Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 312 of 378
Found at i:95001347 original size:30 final size:30
Alignment explanation
Indices: 95001290--95001347 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
95001280 GTAGTTGTGG
**
95001290 ATAGAAGCTGAAGGTCGAGTCGGGGCAACA
1 ATAGAAGCTGAAGGTCGAGTCAAGGCAACA
* *
95001320 ATAGTAGCTGGAGGTCGAGTCAAGGCAA
1 ATAGAAGCTGAAGGTCGAGTCAAGGCAA
95001348 TAGCGGTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.36, T:0.16
Consensus pattern (30 bp):
ATAGAAGCTGAAGGTCGAGTCAAGGCAACA
Found at i:95002638 original size:15 final size:15
Alignment explanation
Indices: 95002618--95002649 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
95002608 AATTCCCACC
*
95002618 ATCCCAGATAAACAT
1 ATCCCAAATAAACAT
95002633 ATCCCAAATAAACAT
1 ATCCCAAATAAACAT
95002648 AT
1 AT
95002650 GTGACTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.03, T:0.22
Consensus pattern (15 bp):
ATCCCAAATAAACAT
Found at i:95006316 original size:2 final size:2
Alignment explanation
Indices: 95006309--95006343 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95006299 ATGAGTAATT
95006309 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95006344 GCCTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95007553 original size:18 final size:20
Alignment explanation
Indices: 95007519--95007557 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
95007509 TTTTACTTTT
95007519 AATAATGTTTATAATTAATA
1 AATAATGTTTATAATTAATA
95007539 AATAAT-TTT-TAATTAATA
1 AATAATGTTTATAATTAATA
95007557 A
1 A
95007558 CTCTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 3 0.16
20 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
AATAATGTTTATAATTAATA
Found at i:95010087 original size:18 final size:18
Alignment explanation
Indices: 95010066--95010101 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
95010056 CTGTAATTCG
95010066 TTTAAATTTGATTTTTAA
1 TTTAAATTTGATTTTTAA
95010084 TTTAAATTTGATTTTTAA
1 TTTAAATTTGATTTTTAA
95010102 AATTTTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TTTAAATTTGATTTTTAA
Found at i:95013963 original size:5 final size:5
Alignment explanation
Indices: 95013953--95013977 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
95013943 GGTTGAATAA
95013953 GTTTG GTTTG GTTTG GTTTG GTTTG
1 GTTTG GTTTG GTTTG GTTTG GTTTG
95013978 TGTGCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (5 bp):
GTTTG
Found at i:95017987 original size:20 final size:19
Alignment explanation
Indices: 95017964--95018002 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
95017954 GTACGTCTAC
95017964 TTCTTTCCTTCTTTCTCTTT
1 TTCTTTCCTTCTTT-TCTTT
*
95017984 TTCTTTCGTTCTTTTCTTT
1 TTCTTTCCTTCTTTTCTTT
95018003 CTAATGTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (19 bp):
TTCTTTCCTTCTTTTCTTT
Found at i:95021088 original size:30 final size:30
Alignment explanation
Indices: 95021052--95021110 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
95021042 CACATGGGCG
95021052 TGTGACCTATGATTTCATGAAATTTTTCTT
1 TGTGACCTATGATTTCATGAAATTTTTCTT
95021082 TGTGACCTATGATTTCATGAAATTTTTCT
1 TGTGACCTATGATTTCATGAAATTTTTCT
95021111 AAGTGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (30 bp):
TGTGACCTATGATTTCATGAAATTTTTCTT
Found at i:95021618 original size:30 final size:31
Alignment explanation
Indices: 95021576--95021637 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
95021566 GGGGGTGGGA
* *
95021576 TGGGAGGGGAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAGGGGAGTAAAAGTATTGGGAGGAAAG
95021607 TGGGA-GGGAGTAAAAGTATTGGGAGGAAAG
1 TGGGAGGGGAGTAAAAGTATTGGGAGGAAAG
95021637 T
1 T
95021638 AAAAAGGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.19
Consensus pattern (31 bp):
TGGGAGGGGAGTAAAAGTATTGGGAGGAAAG
Found at i:95022121 original size:71 final size:71
Alignment explanation
Indices: 95022000--95022135 Score: 200
Period size: 71 Copynumber: 1.9 Consensus size: 71
95021990 TTTGTATGTG
* * ** * *
95022000 TATTCGAAATAATTATTTAATTTTATAATATTAAAGTTTATTATATCCACAGTGTAGGTGAAAAA
1 TATTCGAAATAATTAATTAATTTTATAATATTAAAATTTACCATACCCACAATGTAGGTGAAAAA
95022065 TAATGA
66 TAATGA
* *
95022071 TATTTGAAATAATTAATTGATTTTATAATATTAAAATTTACCATACCCACAATGTAGGTGAAAAA
1 TATTCGAAATAATTAATTAATTTTATAATATTAAAATTTACCATACCCACAATGTAGGTGAAAAA
95022136 AAATATTTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.39
Consensus pattern (71 bp):
TATTCGAAATAATTAATTAATTTTATAATATTAAAATTTACCATACCCACAATGTAGGTGAAAAA
TAATGA
Found at i:95022167 original size:15 final size:15
Alignment explanation
Indices: 95022147--95022176 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
95022137 AATATTTTAC
*
95022147 ATATAAAAATTATAT
1 ATATAAAAAATATAT
95022162 ATATAAAAAATATAT
1 ATATAAAAAATATAT
95022177 CAAAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAAAAAATATAT
Found at i:95025013 original size:16 final size:16
Alignment explanation
Indices: 95024994--95025025 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95024984 AATTGTTTTA
95024994 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
95025010 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
95025026 GCTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:95025290 original size:50 final size:50
Alignment explanation
Indices: 95025225--95025667 Score: 367
Period size: 50 Copynumber: 8.8 Consensus size: 50
95025215 ACTGAAGCTC
* *
95025225 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* ** * *
95025275 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACACGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
95025325 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
95025377 -CGGGTACGCATAGAAGCCAGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* ** * * * * *
95025426 TCCGGTACATGTAGTAGCCTGGACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * *
95025476 TCTAATACACATAATAGCCTGCACTTAGTACTACACACGTGATCGA--AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * *
95025524 CTACTGGGTATGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTAACAA
1 -T-CT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * *
95025577 TCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTA--AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* *
95025625 ACTGTCTTAAACACATAGTAGCCTGCA-TATAGTACTACACATG
1 TCTG--GT--ACACATAGTAGCCTGCACT-TAGTACTACACATG
95025668 TGTTCTCACA
Statistics
Matches: 314, Mismatches: 66, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
48 6 0.02
49 4 0.01
50 200 0.64
51 71 0.23
52 31 0.10
53 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:95025502 original size:151 final size:151
Alignment explanation
Indices: 95025228--95025665 Score: 621
Period size: 151 Copynumber: 2.9 Consensus size: 151
95025218 GAAGCTCTCT
*
95025228 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
** * * * *
95025293 CTGCACTTAGTACTACACACACGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTA
**
95025358 CACACGTGATCGAAGTTAAC-G
131 CACACGTGATCGAAACT-ACTG
* * * *
95025379 GGTACGCATAGAAGCCAGCACTTAGTACTACACATGCGACCTATCAATCCGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
95025444 CTGGACTTAGTACTACACACGTGACCTAACCATCTAATACACATAATAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTA
95025509 CACACGTGATCGAAACTACTG
131 CACACGTGATCGAAACTACTG
* * *
95025530 GGTATGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* **
95025595 CTGCACTTAGTACTATACACGTGACCTAAAACTGTCTTAA-ACACATAGTAGCCTGCA-TATAGT
66 CTGCACTTAGTACTACACACGTGACCT--AACCATC-TAATACACATAGTAGCCTGCACT-TAGT
95025658 ACTACACA
127 ACTACACA
95025666 TGTGTTCTCA
Statistics
Matches: 255, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
150 2 0.01
151 216 0.85
152 1 0.00
153 33 0.13
154 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTA
CACACGTGATCGAAACTACTG
Found at i:95025542 original size:101 final size:101
Alignment explanation
Indices: 95025437--95025618 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
95025427 CCGGTACATG
* * *
95025437 TAGTAGCCTGGACTTAGTACTACACACGTGACCTAACCATCTAATACACATAATAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACATAATAGCCTGCACTT
95025502 AGTACTACACACGTGATCGAAACTACTGGGTATGCA
66 AGTACTACACACGTGATCGAAACTACTGGGTATGCA
* * ** * *
95025538 TAGTAGCCTGCATTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACATAATAGCCTGCACTT
*
95025603 AGTACTATACACGTGA
66 AGTACTACACACGTGA
95025619 CCTAAAACTG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACATAATAGCCTGCACTT
AGTACTACACACGTGATCGAAACTACTGGGTATGCA
Found at i:95026048 original size:19 final size:20
Alignment explanation
Indices: 95026020--95026066 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
95026010 AAGAACATGT
95026020 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
95026041 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
95026060 TATATAT
1 TATATAT
95026067 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:95029786 original size:7 final size:6
Alignment explanation
Indices: 95029769--95029824 Score: 60
Period size: 6 Copynumber: 8.8 Consensus size: 6
95029759 GTGAAAGAAA
*
95029769 ATTTTT ATTTTT ATTTTT ATTTTT AATTTTT -TTTCAAAT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT -ATTTTT ATTT---TT ATTTTT ATTTTT
95029820 ATTTT
1 ATTTT
95029825 GTAAAAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
5 3 0.07
6 30 0.70
7 6 0.14
8 1 0.02
9 3 0.07
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:95029844 original size:13 final size:14
Alignment explanation
Indices: 95029818--95029846 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
95029808 ATTTTTATTT
95029818 TTATTTTGTAAAAA
1 TTATTTTGTAAAAA
95029832 TTATTTT-TAAAAA
1 TTATTTTGTAAAAA
95029845 TT
1 TT
