Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 319 of 378
Found at i:97014830 original size:47 final size:48
Alignment explanation
Indices: 97014751--97014892 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
97014741 GCTTTATCAT
* *
97014751 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
97014800 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
97014847 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
97014893 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:97014851 original size:71 final size:72
Alignment explanation
Indices: 97014750--97014893 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
97014740 TGCTTTATCA
*
97014750 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
97014815 GCCCTTT
66 GCCCTTT
* * **
97014822 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
97014885 AGCCCTTT
65 AGCCCTTT
97014893 T
1 T
97014894 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:97014968 original size:20 final size:20
Alignment explanation
Indices: 97014943--97015003 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
97014933 TTATGATTAC
97014943 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97014963 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
97014983 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
97015003 A
1 A
97015004 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97015078 original size:25 final size:25
Alignment explanation
Indices: 97015046--97015093 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97015036 ATACATAAAC
* * *
97015046 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97015071 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97015094 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97019031 original size:27 final size:27
Alignment explanation
Indices: 97018991--97019102 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
97018981 AGGAAACGTC
*
97018991 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
97019018 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
97019045 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
97019073 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
97019099 CTGG
1 CTGG
97019103 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
26 9 0.12
27 47 0.63
28 18 0.24
29 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:97019101 original size:54 final size:54
Alignment explanation
Indices: 97018991--97019102 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
97018981 AGGAAACGTC
* *
97018991 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
97019045 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
97019099 CTGG
1 CTGG
97019103 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:97025387 original size:24 final size:24
Alignment explanation
Indices: 97025355--97025425 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
97025345 CTGTCAGGAG
97025355 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
97025379 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
97025403 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
97025426 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:97025437 original size:48 final size:48
Alignment explanation
Indices: 97025355--97025448 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
97025345 CTGTCAGGAG
** * *
97025355 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
97025403 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
97025449 AACAAGAGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:97030151 original size:19 final size:20
Alignment explanation
Indices: 97030107--97030152 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
97030097 AAAAGCTATA
* *
97030107 TGTTTATACGGATGAGTTAC
1 TGTTTATACGAATGAATTAC
*
97030127 TG-TTAT-CGAATGAATTAT
1 TGTTTATACGAATGAATTAC
97030145 TGTTTATA
1 TGTTTATA
97030153 TAATTGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 11 0.52
19 8 0.38
20 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (20 bp):
TGTTTATACGAATGAATTAC
Found at i:97031715 original size:15 final size:15
Alignment explanation
Indices: 97031691--97031727 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
97031681 AATCCTGACA
*
97031691 TTGTAAACTATGTTT
1 TTGTATACTATGTTT
97031706 TTGTATACTATGTTT
1 TTGTATACTATGTTT
*
97031721 TCGTATA
1 TTGTATA
97031728 GTAATGGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.24, C:0.08, G:0.14, T:0.54
Consensus pattern (15 bp):
TTGTATACTATGTTT
Found at i:97044845 original size:26 final size:27
Alignment explanation
Indices: 97044785--97044837 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
97044775 CAAATTAATT
*
97044785 AAATGACTGTTATGCCCCTATGAGGTA
1 AAATGACTGTTATGCCCCTATGAGATA
* *
97044812 AAATGACTGTTATTCCCTTATGAGAT
1 AAATGACTGTTATGCCCCTATGAGAT
97044838 GTATGACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (27 bp):
AAATGACTGTTATGCCCCTATGAGATA
Found at i:97051000 original size:19 final size:20
Alignment explanation
Indices: 97050956--97051001 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
97050946 AAAAGCTATG
* *
97050956 TGTTTATACAGATGAGTTAC
1 TGTTTATACAAATGAATTAC
*
97050976 TG-TTAT-CAAATGAATTAT
1 TGTTTATACAAATGAATTAC
97050994 TGTTTATA
1 TGTTTATA
97051002 TAATTGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 11 0.52
19 8 0.38
20 2 0.10
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTTTATACAAATGAATTAC
Found at i:97052343 original size:26 final size:26
Alignment explanation
Indices: 97052308--97052366 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
97052298 GGACAAATTG
* * *
97052308 ATTGACATTGAATGCTTAATGCTTGA
1 ATTGAGATTGAATGATGAATGCTTGA
97052334 ATTGAGATTGAATGATGAATGCTTGA
1 ATTGAGATTGAATGATGAATGCTTGA
97052360 ATTGAGA
1 ATTGAGA
97052367 AAATGTAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
ATTGAGATTGAATGATGAATGCTTGA
Found at i:97058553 original size:93 final size:93
Alignment explanation
Indices: 97058440--97058611 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
97058430 TGCCCATAAG
*
97058440 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
97058504 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
97058533 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97058598 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97058612 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97058606 original size:46 final size:46
Alignment explanation
Indices: 97058433--97058608 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
97058423 TGTAACCTGC
* *
97058433 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
97058479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
97058529 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97058572 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97058609 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97065572 original size:45 final size:46
Alignment explanation
Indices: 97065508--97065682 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
97065498 TGTAACCCGC
*
97065508 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
97065553 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
97065603 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
97065646 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97065683 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:97065673 original size:93 final size:92
Alignment explanation
Indices: 97065515--97065685 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
97065505 CGCCCATAAG
*
97065515 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97065580 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
97065607 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97065672 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
97065686 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97067207 original size:2 final size:2
Alignment explanation
Indices: 97067200--97067236 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
97067190 TCATACATTC
97067200 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97067237 CATTTTGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97087413 original size:23 final size:23
Alignment explanation
Indices: 97087361--97087451 Score: 146
Period size: 23 Copynumber: 3.9 Consensus size: 23
97087351 TACCAATATA
* *
97087361 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCATCAGAGCTTACTG-TT
97087385 TCAGCTCATCAGAGCTTACTGTT
1 TCAGCTCATCAGAGCTTACTGTT
97087408 TCAGCTCATCAGAGCTTACTGTT
1 TCAGCTCATCAGAGCTTACTGTT
*
97087431 TCAGCTCATTAGAGCTTACTG
1 TCAGCTCATCAGAGCTTACTG
97087452 CCCATCAACT
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
23 45 0.70
24 19 0.30
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (23 bp):
TCAGCTCATCAGAGCTTACTGTT
Found at i:97089009 original size:26 final size:26
Alignment explanation
Indices: 97088974--97089032 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
97088964 GGACAAATTG
* * *
97088974 ATTGACATTGAATGCTTAATGCTTGA
1 ATTGAGATTGAATGATGAATGCTTGA
97089000 ATTGAGATTGAATGATGAATGCTTGA
1 ATTGAGATTGAATGATGAATGCTTGA
97089026 ATTGAGA
1 ATTGAGA
97089033 AAATGTACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
ATTGAGATTGAATGATGAATGCTTGA
Found at i:97094645 original size:2 final size:2
Alignment explanation
Indices: 97094638--97094676 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
97094628 TCATACATTC
97094638 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97094677 CATTTTGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97113717 original size:23 final size:24
Alignment explanation
Indices: 97113667--97113721 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
97113657 TCAGCTCGCA
*
97113667 AGAGCTTACTATTTTCAACTCGTC
1 AGAGCTTACTATTTTCAACTCATC
* *
97113691 AGAGCTTACTA-TTTCAGCTCATT
1 AGAGCTTACTATTTTCAACTCATC
97113714 AGAGCTTA
1 AGAGCTTA
97113722 TTGCCCATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 17 0.61
24 11 0.39
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (24 bp):
AGAGCTTACTATTTTCAACTCATC
Found at i:97114058 original size:25 final size:25
Alignment explanation
Indices: 97114030--97114077 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
97114020 ATAATGGATG
*
97114030 ATTACATGCACTTGTGTGACTAAAT
1 ATTACATGCACTTATGTGACTAAAT
97114055 ATTACATGCACTTATGTGACTAA
1 ATTACATGCACTTATGTGACTAA
97114078 CTCGTTGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (25 bp):
ATTACATGCACTTATGTGACTAAAT
Found at i:97119244 original size:47 final size:46
Alignment explanation
Indices: 97119187--97119316 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 46
97119177 ACAATCAATA
* *
97119187 AGTACTTATACCATGGCCCATAGACAAATCAAGGTAACAT-ATCCCGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAAC-TCATCCC-G
* * *
97119234 AGTACCTATACCATGGCCTATAGCCAAATCAAGGTAACTCCTTTCCG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACT-CATCCCG
* * *
97119281 AATACCTAAACCATGGCCCGTAGCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
97119317 TTATTCGTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 1 0.01
47 68 0.94
48 3 0.04
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (46 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCG
Found at i:97120887 original size:22 final size:22
Alignment explanation
Indices: 97120853--97120894 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97120843 TATATGACAG
* * *
97120853 CAACGGTAGTGTGCGGCAGTGA
1 CAACGGCAATGTGCAGCAGTGA
97120875 CAACGGCAATGTGCAGCAGT
1 CAACGGCAATGTGCAGCAGT
97120895 AAAGTTGGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.36, T:0.17
Consensus pattern (22 bp):
CAACGGCAATGTGCAGCAGTGA
Found at i:97128270 original size:63 final size:63
Alignment explanation
Indices: 97128171--97128298 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
97128161 GTTTCATCTC
97128171 TTCAAGCATCTTCAAGGGGTGGTCGGCCATGAATTGAGGAAATTGAGCTGATTTTTGCTCAAT
1 TTCAAGCATCTTCAAGGGGTGGTCGGCCATGAATTGAGGAAATTGAGCTGATTTTTGCTCAAT
97128234 TTCAAGCATCTTCAAGGGGTGGTCGGCCATGAATTGAGGAAATTGAGCTGATTTTTGCTCAAT
1 TTCAAGCATCTTCAAGGGGTGGTCGGCCATGAATTGAGGAAATTGAGCTGATTTTTGCTCAAT
97128297 TT
1 TT
97128299 AAGTGCCACA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (63 bp):
TTCAAGCATCTTCAAGGGGTGGTCGGCCATGAATTGAGGAAATTGAGCTGATTTTTGCTCAAT
Found at i:97141996 original size:21 final size:21
Alignment explanation
Indices: 97141964--97142015 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
97141954 TATAAGAAAA
97141964 ATATATATAATAATATAAACC
1 ATATATATAATAATATAAACC
97141985 ATATA-ATAAATAATATAAA--
1 ATATATAT-AATAATATAAACC
97142004 A-ATATATAATAA
1 ATATATATAATAA
97142016 AATGTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 8 0.28
19 3 0.10
20 2 0.07
21 16 0.55
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATATATAATAATATAAACC
Found at i:97142047 original size:17 final size:17
Alignment explanation
Indices: 97141961--97142057 Score: 52
Period size: 17 Copynumber: 5.2 Consensus size: 17
97141951 ACTTATAAGA
*
97141961 AAAATATATATAATAATAT
1 AAAATATA-ATAA-AAAAT
97141980 AAACCATATAATAAATAATAT
1 AAA--ATATAATAAA-AA-AT
97142001 AAAA-ATATATAATAAAATGT
1 AAAATATA-ATAA-AAAA--T
* *
97142021 AATATGTAATAAAAAAT
1 AAAATATAATAAAAAAT
* *
97142038 AAAATATAATGAAATAT
1 AAAATATAATAAAAAAT
97142055 AAA
1 AAA
97142058 TACTATAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
17 17 0.27
18 4 0.06
19 15 0.24
20 14 0.23
21 12 0.19
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAATATAATAAAAAAT
Found at i:97142134 original size:15 final size:14
Alignment explanation
Indices: 97142114--97142201 Score: 56
Period size: 15 Copynumber: 6.2 Consensus size: 14
97142104 GTAATAATAC
97142114 ATAATAAAAA-AT-
1 ATAATAAAAATATA
* *
97142126 ATAATAATATTATA
1 ATAATAAAAATATA
97142140 TATAAT-AAAATATA
1 -ATAATAAAAATATA
* ** *
97142154 ATAACATGTAATTTA
1 ATAATA-AAAATATA
*
97142169 AAAATAAAAATAATA
1 ATAATAAAAAT-ATA
97142184 ATAATAAATAATATA
1 ATAATAAA-AATATA
97142199 ATA
1 ATA
97142202 TAATGGATGT
Statistics
Matches: 55, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
12 8 0.15
13 6 0.11
14 9 0.16
15 29 0.53
16 3 0.05
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (14 bp):
ATAATAAAAATATA
Found at i:97143849 original size:44 final size:44
Alignment explanation
Indices: 97143800--97144088 Score: 285
Period size: 44 Copynumber: 6.5 Consensus size: 44
97143790 CAAGAACACC
* * * * *
97143800 AATCTGTTATCTTTGGTATGCTCTCTACCAATACAGAGATGCTA
1 AATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
97143844 AATCTGCTGTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
97143888 AATCTGTTATCTTCGATCTGCTATCTGCCAATACAGGGATGCCA
1 AATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* * * *
97143932 AATCTGCTATCTTGGATCTGCTCTCCGCCAATACAGAGATACCA
1 AATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* * ** * * *
97143976 AATCTATTATCTTCGATTTGCT-TCAACGTAA-ACACGTGAAAGCCA
1 AATCTGTTATCTTCGATCTGCTCTCTGC-CAATACA-GAG-ATGCCA
** * * *
97144021 AATCAACTACATTTTCGATCTGCTCCCTGCCAATACAGAGATGCCA
1 AATC-TGT-TATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
*
97144067 AATCTGGTATCTTCGATCTGCT
1 AATCTGTTATCTTCGATCTGCT
97144089 TCGATGTAAA
Statistics
Matches: 195, Mismatches: 43, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
43 6 0.03
44 150 0.77
45 8 0.04
46 10 0.05
47 16 0.08
48 5 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (44 bp):
AATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
Found at i:97143950 original size:88 final size:87
Alignment explanation
Indices: 97143800--97144090 Score: 323
Period size: 88 Copynumber: 3.3 Consensus size: 87
97143790 CAAGAACACC
* * * * * *
97143800 AATCTGTTATCTTTGGTATGCTCTCTACCAATACAGAGATGCTAAATCTGCTGTCTTCGATCTGC
1 AATCTGTTATCTTCGATCTGCT-TCTACCAATACAGGGATGCCAAATCTGCTATCTTCGATCTGC
97143865 TCTCTGCCAATACAGAGATGCCA
65 TCTCTGCCAATACAGAGATGCCA
* *
97143888 AATCTGTTATCTTCGATCTGCTATCTGCCAATACAGGGATGCCAAATCTGCTATCTTGGATCTGC
1 AATCTGTTATCTTCGATCTGCT-TCTACCAATACAGGGATGCCAAATCTGCTATCTTCGATCTGC
* *
97143953 TCTCCGCCAATACAGAGATACCA
65 TCTCTGCCAATACAGAGATGCCA
* * * * * * ** *
97143976 AATCTATTATCTTCGATTTGCTTCAACGTAA-ACACGTGAAAGCCAAATCAACTACATTTTCGAT
1 AATCTGTTATCTTCGATCTGCTTCTAC-CAATACA-G-GGATGCCAAATCTGCT--ATCTTCGAT
*
97144040 CTGCTCCCTGCCAATACAGAGATGCCA
61 CTGCTCTCTGCCAATACAGAGATGCCA
*
97144067 AATCTGGTATCTTCGATCTGCTTC
1 AATCTGTTATCTTCGATCTGCTTC
97144091 GATGTAAACA
Statistics
Matches: 170, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
87 6 0.04
88 100 0.59
89 12 0.07
91 52 0.31
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (87 bp):
AATCTGTTATCTTCGATCTGCTTCTACCAATACAGGGATGCCAAATCTGCTATCTTCGATCTGCT
CTCTGCCAATACAGAGATGCCA
Found at i:97144059 original size:91 final size:89
Alignment explanation
Indices: 97143853--97144106 Score: 282
