Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 313 of 378
Found at i:95274556 original size:14 final size:13
Alignment explanation
Indices: 95274504--95274560 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
95274494 TACGTATATA
95274504 TATATTATACTATTT
1 TATA-TATA-TATTT
*
95274519 TATGTATATATCTT
1 TATATATATAT-TT
95274533 TA-ATACTATATTAT
1 TATATA-TATATT-T
95274547 TATATATATATTT
1 TATATATATATTT
95274560 T
1 T
95274561 TTCTACATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
13 8 0.22
14 22 0.61
15 6 0.17
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (13 bp):
TATATATATATTT
Found at i:95274600 original size:27 final size:27
Alignment explanation
Indices: 95274517--95274608 Score: 89
Period size: 28 Copynumber: 3.3 Consensus size: 27
95274507 ATTATACTAT
95274517 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATAC-ATATTA
* ** *
95274546 -TTATATATATATTTTTTCTACATGTTA
1 TTTATGTATATA-TTTTAATACATATTA
95274573 TCTTATGTATATATTTTAAT-CATATTA
1 T-TTATGTATATATTTTAATACATATTA
*
95274600 TGTATGTAT
1 TTTATGTAT
95274609 TTTTTACACT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
26 7 0.14
27 12 0.24
28 21 0.41
29 11 0.22
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (27 bp):
TTTATGTATATATTTTAATACATATTA
Found at i:95274728 original size:25 final size:24
Alignment explanation
Indices: 95274700--95274755 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
95274690 GTTATATTTT
*
95274700 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
95274725 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
95274748 CACTATTA
1 CACTATTA
95274756 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:95281189 original size:24 final size:24
Alignment explanation
Indices: 95281157--95281205 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
95281147 TGCAAGGGCT
95281157 ACATAATACCGAATGTGCTTATCG
1 ACATAATACCGAATGTGCTTATCG
95281181 ACATAATACCGAATGTGCTTATCG
1 ACATAATACCGAATGTGCTTATCG
95281205 A
1 A
95281206 TAATGGGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (24 bp):
ACATAATACCGAATGTGCTTATCG
Found at i:95285892 original size:17 final size:17
Alignment explanation
Indices: 95285872--95285904 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
95285862 AGGGCATCTT
95285872 AAAA-AAAAAGAGAAAAG
1 AAAAGAAAAA-AGAAAAG
95285889 AAAAGAAAAAAGAAAA
1 AAAAGAAAAAAGAAAA
95285905 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAGAAAAG
Found at i:95286865 original size:90 final size:87
Alignment explanation
Indices: 95286770--95286945 Score: 228
Period size: 90 Copynumber: 2.0 Consensus size: 87
95286760 TATCTTTCAA
* * * * *
95286770 AAAAATTAACTCATATTGTGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATT
*
95286835 TCCAT-TTTTTCAATTTATGCTTTTC
64 T-C-TGGTTTTCAATTTATGCTTTTC
* *
95286860 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCACGCCGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTC
*
95286925 TGGTTTTCAATTTCTGCTTTT
66 TGGTTTTCAATTTATGCTTTT
95286946 AATTTCTGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
86 1 0.01
87 18 0.24
88 20 0.26
90 37 0.49
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTC
TGGTTTTCAATTTATGCTTTTC
Found at i:95286936 original size:14 final size:14
Alignment explanation
Indices: 95286914--95286961 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
95286904 CGCCGAGGTA
* *
95286914 TTTTTAATTTCTGG
1 TTTTCAATTTCTGC
95286928 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
*
95286942 TTTT-AATTTCTGT
1 TTTTCAATTTCTGC
95286955 TTTTCAA
1 TTTTCAA
95286962 AAATCAACTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 12 0.40
14 18 0.60
ACGTcount: A:0.17, C:0.12, G:0.08, T:0.62
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:95286958 original size:13 final size:13
Alignment explanation
Indices: 95286914--95286958 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
95286904 CGCCGAGGTA
95286914 TTTTTAATTTCTGG
1 TTTTTAATTTCT-G
*
95286928 TTTTCAATTTCTG
1 TTTTTAATTTCTG
*
95286941 CTTTTAATTTCTG
1 TTTTTAATTTCTG
95286954 TTTTT
1 TTTTT
95286959 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:95287023 original size:100 final size:96
Alignment explanation
Indices: 95286841--95287211 Score: 406
Period size: 100 Copynumber: 3.9 Consensus size: 96
95286831 AATTTCCATT
* * *
95286841 TTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCACG
1 TTTT-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
95286906 CCGAGGTATTTTTAATTTCTGGTTTTCAATTTCTGC
65 CTGAGGTATTTTCAATTTCT--TTTTCAATTT-T-C
* *
95286942 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
95287007 TGAGGTATTTTCAATTTCTATTTTTCAATTTT-
66 TGAGGTATTTTCAATTTC--TTTTTCAATTTTC
* *
95287039 TTCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TT--TT--AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
95287102 ACGCTGAGGTATTTTCAA-----TTTTC--GTTT-
62 ACGCTGAGGTATTTTCAATTTCTTTTTCAATTTTC
* * * *
95287129 TTTTAATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACAA
1 TTTTAATTTATGCTTT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
95287193 GCTGAGGTAATTTCAATTT
64 GCTGAGGTATTTTCAATTT
95287212 TTGTTTGTCA
Statistics
Matches: 240, Mismatches: 17, Indels: 35
0.82 0.06 0.12
Matches are distributed among these distances:
85 3 0.01
86 7 0.03
88 2 0.01
89 55 0.23
90 5 0.02
92 5 0.02
97 2 0.01
99 62 0.26
100 82 0.34
101 16 0.07
102 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (96 bp):
TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTTCTTTTTCAATTTTC
Found at i:95287324 original size:148 final size:148
Alignment explanation
Indices: 95287128--95288085 Score: 1276
Period size: 148 Copynumber: 6.5 Consensus size: 148
95287118 AATTTTCGTT
* * * * *
95287128 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* * *
95287192 AGCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
95287257 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* * *
95287275 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
95287340 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
95287405 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* * *
95287423 TTTTCAATTTCTGTCTTT-AAGAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGAC
1 TTTTCAATTTCTGTTTTTCAA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
* * * * *
95287487 ACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
65 ACGCTGAGGTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
95287552 ACCTCAAG--ACGCTGAGGTA
128 GCCTCAAGACACGTTGAGGTA
* * * * * * * *
95287571 ATTTAAATTTTTGTTTGTC--AAAACTCGACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* * * * * *
95287634 CGTTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAG
66 CGCTGAGGTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
95287699 CCTCACGACACGCTGAGGTA
129 CCTCAAGACACGTTGAGGTA
* * * *
95287719 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* * * * ***
95287782 TGTTGAGGTATTTTCAATTTCTTTCTTTAAAAAAAAT-AAGCTCATATTGCGAGAGGTGAGTTGA
66 CGCTGAGGTAATTTCAA-TT-TTTGTTTGTCAAAAATCAA-CTCATATTGCGAGAGGTGAGTTGA
*
95287846 ACCTCAAGACACGTTGAGGTA
128 GCCTCAAGACACGTTGAGGTA
*
95287867 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
95287930 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
95287995 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* *
95288013 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
95288076 ACGCTGAGGT
65 ACGCTGAGGT
95288086 GTTTTCCATT
Statistics
Matches: 731, Mismatches: 66, Indels: 28
0.89 0.08 0.03
Matches are distributed among these distances:
146 181 0.25
147 74 0.10
148 391 0.53
149 2 0.00
150 83 0.11
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (148 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAAGACACGTTGAGGTA
Found at i:95287582 original size:221 final size:219
Alignment explanation
Indices: 95287148--95288107 Score: 1227
Period size: 221 Copynumber: 4.3 Consensus size: 219
95287138 ATGTTTCTAA
* * * * * *
95287148 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACAAGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * * * *
95287213 TGTTTGTC--AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTAA
* * *
95287276 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
131 TTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGAC
*
95287341 GCTGAGGTAATTTCAATTTTTGTTTGTC
192 GCTGAGGTAATTTAAATTTTTGTTTGTC
*
95287369 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * *
95287434 TGTCTTT-AAGAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGACACGTTGAGGTA
66 TGTTTTTCAA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTA
* * * *
95287498 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
130 ATTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
95287563 CTGAGGTAATTTAAATTTTTGTTTGTC
193 CTGAGGTAATTTAAATTTTTGTTTGTC
* * * *
95287590 AAAACTCGACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * *
95287655 TATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCACGACACGCTGAGGTAA
66 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTAA
* *
95287720 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGT
131 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC--GC
* * * ***
95287785 TGAGGTATTTTCAATTTCTTTCTTTAAA
194 TGAGGTAATTT-AAATT-TTTGTTTGTC
95287813 AAAAAT-AAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAA-CTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
*
95287877 CTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTA
65 CTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTA
*
95287940 ATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
130 ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACG
* * * *
95288005 TTGAGGTATTTTCAATTTCTGTCTT-TC
