Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 305 of 378
Found at i:92412146 original size:77 final size:77
Alignment explanation
Indices: 92412000--92412148 Score: 181
Period size: 77 Copynumber: 1.9 Consensus size: 77
92411990 TTTGAAGTTT
* * * * ** *
92412000 TTTTTTATGCATTTTGAAAATTCGAGTACCCAATTGCGTGAAAAAAATTAGGGGTTTAATTGCCT
1 TTTTTGATGCATTTTGAAAATTCAAGTACCCAATTGAGTAAAAAAAAAAAGGGGCTTAATTGCCT
92412065 TTTTTGATGGCC
66 TTTTTGATGGCC
* * *
92412077 TTTTTGATGCATTTTGAAAGTTCAAGTGCTCAATTGAGTAAAAAAAAAAAGAGAGGCTTAATTGC
1 TTTTTGATGCATTTTGAAAATTCAAGTACCCAATTGAGTAAAAAAAAAAAG-G-GGCTTAATTGC
*
92412142 TTTTTTT
64 CTTTTTT
92412149 ATTTAAGTTT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 42 0.71
78 1 0.02
79 16 0.27
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (77 bp):
TTTTTGATGCATTTTGAAAATTCAAGTACCCAATTGAGTAAAAAAAAAAAGGGGCTTAATTGCCT
TTTTTGATGGCC
Found at i:92416969 original size:12 final size:12
Alignment explanation
Indices: 92416952--92416984 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
92416942 CTTCGTCGAT
92416952 CACACGGCCTAC
1 CACACGGCCTAC
92416964 CACACGGCCTAC
1 CACACGGCCTAC
*
92416976 CACATGGCC
1 CACACGGCC
92416985 GTGTGGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.48, G:0.18, T:0.09
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:92419879 original size:46 final size:46
Alignment explanation
Indices: 92419826--92419999 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
92419816 TGTAACCAGC
* *
92419826 CCATAAGTGAACTCGGACTCAACTCAAGGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
92419872 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
92419922 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
92419965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
92420000 AATGCTCAAC
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.56
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:92419942 original size:93 final size:93
Alignment explanation
Indices: 92419834--92420004 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
92419824 GCCCATAAGT
* *
92419834 GAACTCGGACTCAACTCAAGGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92419899 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
92419927 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92419992 CGAGTTCGAATGC
66 CGAGTTCGAATGC
92420005 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:92427477 original size:24 final size:25
Alignment explanation
Indices: 92427435--92427483 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
92427425 TCTTACTTGC
92427435 AATTATTCACATAAAATCATCTACCA
1 AATTATT-ACATAAAATCATCTACCA
* *
92427461 AATTATT-CATAATATCATTTACC
1 AATTATTACATAAAATCATCTACC
92427484 TTTCACTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (25 bp):
AATTATTACATAAAATCATCTACCA
Found at i:92435652 original size:7 final size:7
Alignment explanation
Indices: 92435640--92435680 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
92435630 TATATGCAAA
92435640 AAAATAT
1 AAAATAT
92435647 AAAATAT
1 AAAATAT
92435654 AAAATAT
1 AAAATAT
92435661 AAAAT-T
1 AAAATAT
*
92435667 ATAGATAT
1 A-AAATAT
92435675 AAAATA
1 AAAATA
92435681 AATTCAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 2 0.07
7 26 0.87
8 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (7 bp):
AAAATAT
Found at i:92439451 original size:3 final size:3
Alignment explanation
Indices: 92439443--92439526 Score: 168
Period size: 3 Copynumber: 28.0 Consensus size: 3
92439433 CTCTCTTATG
92439443 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92439491 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92439527 CCAATTGTAG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:92450168 original size:14 final size:14
Alignment explanation
Indices: 92450149--92450177 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
92450139 ATTTAGTCCC
92450149 TAAAATCAAAGATA
1 TAAAATCAAAGATA
92450163 TAAAATCAAAGATA
1 TAAAATCAAAGATA
92450177 T
1 T
92450178 TGTAACTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (14 bp):
TAAAATCAAAGATA
Found at i:92450638 original size:29 final size:29
Alignment explanation
Indices: 92450593--92450651 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
92450583 AGAAAGATGA
92450593 ATAAATAATTTTCTCTCTCCTTTCACCAT
1 ATAAATAATTTTCTCTCTCCTTTCACCAT
*
92450622 ATAAATAATTTTTTCTCTCCTTTCACCAT
1 ATAAATAATTTTCTCTCTCCTTTCACCAT
92450651 A
1 A
92450652 AATATTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (29 bp):
ATAAATAATTTTCTCTCTCCTTTCACCAT
Found at i:92450652 original size:27 final size:28
Alignment explanation
Indices: 92450592--92450664 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 28
92450582 GAGAAAGATG
*
92450592 AATAAATAATTTTCTCTCTCCTTTCACC
1 AATAAATAATTTTTTCTCTCCTTTCACC
92450620 ATATAAATAATTTTTTCTCTCCTTTCACC
1 A-ATAAATAATTTTTTCTCTCCTTTCACC
92450649 -ATAAAT-ATTTGTTTCT
1 AATAAATAATTT-TTTCT
92450665 TTTAATTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 4 0.10
27 11 0.26
28 1 0.02
29 26 0.62
ACGTcount: A:0.29, C:0.22, G:0.01, T:0.48
Consensus pattern (28 bp):
AATAAATAATTTTTTCTCTCCTTTCACC
Found at i:92454401 original size:13 final size:13
Alignment explanation
Indices: 92454383--92454407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92454373 TAATACATAC
92454383 ATCACATAATCAG
1 ATCACATAATCAG
92454396 ATCACATAATCA
1 ATCACATAATCA
92454408 AGGGTCTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
ATCACATAATCAG
Found at i:92454957 original size:12 final size:12
Alignment explanation
Indices: 92454940--92454973 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
92454930 TGGCTGTGTA
92454940 CTACCACACGGC
1 CTACCACACGGC
*
92454952 CTACCACACGGG
1 CTACCACACGGC
*
92454964 CGACCACACG
1 CTACCACACG
92454974 CCCGTGTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:92461530 original size:21 final size:21
Alignment explanation
Indices: 92461506--92461612 Score: 81
Period size: 21 Copynumber: 5.1 Consensus size: 21
92461496 TCTTTCAAGC
92461506 TTCTATTCAACTCTTATGAGT
1 TTCTATTCAACTCTTATGAGT
* *
92461527 TTCTGTT-AAGCTCTTATGAGC
1 TTCTATTCAA-CTCTTATGAGT
* * *
92461548 TTCTGTTTAACTCATATGAGT
1 TTCTATTCAACTCTTATGAGT
* * * * *
92461569 TTTTTTTCAGCTCTTACGAGC
1 TTCTATTCAACTCTTATGAGT
* * *
92461590 TTCTACTCAACCCTTATGGGT
1 TTCTATTCAACTCTTATGAGT
92461611 TT
1 TT
92461613 TTGTTTAGCT
Statistics
Matches: 65, Mismatches: 19, Indels: 4
0.74 0.22 0.05
Matches are distributed among these distances:
20 2 0.03
21 61 0.94
22 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.46
Consensus pattern (21 bp):
TTCTATTCAACTCTTATGAGT
Found at i:92461578 original size:84 final size:84
Alignment explanation
Indices: 92461461--92461635 Score: 260
Period size: 84 Copynumber: 2.1 Consensus size: 84
92461451 AGCATTTACA
* * *
92461461 AGCTTCTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTTCAAGCTTCTATTCAACTCTTATGAG
1 AGCTTCTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACAAGCTTCTACTCAACCCTTATGAG
*
92461526 TTTCTGTTAAGCTCTTATG
66 TTTCTGTTAAGCTCTCATG
** * *
92461545 AGCTTCTGTTTAACTCATATGAGTTTTTTTTCAGCTCTTACGAGCTTCTACTCAACCCTTATGGG
1 AGCTTCTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACAAGCTTCTACTCAACCCTTATGAG
* *
92461610 TTTTTGTTTAGCTCTCATG
66 TTTCTGTTAAGCTCTCATG
92461629 AGCTTCT
1 AGCTTCT
92461636 ATTAAGCTTT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (84 bp):
AGCTTCTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACAAGCTTCTACTCAACCCTTATGAG
TTTCTGTTAAGCTCTCATG
Found at i:92461613 original size:42 final size:42
Alignment explanation
Indices: 92461456--92461638 Score: 170
Period size: 42 Copynumber: 4.4 Consensus size: 42
92461446 CATTTAGCAT
* * * * **
92461456 TTACAAGCTTCTGTTTAACTCATATGAGTTTTCGTTCAGCTC
1 TTACGAGCTTCTATTCAACTCTTATGAGTTTTTTTTCAGCTC
* * * * *
92461498 TTTCAAGCTTCTATTCAACTCTTATGAGTTTCTGTTAAGCTC
1 TTACGAGCTTCTATTCAACTCTTATGAGTTTTTTTTCAGCTC
* * * *
92461540 TTATGAGCTTCTGTTTAACTCATATGAGTTTTTTTTCAGCTC
1 TTACGAGCTTCTATTCAACTCTTATGAGTTTTTTTTCAGCTC
* * *
92461582 TTACGAGCTTCTACTCAACCCTTATGGGTTTTTGTTT-AGCTC
1 TTACGAGCTTCTATTCAACTCTTATGAGTTTTT-TTTCAGCTC
* *
92461624 TCATGAGCTTCTATT
1 TTACGAGCTTCTATT
92461639 AAGCTTTTGA
Statistics
Matches: 114, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
42 111 0.97
43 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (42 bp):
TTACGAGCTTCTATTCAACTCTTATGAGTTTTTTTTCAGCTC
Found at i:92464525 original size:15 final size:16
Alignment explanation
Indices: 92464505--92464539 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
92464495 CTTATTTTCA
*
92464505 TTTCCATTTCAT-TAC
1 TTTCCATTGCATCTAC
92464520 TTTCCATTGCATCTAC
1 TTTCCATTGCATCTAC
92464536 TTTC
1 TTTC
92464540 TTTAACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.17, C:0.29, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTCCATTGCATCTAC
Found at i:92465024 original size:34 final size:34
Alignment explanation
Indices: 92464981--92465054 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
92464971 CTATTACTCA
92464981 TCTTAACTTACAAGGATATTCATATAGTTTCATG
1 TCTTAACTTACAAGGATATTCATATAGTTTCATG
92465015 TCTTAACTTACAAGGATATTCATATAGTTTCATG
1 TCTTAACTTACAAGGATATTCATATAGTTTCATG
92465049 TCTTAA
1 TCTTAA
92465055 TTCATATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (34 bp):
TCTTAACTTACAAGGATATTCATATAGTTTCATG
Found at i:92468311 original size:16 final size:16
Alignment explanation
Indices: 92468287--92468329 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
92468277 AAAGGAAAAT
92468287 AATTT-AAAAACTTAA
1 AATTTGAAAAACTTAA
*
92468302 ATTTTG-AAAACTTAA
1 AATTTGAAAAACTTAA
92468317 AATTTGAAGAAAC
1 AATTTGAA-AAAC
92468330 GATTTTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 18 0.78
16 1 0.04
17 4 0.17
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (16 bp):
AATTTGAAAAACTTAA
Found at i:92468313 original size:15 final size:15
Alignment explanation
Indices: 92468287--92468324 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
92468277 AAAGGAAAAT
*
92468287 AATTTAAAAACTTAA
1 AATTTGAAAACTTAA
*
92468302 ATTTTGAAAACTTAA
1 AATTTGAAAACTTAA
92468317 AATTTGAA
1 AATTTGAA
92468325 GAAACGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (15 bp):
AATTTGAAAACTTAA
Found at i:92469481 original size:24 final size:23
Alignment explanation
Indices: 92469454--92469499 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
92469444 TAACAATATG
*
92469454 CAGAAAATTCTGCTAGTAAAAATA
1 CAGAAAAGT-TGCTAGTAAAAATA
*
92469478 CAGACAAGTTGCTAGTAAAAAT
1 CAGAAAAGTTGCTAGTAAAAAT
92469500 GCGATAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.24
Consensus pattern (23 bp):
CAGAAAAGTTGCTAGTAAAAATA
Found at i:92471055 original size:12 final size:12
Alignment explanation
Indices: 92471038--92471064 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
92471028 GAAAGAGATG
92471038 GTAAAACTAGGT
1 GTAAAACTAGGT
92471050 GTAAAACTAGGT
1 GTAAAACTAGGT
92471062 GTA
1 GTA
92471065 GGAGAAGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (12 bp):
GTAAAACTAGGT
Found at i:92471638 original size:20 final size:20
Alignment explanation
Indices: 92471613--92471653 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
92471603 ATCCCTTACA
92471613 TCATTAAATAATTGAAACTT
1 TCATTAAATAATTGAAACTT
*
92471633 TCATTACATAATTGAAACTT
1 TCATTAAATAATTGAAACTT
92471653 T
1 T
92471654 TTAGAGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (20 bp):
TCATTAAATAATTGAAACTT
Found at i:92478551 original size:35 final size:35
Alignment explanation
Indices: 92478511--92478581 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
92478501 CTTGTTTATA
92478511 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
92478546 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
92478581 A
1 A
92478582 TTCACATAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.25
Consensus pattern (35 bp):
ACCTTACCACATCCTGGTCACTTAATGAACACATC
Found at i:92480666 original size:47 final size:46
Alignment explanation
Indices: 92480548--92480674 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
92480538 ATAATCTCAC
* * * **
92480548 CCATAATGAACTCGCAATGCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAATGAACTCGGAATACAACTCAACGAGTTCGAATGTTCGCAT
* * *
92480594 CCATAATGAACACGGAACACAACTCAACAAGTTCGAATGCTT-GCAT
1 CCATAATGAACTCGGAATACAACTCAACGAGTTCGAATG-TTCGCAT
*
92480640 CCATAGGTGAACTCGGAATACAACTCAACGAGTTC
1 CCATA-ATGAACTCGGAATACAACTCAACGAGTTC
92480675 AGATGCCTCA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
46 40 0.60
47 27 0.40
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAATGAACTCGGAATACAACTCAACGAGTTCGAATGTTCGCAT
Found at i:92484357 original size:40 final size:40
Alignment explanation
Indices: 92484249--92484458 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
92484239 CGGGATTTAA
* * * * *
92484249 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
92484289 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92484329 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92484369 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92484409 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92484449 CCGGATATAT
1 CCGGATATAT
92484459 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:92493279 original size:16 final size:16
Alignment explanation
Indices: 92493260--92493304 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
92493250 TTATTTTTCT
92493260 TATATATTCTTTTATA
1 TATATATTCTTTTATA
*
92493276 TATATATT-TTATTATG
1 TATATATTCTT-TTATA
92493292 TATATATTCTTTT
1 TATATATTCTTTT
92493305 TTACTAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (16 bp):
TATATATTCTTTTATA
Found at i:92497204 original size:19 final size:19
Alignment explanation
Indices: 92497175--92497221 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
92497165 AATGAGATTG
92497175 AATTGAGATAAAGTTTTCTA
1 AATT-AGATAAAGTTTTCTA
92497195 AATTAGATAAAGTTTTCTA
1 AATTAGATAAAGTTTTCTA
*
92497214 AATGAGAT
1 AATTAGAT
92497222 TGAATTGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (19 bp):
AATTAGATAAAGTTTTCTA
Found at i:92505721 original size:205 final size:206
Alignment explanation
Indices: 92505227--92505780 Score: 819
Period size: 205 Copynumber: 2.7 Consensus size: 206
92505217 CAGATCTGGC
* * *
92505227 TGAAGCAAGATCTAAGATGGTTTGGCATCCTTGTGCTTATAAGGAACAAATCGAAGACATAGCTG
1 TGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
92505292 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
92505357 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGACTTC
130 GAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGAACTTC
* *
92505422 AGATGTTTATAT
195 AGATGATTAGAT
* * *
92505434 TGAAGCAGACCCAAGATGATTT-GTCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 TGAAGCAGATCCAAGATGGTTTGGT-ATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
* * * *
92505497 GATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAACATGATTTGGCATCTCTGTATTGTTAG
64 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
92505562 AGAACAAATCGAAGTTTGGCATCTCCATA-TCGATGGAGGGTAGACACATAGCAGATCT-AACCT
129 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGAA-CT
92505625 TCAGATGATTAGAT
193 TCAGATGATTAGAT
* *
92505639 TGAAGCAGATCCAAGATGGTTTGGTATCATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
1 TGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGA
* * *
92505704 TTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGGG
66 TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
92505769 AACAAATCGAAG
131 AACAAATCGAAG
92505781 AAGCAGATTT
Statistics
Matches: 310, Mismatches: 32, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
204 1 0.00
205 166 0.54
206 137 0.44
207 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (206 bp):
TGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGA
TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGAACTTCA
GATGATTAGAT
Found at i:92507725 original size:14 final size:14
Alignment explanation
Indices: 92507674--92507725 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
92507664 TAATATTTAT
92507674 TTTTCTTATATATTC
1 TTTT-TTATATATTC
* *
92507689 TTTTATATATATTT
1 TTTTTTATATATTC
92507703 TATTATTTATATATTC
1 T-TT-TTTATATATTC
92507719 TTTTTTA
1 TTTTTTA
92507726 CTAATTATGC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 13 0.42
15 8 0.26
16 10 0.32
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTTTATATATTC
Found at i:92511148 original size:20 final size:20
Alignment explanation
Indices: 92511123--92511161 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
92511113 CCCTTACATA
92511123 ATTACATAATTGAAACTTTC
1 ATTACATAATTGAAACTTTC
92511143 ATTACATAATTGAAACTTT
1 ATTACATAATTGAAACTTT
92511162 TTAGAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
ATTACATAATTGAAACTTTC
Found at i:92512512 original size:40 final size:40
Alignment explanation
Indices: 92512467--92512549 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
92512457 CCGTATAGAT
92512467 AGAACAATACCTCAACATCAATAGTGCATTTCAAAACAAA
1 AGAACAATACCTCAACATCAATAGTGCATTTCAAAACAAA
92512507 AGAACAATACCTCAACATCAATAGTGCATTTCAAAACAAA
1 AGAACAATACCTCAACATCAATAGTGCATTTCAAAACAAA
92512547 AGA
1 AGA
92512550 GTAAAACCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.19
Consensus pattern (40 bp):
AGAACAATACCTCAACATCAATAGTGCATTTCAAAACAAA
Found at i:92515751 original size:31 final size:31
Alignment explanation
Indices: 92515702--92515773 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
92515692 GGGATTACAC
* *
92515702 GCCCATGTGGTCTGCCCGTGTAGGCCCACAT
1 GCCCGTGTGGTCTACCCGTGTAGGCCCACAT
* *
92515733 GCCCGTGTGGTTTACCCGTGTAGGCTCACAT
1 GCCCGTGTGGTCTACCCGTGTAGGCCCACAT
*
92515764 GCCTGTGTGG
1 GCCCGTGTGG