95029847 TCAATTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (14 bp):
TTATTTTGTAAAAA
Found at i:95030519 original size:20 final size:20
Alignment explanation
Indices: 95030462--95030521 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
95030452 AATTTTAAAA
95030462 ATTTTAAAAAACTATAAAAACT
1 ATTTTAAAAAA--ATAAAAACT
* ** *
95030484 ATTTTTAAAATTTAAAAATT
1 ATTTTAAAAAAATAAAAACT
*
95030504 ATTTTAAAAAAGTAAAAA
1 ATTTTAAAAAAATAAAAA
95030522 AAAAGTTATA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 22 0.71
22 9 0.29
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (20 bp):
ATTTTAAAAAAATAAAAACT
Found at i:95034027 original size:50 final size:51
Alignment explanation
Indices: 95033950--95034058 Score: 157
Period size: 50 Copynumber: 2.2 Consensus size: 51
95033940 GACCATGGCA
* * * *
95033950 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGATAAGTG
1 ACAAGTGATAAATGATACCTTCAGCTACACTTATCTAATCAAGGACAAATG
* *
95034001 A-AAGTGATAAATGATACCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAATGATACCTTCAGCTACACTTATCTAATCAAGGACAAATG
95034051 ACAAGTGA
1 ACAAGTGA
95034059 AAAGTGGTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
50 44 0.86
51 7 0.14
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAATGATACCTTCAGCTACACTTATCTAATCAAGGACAAATG
Found at i:95034092 original size:31 final size:31
Alignment explanation
Indices: 95034054--95034171 Score: 155
Period size: 31 Copynumber: 3.8 Consensus size: 31
95034044 ACAAATGACA
* *
95034054 AGTGAAAAGTGGTAGTTTCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
95034085 AGTGAAAAGTGGTAGCTTCGACTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
95034116 AGTGAAAAATAGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
95034147 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
95034172 AAGTGACAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:95035994 original size:28 final size:29
Alignment explanation
Indices: 95035960--95036044 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 29
95035950 GTAGTTTAGC
95035960 CAAAAAATTAGTAAAATAAGGACTT-AAAAG
1 CAAAAAA--AGTAAAATAAGGACTTCAAAAG
* *
95035990 CAAAAAAAGTTAAATAAGGGCTTCAAAA-
1 CAAAAAAAGTAAAATAAGGACTTCAAAAG
* * * *
95036018 -AAAAAAAGTTAAACAAGGGCTTTAAAA
1 CAAAAAAAGTAAAATAAGGACTTCAAAA
95036045 AATTAAATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 25 0.50
28 14 0.28
29 4 0.08
30 7 0.14
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.19
Consensus pattern (29 bp):
CAAAAAAAGTAAAATAAGGACTTCAAAAG
Found at i:95036029 original size:27 final size:26
Alignment explanation
Indices: 95035973--95036046 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 26
95035963 AAAATTAGTA
*
95035973 AAATAAGGACTTAAAAGCAAAAAAAGTT
1 AAATAAGGGCTTAAAA--AAAAAAAGTT
95036001 AAATAAGGGCTTCAAAAAAAAAAAGTT
1 AAATAAGGGCTT-AAAAAAAAAAAGTT
* *
95036028 AAACAAGGGCTTTAAAAAA
1 AAATAAGGGCTTAAAAAAA
95036047 TTAAATACTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 6 0.14
27 21 0.50
28 11 0.26
29 4 0.10
ACGTcount: A:0.59, C:0.08, G:0.15, T:0.18
Consensus pattern (26 bp):
AAATAAGGGCTTAAAAAAAAAAAGTT
Found at i:95036085 original size:25 final size:25
Alignment explanation
Indices: 95036041--95036097 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
95036031 CAAGGGCTTT
95036041 AAAAAA-TTAAATACTTAAAACTAA
1 AAAAAAGTTAAATACTTAAAACTAA
* * *
95036065 AAAAAAGTT-AATGCTTCAAAAGTTA
1 AAAAAAGTTAAATACTT-AAAACTAA
95036090 AAAAAAGT
1 AAAAAAGT
95036098 AGTGAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (25 bp):
AAAAAAGTTAAATACTTAAAACTAA
Found at i:95036134 original size:29 final size:28
Alignment explanation
Indices: 95036098--95036185 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
95036088 TAAAAAAAGT
95036098 AGTGAAATAAGGACTTAAAAGCAAAAATA
1 AGTGAAATAAGGACTTAAAAGCAAAAA-A
* * * *
95036127 AGTTAAATTAGGGCTTTAAAA--AATTTAAA
1 AGTGAAATAAGGAC-TTAAAAGCAA--AAAA
95036156 AGTGAAATAAGGACTTAAAAGCAAAAAA
1 AGTGAAATAAGGACTTAAAAGCAAAAAA
95036184 AG
1 AG
95036186 GGGGTTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
28 13 0.28
29 23 0.50
30 10 0.22
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (28 bp):
AGTGAAATAAGGACTTAAAAGCAAAAAA
Found at i:95041427 original size:10 final size:10
Alignment explanation
Indices: 95041412--95041450 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
95041402 TATTTTAGCT
95041412 TTTATCTTTA
1 TTTATCTTTA
95041422 TTTATCTTTA
1 TTTATCTTTA
* *
95041432 ATTATCTGTA
1 TTTATCTTTA
95041442 TTTATCTTT
1 TTTATCTTT
95041451 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.21, C:0.10, G:0.03, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:95041438 original size:20 final size:20
Alignment explanation
Indices: 95041413--95041450 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
95041403 ATTTTAGCTT
*
95041413 TTATCTTTATTTATCTTTAA
1 TTATCTGTATTTATCTTTAA
95041433 TTATCTGTATTTATCTTT
1 TTATCTGTATTTATCTTT
95041451 TAGAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.03, T:0.66
Consensus pattern (20 bp):
TTATCTGTATTTATCTTTAA
Found at i:95047426 original size:21 final size:21
Alignment explanation
Indices: 95047402--95047452 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
95047392 AATCAAAGAA
95047402 AAATAA-AATAAATAATAAAGT
1 AAATAATAAT-AATAATAAAGT
* *
95047423 AAATAATAATGATAATAAAAT
1 AAATAATAATAATAATAAAGT
95047444 -AATAATAAT
1 AAATAATAAT
95047453 GACAAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 15 0.56
22 3 0.11
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (21 bp):
AAATAATAATAATAATAAAGT
Found at i:95047459 original size:17 final size:17
Alignment explanation
Indices: 95047423--95047461 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
95047413 ATAATAAAGT
* *
95047423 AAATAATAATGATAATA
1 AAATAATAATAATAACA
*
95047440 AAATAATAATAATGACA
1 AAATAATAATAATAACA
95047457 AAATA
1 AAATA
95047462 TGCACATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (17 bp):
AAATAATAATAATAACA
Found at i:95047513 original size:4 final size:4
Alignment explanation
Indices: 95047489--95047536 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
95047479 TACTAATTTT
* * *
95047489 TAAA TATAA TAAA GAAAA TAAA TAAA TAAA TAAA TACA TAAA TGAA TA
1 TAAA TA-AA TAAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
95047537 TTGAGGAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 29 0.81
5 7 0.19
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:95047694 original size:13 final size:13
Alignment explanation
Indices: 95047672--95047705 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
95047662 TAGTGAGAAA
95047672 AAAAAGAAAAAAAC
1 AAAAA-AAAAAAAC
95047686 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
95047699 AGAAAAA
1 A-AAAAA
95047706 CGAATAGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:95049359 original size:44 final size:44
Alignment explanation
Indices: 95049311--95049894 Score: 388
Period size: 44 Copynumber: 12.9 Consensus size: 44
95049301 AGGAATCGCT
* * * *
95049311 GCTTCAATCTACTCCACTGCAACTTTAGAGAGATAAGATTAGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** * * *
95049355 GCTTCAAT-TTTTCCACTGTAACTTTAGGGAAATAAAATTTGTAATTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT--AA---G--ATTTGTA
* * * * *
95049405 GCCTT-AATCTGTTCCACTGCAGCTTTAGGGAAATAAGATTCGCTA
1 G-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * *
95049450 TCTTCAGTTTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * *
95049494 GTTTTAATC-GCTCCACTGCAACTTTAGGGAGATAAGATTTGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
** ** * * * *
95049538 TTTTCGGTCTACTCCACTGTAACTTCAGGGGGATAAGATCTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * *
95049582 ACTTCAATTTACTCCATTGCAACTTCAGGGAGATCAGATTTGTAA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
* ** * *
95049627 TTTG-TTGGCTTAATCTGTTCCACTGCAACTTTTGGGAAAGAAGATTTGTAA
1 ---GCTT--C--AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
* * * *
95049678 TCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * *
95049721 GACTTCAACCTGCTCCACTACAACTTCAGGGAAATAA-AGTTTATA
1 G-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTA
* * *
95049766 GCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
** * * *
95049811 TTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** *
95049855 GCTTCAATCTGCTCCACTAAAACTTCAGAGAGATAAGATT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
95049895 CACCATTATA
Statistics
Matches: 418, Mismatches: 95, Indels: 54
0.74 0.17 0.10
Matches are distributed among these distances:
43 50 0.12
44 161 0.39
45 132 0.32
46 1 0.00
47 2 0.00
48 1 0.00
49 5 0.01
50 10 0.02
51 56 0.13
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
Found at i:95049519 original size:88 final size:89
Alignment explanation
Indices: 95049408--95049895 Score: 245
Period size: 89 Copynumber: 5.4 Consensus size: 89
95049398 ATTTGTAGCC
* * * * *
95049408 TTAATCTGTTCCACTGCAGCTTTAGGGAAATAAGATTCGCTATCTTCAGTTTGCTCCATTGCAAC
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAAC
95049473 TTCAGGGAGATAAGACTTGTGGTT
66 TTCAGGGAGATAAGACTTGTGGTT
* * * * *
95049497 TTAATC-GCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATTTTCGGTCTACTCCACTGTAAC
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAAC
* ***
95049561 TTCAGGGGGATAAGA-TCTGTAACT
66 TTCAGGGAGATAAGACT-TGTGGTT
* * * * * * * * * * **
95049585 TCAATTTACTCCATTGCAACTTCAGGGAGATCAGATTTG-TAATTTGTTGGCTTAATCTGTTCCA
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCGCT-A--TCTT--C--AGTCTACTCCA
** * * * **
95049649 CTGCAACTTTTGGGAAAGAAGATTTGTAATCT
59 CTGCAACTTCAGGGAGATAAGACTTGTGGT-T
* * * ** * *
95049681 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TGA-CTTCAACCTGCTCCACTACA
