATTAATTTTTCAAT
**
91959775 TTTTCAATTTTTTTTTCAAT
1 TTTT-AATTAATTTTTCAAT
91959795 TTTT
1 TTTT
91959799 TAAGGAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.20
19 10 0.50
20 6 0.30
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTAATTAATTTTTCAAT
Found at i:91959791 original size:12 final size:12
Alignment explanation
Indices: 91959774--91959799 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91959764 TAATTTTTCA
91959774 TTTTTCAATTTT
1 TTTTTCAATTTT
91959786 TTTTTCAATTTT
1 TTTTTCAATTTT
91959798 TT
1 TT
91959800 AAGGAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTCAATTTT
Found at i:91959886 original size:37 final size:37
Alignment explanation
Indices: 91959836--91959909 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
91959826 AGAAGAATCC
*
91959836 AAAAAATGTGAAACAAATCAAGCCTTA-AAAAATTGA
1 AAAAAATGAGAAACAAATCAAGCCTTAGAAAAATTGA
91959872 AAAAAATTGAGAAACAAATCAAGCCTTAGAAAAATTGA
1 AAAAAA-TGAGAAACAAATCAAGCCTTAGAAAAATTGA
91959910 TTAAAAACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 6 0.17
37 20 0.57
38 9 0.26
ACGTcount: A:0.58, C:0.11, G:0.12, T:0.19
Consensus pattern (37 bp):
AAAAAATGAGAAACAAATCAAGCCTTAGAAAAATTGA
Found at i:91964157 original size:3 final size:3
Alignment explanation
Indices: 91964141--91964184 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
91964131 AATCATACGC
91964141 ATA ATA A-A AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
91964185 CATGAACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:91965950 original size:44 final size:44
Alignment explanation
Indices: 91965886--91966784 Score: 729
Period size: 44 Copynumber: 20.0 Consensus size: 44
91965876 AAAGGTATCG
** * *
91965886 CTTCAATCTGCTGTACTGCAACTTTAGGGAGATGAGATTTGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * ** * *
91965930 CTTTAATTTGCTCCACTGCAACTTCAGAAAGATAAGACTTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * * * * *
91965974 CTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAATCGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * *
91966018 CTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * * * * ** *
91966062 CTTTAATTTGCTCTACTGTAACTTTAGATATATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* *
91966107 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----AT---TTGTAT
* * * * *
91966158 CTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* * *
91966203 CTTCAATCTGCTCCACTGTAACTTCAGGGAGATGAGATTTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * * * * *
91966247 CTTCAATTTACTCTATTGCAACTTCAGAGAGATAA-ATTTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTAT
* * * * * *
91966291 CTTTAATATGCTCTATTGCAACTTCAGAGATATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* * * *
91966336 CTTCAATCAGGTCCACTGCAACTTCAAGGAGATTAGATTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* * ** *
91966381 CTTCAATCTGCTCTACTGCAACTTCAGAGAGATGGGATTTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * *
91966425 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* ** * *
91966469 CTTTAATCTGCTGTACTGCAACTTTAGAGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* * *
91966514 CTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGTAACTT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A--T
* * * * * *
91966561 ACAGCTTTAATCTGTTCCATTGTAACTTCAGGGAAATAAGATTCGCTAT
1 ----CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT
* * * * * * *
91966610 CTTCAATTTGCTCCACTGTAACTTTAAGGAGATGAGACTGGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * * * * *
91966654 CTGCAATCTACTCCAGTGCAACTTGAGGGAGATAAGGTTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
* * * ** * *
91966698 CTTTAATTTGCTCTACTATAACTTCAGAGAGATAAGATTTACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-GTAT
*
91966743 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
91966785 GATTTCACTG
Statistics
Matches: 664, Mismatches: 169, Indels: 44
0.76 0.19 0.05
Matches are distributed among these distances:
43 1 0.00
44 349 0.53
45 238 0.36
47 3 0.00
49 3 0.00
51 66 0.10
52 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
Found at i:91966213 original size:96 final size:96
Alignment explanation
Indices: 91965966--91966249 Score: 325
Period size: 96 Copynumber: 3.0 Consensus size: 96
91965956 GAAAGATAAG
* * * * * *
91965966 ACTTGTAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAATCG-TATCTTCAATCTGCT
1 ACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATTCGCTATCTTCAATCTGCT
91966030 CCACTGTAACTTCAAGGAGATAAG----AT-
66 CCACTGTAACTTCAAGGAGATAAGATTTATA
* * * * * * *
91966056 --TTGTAACTTTAATTTGCTCTACTGTAACTTTAGATATATAAGATTTGCTATCTTCAATCTGCT
1 ACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATTCGCTATCTTCAATCTGCT
*
91966119 CCACTGCAACTTCAAGGAGATAAGATTTATA
66 CCACTGTAACTTCAAGGAGATAAGATTTATA
* *
91966150 ACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAG-GAAAATAAGATTCGCTATCTTCAATCTGC
1 ACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAG-AAATAAGATTCGCTATCTTCAATCTGC
* * *
91966214 TCCACTGTAACTTCAGGGAGATGAGATTTGTA
65 TCCACTGTAACTTCAAGGAGATAAGATTTATA
91966246 ACTT
1 ACTT
91966250 CAATTTACTC
Statistics
Matches: 159, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
88 35 0.22
89 38 0.24
93 2 0.01
96 84 0.53
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (96 bp):
ACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATTCGCTATCTTCAATCTGCT
CCACTGTAACTTCAAGGAGATAAGATTTATA
Found at i:91966281 original size:229 final size:221
Alignment explanation
Indices: 91965886--91966783 Score: 732
Period size: 229 Copynumber: 4.0 Consensus size: 221
91965876 AAAGGTATCG
* ** * * * *
91965886 CTTCAATCTGCTGTACTGCAACTTTAGGGAGATGAGA--TTTGTATCTTTAATTTGCTCCACTGC