92515774 CCCACATGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.11, C:0.31, G:0.32, T:0.26
Consensus pattern (31 bp):
GCCCGTGTGGTCTACCCGTGTAGGCCCACAT
Found at i:92526692 original size:42 final size:42
Alignment explanation
Indices: 92526645--92526727 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
92526635 CTAAAATCAC
*
92526645 ATTTGACTCGTAAATTTTAAATAATAATATTTACGAACTTAT
1 ATTTGACTCGTAAATATTAAATAATAATATTTACGAACTTAT
* *
92526687 ATTTGATTGGTAAATATTAAATAATAATATTTACGAACTTA
1 ATTTGACTCGTAAATATTAAATAATAATATTTACGAACTTA
92526728 CTCGTTAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (42 bp):
ATTTGACTCGTAAATATTAAATAATAATATTTACGAACTTAT
Found at i:92532033 original size:23 final size:23
Alignment explanation
Indices: 92532003--92532046 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
92531993 GCAAGAATAT
92532003 CCATTTTTAAAGCTTCAAACAAG
1 CCATTTTTAAAGCTTCAAACAAG
92532026 CCATTTTTAAAGCTTCAAACA
1 CCATTTTTAAAGCTTCAAACA
92532047 TTCAGTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.32
Consensus pattern (23 bp):
CCATTTTTAAAGCTTCAAACAAG
Found at i:92532299 original size:40 final size:39
Alignment explanation
Indices: 92532255--92532394 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 39
92532245 TGATGACAAA
* *
92532255 TCGGCTATGTATGGCACTTAATGTGCGATTCGAGATAGTT
1 TCGGCTATGTATGGCACTTAATGTGTGATTCG-GATAGCT
92532295 TCGGCTATGTATGGCACTTAATGTGTGATTCGTGATAGCT
1 TCGGCTATGTATGGCACTTAATGTGTGATTCG-GATAGCT
* * *
92532335 TCGGCTATGTATGGCACTTAGTGTATGATTTGGAATAGCT
1 TCGGCTATGTATGGCACTTAATGTGTGATTCGG-ATAGCT
*
92532375 TCAGCTATGTATGGCACTTA
1 TCGGCTATGTATGGCACTTA
92532395 GTGTACGAGA
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.99
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.36
Consensus pattern (39 bp):
TCGGCTATGTATGGCACTTAATGTGTGATTCGGATAGCT
Found at i:92536303 original size:58 final size:58
Alignment explanation
Indices: 92536238--92536350 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
92536228 GGTTTACCGA
* *
92536238 AAAGAGAAAGATATCAAAGAAATGAATGGAAAAGAAATTTGACATAAGAATTTTGTAC
1 AAAGAGAAAGATATCAAAGAAAAGAATGGAAAAGAAATATGACATAAGAATTTTGTAC
* *
92536296 AAAGAGAAAGATGTCAAAGAAAAGAATGGAAAAGAAATATGACGTAAGAATTTTG
1 AAAGAGAAAGATATCAAAGAAAAGAATGGAAAAGAAATATGACATAAGAATTTTG
92536351 GGGATTTTGG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.20
Consensus pattern (58 bp):
AAAGAGAAAGATATCAAAGAAAAGAATGGAAAAGAAATATGACATAAGAATTTTGTAC
Found at i:92536404 original size:15 final size:15
Alignment explanation
Indices: 92536375--92536407 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
92536365 TGAGAGAAAG
92536375 AAAGAAAATATAAAT
1 AAAGAAAATATAAAT
92536390 AAAGTAAAATA-AAAT
1 AAAG-AAAATATAAAT
92536405 AAA
1 AAA
92536408 AGATTTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (15 bp):
AAAGAAAATATAAAT
Found at i:92536923 original size:18 final size:18
Alignment explanation
Indices: 92536885--92536924 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
92536875 TGACCCCTGG
*
92536885 TTTCCCAAAATTTCATGT
1 TTTCCCAAAATTTCATAT
92536903 TTTCCCAAAATTTTC-TAT
1 TTTCCCAAAA-TTTCATAT
92536921 TTTC
1 TTTC
92536925 TTTCAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.25, C:0.23, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTCCCAAAATTTCATAT
Found at i:92538548 original size:20 final size:20
Alignment explanation
Indices: 92538525--92538578 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
92538515 TCACACTCCG
92538525 GTACCCCTGATTGCACTTTT
1 GTACCCCTGATTGCACTTTT
** * *
92538545 GTACCTGTGATTTCTCTTTT
1 GTACCCCTGATTGCACTTTT
* *
92538565 GTGCCCTTGATTGC
1 GTACCCCTGATTGC
92538579 TGATCACAGT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.44
Consensus pattern (20 bp):
GTACCCCTGATTGCACTTTT
Found at i:92542292 original size:29 final size:28
Alignment explanation
Indices: 92542258--92542360 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
92542248 TACTCAATCA
*
92542258 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
92542287 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
92542316 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
92542345 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
92542361 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:92546061 original size:42 final size:42
Alignment explanation
Indices: 92546015--92546128 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
92546005 GGATTTGACG
* *
92546015 TCGATGTCATATCCCAGATATCGTCTTATACGAAATCTCATT-
1 TCGATGTCATATCCCAGATATGGTCTTACACGAAATCTC-TTA
* * **
92546057 TCGATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCTTA
1 TCGATGTCATATCCCAGATATGGTCTTACACGAAATCTCTTA
* * *
92546099 TCAACGTCATATCCTAGATATGGTCTTACA
1 TCGATGTCATATCCCAGATATGGTCTTACA
92546129 TGATAACATA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.03
42 56 0.97
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGTCATATCCCAGATATGGTCTTACACGAAATCTCTTA
Found at i:92551567 original size:13 final size:13
Alignment explanation
Indices: 92551549--92551573 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92551539 AAAAACAGTG
92551549 TCCTCTAATCATC
1 TCCTCTAATCATC
92551562 TCCTCTAATCAT
1 TCCTCTAATCAT
92551574 TAAGGGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (13 bp):
TCCTCTAATCATC
Found at i:92571321 original size:43 final size:43
Alignment explanation
Indices: 92571170--92571333 Score: 125
Period size: 43 Copynumber: 3.9 Consensus size: 43
92571160 GATTCTGAGA
* * * * *
92571170 TTGATATCATGTAAGACCATGTGTAGGACATTGACATCGATCT
1 TTGATAACATGTAAGACCATATGTGGGACATTGGCATCGATAT
** * * * *
92571213 GAGATTACGTGTAAGACCATGTGTGGGACATTGGCATAG-TAT
1 TTGATAACATGTAAGACCATATGTGGGACATTGGCATCGATAT
* **** * * *
92571255 ATGATTTTGTGTAAGACCCTATTTGGGACAGTGGCATCGATAT
1 TTGATAACATGTAAGACCATATGTGGGACATTGGCATCGATAT
* *
92571298 TTGATAACATGTAAGACCATATTTGGGATA-TGGCAT
1 TTGATAACATGTAAGACCATATGTGGGACATTGGCAT
92571334 TGTACGAGTT
Statistics
Matches: 95, Mismatches: 25, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
42 38 0.40
43 57 0.60
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (43 bp):
TTGATAACATGTAAGACCATATGTGGGACATTGGCATCGATAT
Found at i:92578518 original size:46 final size:46
Alignment explanation
Indices: 92578364--92578724 Score: 225
Period size: 46 Copynumber: 7.6 Consensus size: 46
92578354 TTTGTATGCT
* *
92578364 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * *
92578410 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATGAGAGCC
* *
92578458 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
* * * * *
92578504 AGTGTAAGACATGTCTGGGTCATGCATC-GACTATGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * *
92578548 AGCGTAAGACCATGTCTGGGACATGGCATCAG-CACGAAAATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGA--TGAGAGCC
* * * * ** * *
92578598 AATATAAGACCATTTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GAGAGCC
* * ** *
92578647 AATGTAAGACCATGTTTGGGACATGGCATC-TACT--TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GA-GAGCC
92578694 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
92578725 ACATTATACC
Statistics
Matches: 246, Mismatches: 53, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
44 10 0.04
45 17 0.07
46 67 0.27
47 62 0.25
48 27 0.11
49 31 0.13
50 29 0.12
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:92581830 original size:25 final size:25
Alignment explanation
Indices: 92581796--92581846 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
92581786 GTAACATTTT
*
92581796 GAAATTCAAAATTTCTCCTATGATA
1 GAAATTCAAAATTTCTCATATGATA
92581821 GAAATTCAAAATTTCTCATATGATA
1 GAAATTCAAAATTTCTCATATGATA
92581846 G
1 G
92581847 TCATGTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (25 bp):
GAAATTCAAAATTTCTCATATGATA
Found at i:92593347 original size:107 final size:108
Alignment explanation
Indices: 92593189--92593404 Score: 344
Period size: 107 Copynumber: 2.0 Consensus size: 108
92593179 AAGCATCCCT
* * *
92593189 ACCTAAACAAAATTAATGAAAAGAAAAGAAAATTCTACCCATTTTTTATAAAGTTGTAGTTAAGA
1 ACCTAAACAAAATTAATGAAAAGAAAAGAAAATTATACCCATCTTTAATAAAGTTGTAGTTAAGA
*
92593254 GTTGATATTTATCATAATACTTGTATATTATACAAAATTGTCA
66 ATTGATATTTATCATAATACTTGTATATTATACAAAATTGTCA
*
92593297 ACCTAAACAAATTTAATGAAAAG-AAAGAAAATTATACCCATCTTTAATAAAGTTGTAGTTAAGA
1 ACCTAAACAAAATTAATGAAAAGAAAAGAAAATTATACCCATCTTTAATAAAGTTGTAGTTAAGA
* * * *
92593361 ATTTATGTTTATCATAATACTTTTATATTATACAAAATTTTCA
66 ATTGATATTTATCATAATACTTGTATATTATACAAAATTGTCA
92593404 A
1 A
92593405 ATACCATAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
107 77 0.78
108 22 0.22
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (108 bp):
ACCTAAACAAAATTAATGAAAAGAAAAGAAAATTATACCCATCTTTAATAAAGTTGTAGTTAAGA
ATTGATATTTATCATAATACTTGTATATTATACAAAATTGTCA
Found at i:92597815 original size:22 final size:22
Alignment explanation
Indices: 92597790--92597865 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