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGA-TTCGCT-ATCTTCAGTCTACTCCACTGCA
* * * * *
95049743 ACTTCAGGGAAATAA-AGTTTATAGCT
64 ACTTCAGGGAGATAAGA-CTTGTGGTT
* * * * * * * * * *
95049769 TTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATTTTTAATCTGCTCCACTGCAAC
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAAC
*
95049834 TTCAGGGAGATAAGA-TTAGTGGCT
66 TTCAGGGAGATAAGACTT-GTGGTT
* ** * * *
95049858 TCAATCTGCTCCACTAAAACTTCAGAGAGATAAGATTC
1 TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTC
95049896 ACCATTATAA
Statistics
Matches: 317, Mismatches: 64, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
87 3 0.01
88 109 0.34
89 133 0.42
90 1 0.00
91 4 0.01
93 3 0.01
95 28 0.09
96 34 0.11
97 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (89 bp):
TTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAAC
TTCAGGGAGATAAGACTTGTGGTT
Found at i:95049714 original size:228 final size:228
Alignment explanation
Indices: 95049318--95049846 Score: 593
Period size: 228 Copynumber: 2.3 Consensus size: 228
95049308 GCTGCTTCAA
* * * * *
95049318 TCTACTCCACTGCAACTTTAGAGAGATAAGATTAGTAGCTTCAATTTTTCCACTGTAACTTTAGG
1 TCTACTCCACTGCAACTTCAGAGAGATAAGATTAGTAACTTCAATTTCTCCACTGCAACTTCAGG
* *
95049383 GAAATAAAATTTGTAATTTGTAGCCTTAATCTGTTCCACTGCAGCTTTAGGGAAATAAGATTCGC
66 GAAATAAAATTTGTAATTTGTAGCCTTAATCTGTTCCACTGCAACTTTAGGGAAAGAAGATTCGC
* * ** * * *
95049448 TATCTTCAGTTTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTGGTTTTAATC-GCTCCACTG
131 TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCACTA
* *
95049512 CAACTTTAGGGAGATAAGATTTGCTATTTTCGG
196 CAACTTCAGGGAAATAAGATTTGCTATTTTCGG
* * * *
95049545 TCTACTCCACTGTAACTTCAGGGGGATAAGATCT-GTAACTTCAATTTACTCCATTGCAACTTCA
1 TCTACTCCACTGCAACTTCAGAGAGATAAGAT-TAGTAACTTCAATTT-CTCCACTGCAACTTCA
* * * * * * *
95049609 GGGAGATCAGATTTGTAATTTGTTGGCTTAATCTGTTCCACTGCAACTTTTGGGAAAGAAGATTT
64 GGGAAATAAAATTTGTAATTTGTAGCCTTAATCTGTTCCACTGCAACTTTAGGGAAAGAAGATTC
*
95049674 G-TAATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCA
129 GCT-ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCA
* * **
95049738 CTACAACTTCAGGGAAATAA-AGTTT-ATAGCTTT-AA
193 CTACAACTTCAGGGAAATAAGA-TTTGCTA-TTTTCGG
* * * ** * *
95049773 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATTTTTAATCTGCTCCACTGCAACTTCA
1 TCTACTCCACTGCAACTTCAGAGAGATAAGATTAG-TAACTTCAAT-TTCTCCACTGCAACTTCA
*
95049838 GGGAGATAA
64 GGGAAATAA
95049847 GATTAGTGGC
Statistics
Matches: 250, Mismatches: 43, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
227 42 0.17
228 148 0.59
229 59 0.24
230 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (228 bp):
TCTACTCCACTGCAACTTCAGAGAGATAAGATTAGTAACTTCAATTTCTCCACTGCAACTTCAGG
GAAATAAAATTTGTAATTTGTAGCCTTAATCTGTTCCACTGCAACTTTAGGGAAAGAAGATTCGC
TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCACTA
CAACTTCAGGGAAATAAGATTTGCTATTTTCGG
Found at i:95049827 original size:89 final size:88
Alignment explanation
Indices: 95049459--95049894 Score: 281
Period size: 89 Copynumber: 4.9 Consensus size: 88
95049449 ATCTTCAGTT
* * * * * * *
95049459 TGCTCCATTGCAACTTCAGGGAGATAAGACTT-GTGGTTTTAATC-GCTCCACTGCAACTTTAGG
1 TGCTCCACTACAACTTCAGGGAAATAAGA-TTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGA
* ***
95049522 GAGATAAGATTTGCT-ATTTTCGGTC
65 GAGATAAGATTTG-TGA-CTTCAACC
* ** ** * * * * * *
95049547 TACTCCACTGTAACTTCAGGGGGATAAGATCT-GTAACTTCAATTTACTCCATTGCAACTTCAGG
1 TGCTCCACTACAACTTCAGGGAAATAAGAT-TAGTAGCTTTAATCTGCTCCACTGCAACTTCAGA
* *
95049611 GAGATCAGATTTGTAATTTGTTGGCTT-AATC
65 GAGAT-A-A---G--ATTTG-TGACTTCAACC
* * ** * * * * *
95049642 TGTTCCACTGCAACTTTTGGGAAAGAAGATTTGTAATCTTTAGTCTGCTCCACTGCAACTTCAGG
1 TGCTCCACTACAACTTCAGGGAAATAAGATTAGT-AGCTTTAATCTGCTCCACTGCAACTTCAGA
*
95049707 GAGATAAGACTTGTGACTTCAACC
65 GAGATAAGATTTGTGACTTCAACC
* *
95049731 TGCTCCACTACAACTTCAGGGAAATAAAGTTTA-TAGCTTTAATCTGCTCTACTGCAACTTCAGA
1 TGCTCCACTACAACTTCAGGGAAAT-AAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGA
* * * *
95049795 GAGATAAGATTTGTTATTTTTAATC
65 GAGATAAGATTTGTGA-CTTCAACC
* * * * **
95049820 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTCAATCTGCTCCACTAAAACTTCAGAG
1 TGCTCCACTACAACTTCAGGGAAATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAG
95049885 AGATAAGATT
66 AGATAAGATT
95049895 CACCATTATA
Statistics
Matches: 274, Mismatches: 58, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
87 1 0.00
88 84 0.31
89 114 0.42
90 6 0.02
91 2 0.01
94 3 0.01
95 27 0.10
96 37 0.14
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (88 bp):
TGCTCCACTACAACTTCAGGGAAATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAG
AGATAAGATTTGTGACTTCAACC
Found at i:95049837 original size:133 final size:136
Alignment explanation
Indices: 95049496--95049882 Score: 424
Period size: 133 Copynumber: 2.8 Consensus size: 136
95049486 GACTTGTGGT
* ** * *
95049496 TTTAATC-GCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATTTTCGGTCTACTCCACTGTAA
1 TTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATTTTTAGTCTGCTCCACTGCAA
* * * * * * * * *
95049560 CTTCAGGGGGATAAGATCTGTAACTTCAATTTACTCCATTGCAACTTCAGGGAGATCAGATTTGT
66 CTTCAGGGAGATAAGAT-TGTGACTTCAATCTGCTCCACTACAACTTCAGGGAAATCAAAGTTGT
* *
95049625 AATTTGT
130 AATTAGC
* * * * * *
95049632 TGGCTTAATCTGTTCCACTGCAACTTTTGGGAAAGAAGATTTGTAATCTTTAGTCTGCTCCACTG
1 T---TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATTTTTAGTCTGCTCCACTG
*
95049697 CAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCACTACAACTTCAGGGAAAT-AAAGT
63 CAACTTCAGGGAGATAAGA-TTGTGACTTCAATCTGCTCCACTACAACTTCAGGGAAATCAAAGT
95049761 T-T-A-TAGC
127 TGTAATTAGC
* * * *
95049768 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATTTTTAATCTGCTCCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATTTTTAGTCTGCTCCACTGCAA
* *
95049833 CTTCAGGGAGATAAGATTAGTGGCTTCAATCTGCTCCACTAAAACTTCAG
66 CTTCAGGGAGATAAGATT-GTGACTTCAATCTGCTCCACTACAACTTCAG
95049883 AGAGATAAGA
Statistics
Matches: 209, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
132 2 0.01
133 98 0.47
136 4 0.02
137 1 0.00
138 1 0.00
139 10 0.05
140 92 0.44
141 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (136 bp):
TTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATTTTTAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTGTGACTTCAATCTGCTCCACTACAACTTCAGGGAAATCAAAGTTGTA
ATTAGC
Found at i:95051903 original size:3 final size:3
Alignment explanation
Indices: 95051891--95051956 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
95051881 GGGTGATCAG
*
95051891 TCT T-T TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
95051938 TCT TCT TCT TCT TAT TCT T
1 TCT TCT TCT TCT TCT TCT T
95051957 TGATGTTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:95054184 original size:16 final size:17
Alignment explanation
Indices: 95054153--95054185 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
95054143 AGGGATGAAG
95054153 AAAAATCCAAAGAATAA
1 AAAAATCCAAAGAATAA
*
95054170 AAAAATCTAAA-AATAA
1 AAAAATCCAAAGAATAA
95054186 TTATCTGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.73, C:0.09, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAATCCAAAGAATAA
Found at i:95061561 original size:12 final size:13
Alignment explanation
Indices: 95061544--95061591 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
95061534 ATCAAAGAAA
95061544 AATAA-AATAAAT
1 AATAATAATAAAT
*
95061556 AATAA-AGTAAAT
1 AATAATAATAAAT
* *
95061568 AATAATGATAAAA
1 AATAATAATAAAT
95061581 AATAATAATAA
1 AATAATAATAA
95061592 TGACAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 16 0.53
13 14 0.47
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:95065638 original size:2 final size:2
Alignment explanation
Indices: 95065631--95065657 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
95065621 TGTAATCTTC
95065631 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
95065658 TAAAATCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95068294 original size:33 final size:32
Alignment explanation
Indices: 95068257--95068318 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
95068247 CTAAATCCTG
95068257 TTAGTGACA-TGAACACAACAAAGGTGATTGTTA
1 TTAGTGACACT-AACACAACAAAGGT-ATTGTTA
* *
95068290 TTAGTGAGACTAACACAACAGAGGTATTG
1 TTAGTGACACTAACACAACAAAGGTATTG
95068319 GCAACGTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 4 0.15
33 21 0.81
34 1 0.04
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.26
Consensus pattern (32 bp):
TTAGTGACACTAACACAACAAAGGTATTGTTA
Found at i:95079279 original size:30 final size:30
Alignment explanation
Indices: 95079245--95079302 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
95079235 TTTTCAGGCA
* *
95079245 TAGGGATAAAATGGTCATTTTGCCAAAGTC
1 TAGGGACAAAATGGTCATTTTACCAAAGTC
* *
95079275 TAGGGGCGAAATGGTCATTTTACCAAAG
1 TAGGGACAAAATGGTCATTTTACCAAAG
95079303 ATGTAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAATGGTCATTTTACCAAAGTC
Found at i:95079714 original size:47 final size:44
Alignment explanation
Indices: 95079642--95080002 Score: 262
Period size: 47 Copynumber: 7.7 Consensus size: 44
95079632 TGATTTGTGT
* * *
95079642 GCCAGTGTAAGACATGTCTGAGACATGCTTCGGACACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACA-GATGAGA
* *
95079688 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA--CAGATGAGA
* * * * *
95079736 GCTAGTGTAAGGCATGTCTGGGACATGCATCAGC-CATACTGTGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGA---TGAGA
* * *
95079782 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAC--AGATGAGA
*
95079830 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---C-ACAGATGAGA
* *** * *
95079877 GCCAGTGTAAGACGTGTCTGGGACGCACATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGATG-AGA
* * *