193 CTGAGGTAATTTAAATTTTTGT-TTGTC
* * * *
95288032 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAAT
*
95288095 TTCTGTTCTTCAA
63 TTCTGTTTTTCAA
95288108 TTTCTGTGTT
Statistics
Matches: 665, Mismatches: 58, Indels: 33
0.88 0.08 0.04
Matches are distributed among these distances:
219 44 0.07
220 33 0.05
221 319 0.48
222 45 0.07
223 224 0.34
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (219 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTAA
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTG
AGGTAATTTAAATTTTTGTTTGTC
Found at i:95287605 original size:369 final size:368
Alignment explanation
Indices: 95287128--95288085 Score: 1668
Period size: 369 Copynumber: 2.6 Consensus size: 368
95287118 AATTTTCGTT
* * * * * *
95287128 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGAC-
95287192 AGCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCC
65 -GCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCC
95287257 TCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGT
129 TCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGT
95287322 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
194 GAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
* *
95287387 CGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAGAAAAATCA
258 CGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATAA
95287452 GCTCATATTGCGAGAGGTAAGTTGAACCTCAAGACACGTTGAGGTA
323 GCTCATATTGCGAGAGGTAAGTTGAACCTCAAGACACGTTGAGGTA
95287498 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
* *
95287563 CTGAGGTAATTTAAATTTTTGTTTGTCAAAACTCGACTCATATTGCAAGAGGTGAGTTGAGCCTC
66 CTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
*
95287628 AAGACACGTTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGA
131 AAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGA
95287693 GTTGAGCCTCACGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCG
196 GTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCG
* *
95287758 AGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTCTTTCTTTAAAAAAAATAAGC
260 AGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATAAGC
*
95287823 TCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
325 TCATATTGCGAGAGGTAAGTTGAACCTCAAGACACGTTGAGGTA
95287867 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
* *
95287932 CTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 CTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
* * *
95287997 AAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTG
131 AAGACACGTTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGATAGGTG
* *
95288062 AGTTGAACCTCA-AGACGCTGAGGT
195 AGTTGAGCCTCAGACACGCTGAGGT
95288086 GTTTTCCATT
Statistics
Matches: 561, Mismatches: 25, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
368 11 0.02
369 455 0.81
370 53 0.09
371 42 0.07
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (368 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACG
CTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
AAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGA
GTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATAAGCT
CATATTGCGAGAGGTAAGTTGAACCTCAAGACACGTTGAGGTA
Found at i:95288428 original size:92 final size:90
Alignment explanation
Indices: 95288212--95288521 Score: 378
Period size: 92 Copynumber: 3.4 Consensus size: 90
95288202 GTTTTTCCAA
* *
95288212 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG--ACACGCTGAGATATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
*
95288275 ACTTTTTTTTTTTCAATTTATGTTTGTC
66 A-TCTTTTTTTTT-AATTTATGTTTG-C
*
95288303 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAA
*
95288368 TTGATGTTTTTTTTTAATTTATGCTTTGC
64 TT-ATCTTTTTTTTTAATTTATG-TTTGC
* * ** *
95288397 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAA-A
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
* *** *
95288461 ATCTGTTTTACAAATTT-TGTTT-T
66 ATCTTTTTTTTTAATTTATGTTTGC
*
95288484 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
95288522 GACTCACGTG
Statistics
Matches: 195, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
87 36 0.18
88 3 0.02
89 2 0.01
90 12 0.06
92 58 0.30
93 40 0.21
94 9 0.05
95 34 0.17
96 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (90 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
ATCTTTTTTTTTAATTTATGTTTGC
Found at i:95288544 original size:87 final size:87
Alignment explanation
Indices: 95288035--95288557 Score: 352
Period size: 87 Copynumber: 5.9 Consensus size: 87
95288025 GTCTTTCAAA
* * * * * * * *
95288035 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A---AGACGCTGAGGTGTTTTCCATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTCAAAT
95288096 TCTGTTCTT-C-AATTTCTGTGTTT
66 TCTGTT-TTACAAATTT-TGT-TTT
* * * **
95288119 CAAAAAAATCAACTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTTG
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTCA
*
95288184 AATTCT-TTTT-CAAATATTGTTTTT
63 AATTCTGTTTTACAAATTTTG-TTTT
* ** *
95288208 CCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTC-A-GGACACGCTGAGATATTTTC
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTC
* * *
95288271 AATTACTTTTTTTTTTTC-AATTTATGTTTGT
62 AA--A--TTCTGTTTTACAAATTT-TGTTT-T
* * * *
95288302 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGTCACACGCCGAGGTATTTTC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA-CTCACATGCTGAGATATTTTC
* *** *
95288366 -AATTGATGTTTTTTTTTAATTTATGCTTTGC
62 AAATT-CTG--TTTTACAAATTT-TG-TTT-T
* ** * * *
95288397 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTCAAAT
95288462 TCTGTTTTACAAATTTTGTTTT
66 TCTGTTTTACAAATTTTGTTTT
* * * *
95288484 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTCAAAT
95288549 TCTGTTTTA
66 TCTGTTTTA
95288558 ATGTCTAGTA
Statistics
Matches: 360, Mismatches: 52, Indels: 48
0.78 0.11 0.10
Matches are distributed among these distances:
87 98 0.27
88 20 0.06
89 11 0.03
90 57 0.16
91 20 0.06
92 61 0.17
93 60 0.17
94 13 0.04
95 20 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGATATTTTCAAAT
TCTGTTTTACAAATTTTGTTTT
Found at i:95288585 original size:87 final size:87
Alignment explanation
Indices: 95288397--95288601 Score: 232
Period size: 87 Copynumber: 2.4 Consensus size: 87
95288387 TATGCTTTGC
* * **
95288397 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATACCGAGATATTTTCAAAA
* * *
95288462 TCTGTTTTACAAATTTTGTTTT
66 TCTGTTTTACAAATCTAGTATT
* * * * **
95288484 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATACCGAGATATTTTCAAAA
**
95288549 TCTGTTTTA-ATGTCTAGTATT
66 TCTGTTTTACAAATCTAGTATT
* * *
95288570 AAAGAGTCAATTCATATTGCGAGAAATGAGTT
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTT
95288602 AAGCTCAGGA
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 10 0.10
87 89 0.90
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATACCGAGATATTTTCAAAA
TCTGTTTTACAAATCTAGTATT
Found at i:95289779 original size:21 final size:23
Alignment explanation
Indices: 95289755--95289814 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
95289745 CTTTTTTTTG
95289755 TTATTAT-TATATT-TTTTAATA
1 TTATTATATATATTCTTTTAATA
95289776 TTATATATATATATTCTTTTAATA
1 TTAT-TATATATATTCTTTTAATA
**
95289800 -TATTAGGTATATTCT
1 TTATTATATATATTCT
95289815 AAATTCTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 4 0.12
22 13 0.38
23 9 0.26
24 8 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (23 bp):
TTATTATATATATTCTTTTAATA
Found at i:95289811 original size:26 final size:23
Alignment explanation
Indices: 95289755--95289800 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
95289745 CTTTTTTTTG
95289755 TTAT-TAT-TATATTTTTTAATA
1 TTATATATATATATTTTTTAATA
95289776 TTATATATATATATTCTTTTAATA
1 TTATATATATATATT-TTTTAATA
95289800 T
1 T
95289801 ATTAGGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.18
22 3 0.14
23 6 0.27
24 9 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTATATATATATATTTTTTAATA
Found at i:95289848 original size:25 final size:26
Alignment explanation
Indices: 95289820--95289890 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
95289810 ATTCTAAATT
*
95289820 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
95289845 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
95289870 CTATATTATTTATATATATAT
1 CTATATTATGTATATATATAT
95289891 ATTTTTCTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.92
26 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:95289893 original size:14 final size:14
Alignment explanation
Indices: 95289830--95289894 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
95289820 CTATATTACG
*
95289830 TATATATATAT-TA
1 TATATATTTATATA
*
95289843 TACTAT-TTTATGTA
1 TA-TATATTTATATA
*
95289857 TATATCTTTA-ATA
1 TATATATTTATATA
95289870 CTATATTATTTATATA
1 -TATA-TATTTATATA
95289886 TATATATTT
1 TATATATTT
95289895 TTCTACATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 11 0.26
14 20 0.47
15 9 0.21
16 3 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:95289960 original size:25 final size:24
Alignment explanation
Indices: 95289910--95289972 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
95289900 CATGTTATCT
*
95289910 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
95289936 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
95289961 TACATATTTTTT
1 TATGTATTTTTT
95289973 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:95290083 original size:23 final size:22
Alignment explanation
Indices: 95290042--95290087 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
95290032 TTCACTATTT
95290042 TATATATATACTTCAAACACTA
1 TATATATATACTTCAAACACTA
* *
95290064 TATATAGTATATTTCTAACACTA
1 TATATA-TATACTTCAAACACTA
95290087 T
1 T
95290088 TACTATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (22 bp):