1 CTTCAATCAGCTCCACTGCAACTTCAAGGAGATAAGATTTTTGTATCTTTAATCTGCTCCACTGC
* * * *
91965949 AACTTCAGAAAGATAAGACTTGTAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAATC
66 AACTTCAGAAA-ATAAGA-TTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATTT
* * * *
91966014 GTATCTTCAATCTGCTCCACTGTAACTTCA-AGGAGATAAGATTTGTAACTTTAATTTGCTCTAC
129 GTAACTTCAATCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTGTAACTTTAATATGCTCTAC
* * *
91966078 TGTAACTTTAGATATATAAGATTTGCTAT
193 TGCAACTTCAGAGATATAAGATTTGCTAT
* * *
91966107 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATAACTTGTAGCTTTAATCTGTTCC
1 CTTCAATCAGCTCCACTGCAACTTCAAGGAGATAAGA-TT-T---TTGTATCTTTAATCTGCTCC
* * *
91966172 ACTGCAACTTCAGGAAAATAAGATTCGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATG
61 ACTGCAACTTCA-GAAAATAAGATT-G-TAACTTCAATCTACTCCACTGCAACTTCAGGGAGATG
* * * *
91966237 AGATTTGTAACTTCAATTTACTCTATTGCAACTTCAGAGAGATAA-ATTTTGTAGCTTTAATATG
123 AGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA-TTTGTAACTTTAATATG
*
91966301 CTCTATTGCAACTTCAGAGATATAAGATTTGCTAT
187 CTCTACTGCAACTTCAGAGATATAAGATTTGCTAT
* * * * *
91966336 CTTCAATCAGGTCCACTGCAACTTCAAGGAGATTAGATTTGT-TATCTTCAATCTGCTCTACTGC
1 CTTCAATCAGCTCCACTGCAACTTCAAGGAGATAAGATTTTTGTATCTTTAATCTGCTCCACTGC
* ** * *
91966400 AACTTCAGAGAGATGGGATTTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGGTTT
66 AACTTCAGA-AAATAAGA-TTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATTT
* * * * * * * * *
91966465 GTAGCTTTAATCTGCTGTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTACTCCAC
129 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG-TAACTTTAATATGCTCTAC
* * *
91966530 TACAACTTCA-AGGAGATAAGATTTGTAACTTACAG
193 TGCAACTTCAGA-GATATAAGATTTG---C-T--AT
* * * * * * * * * *
91966565 CTTTAATCTGTTCCATTGTAACTTCAGGGAAATAAGA--TTCGCTATCTTCAATTTGCTCCACTG
1 CTTCAATCAGCTCCACTGCAACTTCAAGGAGATAAGATTTTTG-TATCTTTAATCTGCTCCACTG
* * * * * * * * * * * *
91966628 TAACTTTAAGGAGATGAGACTGGTATCTGCAATCTACTCCAGTGCAACTTGAGGGAGATAAGGTT
65 CAAC-TTCAGAAAATAAGA-TTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATT
* * * ** * * * * *
91966693 TGTAGCTTTAATTTGCTCTACTATAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGCTCCA
128 TGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTT-GTAACTTTAATATGCTCTA
* * *
91966758 CTGCAACTTTAGGGAGATAAGATTTG
192 CTGCAACTTCAGAGATATAAGATTTG
91966784 TGATTTCACT
Statistics
Matches: 558, Mismatches: 91, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
221 32 0.06
222 77 0.14
223 66 0.12
224 3 0.01
225 1 0.00
226 1 0.00
227 5 0.01
228 39 0.07
229 329 0.59
230 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (221 bp):
CTTCAATCAGCTCCACTGCAACTTCAAGGAGATAAGATTTTTGTATCTTTAATCTGCTCCACTGC
AACTTCAGAAAATAAGATTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATTTGT
AACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTTAATATGCTCTACTGC
AACTTCAGAGATATAAGATTTGCTAT
Found at i:91966428 original size:178 final size:176
Alignment explanation
Indices: 91965899--91966784 Score: 706
Period size: 178 Copynumber: 4.9 Consensus size: 176
91965889 CAATCTGCTG
* * * * * *
91965899 TACTGCAACTTTAGGGAGATGAGATTTGTATCTTTAATTTGCTCCACTGCAACTTCAGAAAGATA
1 TACTGCAACTTCAGAGAGAT-AAATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
* * * *
91965964 AGACTTG-TAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAATCG-TATCTTCAATCT
65 AGATTTGCTATCTTCAATCTACTCCACTACAACTTCAG-GAGATAAGATTCGTTATCTTCAATCT
* * *
91966027 GCTCCACTGTAACTTCA-AGGAGATAAGATTTGTAACTTTAATTTGCTC
129 GCTCCACTGTAACTTCAGA-GAGATGAGATTTGTAACTTCAATTTACTC
* * * * * *
91966075 TACTGTAACTTTAGATATATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCA-AGGAGA
1 TACTGCAACTTCAGAGAGATAA-ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGA-GAGA
* * * ** * * *
91966139 TAAGATTTATAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATC
63 TAAGA-TT-T-GC---TATCTTCAATCTACTCCACTACAACTTCAGG-AGATAAGATTCGTTATC
*
91966204 TTCAATCTGCTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATTTACTC
121 TTCAATCTGCTCCACTGTAACTTCAGAGAGATGAGATTTGTAACTTCAATTTACTC
* * * * *
91966260 TATTGCAACTTCAGAGAGATAAATTTTGTAGCTTTAATATGCTCTATTGCAACTTCAGAGATATA
1 TACTGCAACTTCAGAGAGATAAA-TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
* * * *
91966325 AGATTTGCTATCTTCAATC-AGGTCCACTGCAACTTCAAGGAGATTAGATTTGTTATCTTCAATC
65 AGATTTGCTATCTTCAATCTA-CTCCACTACAACTTC-AGGAGATAAGATTCGTTATCTTCAATC
* * * *
91966389 TGCTCTACTGCAACTTCAGAGAGATGGGATTTGTAACTTCAATCTACTC
128 TGCTCCACTGTAACTTCAGAGAGATGAGATTTGTAACTTCAATTTACTC
* * * ** *
91966438 CACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTGTACTGCAACTTTAGAGAGATA
1 TACTGCAACTTCAGAGAGATAA-ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
* *
91966503 AGATTTGCTATCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGTAACTTACAGCTT
65 AGATTTGCTATCTTCAATCTACTCCACTACAACTTC-AGGAGATAAGATTCG----TT--ATCTT
* * * * * * * * *
91966568 TAATCTGTTCCATTGTAACTTCAGGGAAATAAGATTCGCTATCTTCAATTTGCTC
123 CAATCTGCTCCACTGTAACTTCAGAGAGATGAGATTTG-TAACTTCAATTTACTC
* * * * * * * ** * * * *
91966623 CACTGTAACTTTA-AGGAGATGAGACTGGTATCTGCAATCTACTCCAGTGCAACTTGAGGGAGAT
1 TACTGCAACTTCAGA-GAGAT-AAATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGAT
* * * * * * * ***
91966687 AAGGTTTG-TAGCTTTAATTTGCTCTACTATAACTTCAGAGAGATAAGATTTACTATCTTCAATC
64 AAGATTTGCTATCTTCAATCTACTCCACTACAACTTCAG-GAGATAAGATTCGTTATCTTCAATC
* * * *
91966751 TGCTCCACTGCAACTTTAGGGAGATAAGATTTGT
128 TGCTCCACTGTAACTTCAGAGAGATGAGATTTGT
91966785 GATTTCACTG
Statistics
Matches: 575, Mismatches: 106, Indels: 57
0.78 0.14 0.08
Matches are distributed among these distances:
175 1 0.00
176 22 0.04
177 36 0.06
178 225 0.39