95079921 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--C--AGATGAGA
95079969 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
95080003 ACAATATATC
Statistics
Matches: 249, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
43 8 0.03
44 30 0.12
46 38 0.15
47 88 0.35
48 57 0.23
49 19 0.08
50 7 0.03
51 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGATGAGA
Found at i:95079806 original size:94 final size:93
Alignment explanation
Indices: 95079640--95080002 Score: 368
Period size: 94 Copynumber: 3.9 Consensus size: 93
95079630 GGTGATTTGT
* * * * * * *
95079640 GTGCCAGTGTAAGACATGTCTGAGACATGCTTCGGACACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
*
95079705 TCTGGGACATGGCATCGGCATCCAGACGA
66 TCTGGGACATGGCATCGGCATCAAGA-GA
* * * * * *
95079734 GGGCTAGTGTAAGGCATGTCTGGGACATGCATCAGCCATACTGTGATAGCTAGTATAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
95079799 TCTGGGACATGGCATCGGCA-CAGAGATGA
66 TCTGGGACATGGCATCGGCATCA-AGA-GA
* *
95079828 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGAC
* * *
95079889 CGTGTCTGGGAC--GCACATCGGC-T-AAGAGTT
62 CATGTCTGGGACATG-GCATCGGCATCAAGAG-A
*
95079919 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACC
95079983 ATGTCTGGGACATGGCATCG
63 ATGTCTGGGACATGGCATCG
95080003 ACAATATATC
Statistics
Matches: 222, Mismatches: 30, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
90 1 0.00
91 36 0.16
92 15 0.07
93 25 0.11
94 130 0.59
95 15 0.07
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (93 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATCAAGAGA
Found at i:95083915 original size:2 final size:2
Alignment explanation
Indices: 95083908--95083949 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
95083898 TTAAATTTTA
95083908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95083950 TTGTTCTAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95085530 original size:18 final size:18
Alignment explanation
Indices: 95085508--95085552 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
95085498 ACCAAACTTC
*
95085508 TTTTATCTATATAA-TAT
1 TTTTATATATATAATTAT
95085525 TATTTATATATATAATTAT
1 T-TTTATATATATAATTAT
95085544 TTTTATATA
1 TTTTATATA
95085553 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTATATATATAATTAT
Found at i:95085532 original size:14 final size:16
Alignment explanation
Indices: 95085510--95085552 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
95085500 CAAACTTCTT
*
95085510 TTATCTATATA-AT-A
1 TTATTTATATATATAA
95085524 TTATTTATATATATAA
1 TTATTTATATATATAA
*
95085540 TTATTTTTATATA
1 TTATTTATATATA
95085553 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.40
15 2 0.08
16 13 0.52
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATTTATATATATAA
Found at i:95085536 original size:16 final size:17
Alignment explanation
Indices: 95085515--95085553 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
95085505 TTCTTTTATC
95085515 TATATAAT-ATTATTTA
1 TATATAATAATTATTTA
*
95085531 TATAT-ATAATTATTTT
1 TATATAATAATTATTTA
95085547 TATATAA
1 TATATAA
95085554 AAAAAAAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 17 0.85
17 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATAATAATTATTTA
Found at i:95090459 original size:39 final size:39
Alignment explanation
Indices: 95090416--95090495 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
95090406 TATTTAAAAT
95090416 CAAATAATTTAATATTTTTTTTTACCATTTGTAGTTGAA
1 CAAATAATTTAATATTTTTTTTTACCATTTGTAGTTGAA
95090455 CAAATAATTTAATATTTTTTTTTACCATTTGTAGTTGAA
1 CAAATAATTTAATATTTTTTTTTACCATTTGTAGTTGAA
95090494 CA
1 CA
95090496 TCGGATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (39 bp):
CAAATAATTTAATATTTTTTTTTACCATTTGTAGTTGAA
Found at i:95090626 original size:7 final size:7
Alignment explanation
Indices: 95090616--95090672 Score: 62
Period size: 7 Copynumber: 8.1 Consensus size: 7
95090606 ATAATTGAGG
95090616 ATTGAAA
1 ATTGAAA
95090623 ATTGAAA
1 ATTGAAA
95090630 ATTGAAA
1 ATTGAAA
*
95090637 ATTGGAA
1 ATTGAAA
*
95090644 AGTGAAA
1 ATTGAAA
95090651 ATT-AAGA
1 ATTGAA-A
* *
95090658 TTTGAAG
1 ATTGAAA
95090665 ATTGAAA
1 ATTGAAA
95090672 A
1 A
95090673 CATAAAATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
6 2 0.05
7 36 0.90
8 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (7 bp):
ATTGAAA
Found at i:95090634 original size:21 final size:21
Alignment explanation
Indices: 95090608--95090672 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
95090598 TTTAGAAAAT
*
95090608 AATTGAGGATTGAAAATTGAA
1 AATTGAAGATTGAAAATTGAA
* * *
95090629 AATTGAAAATTGGAAAGTGAA
1 AATTGAAGATTGAAAATTGAA
*
95090650 AATT-AAGATTTGAAGATTGAA
1 AATTGAAGA-TTGAAAATTGAA
95090671 AA
1 AA
95090673 CATAAAATTA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 3 0.09
21 32 0.91
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.28
Consensus pattern (21 bp):
AATTGAAGATTGAAAATTGAA
Found at i:95090710 original size:7 final size:7
Alignment explanation
Indices: 95090700--95090725 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
95090690 GGGATTGGAT
95090700 ATTGAAG
1 ATTGAAG
95090707 ATTGAAG
1 ATTGAAG
95090714 ATTGAAG
1 ATTGAAG
95090721 ATTGA
1 ATTGA
95090726 GAATTAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (7 bp):
ATTGAAG
Found at i:95092016 original size:19 final size:19
Alignment explanation
Indices: 95091992--95092029 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
95091982 CAATTGAGGG
95091992 TAATTAGCGACTTAATTGA
1 TAATTAGCGACTTAATTGA
* *
95092011 TAATTAGTGATTTAATTGA
1 TAATTAGCGACTTAATTGA
95092030 AAATAGGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TAATTAGCGACTTAATTGA
Found at i:95092784 original size:18 final size:18
Alignment explanation
Indices: 95092757--95092797 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
95092747 ATGGAATTTT
95092757 AAAA-GATAATAAAGGGC
1 AAAATGATAATAAAGGGC
95092774 AAAATGATAATAAAGGGC
1 AAAATGATAATAAAGGGC
95092792 AAAATG
1 AAAATG
95092798 GTCAATTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.59, C:0.05, G:0.22, T:0.15
Consensus pattern (18 bp):
AAAATGATAATAAAGGGC
Found at i:95092884 original size:20 final size:21
Alignment explanation
Indices: 95092850--95092903 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
95092840 TGATGATATT
*
95092850 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
95092871 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
95092891 TTTTATTATTTTA
1 TTATATTATTTTA
95092904 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:95092907 original size:3 final size:3
Alignment explanation
Indices: 95092889--95092937 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
95092879 TTTAATGAGA
*
95092889 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
95092934 TAT T
1 TAT T
95092938 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:95092909 original size:11 final size:11
Alignment explanation
Indices: 95092893--95092931 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
95092883 ATGAGATATT
95092893 TTATTATTTTA
1 TTATTATTTTA
*
95092904 TTATTATTTCA
1 TTATTATTTTA
95092915 TTATTATTTTA
1 TTATTATTTTA
95092926 TTATTA
1 TTATTA
95092932 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:95092917 original size:19 final size:19
Alignment explanation
Indices: 95092889--95092930 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
95092879 TTTAATGAGA
*
95092889 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
95092908 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
95092927 TATT
1 TATT
95092931 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:95095030 original size:54 final size:54
Alignment explanation
Indices: 95094955--95095062 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
95094945 TAATTGTCGT
95094955 TGACAATACTCTATGAGTTTATATTACAGGGGATATAGCCTGGACTGGTAATCC
1 TGACAATACTCTATGAGTTTATATTACAGGGGATATAGCCTGGACTGGTAATCC
*
95095009 TGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGACTGGTAATCC
1 TGACAATACTCTATGAGTTTATATTACAGGGGATATAGCCTGGACTGGTAATCC
95095063 CACTGTAAGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (54 bp):
TGACAATACTCTATGAGTTTATATTACAGGGGATATAGCCTGGACTGGTAATCC
Found at i:95095358 original size:137 final size:136
Alignment explanation
Indices: 95095112--95095723 Score: 1053
Period size: 137 Copynumber: 4.5 Consensus size: 136
95095102 ATGAAATGTG
95095112 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-TAGAAATGTGTAAGACCATGGTTGAAAGA
*
95095177 TACCATGGCAGCATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
*
95095242 GAAATAA
130 GAAAGAA
95095249 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-TAGAAATGTGTAAGACCATGGTTGAAAGA
95095314 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
95095379 GAAAGAA
130 GAAAGAA
* * *
95095386 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAACGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAATGTGTAAGACCATGGTTGAAAGA
95095451 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
95095516 GAAAGAA
130 GAAAGAA
*
95095523 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAATGTGTAAGACCATGGTTGAAAGA
* *
95095588 TACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
95095653 GAAATGAA
130 GAAA-GAA
* * * * *
95095661 CAAGACCATGGTTTAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAG-AAATGTGTAAGACCATGGTTGAAA
95095724 TACACTATGG
Statistics
Matches: 455, Mismatches: 17, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
136 2 0.00
137 395 0.87
138 58 0.13
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (136 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
AAAGAA
Found at i:95095438 original size:183 final size:184
Alignment explanation
Indices: 95095102--95095723 Score: 959