TATATATATACTTCAAACACTA
Found at i:95292237 original size:16 final size:16
Alignment explanation
Indices: 95292216--95292246 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95292206 GCTAAGTATC
95292216 GGTTAGTCTGATAGTT
1 GGTTAGTCTGATAGTT
*
95292232 GGTTAGTCTGGTAGT
1 GGTTAGTCTGATAGT
95292247 CATCTGTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.35, T:0.42
Consensus pattern (16 bp):
GGTTAGTCTGATAGTT
Found at i:95313917 original size:20 final size:20
Alignment explanation
Indices: 95313881--95313918 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95313871 AAATATATGT
95313881 TTATGGATGAAACTGAGTAA
1 TTATGGATGAAACTGAGTAA
*
95313901 TTATGTGATTAAA-TGAGT
1 TTATG-GATGAAACTGAGT
95313919 TGAATTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (20 bp):
TTATGGATGAAACTGAGTAA
Found at i:95321683 original size:41 final size:42
Alignment explanation
Indices: 95321603--95321715 Score: 99
Period size: 44 Copynumber: 2.7 Consensus size: 42
95321593 GCTATATAAA
* *
95321603 GCACTTAGTGTGCGA-ATTTGAATAGCTTCAGCTTTA-TG-TG
1 GCACTAAGTGTGCGATA-TCGAATAGCTTCAGCTTTAGTGATG
*
95321643 GCACTAAGTGTGCGATATCGAGATAGCTTC-GGTTTAATGTGATG
1 GCACTAAGTGTGCGATATCGA-ATAGCTTCAGCTTT-A-GTGATG
* * *
95321687 GCACTAAGCGTGCAATATCGTTATAGCTT
1 GCACTAAGTGTGCGATATCG-AATAGCTT
95321716 TGGCTAATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
40 21 0.35
41 10 0.17
43 2 0.03
44 27 0.45
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
GCACTAAGTGTGCGATATCGAATAGCTTCAGCTTTAGTGATG
Found at i:95324446 original size:70 final size:69
Alignment explanation
Indices: 95324318--95324531 Score: 250
Period size: 70 Copynumber: 3.1 Consensus size: 69
95324308 AAGATCATTT
* * * * * *
95324318 TTGTACCCAGCACTAGTCGAATGAGTTAACAAGTTATTGCGCCCAGCGTTAGTCGGATAACCGAT
1 TTGTGCCCAGAACTAGTCGAACGAGTCAACAAATTATTGCG-CCAGCGCTAGTCGGATAACCGAT
*
95324383 TATAG
65 GATAG
* * * *
95324388 TTGTGCCCA-ACATTAGTCGAACGGGTCAACAAATTATTGCGCCTAGCGCTAGTAGGATAATCGA
1 TTGTGCCCAGA-ACTAGTCGAACGAGTCAACAAATTATTGCGCC-AGCGCTAGTCGGATAACCGA
95324452 TGATAG
64 TGATAG
* * * *
95324458 TTGGGCCCAGAACTAGTCGAACGAGTCAACAAATTATTGCGTCCAACACTAGTCGGATAGCCGAT
1 TTGTGCCCAGAACTAGTCGAACGAGTCAACAAATTATTGCG-CCAGCGCTAGTCGGATAACCGAT
95324523 GATAG
65 GATAG
95324528 TTGT
1 TTGT
95324532 TCATCCACGA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
69 2 0.02
70 115 0.96
71 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (69 bp):
TTGTGCCCAGAACTAGTCGAACGAGTCAACAAATTATTGCGCCAGCGCTAGTCGGATAACCGATG
ATAG
Found at i:95324670 original size:36 final size:36
Alignment explanation
Indices: 95324585--95324663 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
95324575 CTTTTTATCT
*
95324585 AAAT-ACATATACTTCCATAAACTTCCATTCAATTG
1 AAATAACATATACATCCATAAACTTCCATTCAATTG
*
95324620 AAATAACATATACATCCATAAACTTTCATTCAATT-
1 AAATAACATATACATCCATAAACTTCCATTCAATTG
95324655 AAATTAACA
1 AAA-TAACA
95324664 ATTACATTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 7 0.17
36 33 0.82
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (36 bp):
AAATAACATATACATCCATAAACTTCCATTCAATTG
Found at i:95325571 original size:3 final size:3
Alignment explanation
Indices: 95325563--95325616 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
95325553 CACTATCTTA
95325563 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
95325611 ATT ATT
1 ATT ATT
95325617 TCTTCTTTTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:95330493 original size:35 final size:35
Alignment explanation
Indices: 95330369--95330729 Score: 407
Period size: 35 Copynumber: 10.5 Consensus size: 35
95330359 GGCAAAGTGC
*
95330369 GAAATGTAGGTATGGTA-TAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
** ** * * *
95330403 GAAATGTAGGTATGGCGTCGTCCATACTGAGCTAT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
*
95330438 G--A--TATGTA-GGTATTA-CCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * *
95330467 GAAACGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
95330502 GAAACGTAGGTATGGTATCATCCATA-CGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * *
95330536 GAAATGTAGGTATGGTATCATCCATACTGAGTTGA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
95330571 GAAATATAGGTATGGTATTATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * * *
95330606 GAAATATAGGTATGGTATCATCCATACTGAGTCGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* **
95330641 GAAATGTAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
*
95330676 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTAT-CCATACCGAGTTGT
95330711 GAAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
95330730 TCAATGAGGA
Statistics
Matches: 279, Mismatches: 39, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
29 12 0.04
30 3 0.01
31 6 0.02
33 6 0.02
34 55 0.20
35 197 0.71
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
Found at i:95330689 original size:105 final size:105
Alignment explanation
Indices: 95330369--95330728 Score: 477
Period size: 105 Copynumber: 3.5 Consensus size: 105
95330359 GGCAAAGTGC
** *
95330369 GAAATGTAGGTATGGTA-TAACCATACCGAGTTGTGAAATGTAGGTATGGCGTCGTCCATACTGA
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
* * *
95330433 G-C-T---ATGATATGTA-GGTATTA-CCATACCGAGTTGT
66 GTCGTGAAATG-TAGGTATGGTATTATCCATACTGAGTTGA
* * *
95330467 GAAACGTAGGTATGGTATTAACCATACCGAGATGTGAAACGTAGGTATGGTATCATCCATAC-GA
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
* *
95330531 GTTGTGAAATGTAGGTATGGTATCATCCATACTGAGTTGA
66 GTCGTGAAATGTAGGTATGGTATTATCCATACTGAGTTGA
* * * *
95330571 GAAATATAGGTATGGTATTATCCATACTGAGTTGTGAAATATAGGTATGGTATCATCCATACTGA
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
*
95330636 GTCGTGAAATGTAGGTATGGTATTATCCATACTGAGTTAA
66 GTCGTGAAATGTAGGTATGGTATTATCCATACTGAGTTGA
* **
95330676 GAAATGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTAT
95330729 TTCAATGAGG
Statistics
Matches: 226, Mismatches: 27, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
98 19 0.08
99 39 0.17
100 1 0.00
102 5 0.02
103 9 0.04
104 67 0.30
105 86 0.38
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (105 bp):
GAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
GTCGTGAAATGTAGGTATGGTATTATCCATACTGAGTTGA
Found at i:95335313 original size:35 final size:35
Alignment explanation
Indices: 95335219--95335586 Score: 400
Period size: 35 Copynumber: 10.5 Consensus size: 35
95335209 GGCAGAGTGC
* * *
95335219 GAAATGTAGGTATGGCA-TAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* * ** * *
95335253 GAAATGTAGGTATGATGTCGTCCATACTGAGCTAT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* * * *
95335288 GATACGTAGGTATGGTATTAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* * ** *
95335323 GAAACGTAGGTATGGTATTAACCATACCAAGATGT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* *
95335358 GAAACGTAGGTATGGTATCATCCATA-TCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACT-GAGTTGT
* * *
95335393 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
*
95335428 GAAATATAGGTATGGTATTATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* * * * *
95335463 GAAACGTAAGTATGGTATCATCCATACCGAGTAGT
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
* **
95335498 GAAATGTAGGTATGATATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
*
95335533 GAAATGTAGGTATGGCATT-TCCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATTAT-CCATACTGAGTTGT
95335568 GAAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
95335587 TCAATGAGAA
Statistics
Matches: 277, Mismatches: 53, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
34 15 0.05
35 262 0.95
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
Found at i:95335418 original size:105 final size:104
Alignment explanation
Indices: 95335219--95335585 Score: 448
Period size: 105 Copynumber: 3.5 Consensus size: 104
95335209 GGCAGAGTGC
* * * *
95335219 GAAATGTAGGTATGGCA-TAACCATACCGAGTTGTGAAATGTAGGTATGATGTCGTCCATACTGA
1 GAAATGTAGGTATGGCATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATAC-GA
* * * * * *
95335283 GCTATGATACGTAGGTATGGTATTAACCATACCGAGTTGT
65 GTTGTGAAATGTAGGTATGGTATTATCCATACCGAGTTGA
* * * *
95335323 GAAACGTAGGTATGGTATTAACCATACCAAGATGTGAAACGTAGGTATGGTATCATCCATATCGA
1 GAAATGTAGGTATGGCATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATA-CGA
*
95335388 GTTGTGAAATGTAGGTATGGTATCATCCATACCGAGTTGA
65 GTTGTGAAATGTAGGTATGGTATTATCCATACCGAGTTGA
* * * * *
95335428 GAAATATAGGTATGGTATTATCCATACTGAGTTGTGAAACGTAAGTATGGTATCATCCATACCGA
1 GAAATGTAGGTATGGCATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATA-CGA
* * * *
95335493 GTAGTGAAATGTAGGTATGATATTATCCATACTGAGTTAA
65 GTTGTGAAATGTAGGTATGGTATTATCCATACCGAGTTGA
** * *
95335533 GAAATGTAGGTATGGCATTTCCCATACTGAGTTGTGAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGCATTAACCATACCGAGTTGTGAAACGTAGGTATGGTAT
95335586 TTCAATGAGA
Statistics
Matches: 227, Mismatches: 34, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
104 15 0.07
105 211 0.93
106 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (104 bp):
GAAATGTAGGTATGGCATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACGAG
TTGTGAAATGTAGGTATGGTATTATCCATACCGAGTTGA
Found at i:95340055 original size:71 final size:70
Alignment explanation
Indices: 95339905--95340083 Score: 205
Period size: 71 Copynumber: 2.5 Consensus size: 70
95339895 GAATAAAGTT
* * * * **
95339905 TTGCGCCCAGCACTAGTAGAATAACCGATGATAGTTGTGCCCAACATTAGTCAAATGAGTCGAAA
1 TTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAACACTAGTCAAACAAGTCGAAA
95339970 AACTA
66 AACTA
* * * * *
95339975 TTACGCCCAGCGCTAGTCGGATAACTGATGATAGTGTGTGCCTAGCACTAGTCAAACAAGTTGAA
1 TTGCGCCCAGCGCTAGTCGGATAACCGATGATAGT-TGTGCCCAACACTAGTCAAACAAGTCGAA
*
95340040 AAATTA
65 AAACTA
* * * *
