Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 32 of 378
Found at i:7810079 original size:13 final size:14
Alignment explanation
Indices: 7810058--7810086 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7810048 ATTGATTAAA
7810058 AATTAAAATTAACT
1 AATTAAAATTAACT
7810072 AATT-AAATTAACT
1 AATTAAAATTAACT
7810085 AA
1 AA
7810087 AAAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAAATTAACT
Found at i:7816392 original size:22 final size:23
Alignment explanation
Indices: 7816366--7816413 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
7816356 TTTAAAAGAG
*
7816366 TAATCCTATTAATATTAAAT-AT
1 TAATCCTATAAATATTAAATAAT
*
7816388 TAATCTTATAAATATTAAATAAT
1 TAATCCTATAAATATTAAATAAT
7816411 TAA
1 TAA
7816414 AATTTACGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (23 bp):
TAATCCTATAAATATTAAATAAT
Found at i:7820030 original size:23 final size:21
Alignment explanation
Indices: 7819983--7820030 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
7819973 GCCACTTGCC
7819983 TGTAAAAAGAAGGAAAAGACA
1 TGTAAAAAGAAGGAAAAGACA
7820004 -GTAAATAAGAGAGGAAAA-AGCA
1 TGTAAA-AAGA-AGGAAAAGA-CA
7820026 TGTAA
1 TGTAA
7820031 CAAGGCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.22
21 5 0.22
22 9 0.39
23 4 0.17
ACGTcount: A:0.58, C:0.04, G:0.25, T:0.12
Consensus pattern (21 bp):
TGTAAAAAGAAGGAAAAGACA
Found at i:7820350 original size:23 final size:23
Alignment explanation
Indices: 7820320--7820363 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7820310 TACGGTGGCC
7820320 GGTGCGGCAGACGATGACCGGCT
1 GGTGCGGCAGACGATGACCGGCT
7820343 GGTGCGGCAGACGATGACCGG
1 GGTGCGGCAGACGATGACCGG
7820364 AGCTAGGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.25, G:0.45, T:0.11
Consensus pattern (23 bp):
GGTGCGGCAGACGATGACCGGCT
Found at i:7821208 original size:22 final size:22
Alignment explanation
Indices: 7821148--7821209 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
7821138 TATATACATA
* *
7821148 TATATATATATTTTATATTATG
1 TATATATATATATTATGTTATG
* * *
7821170 TATATATTTTTAATATGTTATG
1 TATATATATATATTATGTTATG
7821192 TATATATATATATTATGT
1 TATATATATATATTATGT
7821210 ACATACTTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (22 bp):
TATATATATATATTATGTTATG
Found at i:7821224 original size:22 final size:20
Alignment explanation
Indices: 7821161--7821264 Score: 54
Period size: 22 Copynumber: 5.0 Consensus size: 20
7821151 ATATATATTT
7821161 TATATTATGTATATATTTTTAA
1 TATATTATGTA-ATA-TTTTAA
* *
7821183 TATGTTATGT-ATA-TAT-A
1 TATATTATGTAATATTTTAA
7821200 TATATTATGTACATACTTTTAA
1 TATATTATGTA-ATA-TTTTAA
* *
7821222 TATTATCATGTATTCATTTTTAA
1 TA-TATTATGTAAT-A-TTTTAA
*
7821245 AATA-TATGTATATATATTTA
1 TATATTATGTA-ATAT-TTTA
7821265 TGTAATATTA
Statistics
Matches: 63, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
17 10 0.16
18 2 0.03
19 3 0.05
20 4 0.06
21 12 0.19
22 16 0.25
23 16 0.25
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (20 bp):
TATATTATGTAATATTTTAA
Found at i:7821587 original size:20 final size:20
Alignment explanation
Indices: 7821551--7821594 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7821541 CCTAGCATAT
*
7821551 ATACTATGTATACATTCTTA
1 ATACTATGCATACATTCTTA
*
7821571 ATACTATAGCATA-ATTCTTT
1 ATACTAT-GCATACATTCTTA
7821591 ATAC
1 ATAC
7821595 CGTATTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (20 bp):
ATACTATGCATACATTCTTA
Found at i:7821734 original size:19 final size:18
Alignment explanation
Indices: 7821680--7821734 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
7821670 ATTATACATG
*
7821680 TATATATATATATACTTTT
1 TATATATAT-TATATTTTT
*
7821699 TATATATAGTATCATTTTT
1 TATATATATTAT-ATTTTT
7821718 TATATATCATTATATTT
1 TATATAT-ATTATATTT
7821735 ATCATCATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 3 0.10
19 24 0.77
20 4 0.13
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATATTATATTTTT
Found at i:7821804 original size:15 final size:14
Alignment explanation
Indices: 7821775--7821808 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
7821765 GCTTATTATT
7821775 TTATTTTAACATTA
1 TTATTTTAACATTA
*
7821789 TTATTTATATCATTA
1 TTATTT-TAACATTA
7821804 TTATT
1 TTATT
7821809 ACTATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTTTAACATTA
Found at i:7824055 original size:35 final size:35
Alignment explanation
Indices: 7823985--7824055 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
7823975 TAACCTTCCG