Period size: 183 Copynumber: 3.4 Consensus size: 184
95095092 GCTCTGTGAA
* *
95095102 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TTAGAAATGTGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT-GAAATGAGTAAGACCA
*
95095166 TGGTTGAAAGATACCATGGCAGCATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
* * **
95095231 CAACGTGACATGAAAT-AATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
130 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095285 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCA
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCA
* * ** *
95095349 TGGTTGAAAGATACCATGGCAACGTGACATGAAA-GAATAAGGCCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
*
95095413 CAACCTGATATGAAATGTGTAAGACCATGGTTGAACGATACCATGGCAACATGAT
130 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095468 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA-GAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
*
95095532 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
*
95095597 AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
131 AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** *
95095651 ATGAAATGAACAAGACCATGGTTTAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCA
*
95095715 TAGTTGAAA
65 TGGTTGAAA
95095724 TACACTATGG
Statistics
Matches: 401, Mismatches: 31, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
182 84 0.21
183 297 0.74
184 20 0.05
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (184 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:95095735 original size:46 final size:46
Alignment explanation
Indices: 95095102--95095723 Score: 941
Period size: 46 Copynumber: 13.6 Consensus size: 46
95095092 GCTCTGTGAA
95095102 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
95095148 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095194 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**
95095240 ATGAAAT-AATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
95095285 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095331 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
95095377 ATGAAA-GAATAAGGCCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
95095422 ATGAAATGTGTAAGACCATGGTTGAACGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095468 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**
95095514 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095559 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
95095605 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * *
95095651 ATGAAATGAACAAGACCATGGTTTAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
95095697 A-GAAAATGAGTAAGACCATAGTTGAAA
1 ATG-AAATGTGTAAGACCATGGTTGAAA
95095724 TACACTATGG
Statistics
Matches: 523, Mismatches: 45, Indels: 16
0.90 0.08 0.03
Matches are distributed among these distances:
44 1 0.00
45 122 0.23
46 398 0.76
47 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:95096434 original size:5 final size:5
Alignment explanation
Indices: 95096424--95096448 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
95096414 TATTTGTAAC
95096424 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
95096449 AGTTACCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:95100772 original size:9 final size:9
Alignment explanation
Indices: 95100758--95100785 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
95100748 TTTAGCTATA
95100758 TATTTTCTT
1 TATTTTCTT
95100767 TATTTTCTT
1 TATTTTCTT
95100776 TATTTTCTT
1 TATTTTCTT
95100785 T
1 T
95100786 TGTTGCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79
Consensus pattern (9 bp):
TATTTTCTT
Found at i:95102105 original size:60 final size:60
Alignment explanation
Indices: 95102041--95102168 Score: 238
Period size: 60 Copynumber: 2.1 Consensus size: 60
95102031 TAATAATATC
* *
95102041 TTAATTTATATTTGCAATACTAACTTGTAAATCATTTAGATTAGTAATTATTTTCGGTAA
1 TTAATTTATATTTGCAATACTAACTTGTAAATCATTTAGATTAGTAACTATTTTCGATAA
95102101 TTAATTTATATTTGCAATACTAACTTGTAAATCATTTAGATTAGTAACTATTTTCGATAA
1 TTAATTTATATTTGCAATACTAACTTGTAAATCATTTAGATTAGTAACTATTTTCGATAA
95102161 TTAATTTA
1 TTAATTTA
95102169 ATGAGAAATT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (60 bp):
TTAATTTATATTTGCAATACTAACTTGTAAATCATTTAGATTAGTAACTATTTTCGATAA
Found at i:95102168 original size:30 final size:29
Alignment explanation
Indices: 95102074--95102168 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 29
95102064 CTTGTAAATC
*
95102074 ATTTAGATTAGTAATTATTTTCGGTAATTA
1 ATTTAGATTAGTAACTATTTTC-GTAATTA
* * * ** * *
95102104 ATTTATATTTGCAATACTAACTT-GTAAATC
1 ATTTAGATTAG-TA-ACTATTTTCGTAATTA
95102134 ATTTAGATTAGTAACTATTTTCGATAATTA
1 ATTTAGATTAGTAACTATTTTCG-TAATTA
95102164 ATTTA
1 ATTTA
95102169 ATGAGAAATT
Statistics
Matches: 46, Mismatches: 15, Indels: 8
0.67 0.22 0.12
Matches are distributed among these distances:
28 6 0.13
29 2 0.04
30 32 0.70
31 1 0.02
32 5 0.11
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (29 bp):
ATTTAGATTAGTAACTATTTTCGTAATTA
Found at i:95102533 original size:2 final size:2
Alignment explanation
Indices: 95102526--95102551 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95102516 TGTTTGCAAC
95102526 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95102552 GTAAATTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95104147 original size:58 final size:58
Alignment explanation
Indices: 95104078--95104193 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
95104068 CACCCGAGAT
95104078 AGCTCGCAATTTAATGGATAGGAATAAACTTTCAGGCGTTTTCTTTTACTAAATGATA
1 AGCTCGCAATTTAATGGATAGGAATAAACTTTCAGGCGTTTTCTTTTACTAAATGATA
95104136 AGCTCGCAATTTAATGGATAGGAATAAACTTTCAGGCGTTTTCTTTTACTAAATGATA
1 AGCTCGCAATTTAATGGATAGGAATAAACTTTCAGGCGTTTTCTTTTACTAAATGATA
95104194 TTTTTGTAGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (58 bp):
AGCTCGCAATTTAATGGATAGGAATAAACTTTCAGGCGTTTTCTTTTACTAAATGATA
Found at i:95108688 original size:5 final size:5
Alignment explanation
Indices: 95108678--95108706 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
95108668 AAATCTATGT
95108678 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
95108707 TCACAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:95114678 original size:3 final size:3
Alignment explanation
Indices: 95114670--95114734 Score: 69
Period size: 3 Copynumber: 21.7 Consensus size: 3
95114660 GTCCTCACCG
* * * * *
95114670 TCA TCA TCA TCA TCC TCA TCT TGA TCA TCA TCA -GA CTCC TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA -TCA TCA TCA
95114715 TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TC
95114735 TTTACCCTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
2 1 0.02
3 49 0.98
ACGTcount: A:0.28, C:0.35, G:0.03, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:95116405 original size:16 final size:16
Alignment explanation
Indices: 95116384--95116415 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95116374 GAAATTCCAA
*
95116384 ATATATACATACATAG
1 ATATATAAATACATAG
95116400 ATATATAAATACATAG
1 ATATATAAATACATAG
95116416 CAGTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.31
Consensus pattern (16 bp):
ATATATAAATACATAG
Found at i:95122238 original size:18 final size:18
Alignment explanation
Indices: 95122217--95122277 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
95122207 AACAATATAA
95122217 AATTAATTTTTAAGATGC
1 AATTAATTTTTAAGATGC
** * **
95122235 AATTAA-TTCAAACA-AA
1 AATTAATTTTTAAGATGC
95122251 ATATTAATTTTTAAGATGC
1 A-ATTAATTTTTAAGATGC
95122270 AATTAATT
1 AATTAATT
95122278 CAAACAAAAT
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
16 1 0.03
17 10 0.33
18 18 0.60
19 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (18 bp):
AATTAATTTTTAAGATGC
Found at i:95122257 original size:35 final size:35
Alignment explanation
Indices: 95122218--95122293 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
95122208 ACAATATAAA
95122218 ATTAATTTTTAAGATGCAATTAATTCAAACAAAAT
1 ATTAATTTTTAAGATGCAATTAATTCAAACAAAAT
95122253 ATTAATTTTTAAGATGCAATTAATTCAAACAAAAT
1 ATTAATTTTTAAGATGCAATTAATTCAAACAAAAT
95122288 ATTAAT
1 ATTAAT
95122294 GTAACTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (35 bp):
ATTAATTTTTAAGATGCAATTAATTCAAACAAAAT
Found at i:95126521 original size:24 final size:24
Alignment explanation
Indices: 95126492--95126542 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
95126482 GATGAATTCT
95126492 ATGGCTGAATGATGATACATTGAG
1 ATGGCTGAATGATGATACATTGAG
95126516 ATGGCTGAATGATGATACATTGAG
1 ATGGCTGAATGATGATACATTGAG
95126540 ATG
1 ATG
95126543 CATGTTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (24 bp):
ATGGCTGAATGATGATACATTGAG
Found at i:95127167 original size:28 final size:28
Alignment explanation
Indices: 95127127--95127294 Score: 142
Period size: 28 Copynumber: 6.0 Consensus size: 28
95127117 AGTTATGAAA
* *
95127127 TATATGTAGAAGTTCGTAAGGACTATCT
1 TATATGTGGAAGTTCATAAGGACTATCT
* *
95127155 TATATGTGGAAGTCCACCAA-GACTATCT
1 TATATGTGGAAGTTCA-TAAGGACTATCT
** * * * *
95127183 TATATGTAAAAGTTTATTAGAATTATCT
1 TATATGTGGAAGTTCATAAGGACTATCT
* *
95127211 TATATGTGGAAGTTCGTTAGGACTATCT
1 TATATGTGGAAGTTCATAAGGACTATCT
* * *
95127239 TATATGTGAAAGTTCATCAA-AACTATAT
1 TATATGTGGAAGTTCAT-AAGGACTATCT
* * *
95127267 TATATGTGGAAGTCCATCATGACTATCT
1 TATATGTGGAAGTTCATAAGGACTATCT
95127295 CTATGATTTA
Statistics
Matches: 108, Mismatches: 28, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
27 2 0.02
28 103 0.95
29 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (28 bp):
TATATGTGGAAGTTCATAAGGACTATCT
Found at i:95127196 original size:56 final size:56
Alignment explanation
Indices: 95127127--95127294 Score: 194
Period size: 56 Copynumber: 3.0 Consensus size: 56