95340046 TTGCCCCCAGCGCTAGTCGGATGACCAACGATAGTTGT
1 TTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGT
95340084 TCATCATTGA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
70 33 0.37
71 57 0.63
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (70 bp):
TTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAACACTAGTCAAACAAGTCGAAA
AACTA
Found at i:95340223 original size:36 final size:36
Alignment explanation
Indices: 95340142--95340216 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 36
95340132 TTATCTAAAT
* *
95340142 ACATATACTTCCATAAACTTCTATTCAATTGAATTA
1 ACATATACATCCATAAACTTCTATTCAATTAAATTA
*
95340178 ACATATACATCCATAAACTT-TCGTTCAATTAAATTA
1 ACATATACATCCATAAACTTCT-ATTCAATTAAATTA
95340214 ACA
1 ACA
95340217 ATTACATTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.36
Consensus pattern (36 bp):
ACATATACATCCATAAACTTCTATTCAATTAAATTA
Found at i:95341056 original size:37 final size:38
Alignment explanation
Indices: 95341006--95341084 Score: 142
Period size: 37 Copynumber: 2.1 Consensus size: 38
95340996 CCAATTGGGG
95341006 CTTCAAAGGTAAGAAAAACAATGGCCGAATGAAGCTA-
1 CTTCAAAGGTAAGAAAAACAATGGCCGAATGAAGCTAT
*
95341043 CTTCAAAGGTAAGAAAAACAATGGTCGAATGAAGCTAT
1 CTTCAAAGGTAAGAAAAACAATGGCCGAATGAAGCTAT
95341081 CTTC
1 CTTC
95341085 CTTCTCAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 36 0.90
38 4 0.10
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (38 bp):
CTTCAAAGGTAAGAAAAACAATGGCCGAATGAAGCTAT
Found at i:95344880 original size:15 final size:16
Alignment explanation
Indices: 95344860--95344889 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95344850 TAGAAAATGG
95344860 AATAGAAAA-GAATAT
1 AATAGAAAACGAATAT
95344875 AATAGAAAACGAATA
1 AATAGAAAACGAATA
95344890 GGAGAGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.03, G:0.13, T:0.17
Consensus pattern (16 bp):
AATAGAAAACGAATAT
Found at i:95344918 original size:15 final size:16
Alignment explanation
Indices: 95344898--95344936 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
95344888 TAGGAGAGGA
*
95344898 AAAGGA-AAGAAAAAG
1 AAAGGAGAAAAAAAAG
95344913 AAAGGAGAAAAAAAAG
1 AAAGGAGAAAAAAAAG
95344929 -AAGGAGAA
1 AAAGGAGAA
95344937 TTAGAGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AAAGGAGAAAAAAAAG
Found at i:95346395 original size:2 final size:2
Alignment explanation
Indices: 95346388--95346429 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
95346378 AATTGGTTGA
95346388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95346430 GAACATATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95347160 original size:19 final size:20
Alignment explanation
Indices: 95347123--95347160 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
95347113 AGAGGGAAAA
*
95347123 TATGATTAAATTATGATGTG
1 TATGATTAAATGATGATGTG
*
95347143 TATG-TTAAATGATTATGT
1 TATGATTAAATGATGATGT
95347161 AATTTTCGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (20 bp):
TATGATTAAATGATGATGTG
Found at i:95348846 original size:8 final size:7
Alignment explanation
Indices: 95348828--95348861 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
95348818 ATACCCAAAT
95348828 AACCCTA
1 AACCCTA
95348835 AACCCTA
1 AACCCTA
95348842 TAACCCTAA
1 -AACCCT-A
95348851 AACCCTA
1 AACCCTA
95348858 AACC
1 AACC
95348862 TAGGAGTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 12 0.48
8 12 0.48
9 1 0.04
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
AACCCTA
Found at i:95348846 original size:15 final size:16
Alignment explanation
Indices: 95348826--95348861 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
95348816 AAATACCCAA
95348826 ATAACCCT-AAACCCT
1 ATAACCCTAAAACCCT
95348841 ATAACCCTAAAACCCT
1 ATAACCCTAAAACCCT
95348857 A-AACC
1 ATAACC
95348862 TAGGAGTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (16 bp):
ATAACCCTAAAACCCT
Found at i:95349370 original size:17 final size:16
Alignment explanation
Indices: 95349350--95349393 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
95349340 ATAAAAATTG
95349350 AAATAATTGTATATTTA
1 AAATAATTGTA-ATTTA
95349367 AAATAATTGTAATTTA
1 AAATAATTGTAATTTA
*
95349383 ATAAGAATTGT
1 A-AATAATTGT
95349394 GATAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (16 bp):
AAATAATTGTAATTTA
Found at i:95351389 original size:2 final size:2
Alignment explanation
Indices: 95351382--95351416 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95351372 AATTAATTAT
95351382 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95351417 GGGTTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95352199 original size:22 final size:21
Alignment explanation
Indices: 95352172--95352211 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
95352162 ATTTTTGGGT
95352172 TTTTTTTAATTCACTATTTGA
1 TTTTTTTAATTCACTATTTGA
95352193 TTTTTTTAATTCACTATTT
1 TTTTTTTAATTCACTATTT
95352212 AATTCACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTTTTAATTCACTATTTGA
Found at i:95352214 original size:12 final size:12
Alignment explanation
Indices: 95352176--95352221 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
95352166 TTGGGTTTTT
95352176 TTTAATTCACTA
1 TTTAATTCACTA
* *
95352188 TTTGATT---TT
1 TTTAATTCACTA
95352197 TTTAATTCACTA
1 TTTAATTCACTA
95352209 TTTAATTCACTA
1 TTTAATTCACTA
95352221 T
1 T
95352222 AATATTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
9 7 0.26
12 20 0.74
ACGTcount: A:0.28, C:0.13, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTAATTCACTA
Found at i:95353413 original size:9 final size:9
Alignment explanation
Indices: 95353399--95353428 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
95353389 GGAAGAAGGA
95353399 GATCTTGAT
1 GATCTTGAT
95353408 GATCTTGAT
1 GATCTTGAT
95353417 GATCTTGAT
1 GATCTTGAT
95353426 GAT
1 GAT
95353429 ATATATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (9 bp):
GATCTTGAT
Found at i:95356513 original size:20 final size:22
Alignment explanation
Indices: 95356467--95356514 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
95356457 TAGCTCTTAT
* *
95356467 TATTTTTTATTATTTTATTATG
1 TATTTTTTATTATATTATTAAG
*
95356489 AATTTTTTA-TA-ATTATTAAG
1 TATTTTTTATTATATTATTAAG
95356509 TATTTT
1 TATTTT
95356515 AAGTTATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TATTTTTTATTATATTATTAAG
Found at i:95356525 original size:18 final size:18
Alignment explanation
Indices: 95356504--95356538 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95356494 TTTATAATTA
*
95356504 TTAAGTATTTTAAGTTAT
1 TTAAGAATTTTAAGTTAT
*
95356522 TTAAGAATTTTATGTTA
1 TTAAGAATTTTAAGTTA
95356539 ACAAGAAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TTAAGAATTTTAAGTTAT
Found at i:95362169 original size:4 final size:4
Alignment explanation
Indices: 95362160--95362192 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
95362150 AGTAGGTTAA
*
95362160 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A
95362193 GTTACAGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:95366304 original size:28 final size:27
Alignment explanation
Indices: 95366236--95366351 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
95366226 GATATGACAT
* *
95366236 TGTGCTAAGTGAAATAAGGCCATGACA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
95366263 --T-CTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
95366288 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
95366315 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
95366339 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
95366352 GAAATTTCCG
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
24 42 0.55
25 3 0.04
27 3 0.04
28 29 0.38
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:95366305 original size:52 final size:51
Alignment explanation
Indices: 95366236--95366351 Score: 187
Period size: 52 Copynumber: 2.2 Consensus size: 51
95366226 GATATGACAT
*
95366236 TGTGCTAAGTGAAATAAGGCCATGACATCTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGGCCATGACATCTAAGTGAAATAAGTCCATGGC-A
* *
95366288 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGGCCATGACATCTAAGTGAAATAAGTCCATGGCA
95366339 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
95366352 GAAATTTCCG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 2 0.03
52 58 0.97
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (51 bp):
TGTGCTAAGTGAAATAAGGCCATGACATCTAAGTGAAATAAGTCCATGGCA
Found at i:95366479 original size:51 final size:50
Alignment explanation
Indices: 95366375--95366625 Score: 292
Period size: 51 Copynumber: 4.9 Consensus size: 50
95366365 TGAACCTTAG
* * * * ** *
95366375 GAATAAAATAGATTTGGACACAAGTGAGTTA-TATGTGAAGGAAACTTTAT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAA-GCCACTTTGT
* *
95366425 GAATATAATTGCTTTGGACACAAGTGTGGTACTAAGTGAAGCTCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGC-CACTTTGT
*
95366476 GAATATAATAGCTTTGGACACAAGTGTGGTACTAAGTGAAAGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTG-AAGCCACTTTGT
*
95366527 GAATATAAAATAGCTTTGGACACAAGTGTGGTACTATGTAAAGGCCACTTTGT
1 GAATAT--AATAGCTTTGGACACAAGTGTGGTACTATGTGAA-GCCACTTTGT
*
95366580 GAATAAAATAGCTTTGG-CTACAAAG-GTGGTACTATGTGAAGGCCAC
1 GAATATAATAGCTTTGGAC-AC-AAGTGTGGTACTATGTGAA-GCCAC
95366626 CATGTATCCA
Statistics
Matches: 179, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
50 28 0.16
51 97 0.54
52 9 0.05
53 45 0.25
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (50 bp):
GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGCCACTTTGT
Found at i:95366562 original size:104 final size:102
Alignment explanation
Indices: 95366375--95366625 Score: 321
Period size: 104 Copynumber: 2.5 Consensus size: 102
95366365 TGAACCTTAG
* * * ** *
95366375 GAATAAAATAGATTTGGACACAAGTGAGTTA-TATGTGAAGGAAACTTTATGAATATAATTGCTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTATGAATATAATAGCTT
*
95366439 TGGACACAAGTGTGGTACTAAGTGAA-GCTCACTTTGT
66 TGGACACAAGTGTGGTACTAAGTAAAGGC-CACTTTGT
* * * *
95366476 GAATATAATAGCTTTGGACACAAGTGTGGTACTAAGTGAAAGCCACTTTGTGAATATAAAATAGC
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTATGAATAT--AATAGC
*
95366541 TTTGGACACAAGTGTGGTACTATGTAAAGGCCACTTTGT
64 TTTGGACACAAGTGTGGTACTAAGTAAAGGCCACTTTGT
95366580 GAATAAAATAGCTTTGG-CTACAAAG-GTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-AC-AAGTGTGGTACTATGTGAAGGCCAC
95366626 CATGTATCCA
Statistics
Matches: 129, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
101 27 0.21
102 20 0.16
103 1 0.01
104 76 0.59
105 5 0.04
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (102 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTATGAATATAATAGCTT
TGGACACAAGTGTGGTACTAAGTAAAGGCCACTTTGT
Found at i:95388687 original size:47 final size:43
Alignment explanation
Indices: 95388575--95388704 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 43
95388565 GAGTTATTGT
*
95388575 GAGCTAGTGTAAGACATGTCTGGGACATACATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTATGA
95388621 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT---ATGA
*
95388669 GCGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
95388705 CTCGAAACGT
Statistics
Matches: 77, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
45 4 0.05
46 22 0.29
47 28 0.36
48 23 0.30
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (43 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTATGA
Found at i:95388724 original size:46 final size:45
Alignment explanation
Indices: 95388576--95388746 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
95388566 AGTTATTGTG
* * *
95388576 AGCTAGTGTAAGACATGTCTGGGACATACATCGGCCAC-ATTA-TGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AAGT-A
* * *
95388621 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-TGA
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAAGT-A
*
95388669 GCGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAA-GTA
*
95388716 AG-TCAGTGTAAGACATGTCTAGGACATGCAT
1 AGCT-AGTGTAAGACATGTCTGGGACATGCAT
95388747 TGACTAGAGA
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
45 1 0.01
46 52 0.48
47 29 0.27
48 25 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAAGTA
Found at i:95396334 original size:46 final size:45
Alignment explanation
Indices: 95396185--95396355 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
95396175 ATTGTGAGCT
* * * *
95396185 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA-AGCC
** * *
95396231 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGAC-AAGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAAGC-C
95396278 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AAGCC
* *
95396325 AGTGTAAGACATGTTTGGGACATGTATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
95396356 TACGAAAGGT
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
46 53 0.51
47 30 0.29
48 20 0.19
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAAGCC
Found at i:95398850 original size:80 final size:80
Alignment explanation
Indices: 95398766--95398914 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
95398756 TATGGTAACC
* * * *
95398766 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
95398830 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
95398846 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
95398911 CCGG
66 CCGG
95398915 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:95398856 original size:40 final size:38
Alignment explanation
Indices: 95398807--95398914 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
95398797 ATCACGATTT
*
95398807 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95398847 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95398887 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95398915 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95406968 original size:80 final size:80
Alignment explanation
Indices: 95406884--95407032 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
95406874 TATGGTAACC
* * * *
95406884 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
95406948 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
95406964 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
95407029 CCGG
66 CCGG
95407033 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:95406974 original size:40 final size:38
Alignment explanation
Indices: 95406925--95407032 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
95406915 ATCACGATTT
*
95406925 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95406965 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95407005 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95407033 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95413311 original size:31 final size:31
Alignment explanation
Indices: 95413254--95413347 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
95413244 CCTTTTCATA
95413254 TTTCATATTTCATAATACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
95413284 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
95413315 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
95413346 TT
1 TT
95413348 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 19 0.31
31 43 0.69
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:95413590 original size:24 final size:24
Alignment explanation
Indices: 95413539--95413657 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
95413529 GCTTTATCAT
*
95413539 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
95413564 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
95413588 ATAACTAGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
95413611 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
95413635 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
95413658 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.26
24 51 0.60
25 12 0.14
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:95413616 original size:47 final size:48
Alignment explanation
Indices: 95413553--95413657 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
95413543 CTGGAGGCCT
95413553 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
* ** *
95413602 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
95413649 AGCCCTTTT
1 AGCCCTTTT
95413658 TCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 43 0.83
48 5 0.10
49 4 0.08
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
Found at i:95413733 original size:20 final size:20
Alignment explanation
Indices: 95413708--95413767 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
95413698 TATGATTACC
95413708 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
95413728 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
95413748 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
95413768 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:95413738 original size:11 final size:11
Alignment explanation
Indices: 95413708--95413762 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
95413698 TATGATTACC
95413708 TCATGTGCATA
1 TCATGTGCATA
*
95413719 TCA--TACATA
1 TCATGTGCATA
95413728 TCATGTGCATA
1 TCATGTGCATA
* *
95413739 TCA--TACATT
1 TCATGTGCATA
95413748 TCATGTGCATA
1 TCATGTGCATA
95413759 TCAT
1 TCAT
95413763 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:95413842 original size:25 final size:25
Alignment explanation
Indices: 95413810--95413857 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95413800 ATACATAAAC
* * *
95413810 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
95413835 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
95413858 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:95415899 original size:34 final size:34
Alignment explanation
Indices: 95415856--95415921 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
95415846 TATATATATA
*
95415856 TATATATATGCATGACTTATATGAAGTTAAACGG
1 TATATATATGCATGACTTAAATGAAGTTAAACGG
95415890 TATATATATGCATGACTTAAATGAAGTTAAAC
1 TATATATATGCATGACTTAAATGAAGTTAAAC
95415922 CTACTAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (34 bp):
TATATATATGCATGACTTAAATGAAGTTAAACGG
Found at i:95427121 original size:22 final size:24
Alignment explanation
Indices: 95427085--95427132 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
95427075 AATTCTATGC
95427085 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
95427107 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
95427131 TA
1 TA
95427133 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:95427156 original size:3 final size:3
Alignment explanation
Indices: 95427148--95427177 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
95427138 GATTATCATC
*
95427148 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95427178 AAAACTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:95427243 original size:22 final size:20
Alignment explanation
Indices: 95427204--95427250 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
95427194 CCTAAAATTG
95427204 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
95427223 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
95427246 ATAAT
1 ATAAT
95427251 TATCATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:95435555 original size:7 final size:7
Alignment explanation
Indices: 95435543--95435567 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
95435533 CTATTTGGTC
95435543 CGTTCTT
1 CGTTCTT
95435550 CGTTCTT
1 CGTTCTT
95435557 CGTTCTT
1 CGTTCTT
95435564 CGTT
1 CGTT
95435568 GCCCTCGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.16, T:0.56
Consensus pattern (7 bp):
CGTTCTT