92597780 AAGTGTATAT
92597790 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
92597812 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
92597836 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
92597859 ATGTGAT
1 ATGTGAT
92597866 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:92597822 original size:47 final size:47
Alignment explanation
Indices: 92597768--92597940 Score: 274
Period size: 47 Copynumber: 3.7 Consensus size: 47
92597758 ATGATGAAAT
*
92597768 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAATGGCCAATG
* * *
92597815 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAATGGCCAATG
* * *
92597862 TGATGGATGTGAAGGTGTATAAATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAATGGCCAATG
*
92597909 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATAAATGTGATAAG
92597941 TCCCGAAAGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAATGGCCAATG
Found at i:92597853 original size:25 final size:25
Alignment explanation
Indices: 92597782--92597854 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
92597772 GAATGTGAAA
92597782 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
92597807 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
92597829 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
92597854 G
1 G
92597855 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:92599791 original size:12 final size:12
Alignment explanation
Indices: 92599774--92599798 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92599764 GAATCATAAA
92599774 CCTTAGATTTAC
1 CCTTAGATTTAC
92599786 CCTTAGATTTAC
1 CCTTAGATTTAC
92599798 C
1 C
92599799 ATGAGGATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (12 bp):
CCTTAGATTTAC
Found at i:92602650 original size:14 final size:14
Alignment explanation
Indices: 92602631--92602658 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92602621 GTAACATAGT
92602631 AAGTTTAATTTTTA
1 AAGTTTAATTTTTA
92602645 AAGTTTAATTTTTA
1 AAGTTTAATTTTTA
92602659 TATTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
AAGTTTAATTTTTA
Found at i:92604405 original size:12 final size:12
Alignment explanation
Indices: 92604388--92604413 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92604378 AACACCGCCT
92604388 TGGACTTTCAAA
1 TGGACTTTCAAA
92604400 TGGACTTTCAAA
1 TGGACTTTCAAA
92604412 TG
1 TG
92604414 TTATAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (12 bp):
TGGACTTTCAAA
Found at i:92612835 original size:40 final size:40
Alignment explanation
Indices: 92612770--92612935 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
92612760 AAATTGAATG
* * *
92612770 ATATCC-GGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92612808 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
92612848 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92612888 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92612928 ATATCCGG
1 ATATCCGG
92612936 TTATATTCCG
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
38 6 0.06
39 9 0.09
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92620860 original size:40 final size:40
Alignment explanation
Indices: 92620794--92620960 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
92620784 AAATTGAATG
* * *
92620794 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92620833 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
92620873 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92620913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92620953 ATATCCGG
1 ATATCCGG
92620961 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92637436 original size:43 final size:43
Alignment explanation
Indices: 92637366--92637450 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
92637356 ATCGACATCG
* *
92637366 TATTTGATTTCGTGTAAGACCCTGTCTGGGATAG-TGGCATTGA
1 TATTTGATTACATGTAAGACCCTGTCTGGGAT-GTTGGCATTGA
*
92637409 TATTTGATTACATGTAATACCAC-GTCTGGGATGTTGGCATTG
1 TATTTGATTACATGTAAGACC-CTGTCTGGGATGTTGGCATTG
92637451 TACGAGCTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.95
44 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACCCTGTCTGGGATGTTGGCATTGA
Found at i:92642715 original size:18 final size:18
Alignment explanation
Indices: 92642665--92642716 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
92642655 AATATTTTTT
*
92642665 TAAAAAAATTATAAATATA
1 TAAAAATATTA-AAATATA
*
92642684 TAAAACATTATTAAAATTTA
1 TAAAA-A-TATTAAAATATA
92642704 TAAAAATATTAAA
1 TAAAAATATTAAA
92642717 TAAAATTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 7 0.24
19 6 0.21
20 12 0.41
21 4 0.14
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAAATATTAAAATATA
Found at i:92656350 original size:31 final size:31
Alignment explanation
Indices: 92656315--92656377 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
92656305 AGGAAGTATG
92656315 TCATGATTCCCAAGTCTGTCATATCAAACAC
1 TCATGATTCCCAAGTCTGTCATATCAAACAC
92656346 TCATGATTCCCAAGTCTGTCATATCAAACAC
1 TCATGATTCCCAAGTCTGTCATATCAAACAC
92656377 T
1 T
92656378 TCCTGCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.30
Consensus pattern (31 bp):
TCATGATTCCCAAGTCTGTCATATCAAACAC
Found at i:92660391 original size:25 final size:25
Alignment explanation
Indices: 92660330--92660391 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
92660320 TAGCTAGGGA
*
92660330 TGTAATTTTTAAAAATTTACCATGC
1 TGTAATTTTTATAAATTTACCATGC
92660355 TGTAATTTTTATAAATTTACCATGC
1 TGTAATTTTTATAAATTTACCATGC
92660380 TGTAATTTTTAT
1 TGTAATTTTTAT
92660392 TTTCTCTGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (25 bp):
TGTAATTTTTATAAATTTACCATGC
Found at i:92665771 original size:29 final size:29
Alignment explanation
Indices: 92665737--92665841 Score: 76
Period size: 29 Copynumber: 3.7 Consensus size: 29
92665727 ATATACATTA
92665737 AAACATAAGTGACTAAAATATAGCATTTC
1 AAACATAAGTGACTAAAATATAGCATTTC
* * * *
92665766 AAACATAAATCAGGCT--AACATAGCACGTT-
1 AAACATAAGT--GACTAAAATATAGCA-TTTC
* *
92665795 -AACAGTAAGTGGCTAAAATGTA-CATTTC
1 AAACA-TAAGTGACTAAAATATAGCATTTC
*
92665823 AAACATAAGTGATTAAAAT
1 AAACATAAGTGACTAAAAT
92665842 GTAATCTGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 17
0.68 0.12 0.20
Matches are distributed among these distances:
27 6 0.10
28 18 0.31
29 29 0.50
30 2 0.03
31 3 0.05
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.26
Consensus pattern (29 bp):
AAACATAAGTGACTAAAATATAGCATTTC
Found at i:92672614 original size:54 final size:54
Alignment explanation
Indices: 92672525--92672644 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
92672515 GAAGACTTTC
*
92672525 CAAGCACGATGACTCACTTTTTACTGAATTCAAGCCTCTATAGGTCTCACCTCTT
1 CAAGCAC-ATGACTCACATTTTACTGAATTCAAGCCTCTATAGGTCTCACCTCTT
* * * **
92672580 CAAGCACATAGA-TCACATTTTAGTGAAGTT-AAGCCTTTATAGGTTTTGCCTCTT
1 CAAGCACAT-GACTCACATTTTACTGAA-TTCAAGCCTCTATAGGTCTCACCTCTT
92672634 CAAGCACATGA
1 CAAGCACATGA
92672645 GCTTGGAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
53 2 0.04
54 44 0.77
55 11 0.19
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (54 bp):
CAAGCACATGACTCACATTTTACTGAATTCAAGCCTCTATAGGTCTCACCTCTT
Found at i:92672836 original size:24 final size:25
Alignment explanation
Indices: 92672809--92672856 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
92672799 TTATTTATTT
92672809 ATTATC-ATATAATATTTTA-ATAAA
1 ATTATCTAT-TAATATTTTAGATAAA
*
92672833 ATTATCTATTAATTTTTTAGATAA
1 ATTATCTATTAATATTTTAGATAA
92672857 TAATATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTATCTATTAATATTTTAGATAAA
Found at i:92672947 original size:2 final size:2
Alignment explanation
Indices: 92672940--92672976 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92672930 GTAAAAGTAA
92672940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92672977 GGAAAACTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92679308 original size:2 final size:2
Alignment explanation
Indices: 92679259--92679295 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92679249 AAAAACTCTA
92679259 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92679296 CACACAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92710364 original size:35 final size:35
Alignment explanation
Indices: 92710325--92710394 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
92710315 GTTTGGGATC
92710325 AAAGTTTAGAAATTTTATAGCCCAGAATGCTTTGT
1 AAAGTTTAGAAATTTTATAGCCCAGAATGCTTTGT
92710360 AAAGTTTAGAAATTTTATAGCCCAGAATGCTTTGT
1 AAAGTTTAGAAATTTTATAGCCCAGAATGCTTTGT
92710395 GTTCTAACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37
Consensus pattern (35 bp):
AAAGTTTAGAAATTTTATAGCCCAGAATGCTTTGT
Found at i:92713158 original size:29 final size:29
Alignment explanation
Indices: 92713124--92713255 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
92713114 TACTCGATTT
** * *
92713124 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