95127117 AGTTATGAAA
* * * *
95127127 TATATGTAGAAGTTCGTAAGGACTATCTTATATGTGGAAGTCCACCAAGACTATCT
1 TATATGTAAAAGTTCATAAGAACTATCTTATATGTGGAAGTCCATCAAGACTATCT
* * * * * * *
95127183 TATATGTAAAAGTTTATTAGAATTATCTTATATGTGGAAGTTCGTTAGGACTATCT
1 TATATGTAAAAGTTCATAAGAACTATCTTATATGTGGAAGTCCATCAAGACTATCT
* * *
95127239 TATATGTGAAAGTTCATCAA-AACTATATTATATGTGGAAGTCCATCATGACTATCT
1 TATATGTAAAAGTTCAT-AAGAACTATCTTATATGTGGAAGTCCATCAAGACTATCT
95127295 CTATGATTTA
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
56 90 0.99
57 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (56 bp):
TATATGTAAAAGTTCATAAGAACTATCTTATATGTGGAAGTCCATCAAGACTATCT
Found at i:95127294 original size:84 final size:84
Alignment explanation
Indices: 95127127--95127294 Score: 203
Period size: 84 Copynumber: 2.0 Consensus size: 84
95127117 AGTTATGAAA
* * *
95127127 TATATGTAGAAGTTCGTAAGGACTATCTTATATGTGGAAGTCCACCAAGACTATCTTATATGTAA
1 TATATGTAGAAGTTCGTAAGGACTATCTTATATGTGAAAGTCCACCAAAACTATATTATATGTAA
** * *
95127192 AAGTTTATTAGAATTATCT
66 AAGTCCATCAGAACTATCT
* * * * **
95127211 TATATGTGGAAGTTCGTTAGGACTATCTTATATGTGAAAGTTCATCAAAACTATATTATATGTGG
1 TATATGTAGAAGTTCGTAAGGACTATCTTATATGTGAAAGTCCACCAAAACTATATTATATGTAA
95127276 AAGTCCATCATG-ACTATCT
66 AAGTCCATCA-GAACTATCT
95127295 CTATGATTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
84 69 0.99
85 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (84 bp):
TATATGTAGAAGTTCGTAAGGACTATCTTATATGTGAAAGTCCACCAAAACTATATTATATGTAA
AAGTCCATCAGAACTATCT
Found at i:95127593 original size:20 final size:20
Alignment explanation
Indices: 95127568--95127617 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
95127558 TCAAGATTTT
*
95127568 GTATCGATACATTTTCTCAA
1 GTATCGATACATTTGCTCAA
* *
95127588 GTATCGATACCTTTGCTCGA
1 GTATCGATACATTTGCTCAA
*
95127608 GTATTGATAC
1 GTATCGATAC
95127618 TCGGGGTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (20 bp):
GTATCGATACATTTGCTCAA
Found at i:95138182 original size:48 final size:48
Alignment explanation
Indices: 95138123--95138417 Score: 335
Period size: 48 Copynumber: 6.2 Consensus size: 48
95138113 TATGTGTGTT
* *
95138123 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGAGAGCC
* * *
95138171 AGTGTAAGACCATGTTTGGAACATGACATCGGCAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT-ATGAGAGCC
* * * * * *
95138219 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTAATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGAGAGCC
* * *
95138267 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAACGATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGAGAGCC
* * *
95138315 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT-ATGAGAGCC
* * * * * * *
95138363 AGTGTAAGACCATATTTGGGACAT-GCATCGGTATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGAGAGCC
95138410 AGTGTAAG
1 AGTGTAAG
95138418 CCAGTGTAAG
Statistics
Matches: 208, Mismatches: 35, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
47 25 0.12
48 182 0.88
49 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGAGAGCC
Found at i:95138372 original size:144 final size:143
Alignment explanation
Indices: 95138112--95138417 Score: 495
Period size: 144 Copynumber: 2.1 Consensus size: 143
95138102 CAATTGGGTG
* *
95138112 ATATGTGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTA
1 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTGTA
* *
95138177 AGACCATGTTTGGAACATGACATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGACA
66 AGACCATGTTTGGAACATGACATCGACAATGTAATGAGAGCCAGTGTAAGACCATATCTGGGACA
95138242 TGGCATCGACATTA
131 T-GCATCGACATTA
* *
95138256 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAACGATATGAGAGCTAGTGTA
1 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTGTA
* *
95138321 AGACCATGTTTGGAACATGGCATCGACAATGTAATGAGAGCCAGTGTAAGACCATATTTGGGACA
66 AGACCATGTTTGGAACATGACATCGACAATGTAATGAGAGCCAGTGTAAGACCATATCTGGGACA
** *
95138386 TGCATCGGTATTG
131 TGCATCGACATTA
*
95138399 ATATGTGCGCTAGTGTAAG
1 ATATGTGTGCTAGTGTAAG
95138418 CCAGTGTAAG
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
143 27 0.18
144 123 0.82
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (143 bp):
ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTGTA
AGACCATGTTTGGAACATGACATCGACAATGTAATGAGAGCCAGTGTAAGACCATATCTGGGACA
TGCATCGACATTA
Found at i:95143956 original size:40 final size:40
Alignment explanation
Indices: 95143896--95144045 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 40
95143886 TTGGAATGAT
* * * * * *
95143896 ATCCGGGCTAAGTCCAGAAGGCAATTATGCTAGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTAA
* * *
95143936 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATTAA
* **
95143976 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTAA
* * *
95144016 ATCCGGGTTAAGACCTGAAGGCAATCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
95144046 GAATCACTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTAA
Found at i:95144028 original size:80 final size:80
Alignment explanation
Indices: 95143894--95144047 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
95143884 CATTGGAATG
* * ** *
95143894 ATATCCGGGCTAAGTCCAGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCAGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
95143959 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * * * *
95143974 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCTGAAGGCA
1 ATATCCGGGCTAAGACCAGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
95144039 ATCGTGCGA
66 ATCGTGCGA
95144048 ATCACTATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCAGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:95144062 original size:40 final size:40
Alignment explanation
Indices: 95143938--95144075 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
95143928 GTAATTACAT
* ** *
95143938 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAATTACTATAA
* *
95143978 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCA-AA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAA-TTACTATAA
* * * *
95144017 TCCGGGTTAAGACCTGAAGGCAATCGTGCGAATCACTATAA
1 -CCGGGCTAAGACCCGAAGGCATTCGTGCGAATTACTATAA
* *
95144058 CCGGGCTAGGTCCCGAAG
1 CCGGGCTAAGACCCGAAG
95144076 ACAATCGAGC
Statistics
Matches: 78, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
39 2 0.03
40 72 0.92
41 4 0.05
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAATTACTATAA
Found at i:95150479 original size:48 final size:48
Alignment explanation
Indices: 95150421--95150883 Score: 540
Period size: 48 Copynumber: 9.6 Consensus size: 48
95150411 TATGTGTGCT
* *
95150421 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCATGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATGAGAGCC
* * * * * *
95150469 AGTGTAAGACCATGTTTGGGACATGGCATTGGC-ATTAATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGATATGAGAGCC
* * *
95150517 AGTGTAAGACCATGTTTGAGACATGGCATCGGCTACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATGAGAGCC
* * ** *
95150565 AGTGTAAGACCATGTTTGGAACATGGCATCAACAAT-ATAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAT-ATGAGAGCC
* * *
95150613 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGATATGAGAGCC
* * *
95150661 AGTGGAAGACCATGTCTGGGACATGGCATCGTCTACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATGAGAGCC
* * * *
95150709 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAT-ATGAGAGCC
* * * *
95150757 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGATACGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGATATGAGAGCC
* *
95150805 AGTGGAAGACCATGTCTGGGACATGGCATCGGCTACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATGAGAGCC
* *
95150853 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
95150884 ATAATTCACC
Statistics
Matches: 347, Mismatches: 58, Indels: 20
0.82 0.14 0.05
Matches are distributed among these distances:
47 6 0.02
48 333 0.96
49 8 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATGAGAGCC
Found at i:95150670 original size:144 final size:144
Alignment explanation
Indices: 95150421--95150882 Score: 757
Period size: 144 Copynumber: 3.2 Consensus size: 144
95150411 TATGTGTGCT
* * *
95150421 AGTGTAAGACCATGTCT-GAGACATGGCATCGGCCATGAT-ATGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTTTGGA-ACATGGCATCAGCAAT-ATAATGAGAGCCAGTGTAAGACCATGT
* * * * * * * *
95150484 TTGGGACATGGCATTGGCATTAATATGTGTGCTAGTGTAAGACCATGTTTGAGACATGGCATCGG
64 CTGGGACATGGCATCGGTATTGATATGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGG
95150549 CTACGATATGAGAGCC
129 CTACGATATGAGAGCC
*
95150565 AGTGTAAGACCATGTTTGGAACATGGCATCAACAATATAATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCCAGTGTAAGACCATGTCT
*
95150630 GGGACATGGCATCGGTATTGATATGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGTCT
66 GGGACATGGCATCGGTATTGATATGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGGCT
95150695 ACGATATGAGAGCC
131 ACGATATGAGAGCC
*
95150709 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTAATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCCAGTGTAAGACCATGTCT
*
95150774 GGGACATGGCATCGGTATTGATACGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGGCT
66 GGGACATGGCATCGGTATTGATATGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGGCT
95150839 ACGATATGAGAGCC
131 ACGATATGAGAGCC
95150853 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
95150883 GATAATTCAC
Statistics
Matches: 299, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
143 2 0.01
144 295 0.99
145 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (144 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGTATTGATATGTGCGCTAGTGGAAGACCATGTCTGGGACATGGCATCGGCT
ACGATATGAGAGCC
Found at i:95162348 original size:12 final size:12