179 5 0.01
180 1 0.00
181 1 0.00
182 3 0.01
183 5 0.01
184 133 0.23
185 142 0.25
186 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (176 bp):
TACTGCAACTTCAGAGAGATAAATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAA
GATTTGCTATCTTCAATCTACTCCACTACAACTTCAGGAGATAAGATTCGTTATCTTCAATCTGC
TCCACTGTAACTTCAGAGAGATGAGATTTGTAACTTCAATTTACTC
Found at i:91966735 original size:407 final size:407
Alignment explanation
Indices: 91965885--91966784 Score: 1212
Period size: 407 Copynumber: 2.2 Consensus size: 407
91965875 CAAAGGTATC
* * * * * * * * *
91965885 GCTTCAATCTGCTGTACTGCAACTTTAGGGAGATGAGATTTG-TATCTTTAATTTGCTCCACTGC
1 GCTTTAATATGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* *
91965949 AACTTC-AGAAAGATAAGACTTG-TAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAA
66 AACTTCAAG-GAGATAAGATTTGTTAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAA
* * * *
91966012 TCGTATCTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTGTAACTTTAATTTGCTCTA
130 TCGTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCTA
* * * * *
91966077 CTGTAACTTTAGATATATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAA
195 CTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTACAACTTCAAGGAGATAA
**
91966142 GATTTATAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTC
260 GATTTATAACTTACAGCTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTC
* * * * * * *
91966207 AATCTGCTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATTTACTCTATTGCAACTTC
325 AATCTGCTCCACTGTAACTTCAAGGAGATGAGACTGGTAACTGCAATCTACTCCAGTGCAACTTC
*
91966272 AGAGAGATAAATTTTGTA
390 AGAGAGATAAAGTTTGTA
* * * * *
91966290 GCTTTAATATGCTCTATTGCAACTTCAGAGATATAAGATTTGCTATCTTCAATCAGGTCCACTGC
1 GCTTTAATATGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* * * * * * *
91966355 AACTTCAAGGAGATTAGATTTGTTATCTTCAATCTGCTCTACTGCAACTTCAGAGAGATGGGATT
66 AACTTCAAGGAGATAAGATTTGTTAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAAT
* * * * *
91966420 TGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTGTAC
131 CGTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCTAC
91966485 TGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTACAACTTCAAGGAGATAAG
196 TGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTACAACTTCAAGGAGATAAG
* * * *
91966550 ATTTGTAACTTACAGCTTTAATCTGTTCCATTGTAACTTCAGGGAAATAAGATTCGCTATCTTCA
261 ATTTATAACTTACAGCTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTCA
* * * *
91966615 ATTTGCTCCACTGTAACTTTAAGGAGATGAGACTGGTATCTGCAATCTACTCCAGTGCAACTTGA
326 ATCTGCTCCACTGTAACTTCAAGGAGATGAGACTGGTAACTGCAATCTACTCCAGTGCAACTTCA
* *
91966680 GGGAGATAAGGTTTGTA
391 GAGAGATAAAGTTTGTA
* * *
91966697 GCTTTAATTTGCTCTACTATAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGCTCCACTGC
1 GCTTTAATATGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* *
91966762 AACTTTAGGGAGATAAGATTTGT
66 AACTTCAAGGAGATAAGATTTGT
91966785 GATTTCACTG
Statistics
Matches: 426, Mismatches: 66, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
405 34 0.08
406 34 0.08
407 358 0.84
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (407 bp):
GCTTTAATATGCTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
AACTTCAAGGAGATAAGATTTGTTAACTTCAATCTACTCCACTACAACTTCAGAGAGATGAGAAT
CGTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCTAC
TGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTACAACTTCAAGGAGATAAG
ATTTATAACTTACAGCTTTAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTCA
ATCTGCTCCACTGTAACTTCAAGGAGATGAGACTGGTAACTGCAATCTACTCCAGTGCAACTTCA
GAGAGATAAAGTTTGTA
Found at i:91973884 original size:86 final size:86
Alignment explanation
Indices: 91973739--91973908 Score: 295
Period size: 86 Copynumber: 2.0 Consensus size: 86
91973729 TAATGAATTT
* *
91973739 GGATTTTAGAGTGTTTATGAAAAACATTGTTGTCTCCTTCTCCACAAGAGGTGGTTGGACTTGCG
1 GGATTTTAGAGTGTTTATGAAAAACATTGTTGCCTCCTTCTCCACAAGAAGTGGTTGGACTTGCG
91973804 TTGCCACCTCTCTCCATCTTG
66 TTGCCACCTCTCTCCATCTTG
* * *
91973825 GGATTTTAGAGTGTTTATGAAAAGCATTGTTGCCTTCTTCTCCAGAAGAAGTGGTTGGACTTGCG
1 GGATTTTAGAGTGTTTATGAAAAACATTGTTGCCTCCTTCTCCACAAGAAGTGGTTGGACTTGCG
91973890 TTGCCACCTCTCTCCATCT
66 TTGCCACCTCTCTCCATCT
91973909 CTAAGCATAC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (86 bp):
GGATTTTAGAGTGTTTATGAAAAACATTGTTGCCTCCTTCTCCACAAGAAGTGGTTGGACTTGCG
TTGCCACCTCTCTCCATCTTG
Found at i:91974914 original size:19 final size:20
Alignment explanation
Indices: 91974890--91974941 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
91974880 AGGGTCTTTT
*
91974890 ATGAAATTTAATGCAT-AT-A
1 ATGAAATGTAATGC-TGATGA
91974909 ATGAAATGTAATGCTGATGA
1 ATGAAATGTAATGCTGATGA
91974929 ATGAAATG-AATGC
1 ATGAAATGTAATGC
91974942 AAAAAAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 1 0.03
19 20 0.67
20 9 0.30
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCTGATGA
Found at i:91975336 original size:21 final size:21
Alignment explanation
Indices: 91975307--91975346 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
91975297 TGCAATGTGG
*
91975307 TCTTGAGCTCTTCTATCTTTC
1 TCTTCAGCTCTTCTATCTTTC
91975328 TCTTCAGCTCTTCTATCTT
1 TCTTCAGCTCTTCTATCTT
91975347 ATTTAGGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.30, G:0.07, T:0.53
Consensus pattern (21 bp):
TCTTCAGCTCTTCTATCTTTC
Found at i:91975756 original size:21 final size:21
Alignment explanation
Indices: 91975730--91975801 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
91975720 GTTTCTTCTT
91975730 CCAACTATTCTATCTTTTTCC
1 CCAACTATTCTATCTTTTTCC
* * *
91975751 CCAACTCCAAACTCCTCTCTTCTT--
1 CCAACT----A-TTCTATCTTTTTCC
91975775 CCAACTATTCTATCTTTTTCC
1 CCAACTATTCTATCTTTTTCC
91975796 CCAACT
1 CCAACT