92713153 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
92713182 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
92713211 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
92713240 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
92713256 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:92724397 original size:40 final size:40
Alignment explanation
Indices: 92724269--92724399 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
92724259 TATGCTGGAA
* * * *
92724269 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
92724309 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
92724349 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
92724389 ATTATATCCGG
1 ATTATATCCGG
92724400 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:92729015 original size:12 final size:12
Alignment explanation
Indices: 92728995--92729030 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
92728985 TGGGATATGC
*
92728995 AATGTATGAATG
1 AATGCATGAATG
92729007 AATGCATGAATG
1 AATGCATGAATG
92729019 AATGCATGAATG
1 AATGCATGAATG
92729031 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:92733265 original size:11 final size:11
Alignment explanation
Indices: 92733249--92733278 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92733239 TAACATTAAG
92733249 AATATATATAT
1 AATATATATAT
*
92733260 AATATAAATAT
1 AATATATATAT
92733271 AATATATA
1 AATATATA
92733279 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:92733825 original size:17 final size:17
Alignment explanation
Indices: 92733805--92733843 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
92733795 AAAAAAATAA
*
92733805 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
92733822 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
92733839 AAAAT
1 AAAAT
92733844 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:92734722 original size:126 final size:126
Alignment explanation
Indices: 92734490--92734825 Score: 519
Period size: 126 Copynumber: 2.7 Consensus size: 126
92734480 TAGTCTAAGG
* *
92734490 TTTTTTCAGATACCACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTTCCGAAATTTTACTGA
1 TTTTATCAGATACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTACTGA
92734555 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTA
* * *
92734616 TTTTATCAGAGACCACTGTAGCAAAAGAGCGTTCACGTGGGAGGTTTTTTCCGAAATTTTACTGA
1 TTTTATCAGATACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTACTGA
* *
92734681 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTA
* * * * * ** *
92734742 TTTTATCAAATATCACTATAGCAAAAGAGTGTCCACGTGGAAGCTTTTTTTTTGAAATTTTGCTG
1 TTTTATCAGATACCACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTTCCGAAATTTTACTG
*
92734807 AAAGTGCATCATTCTTGAA
65 AAAGTGCATCCTTCTTGAA
92734826 TGTGTTTATT
Statistics
Matches: 190, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
126 155 0.82
127 35 0.18
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (126 bp):
TTTTATCAGATACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTACTGA
AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTA
Found at i:92734899 original size:16 final size:16
Alignment explanation
Indices: 92734868--92734911 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
92734858 TCTCCCTTAA
92734868 AAACCACTAAAAAACCCT
1 AAACCACT--AAAACCCT
92734886 AAACCACTAAAACCCT
1 AAACCACTAAAACCCT
92734902 -AACC-CTAAAA
1 AAACCACTAAAA
92734912 TAATCAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.23
15 4 0.15
16 8 0.31
18 8 0.31
ACGTcount: A:0.55, C:0.34, G:0.00, T:0.11
Consensus pattern (16 bp):
AAACCACTAAAACCCT
Found at i:92734934 original size:24 final size:24
Alignment explanation
Indices: 92734894--92734944 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
92734884 CTAAACCACT
92734894 AAAACCCTAACCCTAAAATAA-TCA
1 AAAACCCTAACCCTAAAA-AACTCA
**
92734918 AAAACCCTAACTTTAAAAAACTCA
1 AAAACCCTAACCCTAAAAAACTCA
92734942 AAA
1 AAA
92734945 TCCTAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.57, C:0.25, G:0.00, T:0.18
Consensus pattern (24 bp):
AAAACCCTAACCCTAAAAAACTCA
Found at i:92735084 original size:161 final size:161
Alignment explanation
Indices: 92734840--92735224 Score: 569
Period size: 161 Copynumber: 2.4 Consensus size: 161
92734830 TTTATTAATT
* * *
92734840 TCTAAGCGTTTATTAATTTCTCCCTTAAAAACCACTAAAAAACCCTAAACCACTAAAACCCTAAC
1 TCTAAGTGTTCATTAATTTCTCCCTTAAAAAACACT-AAAAACCCTAAACCACTAAAACCCTAAC
* * * *
92734905 CCTAAAATAATCAAAAACCCTAACTTTAAAAAACTCAAAATCCTAATTTAATTGA-TTTTTTTAT
65 CCTAAAACAATAAAAAACCCTAACCTT-AAAAACTCAAAACCCTAATTTAATTGATTTTTTTTAT
*
92734969 TCTCATAGTTAATTTAATTAATTAACCCTCAAC
129 TCTCATAGTTAATTTAACTAATTAACCCTCAAC
*
92735002 TCTAAGTGTTCATTAATTTCTCCCTTAAAAATCACTAAAAACCCTAAACCACTAAAACCGC-AAC
1 TCTAAGTGTTCATTAATTTCTCCCTTAAAAAACACTAAAAACCCTAAACCACTAAAACC-CTAAC
* **
92735066 TCTAAAACAATAAAAAACCCTAACCTTAAAAACTTGAAACCCTAATTTAATTGATTTTTTTTATT
65 CCTAAAACAATAAAAAACCCTAACCTTAAAAACTCAAAACCCTAATTTAATTGATTTTTTTTATT
92735131 CTCATAGTTAATTTAACTAATTAACCCTCAAC
130 CTCATAGTTAATTTAACTAATTAACCCTCAAC
* * * * *
92735163 TTTAAGTGTACATTAATTTTTTCCTTAAAAAACCCT-AAAACCCTAAACCACTAAAACCCTAA
1 TCTAAGTGTTCATTAATTTCTCCCTTAAAAAACACTAAAAACCCTAAACCACTAAAACCCTAA
92735225 ACAACTTAAA
Statistics
Matches: 203, Mismatches: 17, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
159 1 0.00
160 48 0.24
161 120 0.59
162 34 0.17
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.32
Consensus pattern (161 bp):
TCTAAGTGTTCATTAATTTCTCCCTTAAAAAACACTAAAAACCCTAAACCACTAAAACCCTAACC
CTAAAACAATAAAAAACCCTAACCTTAAAAACTCAAAACCCTAATTTAATTGATTTTTTTTATTC
TCATAGTTAATTTAACTAATTAACCCTCAAC
Found at i:92735204 original size:8 final size:8
Alignment explanation
Indices: 92735191--92735260 Score: 63
Period size: 8 Copynumber: 8.4 Consensus size: 8
92735181 TTTTCCTTAA
92735191 AAAACCCT
1 AAAACCCT
92735199 AAAACCCT
1 AAAACCCT
92735207 -AAACCACT
1 AAAACC-CT
92735215 AAAACCCT
1 AAAACCCT
*
92735223 -AAACAACT
1 AAAAC-CCT
*
92735231 TAAACCCT
1 AAAACCCT
92735239 AAAACCCACT
1 AAAA-CC-CT
92735249 AAAAACCCT
1 -AAAACCCT
92735258 AAA
1 AAA
92735261 CTTAAAAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
7 9 0.17
8 22 0.42
9 13 0.25
10 4 0.08
11 4 0.08
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAACCCT
Found at i:92735218 original size:16 final size:16
Alignment explanation
Indices: 92735192--92735261 Score: 88
Period size: 16 Copynumber: 4.2 Consensus size: 16
92735182 TTTCCTTAAA
92735192 AAACC-CTAAAACCCT
1 AAACCACTAAAACCCT
92735207 AAACCACTAAAACCCT
1 AAACCACTAAAACCCT
* *
92735223 AAACAACTTAAACCCT
1 AAACCACTAAAACCCT
92735239 AAAACCCACTAAAAACCCT
1 -AAA-CCACT-AAAACCCT
92735258 AAAC
1 AAAC
92735262 TTAAAAAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
15 5 0.11
16 24 0.51
17 4 0.09
18 7 0.15
19 7 0.15
ACGTcount: A:0.51, C:0.36, G:0.00, T:0.13
Consensus pattern (16 bp):
AAACCACTAAAACCCT
Found at i:92735222 original size:24 final size:23
Alignment explanation
Indices: 92735191--92735261 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 23
92735181 TTTTCCTTAA
92735191 AAAACCCTAAAACCCTAAACCACT
1 AAAACCCTAAAACCCTAAACC-CT
* *
92735215 AAAACCCTAAACAACTTAAACCCT
1 AAAACCCTAAA-ACCCTAAACCCT
92735239 AAAACCCACTAAAAACCCTAAAC
1 AAAA-CC-CT-AAAACCCTAAAC
92735262 TTAAAAAACC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 17 0.44
25 10 0.26
26 9 0.23
27 3 0.08
ACGTcount: A:0.52, C:0.35, G:0.00, T:0.13
Consensus pattern (23 bp):
AAAACCCTAAAACCCTAAACCCT
Found at i:92735270 original size:16 final size:17
Alignment explanation
Indices: 92735249--92735286 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
92735239 AAAACCCACT
92735249 AAAAACCCTAAA-CTTA
1 AAAAACCCTAAACCTTA
*
92735265 AAAAACCTTAAACCTTA
1 AAAAACCCTAAACCTTA
92735282 AAAAA
1 AAAAA
92735287 AAGTTGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAACCCTAAACCTTA
Found at i:92740054 original size:28 final size:28
Alignment explanation
Indices: 92740014--92740092 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
92740004 GCAATCAAAT
* * *
92740014 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
92740042 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
92740070 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
92740093 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:92741684 original size:13 final size:13
Alignment explanation
Indices: 92741666--92741696 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
92741656 ACCCTGTTCT
92741666 GGCGAGGGATACG
1 GGCGAGGGATACG
92741679 GGCGAGGGATACG
1 GGCGAGGGATACG
92741692 GGCGA
1 GGCGA
92741697 AGTGTGTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.16, G:0.55, T:0.06
Consensus pattern (13 bp):
GGCGAGGGATACG
Found at i:92743211 original size:18 final size:18
Alignment explanation
Indices: 92743190--92743230 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