Alignment explanation
Indices: 95162331--95162358 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
95162321 ATTTTCGTCC
95162331 ACACAGGCAGAG
1 ACACAGGCAGAG
95162343 ACACAGGCAGAG
1 ACACAGGCAGAG
95162355 ACAC
1 ACAC
95162359 GGGAATGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.29, G:0.29, T:0.00
Consensus pattern (12 bp):
ACACAGGCAGAG
Found at i:95164742 original size:20 final size:20
Alignment explanation
Indices: 95164717--95164766 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
95164707 TCGAGATTTC
** *
95164717 GTATCGATATGTTTGCTCGA
1 GTATCGATACCTTTGCTCAA
95164737 GTATCGATACCTTTGCTCAA
1 GTATCGATACCTTTGCTCAA
95164757 GTATCGATAC
1 GTATCGATAC
95164767 TCGGGGTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (20 bp):
GTATCGATACCTTTGCTCAA
Found at i:95168868 original size:20 final size:20
Alignment explanation
Indices: 95168843--95168890 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
95168833 TGCAATTTGG
95168843 TATCGATACCATTT-TAAAAT
1 TATCGATA-CATTTATAAAAT
* *
95168863 TATCGACACTTTTATAAAAT
1 TATCGATACATTTATAAAAT
*
95168883 TATTGATA
1 TATCGATA
95168891 TTCGTCTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTATAAAAT
Found at i:95170482 original size:29 final size:29
Alignment explanation
Indices: 95170440--95170497 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
95170430 TTATTTCTAG
*
95170440 GATTGCATGCAACTATAAATTGAAAAATA
1 GATTGCATGCAACTATAAACTGAAAAATA
* *
95170469 GATTGCATGGAACTGTAAACTGAAAAATA
1 GATTGCATGCAACTATAAACTGAAAAATA
95170498 TATAGGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.26
Consensus pattern (29 bp):
GATTGCATGCAACTATAAACTGAAAAATA
Found at i:95173215 original size:93 final size:93
Alignment explanation
Indices: 95173103--95173274 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95173093 CGCCCATAAG
* *
95173103 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95173168 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95173196 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95173261 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95173275 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95173271 original size:46 final size:46
Alignment explanation
Indices: 95173096--95173271 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95173086 TGTAACCCGC
* * *
95173096 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95173142 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95173192 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95173235 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95173272 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95180793 original size:93 final size:93
Alignment explanation
Indices: 95180681--95180852 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95180671 CGCCCATAAG
* *
95180681 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95180746 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95180774 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95180839 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95180853 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95180849 original size:46 final size:46
Alignment explanation
Indices: 95180674--95180849 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95180664 TGTAACCCGC
* * *
95180674 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95180720 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95180770 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95180813 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95180850 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95184405 original size:20 final size:20
Alignment explanation
Indices: 95184329--95184405 Score: 64
Period size: 20 Copynumber: 3.6 Consensus size: 20
95184319 TTAAATTAAT
*
95184329 TTTTTAAATCAAGTTAAAATG
1 TTTTTAAA-CAAGTTAAATTG
* * * *
95184350 ATTTCAATCAAGTTAGAACTTT
1 TTTTTAAACAAGTTA-AA-TTG
*
95184372 TTTTTCAAATAAGTTAAATTG
1 TTTTT-AAACAAGTTAAATTG
95184393 TTTTTAAACAAGT
1 TTTTTAAACAAGT
95184406 CAGCATAGCT
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
20 14 0.33
21 14 0.33
22 6 0.14
23 8 0.19
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (20 bp):
TTTTTAAACAAGTTAAATTG
Found at i:95191040 original size:48 final size:48
Alignment explanation
Indices: 95190930--95191144 Score: 210
Period size: 46 Copynumber: 4.6 Consensus size: 48
95190920 TGATATGTGT
* * * *
95190930 GCTAGAGTAGGACATGTCTAGGACATGCATCGG-C-C-ACAT-TACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAC-A-A
* *
95190976 G-TCAGTGTAAAACATGTCTGGGACATGCATCGACCTCGAGATATACAA
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * ** *
95191024 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
95191070 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * *
95191118 GTTAGTGCAAGACCTATTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
95191145 GCGTCAGCTT
Statistics
Matches: 138, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.48
47 3 0.02
48 60 0.43
49 5 0.04
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:95191085 original size:94 final size:92
Alignment explanation
Indices: 95190930--95191144 Score: 272
Period size: 94 Copynumber: 2.3 Consensus size: 92
95190920 TGATATGTGT
* * *
95190930 GCTAGAGTAGGACATGTCTAGGACATGCATCGGCCACATTACGAGAGTCAGTGTAAAACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGAGAGTCAGTGTAAAACATGTCT
95190995 GGGACATGCATCGACCTCGAGATATACAA
64 GGGACATGCATCGACCTCGAGATATACAA
*
95191024 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATTGAGACGAGAG-CTAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATT---ACGAGAGTC-AGTGTAAAACATGT
*
95191087 CTGGGACATGCATCGGCCTCGAGATATACAA
62 CTGGGACATGCATCGACCTCGAGATATACAA
* * * * *
95191118 GTTAGTGCAAGACCTATTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
95191145 GCGTCAGCTT
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
91 4 0.04
93 1 0.01
94 102 0.95
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGAGAGTCAGTGTAAAACATGTCTGG
GACATGCATCGACCTCGAGATATACAA
Found at i:95191786 original size:21 final size:21
Alignment explanation
Indices: 95191761--95191816 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
95191751 ATCAAAATGG
*
95191761 CCACACGGGCGTGTCACATTT
1 CCACACGAGCGTGTCACATTT
* *
95191782 CCACACGAGCGTGTCGCCTTT
1 CCACACGAGCGTGTCACATTT
95191803 CCACACGAGCGTGT
1 CCACACGAGCGTGT
95191817 GCCCCTGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.36, G:0.25, T:0.21
Consensus pattern (21 bp):
CCACACGAGCGTGTCACATTT
Found at i:95195952 original size:40 final size:40
Alignment explanation
Indices: 95195907--95196074 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
95195897 CGGAATATAA
*
95195907 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
95195947 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
95195987 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
95196027 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
95196067 CCGGATAT
1 CCGGATAT
95196075 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95196057 original size:80 final size:80
Alignment explanation
Indices: 95195923--95196074 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
95195913 ATAAGCATGT
* *
95195923 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
95195988 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
95196003 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
95196066 CCCGGATAT
64 CCCGGATAT
95196075 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:95203972 original size:40 final size:40
Alignment explanation
Indices: 95203927--95204056 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
95203917 CGGAATATAA
95203927 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
95203967 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
95204007 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
95204047 CCGGATATAA
1 CCGGATATAA
95204057 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:95204071 original size:40 final size:40
Alignment explanation
Indices: 95203943--95204094 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
95203933 ATAAGCATGT
* * *
95203943 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
95203983 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
95204023 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
95204063 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
95204095 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:95204077 original size:80 final size:80
Alignment explanation
Indices: 95203943--95204094 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
95203933 ATAAGCATGT
* *
95203943 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
95204008 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
95204023 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
95204086 CCCGGATAT
64 CCCGGATAT
95204095 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:95205980 original size:20 final size:22
Alignment explanation
Indices: 95205951--95205991 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
95205941 TAAAACCCTA
95205951 TTTTTCCTTTCTTT-TTTCCCC
1 TTTTTCCTTTCTTTCTTTCCCC
95205972 TTTTT-CTTTCTTTCTTTCCC
1 TTTTTCCTTTCTTTCTTTCCC
95205992 TGTTCTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTTTCCTTTCTTTCTTTCCCC
Found at i:95206066 original size:13 final size:13
Alignment explanation
Indices: 95206048--95206085 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
95206038 TTACCTTACT
95206048 TTATATTATTATA
1 TTATATTATTATA
*
95206061 TTATATTTTTA-A
1 TTATATTATTATA
95206073 TTATAATTATTAT
1 TTAT-ATTATTAT