Period size: 91 Copynumber: 2.8 Consensus size: 89
97143843 AAATCTGCTG
* ** *
97143853 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTATCTGC-C
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCT-TCAACGT
* * **
97143917 AATACA-G-GGATGCCAAATCTGCTA
65 AA-ACACGTGAAAGCCAAATCAACTA
* * * *
97143941 TCTTGGATCTGCTCTCC-GCCAATACAGAGATACCAAATCTATTATCTTCGATTTGCTTCAACGT
1 TCTTCGATCTGCTC-CCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTTCAACGT
97144005 AAACACGTGAAAGCCAAATCAACTACA
65 AAACACGTGAAAGCCAAATCAACT--A
* * * *
97144032 TTTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGGTATCTTCGATCTGCTTCGATGTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTTCAACGTA
*
97144097 AACACATGAA
66 AACACGTGAA
97144107 GGTCAGATCT
Statistics
Matches: 138, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
87 6 0.04
88 53 0.38
89 13 0.09
90 2 0.01
91 64 0.46
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (89 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTTCAACGTA
AACACGTGAAAGCCAAATCAACTA
Found at i:97147618 original size:2 final size:2
Alignment explanation
Indices: 97147611--97147640 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
97147601 TTATTGTCAT
97147611 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97147641 AAAAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97148694 original size:19 final size:15
Alignment explanation
Indices: 97148648--97148689 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
97148638 TATCTGTTTT
*
97148648 ATTGAATTTATATTG
1 ATTGAAATTATATTG
97148663 ATTGAAATTATATTG
1 ATTGAAATTATATTG
97148678 ATTG-AATTATAT
1 ATTGAAATTATAT
97148690 AATATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:97149110 original size:21 final size:21
Alignment explanation
Indices: 97149086--97149168 Score: 130
Period size: 21 Copynumber: 4.0 Consensus size: 21
97149076 GTCATATTTC
97149086 AGGCACCTCGTGTGTCGTATT
1 AGGCACCTCGTGTGTCGTATT
97149107 AGGCACCTCGTGTGTCGTATT
1 AGGCACCTCGTGTGTCGTATT
*
97149128 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTATT
* **
97149149 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCGTGTGTCGTAT
97149169 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.14, C:0.22, G:0.28, T:0.36
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTATT
Found at i:97149139 original size:42 final size:42
Alignment explanation
Indices: 97149063--97149168 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
97149053 TTTATCGATG
* * *
97149063 AGGCACTTTATGTGTCATATTTCAGGCACCTCGTGTGTCGTATT
1 AGGCACCTCATGTGTCGTA-TT-AGGCACCTCGTGTGTCGTATT
* *
97149107 AGGCACCTCGTGTGTCGTATTAGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTATTAGGCACCTCGTGTGTCGTATT
* *
97149149 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCATGTGTCGTAT
97149169 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 37 0.69
43 2 0.04
44 15 0.28
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (42 bp):
AGGCACCTCATGTGTCGTATTAGGCACCTCGTGTGTCGTATT
Found at i:97154259 original size:2 final size:2
Alignment explanation
Indices: 97154252--97154285 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97154242 TTATTGTTAT
97154252 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97154286 AAAAAAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97155101 original size:2 final size:2
Alignment explanation
Indices: 97155086--97155121 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
97155076 TAAATTGAAT
*
97155086 TA TA TA T- TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97155122 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97155126 original size:2 final size:2
Alignment explanation
Indices: 97155121--97155158 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
97155111 TATATATATA
97155121 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97155159 AATGAGATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97155332 original size:15 final size:15
Alignment explanation
Indices: 97155314--97155370 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
97155304 TATCTGTTTT
97155314 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
97155329 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
97155344 ATTGAATTTATATTG
1 ATTGAATTTATATTG
97155359 ATTGAA-TTATAT
1 ATTGAATTTATAT
97155371 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:97155349 original size:30 final size:28
Alignment explanation
Indices: 97155310--97155368 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
97155300 TGAATATCTG
97155310 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
97155339 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
97155368 T
1 T
97155369 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:97155776 original size:23 final size:22
Alignment explanation
Indices: 97155750--97155845 Score: 117
Period size: 21 Copynumber: 4.5 Consensus size: 22
97155740 TGGCACTTTA
*
97155750 TGTGTCATATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
97155773 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
97155794 TGTGTCGTATT-AGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
* * **
97155815 TGTGTCGT-TTTAGGCACTTTA
1 TGTGTCGTATTCAGGCACCTCG
97155836 TGTGTCGTAT
1 TGTGTCGTAT
97155846 ACTGATCAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.03
21 54 0.82
22 2 0.03
23 8 0.12
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.38
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:97159656 original size:46 final size:46
Alignment explanation
Indices: 97159475--97159656 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
97159465 TTTGACATGA
* * * * * *
97159475 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
97159521 TGCCATGGTATCTTTCAATCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97159567 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97159613 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
97159657 AGAGCACACT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 118 0.97
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:97161799 original size:11 final size:11
Alignment explanation
Indices: 97161783--97161834 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
97161773 TATACTAAAT
97161783 AAATAATAATA
1 AAATAATAATA
*
97161794 AAATAAT-ATT
1 AAATAATAATA
* *
97161804 AAATATCTCATA
1 AAATA-ATAATA
*
97161816 AAATATTAATA
1 AAATAATAATA
97161827 AAATAATA
1 AAATAATA
97161835 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:97168841 original size:33 final size:33
Alignment explanation
Indices: 97168799--97168864 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
97168789 ATGTTAGGGC
97168799 ACTACTTCCCGAATTCCCAAATATCAAAACATT
1 ACTACTTCCCGAATTCCCAAATATCAAAACATT
97168832 ACTACTTCCCGAATTCCCAAATATCAAAACATT
1 ACTACTTCCCGAATTCCCAAATATCAAAACATT
97168865 GCCTTACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.30, G:0.03, T:0.27
Consensus pattern (33 bp):
ACTACTTCCCGAATTCCCAAATATCAAAACATT
Found at i:97169600 original size:21 final size:21
Alignment explanation
Indices: 97169568--97169622 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
97169558 TATAAGCAAA
*
97169568 ATATATATAATAATATAAACC
1 ATATATATAATAAAATAAACC
97169589 ATATA-ATAAATAAAATAAA--
1 ATATATAT-AATAAAATAAACC
97169608 A-ATATATAATAAAAT
1 ATATATATAATAAAAT
97169623 GTAATATGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 11 0.35
19 3 0.10
20 2 0.06
21 15 0.48
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (21 bp):
ATATATATAATAAAATAAACC
Found at i:97169617 original size:22 final size:21
Alignment explanation
Indices: 97169565--97169650 Score: 76
Period size: 20 Copynumber: 4.4 Consensus size: 21
97169555 ACTTATAAGC
*
97169565 AAAATATAT-AT-AATAATAT
1 AAAATATATAATAAATAAAAT
**
97169584 AAACCATATAATAAATAAAAT
1 AAAATATATAATAAATAAAAT
97169605 AAAA-ATAT-AT-AATAAAAT
1 AAAATATATAATAAATAAAAT
** *
97169623 GTAATATGTAATAAA-AAAAT
1 AAAATATATAATAAATAAAAT
97169643 AAAATATA
1 AAAATATA
97169651 ATGAAATATA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
18 10 0.19
19 12 0.23
20 18 0.35
21 12 0.23
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATATATAATAAATAAAAT
Found at i:97169637 original size:30 final size:30
Alignment explanation
Indices: 97169602--97169659 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97169592 TAATAAATAA
* * *
97169602 AATAAAAATATATAATAAAATGTAATATGT
1 AATAAAAAAATAAAATAAAATGAAATATGT