92743180 AAAGTGGAAG
92743190 TTGATTAAGATAAGAATT
1 TTGATTAAGATAAGAATT
92743208 TTGATTAAGATAAGAATT
1 TTGATTAAGATAAGAATT
92743226 TTGAT
1 TTGAT
92743231 GCTTTAGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (18 bp):
TTGATTAAGATAAGAATT
Found at i:92745190 original size:39 final size:39
Alignment explanation
Indices: 92745059--92745249 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
92745049 GGATATAACG
* ** **
92745059 ACTCGCTCAATTGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCACAA-TGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
92745099 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
92745139 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
92745177 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
92745217 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
92745250 CATCATTCGA
Statistics
Matches: 124, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 67 0.54
41 12 0.10
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:92745192 original size:78 final size:80
Alignment explanation
Indices: 92745099--92745249 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
92745089 GGTTATAGCG
* * * *
92745099 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
92745161 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
92745177 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
92745242 AGCCCGGA
66 AGCCCGGA
92745250 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:92754548 original size:20 final size:22
Alignment explanation
Indices: 92754523--92754564 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
92754513 TTACGAGTCT
92754523 TTATCTCTTGTA-GTTT-GCAA
1 TTATCTCTTGTATGTTTAGCAA
*
92754543 TTATCTGTTGTATGTTTAGCAA
1 TTATCTCTTGTATGTTTAGCAA
92754565 GTTTAGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (22 bp):
TTATCTCTTGTATGTTTAGCAA
Found at i:92755510 original size:30 final size:30
Alignment explanation
Indices: 92755474--92755631 Score: 237
Period size: 30 Copynumber: 5.3 Consensus size: 30
92755464 TGTTTTAGTT
* * *
92755474 GGTCTCCCAGAAACCGGAGAAGCAGAAGCA
1 GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
* *
92755504 GGTCTCCCAGAAATCGTAGAAGTAGGAGCA
1 GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
*
92755534 GGTCTCCTAGAAATC-ATAGAAGCAGGAGCA
1 GGTCTCCCAGAAATCGA-AGAAGCAGGAGCA
*
92755564 GGTCTCCCAGAAACCGAAGAAGCAGGAGCA
1 GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
92755594 GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
1 GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
92755624 GGTCTCCC
1 GGTCTCCC
92755632 TATTTGCGTC
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 115 0.99
31 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.29, T:0.12
Consensus pattern (30 bp):
GGTCTCCCAGAAATCGAAGAAGCAGGAGCA
Found at i:92761037 original size:7 final size:7
Alignment explanation
Indices: 92761025--92761052 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
92761015 TTCAGCCATA
92761025 AGTGCTC
1 AGTGCTC
92761032 AGTGCTC
1 AGTGCTC
92761039 AGTGCTC
1 AGTGCTC
92761046 AGTGCTC
1 AGTGCTC
92761053 GCCTGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (7 bp):
AGTGCTC
Found at i:92773523 original size:13 final size:13
Alignment explanation
Indices: 92773505--92773529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92773495 ATAAGTTGGT
92773505 AAGAAAATTTGTG
1 AAGAAAATTTGTG
92773518 AAGAAAATTTGT
1 AAGAAAATTTGT
92773530 TTTTCTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (13 bp):
AAGAAAATTTGTG
Found at i:92776895 original size:13 final size:13
Alignment explanation
Indices: 92776877--92776902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92776867 AACTTTTGAA
92776877 CACAAACAAAATT
1 CACAAACAAAATT
92776890 CACAAACAAAATT
1 CACAAACAAAATT
92776903 AACATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
CACAAACAAAATT
Found at i:92783576 original size:26 final size:26
Alignment explanation
Indices: 92783540--92783593 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
92783530 GTCATTTAAG
92783540 TTCATTAGTTTTTATTCCATAACTAT
1 TTCATTAGTTTTTATTCCATAACTAT
92783566 TTCATTAGTTTTTATTCCATAACTAT
1 TTCATTAGTTTTTATTCCATAACTAT
92783592 TT
1 TT
92783594 AACTCATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.04, T:0.56
Consensus pattern (26 bp):
TTCATTAGTTTTTATTCCATAACTAT
Found at i:92783904 original size:28 final size:29
Alignment explanation
Indices: 92783873--92783933 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
92783863 TAATATTTTA
*
92783873 TTAAATTAA-TTTAT-AAATTAACATAATT
1 TTAAA-TAATTTTATAAAATTAAAATAATT
*
92783901 TT-AATAATTTTGTAAAATTAAAATAATT
1 TTAAATAATTTTATAAAATTAAAATAATT
92783929 TTAAA
1 TTAAA
92783934 AACTTCTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.11
27 6 0.21
28 17 0.61
29 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (29 bp):
TTAAATAATTTTATAAAATTAAAATAATT
Found at i:92784845 original size:25 final size:23
Alignment explanation
Indices: 92784816--92784880 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
92784806 AATAAAAAAC
*
92784816 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
92784841 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
92784862 -TTAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
92784881 AAAAAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 11 0.29
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:92784875 original size:19 final size:20
Alignment explanation
Indices: 92784842--92784880 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
92784832 TCAAATACAT
92784842 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
92784862 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
92784881 AAAAAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:92784886 original size:19 final size:20
Alignment explanation
Indices: 92784844--92784886 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
92784834 AAATACATTT
**
92784844 AAAACATAAAAACAAATATT
1 AAAACATAAAAACAAATAAA
92784864 AAAACA-AAAAACAAATAAA
1 AAAACATAAAAACAAATAAA
92784883 AAAA
1 AAAA
92784887 TAAGACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (20 bp):
AAAACATAAAAACAAATAAA
Found at i:92790809 original size:19 final size:20
Alignment explanation
Indices: 92790771--92790810 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
92790761 AATACTTGTT
* *
92790771 TATTATTTTATTCATGTGTA
1 TATTATTTTATACATATGTA
92790791 TATTA-TTTATACATATGTA
1 TATTATTTTATACATATGTA
92790810 T
1 T
92790811 TCATTTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (20 bp):
TATTATTTTATACATATGTA
Found at i:92792859 original size:17 final size:17
Alignment explanation
Indices: 92792837--92792870 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92792827 TTATAAAAAT
92792837 ATAATGACCAAATTATG
1 ATAATGACCAAATTATG
*
92792854 ATAATGACTAAATTATG
1 ATAATGACCAAATTATG
92792871 TTAAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (17 bp):
ATAATGACCAAATTATG
Found at i:92804952 original size:8 final size:8
Alignment explanation
Indices: 92804939--92804964 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
92804929 TCCCATAATC
92804939 TATAAAAT
1 TATAAAAT
92804947 TATAAAAT
1 TATAAAAT
92804955 TATAAAAT
1 TATAAAAT
92804963 TA
1 TA
92804965 CATTTTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TATAAAAT
Found at i:92813180 original size:8 final size:9
Alignment explanation
Indices: 92813163--92813204 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
92813153 ACATGAGGCA
92813163 AAAAATAAT
1 AAAAATAAT
92813172 AAAAA-AAT
1 AAAAATAAT
92813180 AAAAATTAAT
1 AAAAA-TAAT
* *
92813190 AAAATTTAT
1 AAAAATAAT
92813199 AAAAAT
1 AAAAAT
92813205 TATTAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 8 0.29
9 13 0.46
10 7 0.25
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATAAT
Found at i:92813200 original size:19 final size:19
Alignment explanation
Indices: 92813178--92813238 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
92813168 TAATAAAAAA
92813178 ATAAAAATTAATAAAATTT
1 ATAAAAATTAATAAAATTT
* *
92813197 ATAAAAATTATTAAATTTT
1 ATAAAAATTAATAAAATTT
*
92813216 AATAAAAATATAAGAAATATTT
1 -ATAAAAAT-TAATAAA-ATTT
92813238 A
1 A
92813239 ATTTTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 17 0.50
20 8 0.24
21 6 0.18
22 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
ATAAAAATTAATAAAATTT
Found at i:92813245 original size:29 final size:29
Alignment explanation
Indices: 92813185--92813243 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
92813175 AAAATAAAAA
*
92813185 TTAATAAAATTTATAAAAATTATTAAATT
1 TTAATAAAATATATAAAAATTATTAAATT
*
92813214 TTAATAAAA-ATATAAGAAA-TATTTAATT
1 TTAATAAAATATATAA-AAATTATTAAATT
92813242 TT
1 TT
92813244 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TTAATAAAATATATAAAAATTATTAAATT
Found at i:92813648 original size:29 final size:28