***
7823985 CTACTATCAGCTAATCTGGACAAGAAATTTGCATA
1 CTACTATCAGCTAATCTGGACAAGAAATCCACATA
*
7824020 CTACTATCAGCTGATCTGGACATA-AAATCCACATA
1 CTACTATCAGCTAATCTGGACA-AGAAATCCACATA
7824055 C
1 C
7824056 CTACACATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.27
Consensus pattern (35 bp):
CTACTATCAGCTAATCTGGACAAGAAATCCACATA
Found at i:7831668 original size:16 final size:17
Alignment explanation
Indices: 7831643--7831685 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7831633 GTTTTTTTAA
*
7831643 ATATTACTTTAATTTGT
1 ATATTGCTTTAATTTGT
*
7831660 -TATTGCTTTCATTTGT
1 ATATTGCTTTAATTTGT
7831676 ATAATTGCTT
1 AT-ATTGCTT
7831686 CTGGAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 1 0.05
18 7 0.32
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATTGCTTTAATTTGT
Found at i:7838920 original size:64 final size:64
Alignment explanation
Indices: 7838851--7838971 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
7838841 ACACATCTAA
* * * * * *
7838851 TTAGGAGTATTTGATTCAGTTCGATCATAGCATCCTAATTATTTGACATAAACATCATATTTAG
1 TTAGGAGCATTAGATTCAGTTCAATCACAACATCCTAATCATTTGACATAAACATCATATTTAG
* * *
7838915 TTAGGAGCATTAGATTCATTTTAATCACAACATCCTAATCATTTGGCATAAACATCA
1 TTAGGAGCATTAGATTCAGTTCAATCACAACATCCTAATCATTTGACATAAACATCA
7838972 AGTCTACAGA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (64 bp):
TTAGGAGCATTAGATTCAGTTCAATCACAACATCCTAATCATTTGACATAAACATCATATTTAG
Found at i:7839230 original size:44 final size:43
Alignment explanation
Indices: 7839071--7839232 Score: 126
Period size: 44 Copynumber: 3.7 Consensus size: 43
7839061 AGACTACAAA
* * *
7839071 CCTTATCTCCCTGATGTTGCAGTGGAGTAGGTTAAAGTGACAGG
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTCACA-G
* ** * * *
7839115 CCTTATATCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGAAAAA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTC--ACAG
* * * *** * * *
7839160 TCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCACTAG
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTCAC-AG
7839204 CCTTATCTCCCTGAAGTTGCAGTGGAGTA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTA
7839233 AGTTCAAGAT
Statistics
Matches: 84, Mismatches: 31, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
43 1 0.01
44 54 0.64
45 27 0.32
46 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTCACAG
Found at i:7839460 original size:148 final size:145
Alignment explanation
Indices: 7839157--7839587 Score: 454
Period size: 147 Copynumber: 2.9 Consensus size: 145
7839147 CGAAGACGAA
* * * * * *
7839157 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCACTAGCCTTATCTCCCTGAAGTT
1 AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG-CCCAAGCCTTATCTCTCTGAGGTA
* * * * * * *
7839222 GCAGTGGAGTAAGTTCAAGA-T-ATAGTCTTATCTTTCTAAGGCAGTAA-GAAAGTAGACTGAAG
65 GAAG-AGAGTAAGTTGAAGATTGA-AGTCTTATCTTCCTGAGGTAGTAAGGAAA-CAGACTGAAG
*
7839284 ATTGAAGATTGAAAAAGGC
127 ATTGAAGATTGAAAAAGAC
*
7839303 AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCTCAAGGCCTCATCTCTCTGAGGT
1 AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-CAA-GCCTTATCTCTCTGAGGT
* *
7839368 AGAAAGAGAGCAAGTTGAAGATTGAAGTCATATCTTCCTGAGGTAGTAAGGAAACAGACTGAAGA
64 AG-AAGAGAGTAAGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAACAGACTGAAGA
*** *
7839433 TTGAAGATTGGGGATGAC
128 TTGAAGATTGAAAAAGAC
* * *
7839451 AAATTTTATCTCCATGTATTGGCAATAGAGCAGATTTAAGTCCCAAGCCTTATCTCTCTGAGGTA
1 AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG-CCCAAGCCTTATCTCTCTGAGGTA
* * ** * ** * * *
7839516 GTAAGATAGTAGGTTGGCGGTTGTGGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGAT
65 G-AAGAGAGTAAGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAACAGACTGAAGAT
7839581 TGAAGAT
129 TGAAGAT
7839588 CTTATTTCCC
Statistics
Matches: 240, Mismatches: 38, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
145 1 0.00
146 41 0.17
147 105 0.44
148 86 0.36
149 7 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (145 bp):
AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCAAGCCTTATCTCTCTGAGGTAG
AAGAGAGTAAGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAACAGACTGAAGATTG
AAGATTGAAAAAGAC
Found at i:7840221 original size:7 final size:7
Alignment explanation
Indices: 7840184--7840213 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
7840174 GTATTTCTTA
7840184 TTTATTT
1 TTTATTT
7840191 TTTATTT
1 TTTATTT
7840198 TTTATTT
1 TTTATTT
7840205 TTTATTT
1 TTTATTT
7840212 TT
1 TT
7840214 GTTTTTTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTATTT
Found at i:7840893 original size:16 final size:17
Alignment explanation
Indices: 7840868--7840910 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7840858 GTTTTTTTAA
*
7840868 ATATTACTTTAATTTGT
1 ATATTGCTTTAATTTGT
*
7840885 -TATTGCTTTCATTTGT
1 ATATTGCTTTAATTTGT
7840901 ATAATTGCTT
1 AT-ATTGCTT
7840911 CTGGAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 1 0.05
18 7 0.32
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATTGCTTTAATTTGT
Found at i:7848143 original size:64 final size:64
Alignment explanation
Indices: 7848073--7848193 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 64
7848063 ACACATCTAA
* * * *
7848073 TTAGGAGTATTTGATTCA-GTTAGATCATAGCATCCTAATTATTTGACATAAACATCATATTTAG
1 TTAGGAGCATTAGATTCATGTTA-ATCACAGCATCCTAATCATTTGACATAAACATCATATTTAG
* *
7848137 TTAGGAGCATTAGATTCATTTTAATCACAGCATCCTAATCATTTGGCATAAACATCA
1 TTAGGAGCATTAGATTCATGTTAATCACAGCATCCTAATCATTTGACATAAACATCA
7848194 AGTCTACAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
64 47 0.94
65 3 0.06
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (64 bp):
TTAGGAGCATTAGATTCATGTTAATCACAGCATCCTAATCATTTGACATAAACATCATATTTAG
Found at i:7848452 original size:44 final size:43
Alignment explanation
Indices: 7848294--7848454 Score: 106
Period size: 44 Copynumber: 3.7 Consensus size: 43
7848284 GACTACAAAC
* * * * *
7848294 CTTATCTCCCTGATGTTGCAGTAGAGCAGGTTAAAGTGACAGGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACA-GT
* * * ** * * *
7848338 CTTATATCCCTAAAGTTGCAGTGGAGTAGATCGAAGACGAAAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC--ACAGT
* * *** * *
7848383 CTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC-AGT
7848427 CTTATCTCCCTGAAGTTGCAGTGGAGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA
7848455 AGTTCAAGAT
Statistics
Matches: 81, Mismatches: 33, Indels: 6
0.68 0.28 0.05
Matches are distributed among these distances:
43 1 0.01
44 52 0.64
45 26 0.32
46 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAGT
Found at i:7848688 original size:147 final size:147
Alignment explanation
Indices: 7848379--7848956 Score: 705
Period size: 147 Copynumber: 3.9 Consensus size: 147
7848369 CGAAGACGAA
* * * * * * *
7848379 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCACTAGTCTTATCTCCCTGAAGTT
1 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTA
* * * * ** * * * *
7848444 G-CAGTGGAGCAAGTTCAAGA-T-ATAGTCTTATCTTTTTAAGGCAGTAA-GAAAGTAGACTGAA
66 GTAAG-AGAGCAGGTTGAAGATTGA-AGTCTTATCTTCCTGAGGTAGCAAGGAAA-CAGACTGAA
*
7848505 GATTGAAGATTGAAAAAGGC
128 GATTGAAGATTGGAAAAGGC
* *
7848525 AAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGATGTA
1 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTA
*
7848590 GTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAATAGACTGAAGAT
66 GTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGAT
7848655 TGAAGATTGGAAAAGGC
131 TGAAGATTGGAAAAGGC
* * *
7848672 GAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCTCAAGGCCTCATCTCTCTGAGGT
1 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCCCAA-GCCTTATCTCTCTGAGGT
* * *
7848737 AGAAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGA
65 AGTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGA
** *
7848802 TTGAAGATTGGGGATGGC
130 TTGAAGATTGGAAAAGGC
* ** *
7848820 AAATTTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCCCAAGCCTTATCTCTCTGAGGTA
1 AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTA
* * ** * ** * *
7848885 GTAAGATAGTAGGTTGGCGGTTGTGGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGAT
66 GTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGAT
7848950 TGAAGAT
131 TGAAGAT
7848957 CTTATTTCCC
Statistics
Matches: 380, Mismatches: 47, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
146 70 0.18
147 173 0.46
148 137 0.36
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (147 bp):
AAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTA
GTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGAT
TGAAGATTGGAAAAGGC
Found at i:7848916 original size:295 final size:293
Alignment explanation
Indices: 7848380--7848956 Score: 780
Period size: 295 Copynumber: 2.0 Consensus size: 293
7848370 GAAGACGAAA
* * * * *
7848380 AATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCACTAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCACAAGCCTCATCTCCCTGAAGTAG
* * ** *
7848445 CAGTGGAGCAAGTTCAAGATATAGTCTTATCTTTTTAAGGCAGTAAGAAAGTAGACTGAAGATTG