Found at i:95444634 original size:2 final size:2
Alignment explanation
Indices: 95444622--95444651 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
95444612 TAAGAGCTTA
95444622 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95444652 GATTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:95452843 original size:40 final size:40
Alignment explanation
Indices: 95452788--95452863 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
95452778 ACACCACGTG
* *
95452788 GGGATAAAATCGACCTACCCATCCCTGCACATCATATATA
1 GGGATAAAATCGACCTACCCATCCCTACACACCATATATA
*
95452828 GGGATAAAATCGACCTATCCATCCCTACACACCATA
1 GGGATAAAATCGACCTACCCATCCCTACACACCATA
95452864 AGGTACTGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.36, C:0.32, G:0.12, T:0.21
Consensus pattern (40 bp):
GGGATAAAATCGACCTACCCATCCCTACACACCATATATA
Found at i:95453037 original size:23 final size:23
Alignment explanation
Indices: 95453010--95453054 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
95453000 ATGCAGAAAG
*
95453010 ACAGATCATACATTCATACTAGA
1 ACAGATCAGACATTCATACTAGA
* *
95453033 ACAGATCAGATATTCATTCTAG
1 ACAGATCAGACATTCATACTAG
95453055 GTATAACATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (23 bp):
ACAGATCAGACATTCATACTAGA
Found at i:95458831 original size:5 final size:5
Alignment explanation
Indices: 95458821--95458923 Score: 56
Period size: 5 Copynumber: 20.2 Consensus size: 5
95458811 TATGTCTTTC
* * *
95458821 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAGA AAAAT CAAAAG AAGAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAA-T AAAAT -AAAAT AA-AAT
*
95458869 AAAAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAGAAT -AACT -AAAT
1 -AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT
95458914 -AAAT AAAAT A
1 AAAAT AAAAT A
95458924 GGAGGATTCA
Statistics
Matches: 78, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
3 3 0.04
4 13 0.17
5 32 0.41
6 28 0.36
7 2 0.03
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:95458885 original size:9 final size:9
Alignment explanation
Indices: 95458871--95458923 Score: 58
Period size: 9 Copynumber: 6.1 Consensus size: 9
95458861 AGAAGAATAA
95458871 AAATAAAAT
1 AAATAAAAT
95458880 AAATAAAAT
1 AAATAAAAT
*
95458889 AAA-ATAA-
1 AAATAAAAT
95458896 AAATAAGAAT
1 AAATAA-AAT
*
95458906 AACT-AAAT
1 AAATAAAAT
95458914 AAATAAAAT
1 AAATAAAAT
95458923 A
1 A
95458924 GGAGGATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
7 3 0.08
8 10 0.28
9 20 0.56
10 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:95458889 original size:14 final size:14
Alignment explanation
Indices: 95458870--95458923 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
95458860 AAGAAGAATA
95458870 AAAATAAAATAAAT
1 AAAATAAAATAAAT
95458884 AAAATAAAATAAAAAT
1 AAAATAAAAT--AAAT
*
95458900 AAGAAT-AACTAAAT
1 AA-AATAAAATAAAT
95458914 -AAATAAAATA
1 AAAATAAAATA
95458924 GGAGGATTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
12 3 0.09
13 5 0.15
14 14 0.41
16 9 0.26
17 3 0.09
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:95458913 original size:25 final size:24
Alignment explanation
Indices: 95458866--95458921 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
95458856 TCAAAAGAAG
95458866 AATAAAAATAAAATAAATAAAATAA
1 AATAAAAATAAAATAAATAAAAT-A
*
95458891 AATAAAAATAAGAATAACT-AAATA
1 AATAAAAATAA-AATAAATAAAATA
95458915 AATAAAA
1 AATAAAA
95458922 TAGGAGGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 8 0.28
25 15 0.52
26 6 0.21
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.20
Consensus pattern (24 bp):
AATAAAAATAAAATAAATAAAATA
Found at i:95467756 original size:21 final size:21
Alignment explanation
Indices: 95467732--95467773 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
95467722 TCATCAGATC
* *
95467732 TACACCTTGAGGCATCGGGGG
1 TACAACTTGAGGAATCGGGGG
*
95467753 TACAAGTTGAGGAATCGGGGG
1 TACAACTTGAGGAATCGGGGG
95467774 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.17, G:0.40, T:0.19
Consensus pattern (21 bp):
TACAACTTGAGGAATCGGGGG
Found at i:95472366 original size:13 final size:13
Alignment explanation
Indices: 95472344--95472376 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
95472334 AAGGATTTGT
95472344 TTAT-TAAACTAA
1 TTATCTAAACTAA
95472356 TTATCTAAACTAA
1 TTATCTAAACTAA
*
95472369 TTAACTAA
1 TTATCTAA
95472377 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:95483023 original size:79 final size:79
Alignment explanation
Indices: 95482924--95483079 Score: 294
Period size: 79 Copynumber: 2.0 Consensus size: 79
95482914 GAGGTCTTTT
95482924 CTTGTCGCATTGGGGTATGGCACATAAGGTTTATATTCTGTACTTACCAATTTTTGTTCGTTTTG
1 CTTGTCGCATTGGGGTATGGCACATAAGGTTTATATTCTGTACTTACCAATTTTTGTTCGTTTTG
95482989 GCCTAACTCATTTC
66 GCCTAACTCATTTC
*
95483003 CTTGTCGCATTGGGGTATGGCACATGAGGTTTATATTCTGTACTTACCAATTTTTGTTCGTTTTG
1 CTTGTCGCATTGGGGTATGGCACATAAGGTTTATATTCTGTACTTACCAATTTTTGTTCGTTTTG
*
95483068 GCCTACCTCATT
66 GCCTAACTCATT
95483080 CTTACCTTCG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (79 bp):
CTTGTCGCATTGGGGTATGGCACATAAGGTTTATATTCTGTACTTACCAATTTTTGTTCGTTTTG
GCCTAACTCATTTC
Found at i:95490814 original size:130 final size:130
Alignment explanation
Indices: 95490581--95490843 Score: 499
Period size: 130 Copynumber: 2.0 Consensus size: 130
95490571 GGTGCCATTG
95490581 TTGTTCGAATAAAATCCAATATACCCTTTTTGAAAAACAATTTCTTTAATACCCCATTTTTTATA
1 TTGTTCGAATAAAATCCAATATACCCTTTTTGAAAAACAATTTCTTTAATACCCCATTTTTTATA
95490646 AACAATTCTAACATACTAACACAAACACTCTCCAATTTTTATTGGTATCTTTTCTTAGATGTTAT
66 AACAATTCTAACATACTAACACAAACACTCTCCAATTTTTATTGGTATCTTTTCTTAGATGTTAT
95490711 TTGTTCGAATAAAATCCAATATACCCTTTTTGAAAAACAATTTCTTTAATACCCCATTTTTTATA
1 TTGTTCGAATAAAATCCAATATACCCTTTTTGAAAAACAATTTCTTTAATACCCCATTTTTTATA
* * *
95490776 AACATTTCTAACATATTAACACAAACACTCTCCAATTTTTATTGGTATTTTTTCTTAGATGTTAT
66 AACAATTCTAACATACTAACACAAACACTCTCCAATTTTTATTGGTATCTTTTCTTAGATGTTAT
95490841 TTG
1 TTG
95490844 ATTAAATATA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 130 1.00
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42
Consensus pattern (130 bp):
TTGTTCGAATAAAATCCAATATACCCTTTTTGAAAAACAATTTCTTTAATACCCCATTTTTTATA
AACAATTCTAACATACTAACACAAACACTCTCCAATTTTTATTGGTATCTTTTCTTAGATGTTAT
Found at i:95492247 original size:29 final size:29
Alignment explanation
Indices: 95492206--95492262 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
95492196 AATTAGACTC
*
95492206 TTTTTAAAAGGTTGATG-GTTGAATTTAAT
1 TTTTTAAAAGGTTGA-GAGTTAAATTTAAT
*
95492235 TTTTTTAAAGGTTGAGAGTTAAATTTAA
1 TTTTTAAAAGGTTGAGAGTTAAATTTAA
95492263 CTCAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.47
Consensus pattern (29 bp):
TTTTTAAAAGGTTGAGAGTTAAATTTAAT
Found at i:95493951 original size:31 final size:31
Alignment explanation
Indices: 95493916--95493981 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
95493906 TAAAGTGATT
95493916 ATTGAACTA-TATGAAAGTTTTCATTTAAGTC
1 ATTGAACTATTA-GAAAGTTTTCATTTAAGTC
* * *
95493947 ATTGAACTGTTAGAAAGTTTTTATTTAAGTT
1 ATTGAACTATTAGAAAGTTTTCATTTAAGTC
95493978 ATTG
1 ATTG
95493982 GGTATTTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.45
Consensus pattern (31 bp):
ATTGAACTATTAGAAAGTTTTCATTTAAGTC
Found at i:95495813 original size:19 final size:20
Alignment explanation
Indices: 95495778--95495817 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
95495768 TAATAAAATA
95495778 TAAAATTTATATATTTTAAT
1 TAAAATTTATATATTTTAAT
95495798 TAAAATTTAT-TATTTTAAT
1 TAAAATTTATATATTTTAAT
95495817 T
1 T
95495818 TCGCTTAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAAAATTTATATATTTTAAT
Found at i:95496974 original size:14 final size:16
Alignment explanation
Indices: 95496944--95496976 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
95496934 ATTTAAGAGC
95496944 TAAAAGAAACATTATA
1 TAAAAGAAACATTATA
95496960 TAAAA-AAAC-TTATA
1 TAAAAGAAACATTATA
95496974 TAA
1 TAA
95496977 TATTAACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (16 bp):
TAAAAGAAACATTATA
Found at i:95500095 original size:37 final size:37
Alignment explanation
Indices: 95500045--95500120 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
95500035 TGAAGCAACC
95500045 TGTTTATGTAAGTTATAATTGTTGTAAGTATTGTTGT
1 TGTTTATGTAAGTTATAATTGTTGTAAGTATTGTTGT
95500082 TGTTTATGTAAGTTATAATTGTTGTAAGTATTGTTGT
1 TGTTTATGTAAGTTATAATTGTTGTAAGTATTGTTGT
95500119 TG
1 TG
95500121 GAGTAAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (37 bp):
TGTTTATGTAAGTTATAATTGTTGTAAGTATTGTTGT
Found at i:95500757 original size:10 final size:9
Alignment explanation
Indices: 95500737--95500774 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
95500727 ATTGACAAAT
95500737 AAAT-TAAA
1 AAATATAAA
*
95500745 AATTATAAA
1 AAATATAAA
95500754 AAATATTAAA
1 AAATA-TAAA
95500764 AAATATAAA
1 AAATATAAA
95500773 AA
1 AA
95500775 CAATTAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.12
9 14 0.54
10 9 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAATATAAA
Found at i:95500780 original size:19 final size:18
Alignment explanation
Indices: 95500737--95500781 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
95500727 ATTGACAAAT
*
95500737 AAATTAAAAATTATAAAA
1 AAATTAAAAAATATAAAA
95500755 AATATTAAAAAATATAAAA
1 AA-ATTAAAAAATATAAAA
95500774 ACAATTAA
1 A-AATTAA
95500782 GATTTGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 21 0.88
20 1 0.04
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AAATTAAAAAATATAAAA
Found at i:95504811 original size:15 final size:15
Alignment explanation
Indices: 95504800--95504829 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95504790 GTTATAATAT
95504800 TAATAATAATAAAAG
1 TAATAATAATAAAAG
95504815 TAATAATAATAAAAG
1 TAATAATAATAAAAG
95504830 AAAGAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