*
97169632 AATAAAAAAATAAAATATAATGAAATAT
1 AATAAAAAAATAAAATAAAATGAAATAT
97169660 AAATACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (30 bp):
AATAAAAAAATAAAATAAAATGAAATATGT
Found at i:97178853 original size:2 final size:2
Alignment explanation
Indices: 97178848--97178872 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97178838 TTTCTTTTCT
97178848 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97178873 TTGCCCATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97179416 original size:152 final size:147
Alignment explanation
Indices: 97179044--97179428 Score: 485
Period size: 146 Copynumber: 2.6 Consensus size: 147
97179034 AAAGTTGTGA
* * * *
97179044 TTTTTTT--AAAGAGAAATTTTCGATTTTAACAAATAAAAATTTGTTTTTTTAA-TTATTTTAAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAATTGTTTTTTTAAGTTATTTTAAA
* * * * *
97179106 GGAAAGTTT-AAATTCTTAAAACAAAGTTTTGATTTTTTTTCAACTACTTCAAAGTAAAAGCTTT
66 GGAAAGTTTAAAATT-TTAAAACAAAATTTCGATTTTTTTCCAACTACTTCAAAATAAAAGCTTC
97179170 AATCTTTAAGAAAAATAT
130 AATCTTTAAGAAAAATAT
* * * * *
97179188 TTTTTTTTAAAGGAGAAAGTTTAGATTTT-GAAAATTAAAAATATATTTTTTT-AGTTATTTTAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAAT-TGTTTTTTTAAGTTATTTTAA
* * *
97179251 AGGAAAGTTTAAAATTTGAAAATAAAATTTCGATTTTTTTCCAACTATTTCAAAATAAAAGCTTC
65 AGGAAAGTTTAAAATTTTAAAACAAAATTTCGATTTTTTTCCAACTACTTCAAAATAAAAGCTTC
97179316 AATCTTTTAAGAAAAATAGT
130 AATC-TTTAAGAAAAATA-T
* *
97179336 ATTTTTTTAAAAAAAGAGAGAGTTTAGATTTTAAAAAATAAAAAATTGTTTTTTTAAGTCATTTT
1 -TTTTTTT--AAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAATTGTTTTTTTAAGTTATTTT
*
97179401 AAAGGAAATTTTAAAATTTTAAAACAAA
63 AAAGGAAAGTTTAAAATTTTAAAACAAA
97179429 TGTGAGCATT
Statistics
Matches: 203, Mismatches: 26, Indels: 16
0.83 0.11 0.07
Matches are distributed among these distances:
144 7 0.03
145 10 0.05
146 89 0.44
147 18 0.09
148 1 0.00
149 7 0.03
151 27 0.13
152 44 0.22
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (147 bp):
TTTTTTTAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAATTGTTTTTTTAAGTTATTTTAAA
GGAAAGTTTAAAATTTTAAAACAAAATTTCGATTTTTTTCCAACTACTTCAAAATAAAAGCTTCA
ATCTTTAAGAAAAATAT
Found at i:97180737 original size:41 final size:40
Alignment explanation
Indices: 97180643--97180788 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
97180633 CAATATCTCA
** * * *
97180643 CACACTAAGTGTTGTACATAGCCAAAGCTATCTCAAATCG
1 CACACTAAGTGTCATATATAGCCGAAGCTATCTCGAATCG
* * *
97180683 CACACTAAGTGTCATATATAGCCGAAGCTATCTTGATTTTG
1 CACACTAAGTGTCATATATAGCCGAAGCTATCTCGA-ATCG
*
97180724 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGTCATATATAGCCGAAGCTATCTCGAATCG
*
97180764 CACACTAAGTGCCATATATAGCCGA
1 CACACTAAGTGTCATATATAGCCGA
97180789 TTTGTTGTCA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 56 0.61
41 36 0.39
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (40 bp):
CACACTAAGTGTCATATATAGCCGAAGCTATCTCGAATCG
Found at i:97181023 original size:21 final size:23
Alignment explanation
Indices: 97180998--97181039 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
97180988 AATTAACTCG
*
97180998 TTCAAT-C-AAATATTTATTAAA
1 TTCAATCCAAAATATATATTAAA
97181019 TTCAATCCAAAATATATATTA
1 TTCAATCCAAAATATATATTA
97181040 GGGATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (23 bp):
TTCAATCCAAAATATATATTAAA
Found at i:97182005 original size:30 final size:30
Alignment explanation
Indices: 97181964--97182023 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
97181954 CTTACTAGTG
* *
97181964 AATAGGTTAGGGCACTGCTTTCTCATAGCT
1 AATACGTTAGGGCACTGCATTCTCATAGCT
97181994 AATACGTTAGGGCACTGCATTCTCATAGCT
1 AATACGTTAGGGCACTGCATTCTCATAGCT
97182024 TCCTCAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (30 bp):
AATACGTTAGGGCACTGCATTCTCATAGCT
Found at i:97187038 original size:151 final size:151
Alignment explanation
Indices: 97186764--97187066 Score: 597
Period size: 151 Copynumber: 2.0 Consensus size: 151
97186754 CAGATTTTCC
97186764 AATTTGAGAGCAGTTAGCACATATCTGAGCATATAGATTGACATTGTTTCTTTTCAGATGCTAGC
1 AATTTGAGAGCAGTTAGCACATATCTGAGCATATAGATTGACATTGTTTCTTTTCAGATGCTAGC
97186829 AAAAGCTATCCAGAGAAGTTTCCTTGTTTCAGCTGACATGGCACATGCCCTTCACCCAAATTACA
66 AAAAGCTATCCAGAGAAGTTTCCTTGTTTCAGCTGACATGGCACATGCCCTTCACCCAAATTACA
97186894 TGGTATGTTGTTGGCTAACAA
131 TGGTATGTTGTTGGCTAACAA
97186915 AATTTGAGAGCAGTTAGCACATATCTGAGCATATAGATTGACATTGTTTCTTTTCAGATGCTAGC
1 AATTTGAGAGCAGTTAGCACATATCTGAGCATATAGATTGACATTGTTTCTTTTCAGATGCTAGC
*
97186980 AAAAGCTATCCAGAGAAGTTTCCTTGTTTCGGCTGACATGGCACATGCCCTTCACCCAAATTACA
66 AAAAGCTATCCAGAGAAGTTTCCTTGTTTCAGCTGACATGGCACATGCCCTTCACCCAAATTACA
97187045 TGGTATGTTGTTGGCTAACAA
131 TGGTATGTTGTTGGCTAACAA
97187066 A
1 A
97187067 TCATAACTCG
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 151 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (151 bp):
AATTTGAGAGCAGTTAGCACATATCTGAGCATATAGATTGACATTGTTTCTTTTCAGATGCTAGC
AAAAGCTATCCAGAGAAGTTTCCTTGTTTCAGCTGACATGGCACATGCCCTTCACCCAAATTACA
TGGTATGTTGTTGGCTAACAA
Found at i:97195979 original size:20 final size:20
Alignment explanation
Indices: 97195956--97196002 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
97195946 GTGAATTAGG
*
97195956 TTAAATAACAAAGAATAGAT
1 TTAAACAACAAAGAATAGAT
* * *
97195976 TTAAACAATAATGAATTGAT
1 TTAAACAACAAAGAATAGAT
97195996 TTAAACA
1 TTAAACA
97196003 GAAAGACAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (20 bp):
TTAAACAACAAAGAATAGAT
Found at i:97196019 original size:21 final size:21
Alignment explanation
Indices: 97195993--97196067 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
97195983 ATAATGAATT
*
97195993 GATTTAAACAGAAAGACAATC
1 GATTTAAACATAAAGACAATC
* *
97196014 GATTTAAACATAAAGATAATT
1 GATTTAAACATAAAGACAATC
*
97196035 TATTTAAACATAAAGACAATC
1 GATTTAAACATAAAGACAATC
*
97196056 GATTCAAA-ATAA
1 GATTTAAACATAA
97196068 GTAGTATTCT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
20 4 0.09
21 42 0.91
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.27
Consensus pattern (21 bp):
GATTTAAACATAAAGACAATC
Found at i:97196050 original size:42 final size:42
Alignment explanation
Indices: 97195973--97196067 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
97195963 ACAAAGAATA
*
97195973 GATTTAAACA-ATAATGAATTGATTTAAACAGAAAGACAATC
1 GATTTAAACATAAAATGAATTGATTTAAACAGAAAGACAATC
* *
97196014 GATTTAAACATAAAGAT-AATTTATTTAAACATAAAGACAATC
1 GATTTAAACATAAA-ATGAATTGATTTAAACAGAAAGACAATC
*
97196056 GATTCAAA-ATAA
1 GATTTAAACATAA
97196068 GTAGTATTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 14 0.29
42 32 0.67
43 2 0.04
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (42 bp):
GATTTAAACATAAAATGAATTGATTTAAACAGAAAGACAATC
Found at i:97196168 original size:31 final size:31
Alignment explanation
Indices: 97196130--97196193 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
97196120 GAAATTCAAA
97196130 CTATTCGTCACCTATTTTCGCTTTTCCCGTT
1 CTATTCGTCACCTATTTTCGCTTTTCCCGTT
97196161 CTATTCGTCACCTATTTTCGCTTTTCCCGTT
1 CTATTCGTCACCTATTTTCGCTTTTCCCGTT
97196192 CT
1 CT
97196194 TTTTTATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.09, C:0.33, G:0.09, T:0.48
Consensus pattern (31 bp):
CTATTCGTCACCTATTTTCGCTTTTCCCGTT
Found at i:97197437 original size:24 final size:24
Alignment explanation
Indices: 97197389--97197439 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
97197379 AAACCTTGTA
* *
97197389 TTCATCTTTATCTCAATCCTTGTC
1 TTCATCTTTATCTCAACCCTCGTC
*
97197413 TTCATCTTTATCTCCACCCTCGTC
1 TTCATCTTTATCTCAACCCTCGTC
97197437 TTC
1 TTC
97197440 TTTTTCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.35, G:0.04, T:0.47
Consensus pattern (24 bp):
TTCATCTTTATCTCAACCCTCGTC
Found at i:97200838 original size:16 final size:16
Alignment explanation
Indices: 97200819--97200886 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
97200809 TAATATAAAC
97200819 AAAA-TAAAATAATTTT
1 AAAATTAAAA-AATTTT
*
97200835 AAAAATTAAAAAACTTT
1 -AAAATTAAAAAATTTT
* *
97200852 AAAATTAAATTAA-TTG
1 AAAATTAAA-AAATTTT
*
97200868 AAAA-TGAAAAATTTT
1 AAAATTAAAAAATTTT
97200883 AAAA
1 AAAA
97200887 ATTTTCCTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
14 2 0.05
15 9 0.21
16 15 0.36
17 11 0.26
18 5 0.12
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (16 bp):
AAAATTAAAAAATTTT
Found at i:97206744 original size:22 final size:22
Alignment explanation
Indices: 97206718--97206759 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