Alignment explanation
Indices: 92813616--92813714 Score: 82
Period size: 29 Copynumber: 3.6 Consensus size: 28
92813606 CCATTTATAT
*
92813616 ATATATTTTTTAATTTTAGTAAATTTTA
1 ATATATTTTATAATTTTAGTAAATTTTA
* *
92813644 A-ATATTTCTATATTTATTATTAAATTTTA
1 ATATATTT-TATAATT-TTAGTAAATTTTA
**
92813673 ATA-ATTTTATAACTTTTA-TTTATTTT-
1 ATATATTTTATAA-TTTTAGTAAATTTTA
*
92813699 -TATTTTTTATAATTTT
1 ATATATTTTATAATTTT
92813715 TTGTCACATG
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
25 6 0.10
26 8 0.14
27 12 0.20
28 13 0.22
29 19 0.32
30 1 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (28 bp):
ATATATTTTATAATTTTAGTAAATTTTA
Found at i:92813656 original size:39 final size:38
Alignment explanation
Indices: 92813608--92813681 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
92813598 ATTTTTTACC
* * *
92813608 ATTTATATATATATTTTTTAATTTTAGTAAATTTTAAAT
1 ATTTATATATATATTATTAAATTTTAAT-AATTTTAAAT
* *
92813647 ATTTCTATATTTATTATTAAATTTTAATAATTTTA
1 ATTTATATATATATTATTAAATTTTAATAATTTTA
92813682 TAACTTTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 7 0.23
39 23 0.77
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (38 bp):
ATTTATATATATATTATTAAATTTTAATAATTTTAAAT
Found at i:92813715 original size:9 final size:9
Alignment explanation
Indices: 92813552--92813715 Score: 63
Period size: 9 Copynumber: 17.4 Consensus size: 9
92813542 TTTTGATGCA
92813552 TTTTATAATTT
1 TTTTATAA--T
*
92813563 TTTTATGAT
1 TTTTATAAT
*
92813572 TTTTATAAAA
1 TTTTAT-AAT
*
92813582 TTTTATATTT
1 TTTTATA-AT
*
92813592 TTTTATATT
1 TTTTATAAT
**
92813601 TTTTACCAT
1 TTTTATAAT
92813610 TTATATATATAT
1 TT-T-TATA-AT
92813622 TTTT-TAA-
1 TTTTATAAT
*
92813629 TTTTAGTAAA
1 TTTTA-TAAT
92813639 TTTTA-AAT
1 TTTTATAAT
92813647 ATTTCTAT-AT
1 -TTT-TATAAT
92813657 TTATTATTAAAT
1 TT-TTA-T-AAT
*
92813669 TTTAATAA-
1 TTTTATAAT
*
92813677 TTTTATAAC
1 TTTTATAAT
*
92813686 TTTTATTTAT
1 TTTTA-TAAT
92813696 TTTTAT--T
1 TTTTATAAT
92813703 TTTTATAAT
1 TTTTATAAT
92813712 TTTT
1 TTTT
92813716 TGTCACATGT
Statistics
Matches: 119, Mismatches: 15, Indels: 40
0.68 0.09 0.23
Matches are distributed among these distances:
7 11 0.09
8 10 0.08
9 43 0.36
10 35 0.29
11 12 0.10
12 8 0.07
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:92814103 original size:27 final size:29
Alignment explanation
Indices: 92814061--92814139 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
92814051 ATTTGAAATT
*
92814061 TAATACTTTTTCTAATGTAATT-TGGT-CTC
1 TAATA-TTTTTATAATGTAATTAT-GTACTC
* * *
92814090 T-ATATTTTTATAATGTTATTATTTACTT
1 TAATATTTTTATAATGTAATTATGTACTC
92814118 TAATATTTTTATAATGTAATTA
1 TAATATTTTTATAATGTAATTA
92814140 ATTAATTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
27 15 0.36
28 7 0.17
29 20 0.48
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (29 bp):
TAATATTTTTATAATGTAATTATGTACTC
Found at i:92814939 original size:44 final size:44
Alignment explanation
Indices: 92814876--92814966 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
92814866 ATAGGTCAAA
*
92814876 TAATATTAAAATAACCTACATTAATCAA-AGTTTAAGTG-GAAAAC
1 TAATATTAAAATAACCTACACTAAT-AAGAGTTTAAGTGAG-AAAC
*
92814920 TAATATTAATATAACCTACACTAATAAGAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATAAGAGTTTAAGTGAGAAAC
92814964 TAA
1 TAA
92814967 AAACAAAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 2 0.05
44 40 0.93
45 1 0.02
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATAAGAGTTTAAGTGAGAAAC
Found at i:92816845 original size:13 final size:13
Alignment explanation
Indices: 92816827--92816851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92816817 ATGGTCTATT
92816827 TATAGGTTAAATC
1 TATAGGTTAAATC
92816840 TATAGGTTAAAT
1 TATAGGTTAAAT
92816852 AAGATTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
TATAGGTTAAATC
Found at i:92816938 original size:44 final size:44
Alignment explanation
Indices: 92816855--92816940 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
92816845 GTTAAATAAG
* * *
92816855 ATTAAAATAACCTACACTAATTAGATTTGAAATGGGAAACTACT
1 ATTAAAATAACCTACACTAATCAAATTTGAAATGAGAAACTACT
* *
92816899 ATTAAAATAGCCTACACTAATCAAAGTTT-AAGTGAGAAACTA
1 ATTAAAATAACCTACACTAATCAAA-TTTGAAATGAGAAACTA
92816941 AAAACAGAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 33 0.92
45 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.28
Consensus pattern (44 bp):
ATTAAAATAACCTACACTAATCAAATTTGAAATGAGAAACTACT
Found at i:92819262 original size:31 final size:31
Alignment explanation
Indices: 92819220--92819299 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
92819210 CAACCCTTTC
* *
92819220 AAAATGGTCAAATAAGGGCCA-AACATTTTTG
1 AAAATGCTCAAATAAGGGACATAAC-TTTTTG
*
92819251 AAAATGCTCAAATAAGGGACATATCTTTTTG
1 AAAATGCTCAAATAAGGGACATAACTTTTTG
* *
92819282 AAAATGCTCGAACAAGGG
1 AAAATGCTCAAATAAGGG
92819300 TTTCTCAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAATGCTCAAATAAGGGACATAACTTTTTG
Found at i:92819716 original size:18 final size:17
Alignment explanation
Indices: 92819689--92819725 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
92819679 TAAAAATAGG
*
92819689 AAATTATAAATTTATAA
1 AAATTATAAATGTATAA
92819706 AAATCTATAAATGTATAA
1 AAAT-TATAAATGTATAA
92819724 AA
1 AA
92819726 TTGCTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (17 bp):
AAATTATAAATGTATAA
Found at i:92822411 original size:20 final size:20
Alignment explanation
Indices: 92822388--92822427 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
92822378 TACCATTATA
92822388 CCCCTAGGGTTACTTTTGAC
1 CCCCTAGGGTTACTTTTGAC
92822408 CCCCTAGGGTTACTTTTGAC
1 CCCCTAGGGTTACTTTTGAC
92822428 TGAAAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.20, T:0.35
Consensus pattern (20 bp):
CCCCTAGGGTTACTTTTGAC
Found at i:92822559 original size:27 final size:26
Alignment explanation
Indices: 92822519--92822623 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 26
92822509 AGGAAGCGTC
*
92822519 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTTTGCCACAA-TATCTGAT
*
92822546 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTTTGCCACA-ATATCTGAT
* *
92822573 CTGGTGGCTCTGCTACAATATCTGAAT
1 CTGGTGGCTTTGCCACAATATCTG-AT
* * *
92822600 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTTGCCACAATATCTG
92822624 GCAGTCTCGC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 58 0.88
28 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTTTGCCACAATATCTGAT
Found at i:92822602 original size:54 final size:53
Alignment explanation
Indices: 92822519--92822623 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
92822509 AGGAAGCGTC
* *
92822519 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTTCGCCACA-ATATCTGTT
* * *
92822573 CTGGTGGCTCTGCTACAA-TATCTGAATCTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTTCGCCACAATATCTG
92822624 GCAGTCTCGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTTCGCCACAATATCTGTT
Found at i:92824036 original size:57 final size:58
Alignment explanation
Indices: 92823959--92824102 Score: 204
Period size: 57 Copynumber: 2.5 Consensus size: 58
92823949 TAAGATTATA
* * *
92823959 CCAATTATACATTATTCATTTCAATGG-CATAATCCATTAGCAGTCTATAAGGTGATT
1 CCAATTACACATAATTCATTTCAATGGACATAATCCATTAACAGTCTATAAGGTGATT
* * *
92824016 CCAATTACATATAATTCATTTTAA-GGACATAATCCATTAATAGTCTATAAGGTGATT
1 CCAATTACACATAATTCATTTCAATGGACATAATCCATTAACAGTCTATAAGGTGATT
*
92824073 CCAGTTACACATAATTCATTTCAAT-GACAT
1 CCAATTACACATAATTCATTTCAATGGACAT
92824103 TGTAATATCC
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
56 2 0.03
57 74 0.97
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (58 bp):
CCAATTACACATAATTCATTTCAATGGACATAATCCATTAACAGTCTATAAGGTGATT
Found at i:92825800 original size:49 final size:49
Alignment explanation
Indices: 92825620--92825813 Score: 210
Period size: 50 Copynumber: 3.9 Consensus size: 49
92825610 TCTATTGTGA
* * * **
92825620 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAATGTT
* * ** *
92825669 GTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTA-AATGGTGA
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAT-GT-T
* * *
92825721 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAATGTT
* *
92825770 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
92825814 TAGCTTGGGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 41 0.34
50 43 0.35
51 37 0.30
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAATGTT
Found at i:92827319 original size:29 final size:29
Alignment explanation
Indices: 92827285--92827387 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
92827275 CCACACGTGG
* *
92827285 TTGCTCGTCTGAGCTAAATTTACACCAGA
1 TTGCTCGTCTAAGCTAAAATTACACCAGA
* *
92827314 TTGCTCGTCCAAGTTAAAATTACACCAGA
1 TTGCTCGTCTAAGCTAAAATTACACCAGA
* *
92827343 TTGCTTGTCTGAG-TCAAAATTACACCATG-
1 TTGCTCGTCTAAGCT-AAAATTACACCA-GA
*
92827372 TTGCTCATCTAAGCTA
1 TTGCTCGTCTAAGCTA