91975802 CCAAACTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
19 9 0.24
20 1 0.03
21 12 0.32
24 6 0.16
25 1 0.03
26 9 0.24
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.40
Consensus pattern (21 bp):
CCAACTATTCTATCTTTTTCC
Found at i:91975772 original size:45 final size:45
Alignment explanation
Indices: 91975723--91975811 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
91975713 ACGCATTGTT
91975723 TCTTCTTCCAACTATTCTATCTTTTTCCCCAACTCCAAACTCCTC
1 TCTTCTTCCAACTATTCTATCTTTTTCCCCAACTCCAAACTCCTC
91975768 TCTTCTTCCAACTATTCTATCTTTTTCCCCAACTCCAAACTCCT
1 TCTTCTTCCAACTATTCTATCTTTTTCCCCAACTCCAAACTCCT
91975812 TTTTTCAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.40
Consensus pattern (45 bp):
TCTTCTTCCAACTATTCTATCTTTTTCCCCAACTCCAAACTCCTC
Found at i:91981463 original size:3 final size:3
Alignment explanation
Indices: 91981437--91981512 Score: 125
Period size: 3 Copynumber: 25.3 Consensus size: 3
91981427 ATATGAAAGT
* * *
91981437 ATA ATG ATA ATG ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91981485 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
91981513 CAACAACAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91981517 original size:3 final size:3
Alignment explanation
Indices: 91981511--91981544 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
91981501 TAATAATAAT
* *
91981511 AAC AAC AAC AAT AAC AAC AAC AAC AAC AAT AAC A
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A
91981545 TGAACAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.68, C:0.26, G:0.00, T:0.06
Consensus pattern (3 bp):
AAC
Found at i:91981523 original size:12 final size:12
Alignment explanation
Indices: 91981508--91981544 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
91981498 TAATAATAAT
91981508 AATAACAACAAC
1 AATAACAACAAC
91981520 AATAACAACAAC
1 AATAACAACAAC
* *
91981532 AACAACAATAAC
1 AATAACAACAAC
91981544 A
1 A
91981545 TGAACAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (12 bp):
AATAACAACAAC
Found at i:91981759 original size:28 final size:27
Alignment explanation
Indices: 91981713--91981768 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
91981703 AATTTTAAAT
* *
91981713 ATAAATAGAAGAAATAATAAGTAAATAA
1 ATAAATAAAAGAAAAAATAA-TAAATAA
* *
91981741 ATAAATAAAATAAAAAATAATACATAA
1 ATAAATAAAAGAAAAAATAATAAATAA
91981768 A
1 A
91981769 AATTAGACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (27 bp):
ATAAATAAAAGAAAAAATAATAAATAA
Found at i:91985396 original size:53 final size:53
Alignment explanation
Indices: 91985324--91985431 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
91985314 TACCTTTCCT
* ** * *
91985324 TTTTAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCC
1 TTTTAAACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCC
* * *
91985377 TTTTGAACTCACCATTGCCATACCTTGGCATGGTCTTACATGGGATCTTTGCC
1 TTTTAAACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCC
91985430 TT
1 TT
91985432 ACAGTAGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (53 bp):
TTTTAAACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCC
Found at i:91991951 original size:53 final size:54
Alignment explanation
Indices: 91991866--91992069 Score: 212
Period size: 53 Copynumber: 3.8 Consensus size: 54
91991856 TTCCTCTTTA
* * * * *
91991866 AACTTACCATTTCCATGTCTTAACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
91991919 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
91991973 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
91992028 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
91992070 ATTAAGCCCT
Statistics
Matches: 120, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.37
54 35 0.29
55 41 0.34
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:91992005 original size:55 final size:53
Alignment explanation
Indices: 91991878--91992061 Score: 170
Period size: 55 Copynumber: 3.4 Consensus size: 53
91991868 CTTACCATTT
* * * *
91991878 CCATGTCTTAACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * * ** * *
91991931 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATG
*** * * *
91991986 CCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTGTAGAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-GAACTCACCAATG
* *
91992040 CCATGCCTTGGCATGGTCTTAC
1 CCATGTCTTGACATGGTCTTAC
91992062 TTGGTATCAT
Statistics
Matches: 105, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 34 0.32
54 30 0.29
55 41 0.39
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:91995271 original size:22 final size:23
Alignment explanation
Indices: 91995226--91995277 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
91995216 AAAGGTAGTA
*
91995226 AATAAAAAAATTAAATATAATTT
1 AATATAAAAATTAAATATAATTT
**
91995249 AATATAAAAATTAAA-ATCTTTT
1 AATATAAAAATTAAATATAATTT
91995271 AATATAA
1 AATATAA
91995278 TTTAATATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AATATAAAAATTAAATATAATTT
Found at i:91996070 original size:16 final size:16
Alignment explanation
Indices: 91996049--91996083 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
91996039 TGAATTATTG
91996049 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
91996065 ATTACAACTTTATTCC
1 ATTACAACTCTATTCC
91996081 ATT
1 ATT
91996084 TCAGCCCTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:91998263 original size:43 final size:43
Alignment explanation
Indices: 91998129--91998274 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
91998119 AATGAAAGTA
* * * * *
91998129 TCCCAGACGTGGTCTTACATGCT-ATCTCATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACG-TAATCACATATCGATTCCAATG
* * * * *
91998172 TCCTAGACAGGGTCTTACACG-AGTCAAATA-CGATGT-CGATG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGAT-TCCAATG