66 AAGTAGAGCAAGTTCAAGATATAGTCTTATCTTCCTAAGGCAGTAAGAAAGCAGACTGAAGATTG
7848510 AAGATTGAAAAAGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCT
131 AAGATTGAAAAAGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCT
*
7848575 TATCTCTCTGATGTAGTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGG
196 TATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGG
*
7848640 AAATAGACTGAAGATTGAAGATTGGAAAAGGCG
261 AAACAGACTGAAGATTGAAGATTGGAAAAGGCG
* * *
7848673 AATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCTCAAGGCCTCATCTCTCTGAGGTA
1 AATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCACAA-GCCTCATCTCCCTGAAGTA
* * * * *
7848738 GAAAG-AGAGCAGGTTGAAGAT-TGAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAG
65 G-AAGTAGAGCAAGTTCAAGATAT--AGTCTTATCTTCCTAAGGCAGTAAGAAAGCAGACTGAAG
*** * * * *
7848801 ATTGAAGATTGGGGATGGCAAATTTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCCCAA
127 ATTGAAGATTGAAAAAGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAA
* * ** * ** *
7848866 GCCTTATCTCTCTGAGGTAGTAAGATAGTAGGTTGGCGGTTGTGGTCTTATCTTCTTGAGGTAGC
192 GCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGC
*
7848931 AAGGAAGCAGACTGAAGATTGAAGAT
257 AAGGAAACAGACTGAAGATTGAAGAT
7848957 CTTATTTCCC
Statistics
Matches: 244, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
293 43 0.18
294 28 0.11
295 173 0.71
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (293 bp):
AATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCACAAGCCTCATCTCCCTGAAGTAG
AAGTAGAGCAAGTTCAAGATATAGTCTTATCTTCCTAAGGCAGTAAGAAAGCAGACTGAAGATTG
AAGATTGAAAAAGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCT
TATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGG
AAACAGACTGAAGATTGAAGATTGGAAAAGGCG
Found at i:7849563 original size:7 final size:7
Alignment explanation
Indices: 7849553--7849589 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
7849543 GTATTTCTTA
7849553 TTTATTT
1 TTTATTT
7849560 TTTATTT
1 TTTATTT
7849567 TTTATTT
1 TTTATTT
7849574 TTTA-TT
1 TTTATTT
7849580 TTTATTT
1 TTTATTT
7849587 TTT
1 TTT
7849590 GGATATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTATTT
Found at i:7849574 original size:13 final size:14
Alignment explanation
Indices: 7849553--7849589 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
7849543 GTATTTCTTA
7849553 TTTATTTTTTATTT
1 TTTATTTTTTATTT
7849567 TTTATTTTTTA-TT
1 TTTATTTTTTATTT
7849580 TTTATTTTTT
1 TTTATTTTTT
7849590 GGATATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTATTTTTTATTT
Found at i:7850262 original size:16 final size:17
Alignment explanation
Indices: 7850237--7850279 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7850227 GTTTTTTTAA
*
7850237 ATATTACTTTAATTTGT
1 ATATTGCTTTAATTTGT
*
7850254 -TATTGCTTTCATTTGT
1 ATATTGCTTTAATTTGT
7850270 ATAATTGCTT
1 AT-ATTGCTT
7850280 CTGGAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 1 0.05
18 7 0.32
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATTGCTTTAATTTGT
Found at i:7854228 original size:14 final size:14
Alignment explanation
Indices: 7854211--7854240 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7854201 GCATATACAT
7854211 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
*
7854225 AAAAAAAGAAAGAA
1 AAAAAAAAAAAGAA
7854239 AA
1 AA
7854241 GAAGGAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:7858712 original size:46 final size:44
Alignment explanation
Indices: 7858608--7858715 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7858598 TGTCTTTGAC
** * * *
7858608 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7858652 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7858698 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7858716 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7866095 original size:46 final size:44
Alignment explanation
Indices: 7865990--7866097 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
7865980 TGTCTTTGAC
** * * *
7865990 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7866034 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
*
7866080 ATGGGCTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7866098 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 33 0.60
46 22 0.40
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7868172 original size:3 final size:3
Alignment explanation
Indices: 7868164--7868193 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7868154 TATTAATACC