97206708 AAATGATCAA
97206718 AATTAA-TCAAAATTTATTATAG
1 AATTAAGT-AAAATTTATTATAG
*
97206740 AATTAAGTAAATTTTATTAT
1 AATTAAGTAAAATTTATTAT
97206760 GTTAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (22 bp):
AATTAAGTAAAATTTATTATAG
Found at i:97206772 original size:27 final size:27
Alignment explanation
Indices: 97206742--97206795 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
97206732 TATTATAGAA
*
97206742 TTAAGTA-AATTTTATTATGTTAATAAT
1 TTAAGTACAATTTAATTAT-TTAATAAT
*
97206769 TTAAGTACAATTTAATTATTTTATAAT
1 TTAAGTACAATTTAATTATTTAATAAT
97206796 AATTATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (27 bp):
TTAAGTACAATTTAATTATTTAATAAT
Found at i:97207840 original size:56 final size:56
Alignment explanation
Indices: 97207754--97207866 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
97207744 TATAGTAGGA
97207754 TATAAAATTGGAATGTTCCAATGCTTTCTCAAGGTGACAAGGAAATGTTTATTAAG
1 TATAAAATTGGAATGTTCCAATGCTTTCTCAAGGTGACAAGGAAATGTTTATTAAG
*
97207810 TATAAAATTGGAATGTTCCAATGCTTTCTCAAGGTGATAAGGAAATGTTTATTAAG
1 TATAAAATTGGAATGTTCCAATGCTTTCTCAAGGTGACAAGGAAATGTTTATTAAG
97207866 T
1 T
97207867 CGATTTCACA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (56 bp):
TATAAAATTGGAATGTTCCAATGCTTTCTCAAGGTGACAAGGAAATGTTTATTAAG
Found at i:97210315 original size:19 final size:19
Alignment explanation
Indices: 97210291--97210329 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
97210281 ATCTCATTTC
97210291 ATTTA-TTGCATTTAGATTA
1 ATTTATTTGCATTTA-ATTA
*
97210310 ATTTATTTTCATTTAATTA
1 ATTTATTTGCATTTAATTA
97210329 A
1 A
97210330 CTTACTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (19 bp):
ATTTATTTGCATTTAATTA
Found at i:97214557 original size:17 final size:17
Alignment explanation
Indices: 97214537--97214571 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97214527 TGTCAAGGCG
97214537 GTTTCACGACACCCTCT
1 GTTTCACGACACCCTCT
*
97214554 GTTTCACGATACCCTCT
1 GTTTCACGACACCCTCT
97214571 G
1 G
97214572 GCTTATGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.37, G:0.14, T:0.31
Consensus pattern (17 bp):
GTTTCACGACACCCTCT
Found at i:97214908 original size:19 final size:19
Alignment explanation
Indices: 97214886--97214943 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 19
97214876 AAGTAAAAAC
*
97214886 ATGATGAAATTGCTTTCAT
1 ATGATTAAATTGCTTTCAT
97214905 ATGATTAAATTGCTTTCAT
1 ATGATTAAATTGCTTTCAT
*
97214924 ACGATTAAATTGCTTTCAT
1 ATGATTAAATTGCTTTCAT
97214943 A
1 A
97214944 CGAGCTCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (19 bp):
ATGATTAAATTGCTTTCAT
Found at i:97214944 original size:19 final size:19
Alignment explanation
Indices: 97214892--97214946 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
97214882 AAACATGATG
*
97214892 AAATTGCTTTCATATGATT
1 AAATTGCTTTCATACGATT
97214911 AAATTGCTTTCATACGATT
1 AAATTGCTTTCATACGATT
97214930 AAATTGCTTTCATACGA
1 AAATTGCTTTCATACGA
97214947 GCTCTTTAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (19 bp):
AAATTGCTTTCATACGATT
Found at i:97221853 original size:13 final size:13
Alignment explanation
Indices: 97221835--97221860 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97221825 ACTTGTTCGT
97221835 TGCATACACATTA
1 TGCATACACATTA
97221848 TGCATACACATTA
1 TGCATACACATTA
97221861 ATTCCCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TGCATACACATTA
Found at i:97238635 original size:35 final size:35
Alignment explanation
Indices: 97238585--97238681 Score: 149
Period size: 35 Copynumber: 2.8 Consensus size: 35
97238575 TCTCTGTTTA
* *
97238585 GCGTGTTTCGGTTGGACTAGATCTTATGAGCATCG
1 GCGTGTTTCGATTGGACTAGCTCTTATGAGCATCG
97238620 GCGTGTTTCGATTGGACTAGCTCTTATGAGCATCG
1 GCGTGTTTCGATTGGACTAGCTCTTATGAGCATCG
** *
97238655 ATGTGTTTCGATTAGACTAGCTCTTAT
1 GCGTGTTTCGATTGGACTAGCTCTTAT
97238682 TAGTATCCAG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.37
Consensus pattern (35 bp):
GCGTGTTTCGATTGGACTAGCTCTTATGAGCATCG
Found at i:97239291 original size:18 final size:18
Alignment explanation
Indices: 97239268--97239302 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97239258 TGTGATTGAA
97239268 GTACTTCTGATAGGTATG
1 GTACTTCTGATAGGTATG
97239286 GTACTTCTGATAGGTAT
1 GTACTTCTGATAGGTAT
97239303 ATTGGATAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (18 bp):
GTACTTCTGATAGGTATG
Found at i:97245443 original size:16 final size:15
Alignment explanation
Indices: 97245417--97245447 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
97245407 AAATGGGGAA
97245417 TAAATTAAAATTAAT
1 TAAATTAAAATTAAT
97245432 TAAATTATAAATTAAT
1 TAAATTA-AAATTAAT
97245448 ACTCATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATTAAAATTAAT
Found at i:97260734 original size:35 final size:35
Alignment explanation
Indices: 97260688--97260756 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
97260678 AGTGTCATAT
97260688 TTTGTGGCATGTGTACATAAGGTGTCTTGCGGTAG
1 TTTGTGGCATGTGTACATAAGGTGTCTTGCGGTAG
*
97260723 TTTGTGGCATGTGTACATAAGGTGTCTTGTGGTA
1 TTTGTGGCATGTGTACATAAGGTGTCTTGCGGTA
97260757 CAAACTAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.10, G:0.33, T:0.39
Consensus pattern (35 bp):
TTTGTGGCATGTGTACATAAGGTGTCTTGCGGTAG
Found at i:97272276 original size:32 final size:32
Alignment explanation
Indices: 97272200--97272263 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
97272190 AAGCTTTTTT
*
97272200 TAAAAAAAA-TT-AATAGCTCAGTGACTTAAA
1 TAAAAAAAATTTAAATAGCTCAGTGACATAAA
*
97272230 TAAAAAAAATTTAAATAGTTCAGTGACATAAA
1 TAAAAAAAATTTAAATAGCTCAGTGACATAAA
97272262 TA
1 TA
97272264 GAAATTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 9 0.30
31 2 0.07
32 19 0.63
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.28
Consensus pattern (32 bp):
TAAAAAAAATTTAAATAGCTCAGTGACATAAA
Found at i:97274495 original size:18 final size:18
Alignment explanation
Indices: 97274465--97274499 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
97274455 GAAGTGCATT
97274465 TAATATTATTATTTAAAG
1 TAATATTATTATTTAAAG
97274483 TAAT-TTATCTATTTAAA
1 TAATATTAT-TATTTAAA
97274500 CTCCTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TAATATTATTATTTAAAG
Found at i:97274531 original size:21 final size:21
Alignment explanation
Indices: 97274505--97274558 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 21
97274495 TTAAACTCCT
97274505 TTTTATTTATAA-TTTACATTA
1 TTTTATTT-TAATTTTACATTA
97274526 TTTTATTTTAATTTTACA-TA
1 TTTTATTTTAATTTTACATTA
97274546 TTATTAATTTTAA
1 TT-TT-ATTTTAA
97274559 ATCATACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.23
21 16 0.53
22 7 0.23
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTATTTTAATTTTACATTA
Found at i:97283353 original size:21 final size:21
Alignment explanation
Indices: 97283304--97283421 Score: 75
Period size: 21 Copynumber: 5.7 Consensus size: 21
97283294 TAATCGGAAG
* *
97283304 CTCATAGGAGTTGAAC-GAAAA
1 CTCATAAGAGTTAAACTG-AAA
* * * *
97283325 CCCATAAGGGTTAAATTGAAG
1 CTCATAAGAGTTAAACTGAAA
*
97283346 CTCATAAGAGCTAAACTGAAA
1 CTCATAAGAGTTAAACTGAAA
*
97283367 C-C-TAGAGGGTTGAAA-TGAAA
1 CTCATA-AGAGTT-AAACTGAAA
* *
97283387 CTCATATGAGTT-AACTGAAG
1 CTCATAAGAGTTAAACTGAAA
97283407 CTCATAAGAGCTTAA
1 CTCATAAGAG-TTAA
97283422 CGGAAAGCAA
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
19 4 0.06
20 24 0.33
21 40 0.56
22 4 0.06
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (21 bp):
CTCATAAGAGTTAAACTGAAA
Found at i:97283368 original size:42 final size:41
Alignment explanation
Indices: 97283280--97283414 Score: 100
Period size: 42 Copynumber: 3.3 Consensus size: 41
97283270 TGCTAATCGA
* * * *
97283280 AAACCCGTAAGGGTT-AATCGGAAGCTCATAGGAGTTGAAC-G
1 AAACCCATAAGGGTTAAAT-TGAAGCTCATAAGAG-TAAACTG
97283321 AAAACCCATAAGGGTTAAATTGAAGCTCATAAGAGCTAAACTG
1 -AAACCCATAAGGGTTAAATTGAAGCTCATAAGAG-TAAACTG
* * *
97283364 AAA-CC-TAGAGGGTTGAAA-TGAAACTCATATGAGTTAACTG
1 AAACCCATA-AGGGTT-AAATTGAAGCTCATAAGAGTAAACTG
* *
97283404 AAGCTCATAAG
1 AAACCCATAAG
97283415 AGCTTAACGG
Statistics
Matches: 77, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
40 10 0.13
41 24 0.31
42 39 0.51
43 4 0.05
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (41 bp):
AAACCCATAAGGGTTAAATTGAAGCTCATAAGAGTAAACTG
Found at i:97283405 original size:20 final size:21
Alignment explanation
Indices: 97283341--97283427 Score: 65
Period size: 20 Copynumber: 4.2 Consensus size: 21
97283331 AGGGTTAAAT
* *
97283341 TGAAGCTCATAAGAGCTAAAC