TAATAATAATAAAAG
Found at i:95504837 original size:15 final size:15
Alignment explanation
Indices: 95504804--95504838 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
95504794 TAATATTAAT
* *
95504804 AATAATAAAAGTAAT
1 AATAATAAAAGAAAG
95504819 AATAATAAAAGAAAG
1 AATAATAAAAGAAAG
95504834 AATAA
1 AATAA
95504839 AGAAAAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (15 bp):
AATAATAAAAGAAAG
Found at i:95504837 original size:18 final size:18
Alignment explanation
Indices: 95504800--95504838 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
95504790 GTTATAATAT
*
95504800 TAATAATAATAAAAGTAA
1 TAATAATAAAAAAAGTAA
95504818 TAATAATAAAAGAAAG-AA
1 TAATAATAAAA-AAAGTAA
95504836 TAA
1 TAA
95504839 AGAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (18 bp):
TAATAATAAAAAAAGTAA
Found at i:95509824 original size:63 final size:63
Alignment explanation
Indices: 95509706--95509922 Score: 226
Period size: 63 Copynumber: 3.5 Consensus size: 63
95509696 CATGTGGCTC
* * * * * *
95509706 TACACAGCCTGG-CACACGCCTGTGTGCCTTGCCC-GTGTGTCTCAAATCTGAAGTCAATGAGT
1 TACACGGCCTGGACACATGCCCGTGTGTCTT-CCCAGTATGACTCAAATCTGAAGTCAATGAGT
* * * *
95509768 TACACGGCCTAGACACATGCCCTTGTGTCTTACCCA-TATGACTCTAATCTAAAGTCAGA-GAGT
1 TACACGGCCTGGACACATGCCCGTGTGTCTT-CCCAGTATGACTCAAATCTGAAGTCA-ATGAGT
* * * *
95509831 TACACGGCCTGGACACATGCTCGTGTGTCTTGCCAGTGTGACTCAAATCTGAAGTCAGTGAGT
1 TACACGGCCTGGACACATGCCCGTGTGTCTTCCCAGTATGACTCAAATCTGAAGTCAATGAGT
* * *
95509894 TACACGACCTGGACACATACCCGTTTGTC
1 TACACGGCCTGGACACATGCCCGTGTGTC
95509923 GGCTTGTGTG
Statistics
Matches: 127, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
62 13 0.10
63 113 0.89
64 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (63 bp):
TACACGGCCTGGACACATGCCCGTGTGTCTTCCCAGTATGACTCAAATCTGAAGTCAATGAGT
Found at i:95511576 original size:45 final size:44
Alignment explanation
Indices: 95511521--95511670 Score: 135
Period size: 45 Copynumber: 3.4 Consensus size: 44
95511511 CAGCGTTTAA
* * *
95511521 TGGTTAATCCACATCGTATTAGCAACTTTTATCTGCATCGAATAG
1 TGGTTTATCCACATCGTACTAGC-ACTTTTATCTGCATCGATTAG
* *
95511566 TGGTTTATCCACA-CTGAACTAGCCACTTTTATATGCAGT-GATTAG
1 TGGTTTATCCACATC-GTACTAG-CACTTTTATCTGCA-TCGATTAG
* ** * * *
95511611 TGATTTATTTACATCGTACTAGCA-TTTTATCTACAACGCTTAG
1 TGGTTTATCCACATCGTACTAGCACTTTTATCTGCATCGATTAG
*
95511654 TGGTTCATCCACATCGT
1 TGGTTTATCCACATCGT
95511671 GGTGCAAAGG
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
43 27 0.33
44 3 0.04
45 50 0.60
46 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (44 bp):
TGGTTTATCCACATCGTACTAGCACTTTTATCTGCATCGATTAG
Found at i:95512895 original size:5 final size:5
Alignment explanation
Indices: 95512885--95512910 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
95512875 GAGATGGAAT
95512885 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
95512911 ATATTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:95517423 original size:17 final size:16
Alignment explanation
Indices: 95517384--95517435 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
95517374 TTTTTATTTT
*
95517384 TTATTTTATTTTTTTCA
1 TTATTTTATTTTATT-A
*
95517401 CTATTTTATTTTATTA
1 TTATTTTATTTTATTA
95517417 TTAATTTTATTATTATTA
1 TT-ATTTTATT-TTATTA
95517435 T
1 T
95517436 AGAGAGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 2 0.07
17 21 0.70
18 7 0.23
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTTATTTTATTA
Found at i:95526255 original size:61 final size:61
Alignment explanation
Indices: 95526177--95526344 Score: 246
Period size: 61 Copynumber: 2.8 Consensus size: 61
95526167 AAATTGCGCC
* * *
95526177 ACAAAGGCATTCATTTACATTCAGTACTCGCCACAAAAGCTTTCATGTCCAGAGTTTTGCT
1 ACAAAGGCATTCCTTTACATTCAATACTCGCCACAAAGGCTTTCATGTCCAGAGTTTTGCT
* * * * *
95526238 ACAAAGGCATTCCTTTACATTTAATACTCTCTACAAAGGCTTTCTTGTCCAGAGTTTTGTT
1 ACAAAGGCATTCCTTTACATTCAATACTCGCCACAAAGGCTTTCATGTCCAGAGTTTTGCT
* *
95526299 ACAAAGGCGTTCCTTTACATTCAATATTCGCCACAAAGGCTTTCAT
1 ACAAAGGCATTCCTTTACATTCAATACTCGCCACAAAGGCTTTCAT
95526345 TTCCTGGTGA
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 93 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (61 bp):
ACAAAGGCATTCCTTTACATTCAATACTCGCCACAAAGGCTTTCATGTCCAGAGTTTTGCT
Found at i:95526531 original size:53 final size:53
Alignment explanation
Indices: 95526454--95526612 Score: 212
Period size: 53 Copynumber: 3.0 Consensus size: 53
95526444 CCTTCTTTAA
* *
95526454 TTTTTCTCATATGATGTCATAACCCACCAGTTACAATCTTACATGATATGATTT
1 TTTTTCT-ATATGATGTCATAACCCACCAGTTACAGTCTTACACGATATGATTT
* * * *
95526508 TTTTTCTATTTGATGTCATAACCCACCAGTTACTGTTTTACACGATATGGTCTT
1 TTTTTCTATATGATGTCATAACCCACCAGTTACAGTCTTACACGATATGAT-TT
* * *
95526562 TTTTT-TATATGATGTCATAACCCACCAATTACGGTCTTACACAATATGATT
1 TTTTTCTATATGATGTCATAACCCACCAGTTACAGTCTTACACGATATGATT
95526613 CTTCAAAGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 77 0.84
54 14 0.15
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.42
Consensus pattern (53 bp):
TTTTTCTATATGATGTCATAACCCACCAGTTACAGTCTTACACGATATGATTT
Found at i:95529426 original size:21 final size:21
Alignment explanation
Indices: 95529402--95529441 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
95529392 ACGGTCTAGA
* *
95529402 CACACGGTTGTGTAACCCCCT
1 CACACAGTCGTGTAACCCCCT
*
95529423 CACACAGTCGTGTGACCCC
1 CACACAGTCGTGTAACCCC
95529442 TATTTTACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (21 bp):
CACACAGTCGTGTAACCCCCT
Found at i:95530044 original size:87 final size:87
Alignment explanation
Indices: 95529841--95530031 Score: 238
Period size: 87 Copynumber: 2.2 Consensus size: 87
95529831 GAAAGTGTTG
* * *
95529841 ATCTGCAAACACTGGTGGTTTATCCACGAATTTACTAGCAGCTTTTATCTACAAATACGTTGTGT
1 ATCTGCAAACACTGGTGGTTTATCCACAAACTTACTAGCAGCTTTTATCTACAAATACGTTGTGC
* * *
95529906 ATTCATAACCTACTAGCAGTTT
66 ATCCACAACCTACTAGCAGTTC
* * * * * * *
95529928 ATTTGCAAACACTGATGGTTTATCCACAAACTTATTGGCAGCTTTTATTTGCAAATATGTTGTGC
1 ATCTGCAAACACTGGTGGTTTATCCACAAACTTACTAGCAGCTTTTATCTACAAATACGTTGTGC
* *
95529993 ATCCACAATCTACTGGCAGTTC
66 ATCCACAACCTACTAGCAGTTC
*
95530015 ATCTGCAAATACTGGTG
1 ATCTGCAAACACTGGTG
95530032 CTTAATCTAC
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (87 bp):
ATCTGCAAACACTGGTGGTTTATCCACAAACTTACTAGCAGCTTTTATCTACAAATACGTTGTGC
ATCCACAACCTACTAGCAGTTC
Found at i:95531730 original size:18 final size:20
Alignment explanation
Indices: 95531706--95531755 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
95531696 ATTTTGTTCA
95531706 AATTTTTAAAACATTT-TAT
1 AATTTTTAAAACATTTATAT
*
95531725 -ATTTTTAAATATATTTATAT
1 AATTTTTAAA-ACATTTATAT
95531745 AATTTTTAAAA
1 AATTTTTAAAA
95531756 AAATATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 5 0.19
20 4 0.15
21 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTTTTAAAACATTTATAT
Found at i:95531764 original size:21 final size:21
Alignment explanation
Indices: 95531723--95531773 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
95531713 AAAACATTTT
* * *
95531723 ATATTTTTAAATATATTTAT-
1 ATATTTTTAAAAAAATATATA
95531743 ATAATTTTTAAAAAAATATATA
1 AT-ATTTTTAAAAAAATATATA
95531765 ATATTTTTA
1 ATATTTTTA
95531774 TATTTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATATTTTTAAAAAAATATATA
Found at i:95531778 original size:29 final size:30
Alignment explanation
Indices: 95531735--95531792 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
95531725 ATTTTTAAAT
95531735 ATATTTATATAATTTTTAAAAAAATATATA
1 ATATTTATATAATTTTTAAAAAAATATATA
* *
95531765 ATATTTTTAT-ATTTTTATAAAAATATAT
1 ATATTTATATAATTTTTAAAAAAATATAT
95531793 TTTTCATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
ATATTTATATAATTTTTAAAAAAATATATA
Found at i:95535510 original size:35 final size:35
Alignment explanation
Indices: 95535464--95535534 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
95535454 GGTCGTTTTC
*
95535464 TACGAAAACGTTTTCATGTAAACTCGATTTAGTGT
1 TACGAAAACGTTTCCATGTAAACTCGATTTAGTGT
*
95535499 TACGAAAACGTTTCCATGTAAACTTGATTTAGTGT
1 TACGAAAACGTTTCCATGTAAACTCGATTTAGTGT
95535534 T
1 T
95535535 TGCGTCAGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (35 bp):
TACGAAAACGTTTCCATGTAAACTCGATTTAGTGT
Found at i:95535782 original size:22 final size:22
Alignment explanation
Indices: 95535732--95535797 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
95535722 CCTTAAAAAA
* *
95535732 TCTATCAAATTTC-ATTGAAATT
1 TCTATCAAAATTCTA-TCAAATT
*
95535754 T-TCTCAAAATTCTATCAAATT
1 TCTATCAAAATTCTATCAAATT
95535775 TCTATCAAAATTCTATCAAATT
1 TCTATCAAAATTCTATCAAATT
95535797 T
1 T
95535798 GTTTGTTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.42
22 22 0.58
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.44
Consensus pattern (22 bp):
TCTATCAAAATTCTATCAAATT
Found at i:95535796 original size:32 final size:32
Alignment explanation
Indices: 95535727--95535794 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
95535717 TATTTCCTTA
* ** * *
95535727 AAAAATCTATCAAATTTCATTGAAATTTTCTC
1 AAAATTCTATCAAATTTCATCAAAATTCTATC
95535759 AAAATTCTATCAAATTTCTATCAAAATTCTATC
1 AAAATTCTATCAAATTTC-ATCAAAATTCTATC
95535792 AAA
1 AAA
95535795 TTTGTTTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.38
Consensus pattern (32 bp):
AAAATTCTATCAAATTTCATCAAAATTCTATC
Found at i:95536066 original size:49 final size:48
Alignment explanation
Indices: 95535932--95536067 Score: 159
Period size: 48 Copynumber: 2.8 Consensus size: 48
95535922 AGTGATAGTT
** * * *
95535932 TTAAATTTTAAATACTATTCGATATTTTTTTAATTTATGCAAATTTAA
1 TTAAATTTGCAATACTGTTTGATATTTTTTTCATTTATGCAAATTTAA
* *
95535980 TTAAATTTGCAATATTGTTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAATTTGCAATACTGTTTGATATTTTTTTCATTTATGCAAATT-TAA
*
95536028 TTACAATTT-CAATACTGTTTGATTTTTTTTTTCATTTATG