*
7868164 TAA TAA TAA TAA TAA TAA TAA GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7868194 AAACATGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:7870162 original size:53 final size:53
Alignment explanation
Indices: 7870082--7870241 Score: 221
Period size: 53 Copynumber: 3.0 Consensus size: 53
7870072 GTGACCTGAG
* * *
7870082 GCTCAACTCACCTTTCGCAATATGAGTTAATTTTTGAAAAATAGAAATTAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
* * *
7870135 GCTCAACTCACCTCTCGCAATACGAGTTGACTTTTGAAAAACAGAAATTAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
* * * *
7870188 GCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAACAACATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
7870242 CAGAAATTGA
Statistics
Matches: 93, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 90 0.97
54 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (53 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
Found at i:7870248 original size:13 final size:13
Alignment explanation
Indices: 7870221--7870254 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7870211 GAGTTGATTC
*
7870221 TTGAACAACATAAA
1 TTGAA-AACAGAAA
7870235 TTGAAAACAGAAA
1 TTGAAAACAGAAA
7870248 TTGAAAA
1 TTGAAAA
7870255 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:7870331 original size:86 final size:86
Alignment explanation
Indices: 7870185--7870413 Score: 286
Period size: 86 Copynumber: 2.7 Consensus size: 86
7870175 ACAGAAATTA
* * *
7870185 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATT
1 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATT-TTGAACAACAGAAATTGAAAACAGAAATT
*
7870250 GAAAATACCTCAG-CGTGA-CTC
65 GAAAACACCTCAGACGTGAGC-C
* * * *
7870271 GAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTG-ACGAACAGAATTTGAAAAACAGAAGT
1 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTGAAC-AACAGAAATTG-AAAACAGAAAT
*
7870335 TGAAAACAGCTCAGACGTGAGCC
64 TGAAAACACCTCAGACGTGAGCC
* *
7870358 AAGGCTTAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
1 AAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTGAACAACAGAAATTGAAAA
7870414 GGCTTAACTC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
84 2 0.02
85 12 0.10
86 57 0.46
87 36 0.29
88 15 0.12
89 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (86 bp):
AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTGAACAACAGAAATTGAAAACAGAAATTG
AAAACACCTCAGACGTGAGCC
Found at i:7870664 original size:74 final size:71
Alignment explanation
Indices: 7870413--7870765 Score: 359
Period size: 74 Copynumber: 4.9 Consensus size: 71
7870403 AGAAATTAAA
* * * * * *
7870413 AGGCTTAACTCACCTTTCGCAATATGAGTCAATTTTTCTAAACATAAACTAAAAATACCTCAGCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTT-GAAACATAAATTAAAAATACCTCAGCG
* *
7870478 TGCCCCG
65 TGACCTG
* * * * * *
7870485 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGGAACGTAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
* *
7870549 GTCTTG
66 GACCTG
*
7870555 AGGCTCAACTCACCTCTCGCAATATGAG-CTGATTTTTGAAACAACAGGAATTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTC-GATTTTTGAAAC-ATA--AATTAAAAATACCTCA
7870619 GCGTGACCTG
62 GCGTGACCTG
** * * * *
7870629 AGGCTTGACTCACCTCTCACAATATGAGTCAATTTTTTGAAACATAAACTAAAAATACCTTAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTGAAACATAAATTAAAAATACCTCAGC-
7870694 TGTGACCTG
64 -GTGACCTG
** * * *
7870703 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTG-AAACATAAATTAAAAATACCTCAG
7870766 AGTACCCAAA
Statistics
Matches: 229, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
70 53 0.23
71 12 0.05
72 45 0.20
73 6 0.03
74 102 0.45
75 11 0.05
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
GACCTG
Found at i:7895817 original size:46 final size:46
Alignment explanation
Indices: 7895750--7895921 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
7895740 AACCCGCCCC
*
7895750 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
7895796 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
7895844 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
7895889 TAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
7895922 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:7895867 original size:93 final size:93
Alignment explanation
Indices: 7895755--7895925 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
7895745 GCCCCTAAGT
* * * *
7895755 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