1 TGAAACTCATAAGAGCTTAAC
* *
97283362 TGAAAC-C-T-AGAGGGTTGAAA
1 TGAAACTCATAAGA-GCTT-AAC
*
97283382 TGAAACTCATATGAG-TTAAC
1 TGAAACTCATAAGAGCTTAAC
*
97283402 TGAAGCTCATAAGAGCTTAAC
1 TGAAACTCATAAGAGCTTAAC
*
97283423 GGAAA
1 TGAAA
97283428 GCAAACACGA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
18 3 0.06
19 3 0.06
20 24 0.48
21 16 0.32
22 2 0.04
23 2 0.04
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (21 bp):
TGAAACTCATAAGAGCTTAAC
Found at i:97300808 original size:3 final size:3
Alignment explanation
Indices: 97300795--97300829 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
97300785 TAAACACAAA
97300795 TCT TCCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT T-CT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
97300830 TTTTTCCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:97302919 original size:19 final size:19
Alignment explanation
Indices: 97302895--97302951 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
97302885 TAATTTTAAA
97302895 ATAATAATTATATAAAAAC
1 ATAATAATTATATAAAAAC
*
97302914 ATAAT-ATTTTATTAAAAAC
1 ATAATAATTATA-TAAAAAC
97302933 ATAA-AATTAATAATAAAAA
1 ATAATAATT-AT-ATAAAAA
97302952 AATCATCTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 5 0.16
19 19 0.59
20 7 0.22
21 1 0.03
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAATAATTATATAAAAAC
Found at i:97315647 original size:18 final size:18
Alignment explanation
Indices: 97315626--97315672 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
97315616 ATTTAGAGAG
*
97315626 TTGAGAGAATAGAAATAT
1 TTGAGAGAATAGAAAGAT
*
97315644 TTGAGAAAATAGAAAGAT
1 TTGAGAGAATAGAAAGAT
97315662 TTGAGAGAATA
1 TTGAGAGAATA
97315673 AGATGTGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (18 bp):
TTGAGAGAATAGAAAGAT
Found at i:97317930 original size:17 final size:17
Alignment explanation
Indices: 97317908--97317942 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97317898 AGATCAAGCA
97317908 TATCATAAATAAATCCT
1 TATCATAAATAAATCCT
97317925 TATCATAAATAAATCCT
1 TATCATAAATAAATCCT
97317942 T
1 T
97317943 CAAATATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (17 bp):
TATCATAAATAAATCCT
Found at i:97318506 original size:2 final size:2
Alignment explanation
Indices: 97318499--97318528 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
97318489 CGAATCATAC
97318499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97318529 GCATATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97319429 original size:158 final size:158
Alignment explanation
Indices: 97319145--97319440 Score: 380
Period size: 158 Copynumber: 1.9 Consensus size: 158
97319135 GCCGACATTA
* * ** * *
97319145 TCGAGCTGTTAACACTAGCTTCGAATCAGGGTTGCTAACACTAAATTAGTTCAATGTTGCTAATA
1 TCGAGCTGCTAACACTAGCTTCGAATCAAGGTTGCTAACACTAAATTAGCACAATGCTGCTAACA
* * * *
97319210 TTAGTTTCAGAGAATCCACAACATATGTTGGATCTCAAGTCATCGAATTCATCCTCGATCACAAC
66 CTAGATTCAGAGAATCCAAAACATATGTTGGATCTCAAGTCATCGAATTCATCCTCAATCACAAC
*
97319275 ACCTATTTGTTTATACAGGTTGACAGTT
131 ACCCATTTGTTTATACAGGTTGACAGTT
* * * * *
97319303 TCGAGTTGCTAACACTAGCTTC-AGATTAAGGTTGCTAACATTAACTTAGCACGATGCTGCTAAC
1 TCGAGCTGCTAACACTAGCTTCGA-ATCAAGGTTGCTAACACTAAATTAGCACAATGCTGCTAAC
* * * *
97319367 ACTAGATTCAGAGAATCCAAAACATATGTTGGATCTTAAGTCATTGTATTTATCC-CTAATCACA
65 ACTAGATTCAGAGAATCCAAAACATATGTTGGATCTCAAGTCATCGAATTCATCCTC-AATCACA
97319431 ACACCCATTT
129 ACACCCATTT
97319441 TTCATTTTTC
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.02
158 114 0.98
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (158 bp):
TCGAGCTGCTAACACTAGCTTCGAATCAAGGTTGCTAACACTAAATTAGCACAATGCTGCTAACA
CTAGATTCAGAGAATCCAAAACATATGTTGGATCTCAAGTCATCGAATTCATCCTCAATCACAAC
ACCCATTTGTTTATACAGGTTGACAGTT
Found at i:97319536 original size:32 final size:32
Alignment explanation
Indices: 97319498--97319564 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
97319488 TATATATCGA
97319498 ATAGTAATTCATATACTTCTTAACCTTGTAAC
1 ATAGTAATTCATATACTTCTTAACCTTGTAAC
* *
97319530 ATAGTAATTCATATATTTCTTAACCTTTTAAC
1 ATAGTAATTCATATACTTCTTAACCTTGTAAC
97319562 ATA
1 ATA
97319565 ATCATATGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.04, T:0.43
Consensus pattern (32 bp):
ATAGTAATTCATATACTTCTTAACCTTGTAAC
Found at i:97323169 original size:25 final size:26
Alignment explanation
Indices: 97323119--97323344 Score: 287
Period size: 27 Copynumber: 8.6 Consensus size: 26
97323109 CTCAAATTGA
*
97323119 TAAAATGACTATTTTACCCTTATGGGG
1 TAAAATGACTGTTTT-CCCTTATGGGG
*
97323146 TAAAATGACTG-TTGCCCTTATGGGG
1 TAAAATGACTGTTTTCCCTTATGGGG
*
97323171 TAAAATGACTGTTTTTTCCTTATGGGG
1 TAAAATGACTG-TTTTCCCTTATGGGG
97323198 TAAAATGACTGTTTTTCCCTTATGGGG
1 TAAAATGACTG-TTTTCCCTTATGGGG
*
97323225 TAAAATGACTGTTTTTCTCTTATGGGG
1 TAAAATGACTG-TTTTCCCTTATGGGG
*
97323252 TAAAATGACTG-TTGCCCTTATGGGG
1 TAAAATGACTGTTTTCCCTTATGGGG
** *
97323277 TAAAATGGTTG-TTGCCCTTATGGGG
1 TAAAATGACTGTTTTCCCTTATGGGG
*
97323302 TAAAATGACTGTTTTTTCGCTTATGGGG
1 TAAAATGACTG--TTTTCCCTTATGGGG
*
97323330 TAAAATGAATGTTTT
1 TAAAATGACTGTTTT
97323345 GTCCTTTTAT
Statistics
Matches: 179, Mismatches: 15, Indels: 11
0.87 0.07 0.05
Matches are distributed among these distances:
25 66 0.37
26 6 0.03
27 85 0.47
28 22 0.12
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (26 bp):
TAAAATGACTGTTTTCCCTTATGGGG
Found at i:97323358 original size:27 final size:27
Alignment explanation
Indices: 97323144--97323394 Score: 128
Period size: 27 Copynumber: 9.5 Consensus size: 27
97323134 ACCCTTATGG
* * **
97323144 GGTAAAATGACTG--TTGCCCTTATGG
1 GGTAAAATGACTGTTTTGTCCTTTTAT
* * **
97323169 GGTAAAATGACTGTTTTTTCCTTATGG
1 GGTAAAATGACTGTTTTGTCCTTTTAT
*
97323196 GGTAAAATGACTGTTTT-TCC-CTTAT
1 GGTAAAATGACTGTTTTGTCCTTTTAT
*
97323221 GGGGTAAAATGACTGTTTT-T-CTCTTAT
1 --GGTAAAATGACTGTTTTGTCCTTTTAT
* * **
97323248 GGGGTAAAATGACTG--TTGCCCTTATGG
1 --GGTAAAATGACTGTTTTGTCCTTTTAT
* * **
97323275 GGTAAAATG---GTTGTTGCCCTTATGG
1 GGTAAAATGACTGTT-TTGTCCTTTTAT
* * **
97323300 GGTAAAATGACTGTTTTTTCGCTTATGG
1 GGTAAAATGACTGTTTTGTC-CTTTTAT
*
97323328 GGTAAAATGAATGTTTTGTCCTTTTAT
1 GGTAAAATGACTGTTTTGTCCTTTTAT
* * *
97323355 GGTAAGATGACTATTTTGCCCTTTTAT
1 GGTAAAATGACTGTTTTGTCCTTTTAT
*
97323382 GGTAAGATGACTG
1 GGTAAAATGACTG
97323395 ATTTATCCCT
Statistics
Matches: 189, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
22 1 0.01
25 46 0.24
26 4 0.02
27 110 0.58
28 28 0.15
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGTCCTTTTAT
Found at i:97328222 original size:46 final size:46
Alignment explanation
Indices: 97328155--97328327 Score: 292
Period size: 46 Copynumber: 3.8 Consensus size: 46
97328145 AGTGTGCTCT
97328155 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97328201 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97328247 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
97328293 GTGATATGAAATGAACAAGACCATGGTTGAAAGAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
97328328 GTAGCACCCC
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97329288 original size:135 final size:137
Alignment explanation
Indices: 97329045--97329329 Score: 511
Period size: 135 Copynumber: 2.1 Consensus size: 137
97329035 CATTGGGCCT
** *
97329045 AAGCCCATTCAGGTAACAGTGGTATTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
97329110 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
97329174 CATATGC
131 CATATGC
*
97329181 AAGCCCATTTGGGTAACAGTGGTACTGGG-CAGAGCCCTTTTCAGATTATAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
97329245 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
97329310 CATATGC
131 CATATGC
97329317 AAGCCCATTTGGG
1 AAGCCCATTTGGG
97329330 GAGACTACTC
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 95 0.66
136 48 0.34
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:97329614 original size:25 final size:27
Alignment explanation
Indices: 97329577--97329629 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97329567 TCAAACATGC
97329577 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
97329603 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
97329629 A
1 A
97329630 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:97331148 original size:26 final size:26
Alignment explanation
Indices: 97331112--97331221 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
97331102 CATGAAATTC
97331112 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97331138 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97331164 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