91998213 TCCCAGACATGGTCTTACACGTAATCACATATCGATTCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATTCCAATG
*
91998256 TCCCAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
91998275 TAAGAACACA
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 26 0.32
42 13 0.16
43 43 0.52
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATTCCAATG
Found at i:92002879 original size:7 final size:7
Alignment explanation
Indices: 92002867--92002891 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92002857 ACTTGTTTCA
92002867 TATTTAG
1 TATTTAG
92002874 TATTTAG
1 TATTTAG
92002881 TATTTAG
1 TATTTAG
92002888 TATT
1 TATT
92002892 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:92003500 original size:18 final size:18
Alignment explanation
Indices: 92003477--92003514 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
92003467 TGCCAGGCGC
*
92003477 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
92003495 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
92003513 GT
1 GT
92003515 TTCTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:92007445 original size:125 final size:126
Alignment explanation
Indices: 92007074--92007468 Score: 530
Period size: 126 Copynumber: 3.1 Consensus size: 126
92007064 GGCCAAGCAT
* *
92007074 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTGACATTGCTTC
1 GAACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTGACATTGCATC
* ** *
92007139 CTGCTTGAAGCATTTTTTTG-CACTATTTGTTCAGAAAAGTCTTCTTGAAATTATTTTTTTAG
66 CTGCTTGAAGC--CTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
* * * * * *
92007201 GAACTACTATAGATGAACAGTA--TCCACGTGGGAGTTTTTTTCAGAAATTTTGCTGACACTGCA
1 GAACTACTGTAGA--AAAAGAACGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTGACATTGCA
* *
92007264 TCCTGCTTGAAGCGTTTTTGACACTATATGTTCAGAAACA-TCTTCTCAAAATTATTTTTTCAG
64 TCCTGCTTGAAGCCTTTTTGACACTATTTGTTCAGAAA-AGTCTTCTCAAAATTATTTTTTCAG
* * *
92007327 GAACTATTGTAGAAAAAGAACGTCTACGTGGGAGCTTTTTTCATAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTGACATTGCATC
* *
92007392 ATCCTTGAA-CCTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCCTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
*
92007452 GAACTAATGTAGAAAAA
1 GAACTACTGTAGAAAAA
92007469 CCATAAACCC
Statistics
Matches: 235, Mismatches: 26, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
124 6 0.03
125 69 0.29
126 93 0.40
127 63 0.27
129 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTGACATTGCATC
CTGCTTGAAGCCTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
Found at i:92007584 original size:35 final size:35
Alignment explanation
Indices: 92007538--92007616 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 35
92007528 AAATCTACTA
* *
92007538 AAACCTTAAACCTTAACTTATTTTAACAAAAACCT
1 AAACCCTAAACCCTAACTTATTTTAACAAAAACCT
*
92007573 AAACCCTAAACCCTAACTTATTTTAACAAAACCCT
1 AAACCCTAAACCCTAACTTATTTTAACAAAAACCT
92007608 -AACCCTAAA
1 AAACCCTAAA
92007617 AAACTTAGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 9 0.22
35 32 0.78
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.27
Consensus pattern (35 bp):
AAACCCTAAACCCTAACTTATTTTAACAAAAACCT
Found at i:92009407 original size:30 final size:30
Alignment explanation
Indices: 92009373--92009436 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
92009363 ACGGGCTGAG
* *
92009373 CACACACCCGTGTGATTCACACGAGCTGGC
1 CACACACCCCTGTGATCCACACGAGCTGGC
*
92009403 CACACGCCCCTGTGATCCACACGAGCTGGC
1 CACACACCCCTGTGATCCACACGAGCTGGC
92009433 CACA
1 CACA
92009437 TGCCCATGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.41, G:0.22, T:0.14
Consensus pattern (30 bp):
CACACACCCCTGTGATCCACACGAGCTGGC
Found at i:92013921 original size:2 final size:2
Alignment explanation
Indices: 92013914--92013955 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
92013904 ATACAAGCAT
92013914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92013956 ACAAATTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92018756 original size:2 final size:2
Alignment explanation
Indices: 92018749--92018775 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
92018739 GAGTGATGTT
92018749 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
92018776 TTGATATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92022856 original size:15 final size:14
Alignment explanation
Indices: 92022827--92022870 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
92022817 CCGCATTTTC
*
92022827 TTTACTTTCTTTAT
1 TTTATTTTCTTTAT
*
92022841 TTTCTTTTCTTTTAT
1 TTTATTTTC-TTTAT
*
92022856 TTTATTTTATTTAT
1 TTTATTTTCTTTAT
92022870 T
1 T
92022871 CCTTTGATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTTCTTTAT
Found at i:92024647 original size:5 final size:5
Alignment explanation
Indices: 92024637--92024696 Score: 75
Period size: 5 Copynumber: 11.0 Consensus size: 5
92024627 CATTGAGTCC
92024637 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTTT ATTTTT AGTTTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT A-TTTT A-TTTT A--TTTT
92024687 ATTTT ATTTT
1 ATTTT ATTTT
92024697 TCTGTTTATT
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
5 30 0.57
6 17 0.32
7 6 0.11
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:92024669 original size:6 final size:6
Alignment explanation
Indices: 92024638--92024714 Score: 83
Period size: 6 Copynumber: 13.5 Consensus size: 6
92024628 ATTGAGTCCA
92024638 TTTTA- TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT TTTTAGT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T
* * *
92024683 TTTTA- TTTTAT TTTTCT GTTTAT TTGTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
92024715 CTTAAACTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