95206086 TTCTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:95221524 original size:18 final size:18
Alignment explanation
Indices: 95221501--95221553 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
95221491 ACAGGGTAAA
* **
95221501 GATGATGATGATGACTCT
1 GATGATGATGAAGACGAT
*
95221519 GATGATGATCAAGACGAT
1 GATGATGATGAAGACGAT
*
95221537 GATGATGATGAGGACGA
1 GATGATGATGAAGACGA
95221554 CGACGACGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (18 bp):
GATGATGATGAAGACGAT
Found at i:95241120 original size:18 final size:19
Alignment explanation
Indices: 95241080--95241120 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
95241070 TTTATAAATA
**
95241080 AAATATAATTATATTTTAT
1 AAATATAATTATATGATAT
95241099 -AATATAATTA-ATGATAT
1 AAATATAATTATATGATAT
95241116 AAATA
1 AAATA
95241121 AAAATGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AAATATAATTATATGATAT
Found at i:95247999 original size:31 final size:31
Alignment explanation
Indices: 95247964--95248022 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
95247954 AGGTCCATTT
95247964 AACTATTCGAAAGTTTTCATTTAAGCCAATG
1 AACTATTCGAAAGTTTTCATTTAAGCCAATG
*
95247995 AACTATTCGAAAGTTTTTATTTAAGCCA
1 AACTATTCGAAAGTTTTCATTTAAGCCA
95248023 TTGGGTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (31 bp):
AACTATTCGAAAGTTTTCATTTAAGCCAATG
Found at i:95249338 original size:23 final size:23
Alignment explanation
Indices: 95249297--95249360 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
95249287 AATACACTAA
** *
95249297 AAAAATATTTATATTAAAAACAC-
1 AAAAATAAATATA-TAAAAATACT
*
95249320 AAATATAAATATATAAAAATACT
1 AAAAATAAATATATAAAAATACT
95249343 AAAAATAAATATAATAAA
1 AAAAATAAATAT-ATAAA
95249361 TGTTTTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 8 0.24
23 21 0.62
24 5 0.15
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAAATAAATATATAAAAATACT
Found at i:95253963 original size:19 final size:19
Alignment explanation
Indices: 95253939--95253975 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
95253929 GTATCTTTCT
95253939 AGAATTTAACGAGAGTTCC
1 AGAATTTAACGAGAGTTCC
95253958 AGAATTTAACGAGAGTTC
1 AGAATTTAACGAGAGTTC
95253976 TATCACCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (19 bp):
AGAATTTAACGAGAGTTCC
Found at i:95256510 original size:21 final size:20
Alignment explanation
Indices: 95256481--95256530 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
95256471 TAAGAAAAGG
*
95256481 AATGG-AATGGTCAGTGAGTT
1 AATGGAAATGGTCA-TGACTT
*
95256501 AATGGAAATGTTCATGACTT
1 AATGGAAATGGTCATGACTT
*
95256521 TATGGAAATG
1 AATGGAAATG
95256531 TTGATGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (20 bp):
AATGGAAATGGTCATGACTT
Found at i:95259611 original size:46 final size:46
Alignment explanation
Indices: 95259553--95259724 Score: 249
Period size: 46 Copynumber: 3.7 Consensus size: 46
95259543 TGATACGAGG
95259553 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
*
95259599 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
* *
95259645 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTAAGAGATG-ATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA-A
* *
95259691 GTTAGTGTAAGACCATGGCTGGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
95259725 ACTTGAGCTA
Statistics
Matches: 116, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
45 3 0.03
46 94 0.81
47 13 0.11
48 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
Found at i:95259697 original size:92 final size:94
Alignment explanation
Indices: 95259501--95259724 Score: 260
Period size: 92 Copynumber: 2.4 Consensus size: 94
95259491 GGTCACTCGT
* * * * ** * * *
95259501 GTAAGCCAGTGTAAGACCATGTCCAGGACATGGCATTGGAATTGATACG-AGGGCTAGTGTAAGA
1 GTAAGCTAGTGTAAGACCATGGCTAGGACATGGCATCGGCCTCGAGACGTA-AGCTAGTGTAAGA
*
95259565 CATGTCTGGGACATGCATCGGCCTCGAGAC
65 CATGTCTGGGACATGCATCGGCCTAGAGAC
*
95259595 GTAAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGTAAGCTAGTGTAAGAC
1 GTAAGCTAGTGTAAGACCATGGCTAGGACATGGCATCGGCCTCGAGACGTAAGCTAGTGTAAGAC
*
95259658 ATGTCTGGGACATGCATCGG-CTAAGAGAT
66 ATGTCTGGGACATGCATCGGCCT-AGAGAC
* *
95259687 G-ATAGTTAGTGTAAGACCATGGCTGGGACATGGCATCG
1 GTA-AGCTAGTGTAAGACCATGGCTAGGACATGGCATCG
95259725 ACTTGAGCTA
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
91 3 0.03
92 62 0.55
93 26 0.23
94 21 0.19
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (94 bp):
GTAAGCTAGTGTAAGACCATGGCTAGGACATGGCATCGGCCTCGAGACGTAAGCTAGTGTAAGAC
ATGTCTGGGACATGCATCGGCCTAGAGAC
Found at i:95268371 original size:21 final size:21
Alignment explanation
Indices: 95268347--95268411 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
95268337 TGCCTTTTCC
95268347 AGTCTACTTTTATTGCCATCT
1 AGTCTACTTTTATTGCCATCT
*
95268368 AGTCT--TTTCT-TT-CC-TTT
1 AGTCTACTTT-TATTGCCATCT
*
95268385 CAGTCTACTTTTATAGCCATCT
1 -AGTCTACTTTTATTGCCATCT
95268407 AGTCT
1 AGTCT
95268412 TTTTTTTCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
17 2 0.06
18 7 0.21
19 6 0.18
20 5 0.15
21 12 0.35
22 2 0.06
ACGTcount: A:0.17, C:0.25, G:0.09, T:0.49
Consensus pattern (21 bp):
AGTCTACTTTTATTGCCATCT
Found at i:95268389 original size:39 final size:39
Alignment explanation
Indices: 95268346--95268424 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
95268336 ATGCCTTTTC
*
95268346 CAGTCTACTTTTATTGCCATCTAGTCTTTTCTTTCCTTT
1 CAGTCTACTTTTATAGCCATCTAGTCTTTTCTTTCCTTT
*
95268385 CAGTCTACTTTTATAGCCATCTAGTCTTTTTTTTCCTTT
1 CAGTCTACTTTTATAGCCATCTAGTCTTTTCTTTCCTTT
95268424 C
1 C
95268425 TTGATGCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.14, C:0.25, G:0.08, T:0.53
Consensus pattern (39 bp):
CAGTCTACTTTTATAGCCATCTAGTCTTTTCTTTCCTTT
Found at i:95273820 original size:18 final size:18
Alignment explanation
Indices: 95273797--95273852 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
95273787 CCACCACCAA
95273797 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
95273815 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
*
95273827 CTCCATTAGCCACACTTG
1 CTCCACTAGCCACACTTG
95273845 CTCCACTA
1 CTCCACTA
95273853 CCTACTCCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
12 6 0.21
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 14 0.50
ACGTcount: A:0.25, C:0.46, G:0.07, T:0.21
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:95273823 original size:30 final size:30
Alignment explanation
Indices: 95273787--95273885 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
95273777 CTAGCCTTTG
95273787 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
95273817 CCACCACCAACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
95273847 CCACTACCTACTCCACTAGCCACACTTACT
1 CCACCACCAACTCCACTAGCCACACTTGCT
95273877 CCACCACCA
1 CCACCACCA
95273886 TTTGTACCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.27, C:0.49, G:0.05, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:95274312 original size:29 final size:29
Alignment explanation
Indices: 95274279--95274374 Score: 174
Period size: 29 Copynumber: 3.3 Consensus size: 29
95274269 CGGTGGCACC
95274279 GACGGTGGCCGGTGGCGGTCCGGTGACCG
1 GACGGTGGCCGGTGGCGGTCCGGTGACCG
*
95274308 GACGGTTGCCGGTGGCGGTCCGGTGACCG
1 GACGGTGGCCGGTGGCGGTCCGGTGACCG
*
95274337 GACGGTTGCCGGTGGCGGTCCGGTGACCG
1 GACGGTGGCCGGTGGCGGTCCGGTGACCG
95274366 GACGGTGGC
1 GACGGTGGC
95274375 TGGCCTTGTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.07, C:0.27, G:0.50, T:0.16
Consensus pattern (29 bp):
GACGGTGGCCGGTGGCGGTCCGGTGACCG
Found at i:95274319 original size:18 final size:18
Alignment explanation
Indices: 95274298--95274350 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
95274288 CGGTGGCGGT
95274298 CCGGTGACCGGACGGTTG
1 CCGGTGACCGGACGGTTG
95274316 CCGGT----GG-CGG-T-
1 CCGGTGACCGGACGGTTG
95274327 CCGGTGACCGGACGGTTG
1 CCGGTGACCGGACGGTTG
95274345 CCGGTG
1 CCGGTG
95274351 GCGGTCCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
11 5 0.18
12 1 0.04
13 3 0.11
14 2 0.07
15 2 0.07
16 3 0.11
17 1 0.04
18 11 0.39
ACGTcount: A:0.08, C:0.28, G:0.47, T:0.17
Consensus pattern (18 bp):
CCGGTGACCGGACGGTTG
Found at i:95274456 original size:25 final size:25
Alignment explanation
Indices: 95274419--95274561 Score: 68
Period size: 25 Copynumber: 5.7 Consensus size: 25
95274409 TCTCTTTTTT
95274419 TATTAT-TATTATATTTTTAATATTA
1 TATTATATA-TATATTTTTAATATTA
*
95274444 TATTATATATATATTCTTT--TAATA
1 TATTATATATATATT-TTTAATATTA
** * *
95274468 TA-T-TAGGTATATTCTAAAT-TCTA
1 TATTATATATATATTTTTAATAT-TA
* *
95274491 TATTACGTATATATA-TATT-ATACTA
1 TATTA--TATATATATTTTTAATATTA
* * *
95274516 TTTTATGTATATATCTTTAATACTATA
1 TATTATATATATATTTTTAATA-T-TA
95274543 TTATTATATATATATTTTT
1 -TATTATATATATATTTTT
95274562 TCTACATGTT
Statistics
Matches: 84, Mismatches: 19, Indels: 27
0.65 0.15 0.21
Matches are distributed among these distances:
21 1 0.01
22 8 0.10
23 13 0.15
24 9 0.11
25 23 0.27
26 7 0.08
27 8 0.10
28 15 0.18
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.57
Consensus pattern (25 bp):
TATTATATATATATTTTTAATATTA
Found at i:95274480 original size:47 final size:48
Alignment explanation
Indices: 95274428--95274555 Score: 118
Period size: 47 Copynumber: 2.6 Consensus size: 48
95274418 TTATTATTAT
* *
95274428 TATATTTTTAATATTATATTA-TATATATATTCTTTTAATATATTAGG
1 TATATTTTTAATATTATATTACTATATATATTATTATAATATATTAGG
* * * * *
95274475 TATATTCTAAAT-TCTATATTACGTATATATA-TATTATACTATTTTATG
1 TATATTTTTAATAT-TATATTAC-TATATATATTATTATAATATATTAGG
* *
95274523 TATATATCTTTAATACTATATTATTATATATAT
1 TATAT-T-TTTAATATTATATTACTATATATAT
95274556 ATTTTTTCTA
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
46 1 0.02
47 17 0.27
48 17 0.27
49 17 0.27
50 11 0.17
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (48 bp):
TATATTTTTAATATTATATTACTATATATATTATTATAATATATTAGG
Done.