92827388 TGTAATACTC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 1 0.02
29 58 0.95
30 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TTGCTCGTCTAAGCTAAAATTACACCAGA
Found at i:92832616 original size:22 final size:23
Alignment explanation
Indices: 92832589--92832646 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
92832579 TAAAAATGAT
*
92832589 AAAATTTTAATTTTATCAT-TTA
1 AAAATTTTAATTTTATCATGGTA
* * *
92832611 AAAATTATATTTTTATTATGGTA
1 AAAATTTTAATTTTATCATGGTA
*
92832634 AAAATTTAAATTT
1 AAAATTTTAATTT
92832647 AATTTCGGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 16 0.57
23 12 0.43
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (23 bp):
AAAATTTTAATTTTATCATGGTA
Found at i:92841763 original size:94 final size:94
Alignment explanation
Indices: 92841645--92842009 Score: 267
Period size: 94 Copynumber: 3.9 Consensus size: 94
92841635 GTTATGTGAG
* * * * *
92841645 AGCCAGTGTAAGACCATGTTTGGGATATGGCATCGACATTGAGATGAGG-GCTAGTGTAAGACGT
1 AGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACATAGAGAT-AGGTGCCAGTGTAAGACGT
92841709 GTCTGGGACATGCATCAGCCACATTACAAT
65 GTCTGGGACATGCATCAGCCACATTACAAT
* * *
92841739 AGCCAGTGGAAGGCCATGTCTGGGACATGGCATCGGCGTAGAGATAGGTGCCAGTGTAAGACGTG
1 AGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACATAGAGATAGGTGCCAGTGTAAGACGTG
* * * * * ***
92841804 TTTGGGATATGCATCGGCCTCAATGATGGT
66 TCTGGGACATGCATCAGCCAC-ATTACAAT
* * * * * * ** * * *
92841834 AACCAGTGTAAGA-CGTGTCTAGGACAT-GCATCGGC-TA-AGCTTCGTGCTAATGTAAGACATG
1 AGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACATAGAGATAGGTGCCAGTGTAAGACGTG
* * *
92841895 TCTGGGACATGCATCA-ACACTTATACACGAG
66 TCTGGGACATGCATCAGCCACAT-TACA--AT
* * * ** * *
92841926 AGCTAGTGTAAGACCATGTCTGGGATATGGCATCGAGGTAGAGAT-GAGTGCCGGTGTACGACGT
1 AGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACATAGAGATAG-GTGCCAGTGTAAGACGT
* * *
92841990 ATCTGGGATATTCATCAGCC
65 GTCTGGGACATGCATCAGCC
92842010 TCAATGATGG
Statistics
Matches: 204, Mismatches: 56, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 31 0.15
92 13 0.06
93 22 0.11
94 88 0.43
95 16 0.08
96 29 0.14
97 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
AGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACATAGAGATAGGTGCCAGTGTAAGACGTG
TCTGGGACATGCATCAGCCACATTACAAT
Found at i:92841810 original size:47 final size:46
Alignment explanation
Indices: 92841645--92842096 Score: 153
Period size: 47 Copynumber: 9.7 Consensus size: 46
92841635 GTTATGTGAG
* * * * *
92841645 AGCCAGTGTAAGACCATGTTTGGGATATGGCATCGACATTGAGATGAGG-
1 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAGAGAT-AGGT
* * * * * **
92841694 -GCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCACA-TTACAAT
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAGAGATA-GGT
* * *
92841739 AGCCAGTGGAAGGCCATGTCTGGGACATGGCATCGGCGTAGAGATAGGT
1 AGCCAGTGTAA-GACGTGTCTGGGACAT-GCATCGGC-TAGAGATAGGT
* *
92841788 -GCCAGTGTAAGACGTGTTTGGGATATGCATCGGCCTCA-ATGAT-GGT
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CT-AGA-GATAGGT
* * * **
92841834 AACCAGTGTAAGACGTGTCTAGGACATGCATCGGCTA-AGCTTCGT
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAGAGATAGGT
* * * ** * * *
92841879 -GCTAATGTAAGACATGTCTGGGACATGCATCAACACTTATACA-CGAG-
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATC--GGC-TAGAGATAG-GT
* * * *
92841926 AGCTAGTGTAAGACCATGTCTGGGATATGGCATCGAGGTAGAGAT-GAGT
1 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCG-GCTAGAGATAG-GT
* * * * * *
92841975 -GCCGGTGTACGACGTATCTGGGATATTCATCAGCCTCA-ATGAT-GGT
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATC-GGCT-AGA-GATAGGT
* * * * ***
92842021 AACCAGTGTAAGACGTGCCTGGGACATGCATTGGCTA-AGCTTCAT
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAGAGATAGGT
* *
92842066 -GCTAGTGTAAGACATGTCTGGGACATGCATC
1 AGCCAGTGTAAGACGTGTCTGGGACATGCATC
92842097 AGCACTTATA
Statistics
Matches: 299, Mismatches: 76, Indels: 61
0.69 0.17 0.14
Matches are distributed among these distances:
43 1 0.00
44 57 0.19
45 8 0.03
46 40 0.13
47 114 0.38
48 56 0.19
49 16 0.05
50 7 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAGAGATAGGT
Found at i:92841969 original size:187 final size:186
Alignment explanation
Indices: 92841694--92842149 Score: 632
Period size: 187 Copynumber: 2.4 Consensus size: 186
92841684 TGAGATGAGG
* * * * * * *
92841694 GCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCACAT-TACA-ATAGCCAGTGGAAGGCCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCA-ACACTTATACACAGAGCTAGTGTAAGACCATG
* * *
92841757 TCTGGGACATGGCATCGGCGTAGAGAT-AGGTGCCAGTGTAAGACGTGTTTGGGATATGCATCGG
65 TCTGGGACATGGCATCGGCGTAGAGATGA-GTGCCAGTGTAAGACGTATCTGGGATATGCATCAG
* *
92841821 CCTCAATGATGGTAACCAGTGTAAGACGTGTCTAGGACATGCATCGGCTAAGCTTCGT
129 CCTCAATGATGGTAACCAGTGTAAGACGTGCCTAGGACATGCATCGGCTAAGCTTCAT
*
92841879 GCTAATGTAAGACATGTCTGGGACATGCATCAACACTTATACACGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACTTATACAC-AGAGCTAGTGTAAGACCATG
* * * *
92841944 TCTGGGATATGGCATCGAG-GTAGAGATGAGTGCCGGTGTACGACGTATCTGGGATATTCATCAG
65 TCTGGGACATGGCATCG-GCGTAGAGATGAGTGCCAGTGTAAGACGTATCTGGGATATGCATCAG
* *
92842008 CCTCAATGATGGTAACCAGTGTAAGACGTGCCTGGGACATGCATTGGCTAAGCTTCAT
129 CCTCAATGATGGTAACCAGTGTAAGACGTGCCTAGGACATGCATCGGCTAAGCTTCAT
* * *
92842066 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACTTATACACAAGAACTATTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACTTATACAC-AGAGCTAGTGTAAGACCATG
*
92842131 TCTGGGAGATGGCATCGGC
65 TCTGGGACATGGCATCGGC
92842150 ATCTTAACCA
Statistics
Matches: 240, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
184 4 0.02
185 34 0.14
186 1 0.00
187 199 0.83
188 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (186 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACACTTATACACAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGTATCTGGGATATGCATCAGCC
TCAATGATGGTAACCAGTGTAAGACGTGCCTAGGACATGCATCGGCTAAGCTTCAT
Found at i:92842097 original size:91 final size:91
Alignment explanation
Indices: 92841694--92842099 Score: 298
Period size: 91 Copynumber: 4.4 Consensus size: 91
92841684 TGAGATGAGG
* * * *** * * * *
92841694 GCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCAC-ATTACAATAGCCAGTGGAAGGCCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGATGGTAACCAGTGTAA-GACGTGT
* ***
92841758 CTGGGACATGGCATCGGCGTAGAGATAGGT
65 CTGGGACAT-GCATCGGC-TA-AGCTTCAT
* * * * *
92841788 GCCAGTGTAAGACGTGTTTGGGATATGCATCGGCCTCAATGATGGTAACCAGTGTAAGACGTGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGATGGTAACCAGTGTAAGACGTGTC
* *
92841853 TAGGACATGCATCGGCTAAGCTTCGT
66 TGGGACATGCATCGGCTAAGCTTCAT
* * * * * * * *
92841879 GCTAATGTAAGACATGTCTGGGACATGCATCAACACT-TATACACGAG-AGCTAGTGTAAGACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CTCAAT-GATG-GTAACCAGTGTAAGA-CG
* * * *
92841942 TGTCTGGGATATGGCATCGAGGTAGAG-ATGAGT
62 TGTCTGGGACAT-GCATCG-GCTA-AGCTTCA-T
** * * * * * *
92841975 GCCGGTGTACGACGTATCTGGGATATTCATCAGCCTCAATGATGGTAACCAGTGTAAGACGTGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGATGGTAACCAGTGTAAGACGTGTC
*
92842040 TGGGACATGCATTGGCTAAGCTTCAT
66 TGGGACATGCATCGGCTAAGCTTCAT
92842066 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
92842100 ACTTATACAC
Statistics
Matches: 236, Mismatches: 64, Indels: 27
0.72 0.20 0.08
Matches are distributed among these distances:
91 64 0.27
92 22 0.09
93 25 0.11
94 63 0.27
95 32 0.14
96 30 0.13
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGATGGTAACCAGTGTAAGACGTGTC
TGGGACATGCATCGGCTAAGCTTCAT
Found at i:92842473 original size:71 final size:71
Alignment explanation
Indices: 92842375--92842517 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
92842365 AGCATCATGA
92842375 TAAATGGTGAAACTGTTGTTGTATATTTATTTATATGCAACTTACTAAGCTTTATGCTTACTTTC
1 TAAATGGTGAAACTGTTGTTGTATATTTATTTATATGCAACTTACTAAGCTTTATGCTTACTTTC
92842440 TTTCCT
66 TTTCCT
92842446 TAAATGGTGAAACTGTTGTTGTATATTTATTTATATGCAACTTACTAAGCTTTATGCTTACTTTC
1 TAAATGGTGAAACTGTTGTTGTATATTTATTTATATGCAACTTACTAAGCTTTATGCTTACTTTC
92842511 TTTCCT
66 TTTCCT
92842517 T
1 T
92842518 TTTCTTTTCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.48
Consensus pattern (71 bp):
TAAATGGTGAAACTGTTGTTGTATATTTATTTATATGCAACTTACTAAGCTTTATGCTTACTTTC
TTTCCT
Found at i:92843705 original size:136 final size:136
Alignment explanation
Indices: 92843461--92843745 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
92843451 CATTGGGCCT
** *
92843461 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92843526 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
92843591 ATATGC
131 ATATGC
*
92843597 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAATTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
92843662 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
92843727 ATATGC
131 ATATGC
92843733 AAGCCCATTTGGG
1 AAGCCCATTTGGG
92843746 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Done.