5 25 0.40
6 32 0.51
7 6 0.10
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:92024689 original size:30 final size:28
Alignment explanation
Indices: 92024638--92024714 Score: 95
Period size: 30 Copynumber: 2.8 Consensus size: 28
92024628 ATTGAGTCCA
92024638 TTTTA-TTTTA-TTTTATTTTATTTTAT
1 TTTTATTTTTATTTTTATTTTATTTTAT
92024664 TTTTATTTTTATTTTTAGTTTTTATTTTAT
1 TTTTATTTTTATTTTTA--TTTTATTTTAT
* * *
92024694 TTTTCTGTTTATTTGTATTTT
1 TTTTATTTTTATTTTTATTTT
92024715 CTTAAACTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 5 0.11
27 5 0.11
28 9 0.20
30 25 0.57
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.79
Consensus pattern (28 bp):
TTTTATTTTTATTTTTATTTTATTTTAT
Found at i:92025125 original size:7 final size:7
Alignment explanation
Indices: 92025113--92025138 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
92025103 CCTAGATGAA
92025113 TTGGGCT
1 TTGGGCT
92025120 TTGGGCT
1 TTGGGCT
92025127 TTGGGCT
1 TTGGGCT
92025134 TTGGG
1 TTGGG
92025139 TCTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:92026662 original size:29 final size:29
Alignment explanation
Indices: 92026622--92026719 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 29
92026612 AATGTGACTA
*
92026622 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
92026651 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
92026680 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
92026708 GGCTTAATGGGC
1 GGCCTAATGGGC
92026720 TAGATACAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
28 14 0.23
29 47 0.77
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:92026692 original size:58 final size:57
Alignment explanation
Indices: 92026622--92026730 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
92026612 AATGTGACTA
* *
92026622 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATTTG
* * * *
92026680 GGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCTAGATACAGGT
1 GGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
92026731 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (57 bp):
GGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATTTG
Found at i:92026717 original size:28 final size:29
Alignment explanation
Indices: 92026607--92026719 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 29
92026597 GTGAGCATCA
* * *
92026607 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
92026635 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
92026664 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
92026693 ATATGAATATGA-TTGGGCTTAATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
92026720 TAGATACAGG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:92033387 original size:26 final size:26
Alignment explanation
Indices: 92033356--92033489 Score: 216
Period size: 26 Copynumber: 5.2 Consensus size: 26
92033346 TGAAATTCCC
92033356 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
92033382 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
92033408 ATCATGGAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
92033434 ATCATGAAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
*
92033460 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
92033486 ATCA
1 ATCA
92033490 ATTTGTATCA
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
25 3 0.03
26 93 0.94
27 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:92036581 original size:40 final size:40
Alignment explanation
Indices: 92036536--92036703 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
92036526 CGGAATATAA
92036536 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
92036576 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
92036616 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
92036656 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
92036696 CCGGATAT
1 CCGGATAT
92036704 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92038681 original size:25 final size:25
Alignment explanation
Indices: 92038647--92038697 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
92038637 TTATGTTAAA
*
92038647 TGATGAATTTGGAATGTTGATTGAT
1 TGATGAATTTCGAATGTTGATTGAT
92038672 TGATGAATTTCGAATGTTGATTGAT
1 TGATGAATTTCGAATGTTGATTGAT
92038697 T
1 T
92038698 ATTAAAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (25 bp):
TGATGAATTTCGAATGTTGATTGAT
Found at i:92040449 original size:47 final size:48
Alignment explanation
Indices: 92040382--92040650 Score: 188
Period size: 47 Copynumber: 5.7 Consensus size: 48
92040372 TGGGTTATGT
* *
92040382 GAGCTAGTGTAA-AGCATGTCTGGGACAT-GCATCAGCCACAT-A-ATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACATGAGA-GA
* *
92040428 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCA--AAATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACA-TGAGA-GA
* * * * *
92040476 GAGCTAGTGTAAGA-CATGTCCGGGACAT-GCATCGACCTCGTGA-AGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCACATGAGAG-A
* * * *
92040523 -AGCCAGTGTAAGACCATGTCTAGGACATGGCAT-TG-ACACGTACAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATG-AGAGA
* * * * * *
92040569 GGTGTCAGTGTAAGACCATGTCTGAGACATGGCAT-TG-ACTTGAGACA
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATGAGAGA
92040616 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
92040651 TGGTATTATA
Statistics
Matches: 177, Mismatches: 31, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
45 4 0.02
46 32 0.18
47 78 0.44
48 63 0.36
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATGAGAGA
Found at i:92040543 original size:94 final size:94
Alignment explanation
Indices: 92040382--92040555 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 94
92040372 TGGGTTATGT
*
92040382 GAGCTAGTGTAAAGCATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAAGCATGTCCGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATG
* *
92040447 TCTGGGATATGGCATCAAAATTGAGACGA
66 TCTAGGACATGGCATCAAAATTGAGACGA
* *
92040476 GAGCTAGTGT-AAGACATGTCCGGGACATGCATC-GACCTCGTGAA-GTA-AGCCAGTGTAAGAC
1 GAGCTAGTGTAAAG-CATGTCCGGGACATGCATCAG-CCACAT-AATG-AGAGCCAGTGTAAGAC
92040537 CATGTCTAGGACATGGCAT
62 CATGTCTAGGACATGGCAT
92040556 TGACACGTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
93 4 0.06
94 64 0.90
95 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (94 bp):
GAGCTAGTGTAAAGCATGTCCGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATG
TCTAGGACATGGCATCAAAATTGAGACGA
Found at i:92040651 original size:47 final size:47
Alignment explanation
Indices: 92040428--92040652 Score: 206
Period size: 47 Copynumber: 4.8 Consensus size: 47
92040418 CACATAATGA
* ** * *
92040428 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAAAATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACTCGAGAC-AT
* * * *
92040476 GAGCTAGTGTAAGA-CATGTCCGGGACAT-GCATCGACCTCGTGA-AGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CTCGAGACA-T
* * * * * *
92040522 AAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGACACGTACAGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTCG-AGACAT
* * * *
92040570 GTGTCAGTGTAAGACCATGTCTGAGACATGGCATTGACTTGAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTCGAGACAT
92040617 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTG
92040653 GTATTATACC
Statistics
Matches: 140, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 20 0.14
47 63 0.45
48 54 0.39
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTCGAGACAT
Found at i:92041892 original size:49 final size:49
Alignment explanation
Indices: 92041816--92041910 Score: 165
Period size: 49 Copynumber: 1.9 Consensus size: 49
92041806 TTATTTTTCA
92041816 AAGTTCTTAAAATGACCTAAATAGGTCCCGAATGGTTTGAAATGAATGT
1 AAGTTCTTAAAATGACCTAAATAGGTCCCGAATGGTTTGAAATGAATGT
*
92041865 AAGTTCTTAAAATGATCC-AAATCGGTCCCGAATGGTTTGAAATGAA
1 AAGTTCTTAAAATGA-CCTAAATAGGTCCCGAATGGTTTGAAATGAA
92041911 CATTTTACAC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 42 0.95
50 2 0.05
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (49 bp):
AAGTTCTTAAAATGACCTAAATAGGTCCCGAATGGTTTGAAATGAATGT
Found at i:92047307 original size:13 final size:13
Alignment explanation
Indices: 92047289--92047313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92047279 GTAAGTGATT
92047289 TTGATGATTTTTC
1 TTGATGATTTTTC
92047302 TTGATGATTTTT
1 TTGATGATTTTT
92047314 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:92048147 original size:94 final size:94
Alignment explanation
Indices: 92047981--92048156 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 94
92047971 GGTTATTGTA
* * * * ***
92047981 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTGGTGTAAGACCATAT
1 AGCTAGTGTAAGACATGTCCGAGACATGCATCGGCCACATGAAGAGAGCCAATGTAAGACCATAT
* *
92048046 CTGGGACATGGTATCAGTATTGAGATGAG
66 CTAGGACATGGCATCAGTATTGAGATGAG
* * *
92048075 AGCTAGTGTAAGACATGTCCGAGACATGCATCGGCCTCGTGAAGTA-AGCCAATGTAAGACCATG
1 AGCTAGTGTAAGACATGTCCGAGACATGCATCGGCCACATGAAG-AGAGCCAATGTAAGACCATA
92048139 TCTAGGACATGGCATCAG
65 TCTAGGACATGGCATCAG
92048157 CACGTATAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCCGAGACATGCATCGGCCACATGAAGAGAGCCAATGTAAGACCATAT
CTAGGACATGGCATCAGTATTGAGATGAG
Found at i:92048178 original size:48 final size:50
Alignment explanation
Indices: 92048124--92048255 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 50
92048114 TGAAGTAAGC
* * *
92048124 CAATGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAA-AG-GTGT
1 CAATGTAAGACCATGTCTAGGACATGGCATCAACACGAATAAGAGAGAGT
* * *
92048172 CAATGTAAGACCATGTTTGGGACATGGCA-CTAACACGAATAAGCGAGAGT
1 CAATGTAAGACCATGTCTAGGACATGGCATC-AACACGAATAAGAGAGAGT
* * *
92048222 TAGTGTGAGACCATGTCTAGGACATGGCATCAAC
1 CAATGTAAGACCATGTCTAGGACATGGCATCAAC
92048256 TTGAGGCATG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 36 0.52
49 1 0.01
50 30 0.43
51 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (50 bp):
CAATGTAAGACCATGTCTAGGACATGGCATCAACACGAATAAGAGAGAGT
Found at i:92052362 original size:11 final size:11
Alignment explanation
Indices: 92052348--92052372 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92052338 AATTTTTGGG
92052348 AAAATAAAATA
1 AAAATAAAATA
92052359 AAAATAAAATA
1 AAAATAAAATA
92052370 AAA
1 AAA
92052373 TCTATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:92052819 original size:20 final size:20
Alignment explanation
Indices: 92052786--92052823 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92052776 GCCATATAAT
92052786 TTGGCTTGTGTTATGGTATC
1 TTGGCTTGTGTTATGGTATC
92052806 TTGG-TTGTGATTATGGTA
1 TTGGCTTGTG-TTATGGTA
92052824 ATTTGAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.13, C:0.05, G:0.32, T:0.50
Consensus pattern (20 bp):
TTGGCTTGTGTTATGGTATC
Found at i:92055559 original size:2 final size:2
Alignment explanation
Indices: 92055552--92055582 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
92055542 TATATGTATT
92055552 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
92055583 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:92055587 original size:2 final size:2
Alignment explanation
Indices: 92055582--92055615 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
92055572 ACACACACAC
*
92055582 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92055616 TCAATTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92060846 original size:20 final size:20
Alignment explanation
Indices: 92060821--92060859 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