7895820 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7895848 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
7895913 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7895926 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7896508 original size:41 final size:41
Alignment explanation
Indices: 7896451--7896533 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7896441 CAACATGCTG
7896451 ATCACTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTA
1 ATCACTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTA
7896492 ATCACTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTA
1 ATCACTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTA
7896533 A
1 A
7896534 CATGTACTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.28, C:0.29, G:0.05, T:0.39
Consensus pattern (41 bp):
ATCACTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTA
Found at i:7902726 original size:30 final size:30
Alignment explanation
Indices: 7902658--7902729 Score: 117
Period size: 31 Copynumber: 2.4 Consensus size: 30
7902648 TTTTAAAAAG
*
7902658 TAAAAATTTAATACTATTTAATAAAATTAT
1 TAAAAAATTAATACTATTTAATAAAATTAT
*
7902688 TAAAAAAATTAATACTATTTAATAACATTAT
1 T-AAAAAATTAATACTATTTAATAAAATTAT
7902719 TAAAAAATTAA
1 TAAAAAATTAA
7902730 AAAATATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
30 11 0.28
31 28 0.72
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAAAAATTAATACTATTTAATAAAATTAT
Found at i:7904237 original size:52 final size:52
Alignment explanation
Indices: 7904160--7904421 Score: 294
Period size: 54 Copynumber: 4.9 Consensus size: 52
7904150 ATATTATACT
* * * * * *
7904160 GATGCCATATCCCGGATATGGTCTTACATGGGAGCACTTATCACTT-TTCTCC
1 GATGCCATAGCCCAGCTATGGTCTTACA-GAGATCACTTATCACTTGTTTTCC
* * *
7904212 AATGCCATAGCCCAGCTATGATCTTATACG-GATCACTTATCACTTGTTTTCC
1 GATGCCATAGCCCAGCTATGGTCTTACA-GAGATCACTTATCACTTGTTTTCC
*
7904264 GATGCCATAGCCCAGCTATGGTCTTATACAGATATCACTTATCACTTGTTTTCC
1 GATGCCATAGCCCAGCTATGGTC-T-TACAGAGATCACTTATCACTTGTTTTCC
* * * *
7904318 GATGCCATAGCCCAGCTATAGTATTATACAGATATCACTTATCACTTGTTTTTC
1 GATGCCATAGCCCAGCTATGGT-CT-TACAGAGATCACTTATCACTTGTTTTCC
* *
7904372 GATGCCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTTGTT
1 GATGCCATAGCCCAGCTATGGTC-T-TACAGAGATCACTTATCACTTGTT
7904422 GCCATGGTCC
Statistics
Matches: 185, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
51 14 0.08
52 49 0.26
53 2 0.01
54 120 0.65
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (52 bp):
GATGCCATAGCCCAGCTATGGTCTTACAGAGATCACTTATCACTTGTTTTCC
Found at i:7904307 original size:54 final size:54
Alignment explanation
Indices: 7904194--7904421 Score: 363
Period size: 54 Copynumber: 4.3 Consensus size: 54
7904184 TACATGGGAG
* * * *
7904194 CACTTATCACTT-TTCTCCAATGCCATAGCCCAGCTATGATCTTATAC-G-GAT
1 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
7904245 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
1 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
* *
7904299 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATAGTATTATACAGATAT
1 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
* *
7904353 CACTTATCACTTGTTTTTCGATGCCATAGCCCAGCTATGGTCTTATACGGATAT
1 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
7904407 CACTTATCACTTGTT
1 CACTTATCACTTGTT
7904422 GCCATGGTCC
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
51 12 0.07
52 32 0.20
53 1 0.01
54 119 0.73
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.36
Consensus pattern (54 bp):
CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGATAT
Found at i:7906205 original size:15 final size:13
Alignment explanation
Indices: 7906175--7906221 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7906165 GACTTATTTA
*
7906175 TTTTTAATTTCAT
1 TTTTTTATTTCAT
7906188 TTTTTTATTTCCACT
1 TTTTTTATTT-CA-T
7906203 TTTTTTATTT-AT
1 TTTTTTATTTCAT
7906215 TTATTTT
1 TT-TTTT
7906222 CTAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.10
13 14 0.47
14 2 0.07
15 11 0.37
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTATTTCAT
Found at i:7908009 original size:27 final size:29
Alignment explanation
Indices: 7907978--7908035 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
7907968 TCATTTTCTA
*
7907978 ATAGACTTCTA-AAAA-GTCAACATTTGC
1 ATAGACTTCAAGAAAAGGTCAACATTTGC
*
7908005 ATAGACTTCAAGAAAAGGTCCACATTTGC
1 ATAGACTTCAAGAAAAGGTCAACATTTGC
7908034 AT
1 AT