1 TTA-AATTTGCAATACTGTTTGA-TATTTTTTTCATTTATG
95536068 ATGTTTGCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 4 0.05
48 51 0.68
49 20 0.27
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (48 bp):
TTAAATTTGCAATACTGTTTGATATTTTTTTCATTTATGCAAATTTAA
Found at i:95540661 original size:29 final size:28
Alignment explanation
Indices: 95540564--95540678 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 28
95540554 TACCTGTATC
* *
95540564 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
95540592 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
*
95540621 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
95540650 TGG-CCAGATAGGCCCAGTCACATTCATA
1 TGGCCCA-TTAGGCCCAATCACATTCATA
95540678 T
1 T
95540679 TCATTCTCAC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
28 30 0.39
29 45 0.59
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:95540907 original size:8 final size:8
Alignment explanation
Indices: 95540896--95540930 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
95540886 ACTTTCAACT
95540896 TTTCGGCA
1 TTTCGGCA
95540904 TTTCGGCA
1 TTTCGGCA
95540912 TTTCGGCA
1 TTTCGGCA
*
95540920 TTTCGGTA
1 TTTCGGCA
95540928 TTT
1 TTT
95540931 TGACTTTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:95542805 original size:62 final size:62
Alignment explanation
Indices: 95542708--95542831 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
95542698 TATTGGAATT
95542708 GAATTTAACCACATTGTAGTTAAGCCCGTTCATGATGTTATGTTGTTTTAATGCACCAAGAA
1 GAATTTAACCACATTGTAGTTAAGCCCGTTCATGATGTTATGTTGTTTTAATGCACCAAGAA
95542770 GAATTTAACCACATTGTAGTTAAGCCCGTTCATGATGTTATGTTGTTTTAATGCACCAAGAA
1 GAATTTAACCACATTGTAGTTAAGCCCGTTCATGATGTTATGTTGTTTTAATGCACCAAGAA
95542832 AACTATCTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (62 bp):
GAATTTAACCACATTGTAGTTAAGCCCGTTCATGATGTTATGTTGTTTTAATGCACCAAGAA
Found at i:95544126 original size:126 final size:126
Alignment explanation
Indices: 95543894--95544404 Score: 646
Period size: 126 Copynumber: 4.0 Consensus size: 126
95543884 TTATAGCCTC
* * *
95543894 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATTCACGTGGGAGCTTTTTTTTTTTGAAATTTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGC---TTTTTTCTGAAATTTTA
* * ** * * *
95543959 CTAACAGTGCATCCTACTTGAAGTGTTTTCGACACTATTTGTTCAGAAACGTCTACTCATAGTT
63 CTGACAGTGCATCATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
95544023 ATTTTTCTATGAACTACTATAGCAAAAGAGCATCCACATGGGAGCTTTTTTCTGAAATTTTATTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
*
95544088 ACAGTGCATCATGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
95544149 ATTTTTCTACGAACTATTGTAGCAAAAGTGCGTCCACGCGGGAGC-TTTTTCTAGAAATTTTACT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCT-GAAATTTTACT
* * * * * * *
95544213 GATAGTGCATCATGCTTGAAACGTTTTTGACATTATATGTTCAGAAACGTCTATTCAGAATT
65 GACAGTGCATCATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * * ** *
95544275 ATTTTTCTACGAACTACTGTAGCAAAAAAGCGTTCATGTGGGAGCTTTTTCCAAAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
* *
95544340 ACAGTGCATCCTACTTGAAGCATTTTTCGACACTATTTGTTTAGAAACGTCTACTCAGAATT
66 ACAGTGCATCATACTTGAAGCATTTTT-GACACTATTTGTTCAGAAACGTCTACTCAGAATT
95544402 ATT
1 ATT
95544405 CTTGCAGAAA
Statistics
Matches: 331, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
125 7 0.02
126 245 0.74
127 38 0.11
129 41 0.12
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
ACAGTGCATCATACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:95544604 original size:34 final size:34
Alignment explanation
Indices: 95544492--95544604 Score: 92
Period size: 34 Copynumber: 3.4 Consensus size: 34
95544482 TTTAAAAAAA
*
95544492 CTAAACTCTAATTTAATGAATTAACCCTAATACC
1 CTAAACTCTAATTTAATGAATTAACCCTAAAACC
* * **
95544526 CTAAACTCTAATTTAGT-ATTTAGTA-TTTAAAA--
1 CTAAACTCTAATTTAATGAATTA--ACCCTAAAACC
* *
95544558 TTAATAGT-TAATTTAATGAATTAACCCTAAAACC
1 CTAA-ACTCTAATTTAATGAATTAACCCTAAAACC
*
95544592 CTAAATTCTAATT
1 CTAAACTCTAATT
95544605 CAATTATTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
31 1 0.02
32 16 0.28
33 12 0.21
34 28 0.48
35 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.38
Consensus pattern (34 bp):
CTAAACTCTAATTTAATGAATTAACCCTAAAACC
Found at i:95548169 original size:40 final size:40
Alignment explanation
Indices: 95548121--95548210 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
95548111 CTTTTCAGGT
* * *
95548121 CAAATCCTATTCGCCTTAAGTTACCGTAGTGAATCAGGAA
1 CAAATCCTATTCACCTTAAGTTACCATAGTGAATCAAGAA
* * *
95548161 TAAATCCTATTCACTTTAAGTTACCATAGTGAATCAATAA
1 CAAATCCTATTCACCTTAAGTTACCATAGTGAATCAAGAA
95548201 CAAATCCTAT
1 CAAATCCTAT
95548211 CCATTTTGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (40 bp):
CAAATCCTATTCACCTTAAGTTACCATAGTGAATCAAGAA
Found at i:95550669 original size:3 final size:3
Alignment explanation
Indices: 95550654--95550725 Score: 126
Period size: 3 Copynumber: 23.7 Consensus size: 3
95550644 ATCTATTCCG
*
95550654 TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95550702 TTA TTA TTA TTA TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA T-TA TT
95550726 GTGTATTTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 63 0.95
4 3 0.05
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:95551665 original size:24 final size:24
Alignment explanation
Indices: 95551633--95551682 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
95551623 TAAAAAAGGC
95551633 TTGGTGGCGACTCCCATTTTCATT
1 TTGGTGGCGACTCCCATTTTCATT
95551657 TTGGTGGCGACTCCCATTTTCATT
1 TTGGTGGCGACTCCCATTTTCATT
95551681 TT
1 TT
95551683 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (24 bp):
TTGGTGGCGACTCCCATTTTCATT
Found at i:95554492 original size:19 final size:20
Alignment explanation
Indices: 95554448--95554492 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
95554438 CGCCTCTTTT
*
95554448 TGCATT-CATTTCATTCATC
1 TGCATTACATTTCATTCATA
95554467 TGCATTACATTTCA-TCATA
1 TGCATTACATTTCATTCATA
*
95554486 TGTATTA
1 TGCATTA
95554493 AGTTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TGCATTACATTTCATTCATA
Found at i:95558244 original size:45 final size:46
Alignment explanation
Indices: 95558140--95558260 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 46
95558130 TGTCTTCGAC
** *
95558140 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATT-CTGTCTCCAATGCC--A-ATATATCTAAT
* *
95558190 ATGGGCTTACATGGCTCATTCTGTCTCCAATGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCTGTCTCCAATGCCAATATATCTAAT
95558235 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCA-TTCTGTC
95558261 CTGTCAACCC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
45 27 0.42
46 7 0.11
49 14 0.22
50 16 0.25
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCTGTCTCCAATGCCAATATATCTAAT
Found at i:95558620 original size:30 final size:30
Alignment explanation
Indices: 95558586--95558646 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
95558576 TCCTTTACTC
*
95558586 AAACTTTT-CAAAAATTACATTTTTGCCCCT
1 AAACTTTTGC-AAAATTACACTTTTGCCCCT
* *
95558616 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
95558646 A
1 A
95558647 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:95572557 original size:44 final size:44
Alignment explanation
Indices: 95572481--95572609 Score: 168
Period size: 44 Copynumber: 2.9 Consensus size: 44
95572471 GTCATCGTGG
* * *
95572481 CAAATCTCATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCCA
1 CAAACCTCATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGCCA
* * * **
95572525 CAAACCTTATCTCCCTGAAATTACAGTGGAGCAGGTTGAAGTTA
1 CAAACCTCATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGCCA
* *
95572569 CAAATCTCATCTCCTTGAAATTGCAGTGGAGCAGATTGAAG
1 CAAACCTCATCTCCCTGAAATTGCAGTGGAGCAGATTGAAG
95572610 ATAGCGAATC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 72 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (44 bp):
CAAACCTCATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGCCA
Found at i:95574615 original size:3 final size:3
Alignment explanation
Indices: 95574607--95574657 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
95574597 TATTCCGTTG
95574607 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
95574656 TT
1 TT
95574658 GTGTATTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:95582851 original size:143 final size:143
Alignment explanation
Indices: 95582649--95583015 Score: 488
Period size: 143 Copynumber: 2.6 Consensus size: 143
95582639 TAATTTCAAC
* * ** * *
95582649 CTGCTCCACTACAACTTCAGGGAGATAAGGCTGGCAGCTTCAATCTCCTCCATTGCAACTTCAAG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAAG
*
95582714 AAGATAAGATCCACCATAATTCGTAGCTTCAATCTGTTCCACTGCAAC-TCTAGAGAAATAAGAT
66 AAGATAAGATCCACCATAATTCGTAGCTTCAATCTGTTCCACTACAACTTC-AGAGAAATAAGAT
95582778 TCGCTTTCTTCAGT
130 TCGCTTTCTTCAGT
*
95582792 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTACTCCACTGCAACTTC-AG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAAG
* * * * *
95582856 AAAGATAAGATCCGCCATTATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAAATAAGAT
66 -AAGATAAGATCCACCATAATTCGTAGCTTCAATCTGTTCCACTACAACTTCAGAGAAATAAGAT
95582921 TCGCTTTCTTCAGT
130 TCGCTTTCTTCAGT
* * * * * * * * * *
95582935 TTGTTCGGTTGAAACTTCAAGGAGATAAGGCCGGTGGCTTCAATCTACTTCAC-GTAACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAAG
95582999 AAGATAAGATCCACCAT
66 AAGATAAGATCCACCAT
95583016 CTTCAATCTA
Statistics
Matches: 196, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
142 25 0.13
143 169 0.86
144 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (143 bp):
CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAAG
AAGATAAGATCCACCATAATTCGTAGCTTCAATCTGTTCCACTACAACTTCAGAGAAATAAGATT
CGCTTTCTTCAGT
Done.