97331190 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97331216 TTATCA
1 TTATCA
97331222 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97335207 original size:136 final size:137
Alignment explanation
Indices: 97334963--97335248 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
97334953 CATTGGGCCT
**
97334963 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
97335028 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
97335092 CATATGC
131 CATATGC
97335099 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
97335164 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
97335229 CATATGC
131 CATATGC
97335236 AAGCCCATTTGGG
1 AAGCCCATTTGGG
97335249 GAGACTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 124 0.85
137 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:97335533 original size:25 final size:27
Alignment explanation
Indices: 97335496--97335548 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97335486 TCAAACATGC
97335496 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
97335522 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
97335548 A
1 A
97335549 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:97337061 original size:26 final size:26
Alignment explanation
Indices: 97337025--97337133 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
97337015 CATGAAATTC
97337025 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97337051 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97337076 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
97337102 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97337128 TTATCA
1 TTATCA
97337134 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 24 0.30
26 56 0.70
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97337105 original size:51 final size:52
Alignment explanation
Indices: 97337025--97337133 Score: 184
Period size: 51 Copynumber: 2.1 Consensus size: 52
97337015 CATGAAATTC
97337025 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
* * *
97337076 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
97337128 TTATCA
1 TTATCA
97337134 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 47 0.87
52 7 0.13
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
Found at i:97341237 original size:2 final size:2
Alignment explanation
Indices: 97341230--97341270 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
97341220 TTATGTGATG
*
97341230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97341271 ACAAAGGAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:97341635 original size:6 final size:6
Alignment explanation
Indices: 97341624--97341654 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
97341614 ATTTATTAAT
*
97341624 TATAAA TATAAA TATAAA TATAAT TATAAA T
1 TATAAA TATAAA TATAAA TATAAA TATAAA T
97341655 GTTAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (6 bp):
TATAAA
Found at i:97341661 original size:18 final size:18
Alignment explanation
Indices: 97341617--97341665 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
97341607 TTTATATATT
*
97341617 TATTAATTATAAATATAAA
1 TATTAA-TATAATTATAAA
*
97341636 TATAAATATAATTATAAA
1 TATTAATATAATTATAAA
*
97341654 TGTTAATA-AATT
1 TATTAATATAATT
97341666 TTATGTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 4 0.15
18 17 0.65
19 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
TATTAATATAATTATAAA
Found at i:97345813 original size:62 final size:62
Alignment explanation
Indices: 97345739--97345941 Score: 379
Period size: 62 Copynumber: 3.3 Consensus size: 62
97345729 AATTAAAGAG
*
97345739 CTTTTTGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
1 CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
97345801 CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
1 CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
*
97345863 CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTAGTATTCTTACTTTATGTACTGTTTA
1 CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
97345925 CTTTATGCTTTAATGTC
1 CTTTATGCTTT-ATGTC
97345942 TGATATCTAT
Statistics
Matches: 138, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
62 133 0.96
63 5 0.04
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.49
Consensus pattern (62 bp):
CTTTATGCTTTATGTCAAATAATGTCTAATATCAGTACTATTCTTACTTTATGTACTGTTTA
Found at i:97353690 original size:55 final size:55
Alignment explanation
Indices: 97353606--97353788 Score: 276
Period size: 55 Copynumber: 3.3 Consensus size: 55
97353596 TTAAAATTTT
* * *
97353606 AAGTCATTGTTGTACACGGGCAGGCCACACGGGCATGTGCCATGGCCTTGTATTA
1 AAGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGCGCCATGGCCGTGTATTA
* * *
97353661 AAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTGCACCATGGCCGTGTATTA
1 AAGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGCGCCATGGCCGTGTATTA
* * *
97353716 AAGTCAGTGTTGTACACGGGCAAGCCACACGGGCATACGCCATGGCCGTGTTTTA
1 AAGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGCGCCATGGCCGTGTATTA
*
97353771 AAGTCAGTGTTGCACACG
1 AAGTCAGTGTTGTACACG
97353789 AGAAGGGCAC
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 115 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (55 bp):
AAGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGCGCCATGGCCGTGTATTA
Found at i:97355093 original size:70 final size:70
Alignment explanation
Indices: 97355016--97355150 Score: 252
Period size: 70 Copynumber: 1.9 Consensus size: 70
97355006 TATCGATATA
*
97355016 GTTTTGGCATTCTGCCATTTTCAAAATTTTGGACACAAGTCAATTCATATCGATACCTTTATAAA
1 GTTTTGGCATTCTGCCATTTTCAAAATTTTGGAAACAAGTCAATTCATATCGATACCTTTATAAA
97355081 GTATC
66 GTATC
*
97355086 GTTTTGGCATTTTGCCATTTTCAAAATTTTGGAAACAAGTCAATTCATATCGATACCTTTATAAA
1 GTTTTGGCATTCTGCCATTTTCAAAATTTTGGAAACAAGTCAATTCATATCGATACCTTTATAAA
97355151 ATATTGTTCA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (70 bp):
GTTTTGGCATTCTGCCATTTTCAAAATTTTGGAAACAAGTCAATTCATATCGATACCTTTATAAA
GTATC
Found at i:97363781 original size:20 final size:20
Alignment explanation
Indices: 97363736--97363785 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
97363726 CTAAAAATAA
97363736 GGTTTTCCTAAAATGTGAAC
1 GGTTTTCCTAAAATGTGAAC
* *
97363756 TGTTTTCCTTAAATGTG-AC
1 GGTTTTCCTAAAATGTGAAC
*
97363775 GGTTTTTCTAA
1 GGTTTTCCTAA
97363786 GCTTCCACTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (20 bp):
GGTTTTCCTAAAATGTGAAC
Found at i:97370425 original size:19 final size:20
Alignment explanation
Indices: 97370380--97370429 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
97370370 CTAAAAACAA
*
97370380 GGTTTTCCTAAAATGTGAAC
1 GGTTTTCCTAAAACGTGAAC
* *
97370400 TGTTTTCCTTAAACGTG-AC
1 GGTTTTCCTAAAACGTGAAC
97370419 GGTTTTCCTAA
1 GGTTTTCCTAA
97370430 GCTTCTGCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (20 bp):
GGTTTTCCTAAAACGTGAAC
Found at i:97371929 original size:33 final size:33
Alignment explanation
Indices: 97371887--97371961 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
97371877 TGGCATTCAT
* * *
97371887 AGAGTAAGTCTGTTGGGTTAGTAAACACGGAAC
1 AGAGTAAGTCTGTCGGGGTAGTAAAAACGGAAC
*
97371920 AGAGTAAGTCTGTCGGGGTAGTAAAAATGGAAC
1 AGAGTAAGTCTGTCGGGGTAGTAAAAACGGAAC
97371953 AGAGTAAGT
1 AGAGTAAGT
97371962 TTACTGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.32, T:0.23
Consensus pattern (33 bp):
AGAGTAAGTCTGTCGGGGTAGTAAAAACGGAAC
Found at i:97375535 original size:43 final size:42
Alignment explanation
Indices: 97375479--97375633 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
97375469 ATATCATACA
*
97375479 ATGCCAAC-ATCCCAGATGTGGTCTTACATGCAATCACATATCG
1 ATGCC-ACTATCCCAGATGTGGTCTTACACG-AATCACATATCG
* * *
97375522 ATGCCACTGTCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCACTATCCCAGA-TGTGGTCTTACACGAATCACATATCG
* * ** **
97375563 ATGCCAATTTCCCAGACATGGTCTTACACGTAATCACATATTA
1 ATGCCACTATCCCAGATGTGGTCTTACACG-AATCACATATCG
97375606 ATGCCAAC-ATCCCAGATGTGGTCTTACA
1 ATGCC-ACTATCCCAGATGTGGTCTTACA
97375634 TGAGAAAACA
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 27 0.30
42 18 0.20
43 44 0.48
44 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCACTATCCCAGATGTGGTCTTACACGAATCACATATCG
Found at i:97375577 original size:41 final size:43
Alignment explanation
Indices: 97375498--97375621 Score: 135
Period size: 41 Copynumber: 2.9 Consensus size: 43