7908036 GCTATGAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 10 0.37
28 4 0.15
29 13 0.48
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (29 bp):
ATAGACTTCAAGAAAAGGTCAACATTTGC
Found at i:7909460 original size:12 final size:12
Alignment explanation
Indices: 7909443--7909467 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7909433 TTTTTTTTTT
7909443 AAATTTCATAAA
1 AAATTTCATAAA
7909455 AAATTTCATAAA
1 AAATTTCATAAA
7909467 A
1 A
7909468 CTTTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTTCATAAA
Found at i:7914354 original size:16 final size:16
Alignment explanation
Indices: 7914333--7914369 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
7914323 ATAAATATTA
7914333 ATAATTTTATTTAAAC
1 ATAATTTTATTTAAAC
7914349 ATAA-TTTATTTAAAC
1 ATAATTTTATTTAAAC
7914364 ATAATT
1 ATAATT
7914370 ACGCATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTTTATTTAAAC
Found at i:7915335 original size:12 final size:13
Alignment explanation
Indices: 7915317--7915349 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7915307 AAAAGTTAAA
7915317 AAAATGAAAA-AT
1 AAAATGAAAATAT
*
7915329 TAAATGAAAATAT
1 AAAATGAAAATAT
7915342 AAAATGAA
1 AAAATGAA
7915350 TTTTTTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (13 bp):
AAAATGAAAATAT
Found at i:7916896 original size:20 final size:22
Alignment explanation
Indices: 7916869--7916913 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
7916859 TCTCGTTTTC
*
7916869 TCCTCTTTTTCTTTTTTT-TCGA
1 TCCT-TTTTTATTTTTTTATCGA
7916891 TCCTTTTTTATTTTTTTATCGA
1 TCCTTTTTTATTTTTTTATCGA
7916913 T
1 T
7916914 TTTAAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.69
Consensus pattern (22 bp):
TCCTTTTTTATTTTTTTATCGA
Found at i:7916899 original size:22 final size:22
Alignment explanation
Indices: 7916869--7916913 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7916859 TCTCGTTTTC
*
7916869 TCCTCTTTT-TCTTTTTTTTCGA
1 TCCTCTTTTAT-TTTTTTATCGA
*
7916891 TCCTTTTTTATTTTTTTATCGA
1 TCCTCTTTTATTTTTTTATCGA
7916913 T
1 T
7916914 TTTAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.69
Consensus pattern (22 bp):
TCCTCTTTTATTTTTTTATCGA
Found at i:7918152 original size:3 final size:3
Alignment explanation
Indices: 7918075--7918210 Score: 80
Period size: 3 Copynumber: 45.7 Consensus size: 3
7918065 TATTATCAAC
* * * * * ** * *
7918075 ATT ATT TTT ATT TTT ATT ACT ATT ATC ATT TTT AAA ATT ATT GTT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
7918123 ATT A-T ATT ATTT GTT ATT -TA ATAT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
* * * * **
7918168 ATT ATT A-T ATT TTT ACT ACT ACT ACG ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7918211 CTTATTTTAT
Statistics
Matches: 100, Mismatches: 28, Indels: 10
0.72 0.20 0.07
Matches are distributed among these distances:
2 5 0.05
3 91 0.91
4 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:7918341 original size:20 final size:22
Alignment explanation
Indices: 7918305--7918344 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
7918295 CTATTTATAT
7918305 TTCTTATGTATTTATATTTTCA
1 TTCTTATGTATTTATATTTTCA
7918327 TTCTTAT-TA-TTATATTTT
1 TTCTTATGTATTTATATTTT
7918345 AGGTATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 2 0.11
22 7 0.39
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (22 bp):
TTCTTATGTATTTATATTTTCA
Found at i:7918388 original size:26 final size:26
Alignment explanation
Indices: 7918332--7918389 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7918322 TTTCATTCTT
7918332 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
7918357 -TATATTTATA-TTTAGGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
7918383 ATTATTT
1 ATTATTT
7918390 TACTATTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
24 1 0.03
25 12 0.41
26 15 0.52
27 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:7918421 original size:3 final size:3
Alignment explanation
Indices: 7918413--7918532 Score: 61
Period size: 3 Copynumber: 41.3 Consensus size: 3
7918403 TTTTTCATAC
* * * * * * **
7918413 TAT TAT TAT TAT CAC TAT TAT TAT TAT TAG CAC TAT TTT TAT TGC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
7918461 TAT T-T AAT ATAT TAT T-T T-T TAT TAC TAT CAT TAC TAT TAT TAA
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7918504 TA- TAT TGT TAT TAT TAC TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7918533 GTATTATCCT
Statistics
Matches: 84, Mismatches: 28, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