92060811 TCAAATGCAC
92060821 TTTGAATTACTCGATTTCGG
1 TTTGAATTACTCGATTTCGG
*
92060841 TTTGAATTATTCGATTTCG
1 TTTGAATTACTCGATTTCG
92060860 AGTTCGGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.49
Consensus pattern (20 bp):
TTTGAATTACTCGATTTCGG
Found at i:92061918 original size:45 final size:45
Alignment explanation
Indices: 92061867--92061956 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
92061857 AGAATAAAGA
*
92061867 ATAAATATTCAAAATAATAATGATCATCGATAAAAGTAATATATT
1 ATAAATATTCAAAATAATAATGATAATCGATAAAAGTAATATATT
*
92061912 ATAAATATTCAAAATAATAATGATAATTGATAAAAGTAATATATT
1 ATAAATATTCAAAATAATAATGATAATCGATAAAAGTAATATATT
92061957 TTAATCTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.34
Consensus pattern (45 bp):
ATAAATATTCAAAATAATAATGATAATCGATAAAAGTAATATATT
Found at i:92061951 original size:22 final size:21
Alignment explanation
Indices: 92061877--92061952 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 21
92061867 ATAAATATTC
* *
92061877 AAAATAATAATGATCATCGAT
1 AAAATAATAATGATAATTGAT
* *
92061898 AAAAGTAATATATTATAAAT-ATT
1 AAAA-TAATA-ATGATAATTGA-T
92061921 CAAAATAATAATGATAATTGAT
1 -AAAATAATAATGATAATTGAT
92061943 AAAAGTAATA
1 AAAA-TAATA
92061953 TATTTTAATC
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
21 8 0.19
22 19 0.44
23 12 0.28
24 4 0.09
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.32
Consensus pattern (21 bp):
AAAATAATAATGATAATTGAT
Found at i:92070582 original size:2 final size:2
Alignment explanation
Indices: 92070575--92070599 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92070565 TACCCAGATA
92070575 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
92070600 ACCAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:92073653 original size:43 final size:43
Alignment explanation
Indices: 92073595--92073680 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
92073585 AGTTAAGTAT
*
92073595 TATAAATACTTAGTAAGATCCTACAATAGAAACAATTAGCTTA
1 TATAAATACATAGTAAGATCCTACAATAGAAACAATTAGCTTA
*
92073638 TATAAATACATAGTAAGCTCCTACAATAGAAACAATTAGCTTA
1 TATAAATACATAGTAAGATCCTACAATAGAAACAATTAGCTTA
92073681 CCCTATTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (43 bp):
TATAAATACATAGTAAGATCCTACAATAGAAACAATTAGCTTA
Found at i:92075321 original size:46 final size:44
Alignment explanation
Indices: 92075217--92075324 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
92075207 TGTCTTTGAC
** * * *
92075217 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
92075261 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
92075307 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
92075325 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:92082709 original size:46 final size:44
Alignment explanation
Indices: 92082605--92082712 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
92082595 TGTCTTTGAC
** * * *
92082605 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
92082649 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
92082695 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
92082713 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:92086428 original size:17 final size:17
Alignment explanation
Indices: 92086406--92086438 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92086396 CATCTCGCAT
*
92086406 TTTATTTCTTTTATTAC
1 TTTATTTATTTTATTAC
92086423 TTTATTTATTTTATTA
1 TTTATTTATTTTATTA
92086439 TTAACATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTATTTTATTAC
Found at i:92090036 original size:29 final size:29
Alignment explanation
Indices: 92090004--92090077 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
92089994 GATTCAAGCC
* * *
92090004 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACAGTACAAACT
* *
92090033 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACAGTACAAACT
92090062 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
92090078 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACAGTACAAACT
Found at i:92094072 original size:37 final size:37
Alignment explanation
Indices: 92094008--92094182 Score: 287
Period size: 37 Copynumber: 4.7 Consensus size: 37
92093998 AGCTCAGACG
* *
92094008 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
92094045 AAATCTCCACACGTAGTCATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
92094082 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
92094119 TACTCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
92094156 TAATCTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
92094183 CACTCGGAAT
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:92094405 original size:47 final size:47
Alignment explanation
Indices: 92094353--92094819 Score: 727
Period size: 47 Copynumber: 9.9 Consensus size: 47
92094343 TTTCACACTA
* * * * *
92094353 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92094400 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
92094447 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92094494 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92094541 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92094588 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
92094635 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
92094682 GCCATTCGGCCTTATCACACATATGCATGCTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
92094729 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
92094776 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACA
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACA
92094820 GAAAATCCTA
Statistics
Matches: 387, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 387 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Done.