97375488 TCCCAGATGT
* * *
97375498 GGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGCAATCAAATATCGATGCCAATGTCCCAGACAG
* *
97375541 GGTCTTACACG-AATCAAATA-CGATGCCAATTTCCCAGACAT
1 GGTCTTACACGCAATCAAATATCGATGCCAATGTCCCAGACAG
* * ** **
97375582 GGTCTTACACGTAATCACATATTAATGCCAACATCCCAGA
1 GGTCTTACACGCAATCAAATATCGATGCCAATGTCCCAGA
97375622 TGTGGTCTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 29 0.42
42 16 0.23
43 24 0.35
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGCAATCAAATATCGATGCCAATGTCCCAGACAG
Found at i:97377836 original size:48 final size:48
Alignment explanation
Indices: 97377765--97378082 Score: 320
Period size: 48 Copynumber: 6.6 Consensus size: 48
97377755 AGGGTAAATT
* * * * *
97377765 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGTG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCATG
* * * * * * *
97377813 GCCGACGCTATGTCCCAGACATGGTTTTACACTAGCTCTCGTCTCAAT-
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC-ATG
* * * * * *
97377861 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCATG
* * * * *
97377909 G-CAATGTCATGTTCCAAACATGGTCTTACACTAGGTCTCATAACATT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCATG
*
97377956 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCATG
* * * * *
97378004 GCTGATGCTATGTTCAAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCATG
97378052 GCCGATGCCATGTTCCAAACATGGTCTTACA
1 GCCGATGCCATGTTCCAAACATGGTCTTACA
97378083 AACATGGTCT
Statistics
Matches: 233, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
47 44 0.19
48 187 0.80
49 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCATG
Found at i:97378086 original size:14 final size:14
Alignment explanation
Indices: 97378067--97378096 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
97378057 TGCCATGTTC
97378067 CAAACATGGTCTTA
1 CAAACATGGTCTTA
97378081 CAAACATGGTCTTA
1 CAAACATGGTCTTA
97378095 CA
1 CA
97378097 CTGGCTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (14 bp):
CAAACATGGTCTTA
Found at i:97378121 original size:62 final size:62
Alignment explanation
Indices: 97378020--97378144 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
97378010 GCTATGTTCA
* *
97378020 AAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCCAAACATGGTCTTAC
1 AAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATATTCCAAACATGGTCTTAC
*
97378082 AAACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCCATATTCCAAACATGGTCTTAC
1 AAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATATTCCAAACATGGTCTTAC
97378144 A
1 A
97378145 CTAGCACACA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (62 bp):
AAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATATTCCAAACATGGTCTTAC
Found at i:97380544 original size:2 final size:2
Alignment explanation
Indices: 97380537--97380567 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
97380527 CTTAGTGTTG
97380537 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97380568 GTCTGTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97380576 original size:2 final size:2
Alignment explanation
Indices: 97380571--97380596 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97380561 TATATATGTC
97380571 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
97380597 CAAATGGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97381230 original size:12 final size:12
Alignment explanation
Indices: 97381215--97381277 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
97381205 TGTTATCAAT
97381215 TTATTATTATAA
1 TTATTATTATAA
**
97381227 TTATTATTATGGT
1 TTATTATTAT-AA
*
97381240 TTTTTATT-TAA
1 TTATTATTATAA
*
97381251 ATATTATTATTAA
1 TTATTATTA-TAA
97381264 -TATTATTAT-A
1 TTATTATTATAA
97381274 TTAT
1 TTAT
97381278 GAAATAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:97381735 original size:3 final size:3
Alignment explanation
Indices: 97381727--97381778 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
97381717 ATGAATTAAA
* * *
97381727 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAC TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
97381771 TAT TAT TA
1 TAT TAT TA
97381779 ACAAACATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:97381748 original size:16 final size:15
Alignment explanation
Indices: 97381727--97381778 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
97381717 ATGAATTAAA
97381727 TATTATTATATTATAT
1 TATTATTATA-TATAT
*
97381743 TATTATTATAATGTAT
1 TATTATTAT-ATATAT
97381759 TATTATTACTA-ATAT
1 TATTATTA-TATATAT
97381774 TATTA
1 TATTA
97381779 ACAAACATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 8 0.25
16 22 0.69
17 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (15 bp):
TATTATTATATATAT
Found at i:97382319 original size:30 final size:30
Alignment explanation
Indices: 97382279--97382337 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97382269 AGTTAAGACT
*
97382279 AAATTGAATTTAA-AG-TAGAAAATTGAATAG
1 AAATTCAATTTAATAGATA-AAAATT-AATAG
97382309 AAATTCAATTTAATAGATAAAAATTAATA
1 AAATTCAATTTAATAGATAAAAATTAATA
97382338 TTGTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 16 0.62
31 8 0.31
32 2 0.08
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (30 bp):
AAATTCAATTTAATAGATAAAAATTAATAG
Found at i:97382681 original size:70 final size:75
Alignment explanation
Indices: 97382605--97382780 Score: 193
Period size: 70 Copynumber: 2.3 Consensus size: 75
97382595 ACGTGAACAA
* *
97382605 ATTGGAAATTAAAAGTGATTTGAATT-AAGT-AATTGAATT-AT-G-AATTATGTGAATATTTGA
1 ATTGGAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATAGAAAATATGTGAATATTTGA
97382665 AA-GTATATTG
65 AATGTATATTG
* *
97382675 ATTGGAAACTAAGAGTGATTTGAATTGAATCAAATTGAATTGAATGAAGAAAATATGTGAGTATT
1 ATTGGAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AAT--AGAAAATATGTGAATATT
97382740 TGAAATGTATATTG
62 TGAAATGTATATTG
* * *
97382754 ATTGAAAAGTAATTAGTGATTTGAATT
1 ATTGGAAACTAA-AAGTGATTTGAATT
97382781 TGATTGGAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
70 25 0.28
71 2 0.02
72 9 0.10
74 2 0.02
77 1 0.01
78 18 0.20
79 18 0.20
80 13 0.15
ACGTcount: A:0.41, C:0.01, G:0.20, T:0.38
Consensus pattern (75 bp):
ATTGGAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATAGAAAATATGTGAATATTTGAA
ATGTATATTG
Found at i:97383006 original size:18 final size:17
Alignment explanation
Indices: 97382945--97383020 Score: 75
Period size: 18 Copynumber: 4.4 Consensus size: 17
97382935 AGAAAGTGGA
*
97382945 AAAGTGAATTTGAATTG
1 AAAGTGAAATTGAATTG
97382962 -AA-TGAGAATTGAATTG
1 AAAGTGA-AATTGAATTG
** *
97382978 AATTTTGAATTTGAATTG
1 AA-AGTGAAATTGAATTG
97382996 AAAGTGAAATTGACATTG
1 AAAGTGAAATTGA-ATTG
97383014 AAAGTGA
1 AAAGTGA
97383021 TTTCAAATGT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
15 3 0.06
16 11 0.23
17 9 0.19
18 22 0.46
19 3 0.06
ACGTcount: A:0.42, C:0.01, G:0.22, T:0.34
Consensus pattern (17 bp):
AAAGTGAAATTGAATTG
Found at i:97383819 original size:24 final size:25
Alignment explanation
Indices: 97383792--97383841 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
97383782 GGATATAGAA
* *
97383792 ATGAAATATATG-AAATGGCTATTG
1 ATGAAATACATGAAAATGGATATTG
*
97383816 ATGAAATGCATGAAAATGGATATTG
1 ATGAAATACATGAAAATGGATATTG
97383841 A
1 A
97383842 CATGATAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (25 bp):
ATGAAATACATGAAAATGGATATTG
Found at i:97385437 original size:46 final size:46
Alignment explanation
Indices: 97385387--97385559 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
97385377 TGGTTGAGCA
*
97385387 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
97385433 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
97385480 TCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
97385526 -CTCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
97385560 GGGGCAGGTT
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.55
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:97385543 original size:93 final size:93
Alignment explanation
Indices: 97385384--97385554 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
97385374 GGATGGTTGA
* * *
97385384 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
97385449 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
97385477 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCATTGAG
*
97385541 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
97385555 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.