2 9 0.11
3 73 0.87
4 2 0.02
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7918434 original size:18 final size:18
Alignment explanation
Indices: 7918413--7918455 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7918403 TTTTTCATAC
*
7918413 TATTATTATTATCACTAT
1 TATTATTATTAGCACTAT
7918431 TATTATTATTAGCACTAT
1 TATTATTATTAGCACTAT
*
7918449 TTTTATT
1 TATTATT
7918456 GCTATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTATTATTAGCACTAT
Found at i:7924388 original size:25 final size:25
Alignment explanation
Indices: 7924354--7924403 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7924344 CTACAAAGTC
7924354 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
7924379 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
7924404 ACTTCTGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (25 bp):
TAATTTATCAATCCTTGAGATCATA
Found at i:7929926 original size:14 final size:15
Alignment explanation
Indices: 7929895--7929941 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
7929885 ATTGGTTAAT
*
7929895 AATAAAAAGATATAA
1 AATAAAAATATATAA
*
7929910 AATAAAAATAT-TTA
1 AATAAAAATATATAA
*
7929924 AATAAAAATTTA-AA
1 AATAAAAATATATAA
7929938 AATA
1 AATA
7929942 TTAAAGTAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
AATAAAAATATATAA
Found at i:7929991 original size:11 final size:12
Alignment explanation
Indices: 7929964--7929989 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7929954 TAAACTTATT
7929964 AAATTTATAAAA
1 AAATTTATAAAA
7929976 AAATTTATAAAA
1 AAATTTATAAAA
7929988 AA
1 AA
7929990 TTAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATTTATAAAA
Found at i:7934955 original size:18 final size:19
Alignment explanation
Indices: 7934919--7934965 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
7934909 TTTATATTAA
7934919 AAATATATTCAAACCTTA-T
1 AAATAT-TTCAAACCTTATT
**
7934938 AAATATTTCAAATTTTATT
1 AAATATTTCAAACCTTATT
7934957 AAATCATTT
1 AAAT-ATTT
7934966 TAAAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTCAAACCTTATT
Found at i:7935134 original size:17 final size:18
Alignment explanation
Indices: 7935114--7935147 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7935104 ACTTTAGGTA
7935114 ATTAATA-TCTTTTTTTT
1 ATTAATATTCTTTTTTTT
*
7935131 ATTATTATTCTTTTTTT
1 ATTAATATTCTTTTTTT
7935148 CCATCTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTAATATTCTTTTTTTT
Found at i:7936467 original size:28 final size:30
Alignment explanation
Indices: 7936422--7936488 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 30
7936412 AAACTAAATT
7936422 TTAATTTTTTTAATTTTTAAAAAATTAAA-
1 TTAATTTTTTTAATTTTTAAAAAATTAAAG
*
7936451 TTAATTTTTATT-A-TTTTAAAAGATTAAAG
1 TTAATTTTT-TTAATTTTTAAAAAATTAAAG
7936480 TGTAATTTT
1 T-TAATTTT
7936489 ATTTTTATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
28 14 0.41
29 11 0.32
30 9 0.26
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (30 bp):
TTAATTTTTTTAATTTTTAAAAAATTAAAG
Found at i:7946702 original size:51 final size:51
Alignment explanation
Indices: 7946626--7946727 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
7946616 TAGTTTTAAT
*
7946626 TAAACCATGACATTTGCATCATAAATGGATTAGTCTACATTTTTTTGCCTA
1 TAAACCATGACATTTGCATCATAAATGGATTAGTCTACATTTCTTTGCCTA
7946677 TAAACCATGACATTTGCATCATAAATGGATTAGTCTACATTTCTTTGCCTA
1 TAAACCATGACATTTGCATCATAAATGGATTAGTCTACATTTCTTTGCCTA
7946728 ACATATTCAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (51 bp):
TAAACCATGACATTTGCATCATAAATGGATTAGTCTACATTTCTTTGCCTA
Found at i:7946869 original size:11 final size:11
Alignment explanation
Indices: 7946853--7947047 Score: 148
Period size: 11 Copynumber: 17.8 Consensus size: 11
7946843 CCTAAGTATA
*
7946853 AAAACAGCAGC
1 AAAACAGCACC
*
7946864 AAAACAGCAGC
1 AAAACAGCACC
*
7946875 AAAACAGCAAC
1 AAAACAGCACC
*
7946886 AAAACAACACC
1 AAAACAGCACC
7946897 AAAACAGCACC
1 AAAACAGCACC
**
7946908 -AAACAGCATA
1 AAAACAGCACC
* *
7946918 AAAATAGCACA
1 AAAACAGCACC
7946929 AACAACAGCACC
1 AA-AACAGCACC
* *
7946941 AATACAGCAAC
1 AAAACAGCACC
7946952 AAAACAGCACC
1 AAAACAGCACC
* **
7946963 -AAACAACATA
1 AAAACAGCACC
* *
7946973 AAAATAGCACA
1 AAAACAGCACC
7946984 AAAACAGCACC
1 AAAACAGCACC
*
7946995 AAACAGCATCACC
1 AAA-A-CAGCACC
*
7947008 AGAA-A-CACC
1 AAAACAGCACC
* *
7947017 AAAATAGCACAA
1 AAAACAGCAC-C
7947029 AAAACAGCACC
1 AAAACAGCACC
7947040 -AAACAGCA
1 AAAACAGCA
7947048 GAAAAAGAGC
Statistics
Matches: 148, Mismatches: 28, Indels: 17
0.77 0.15 0.09
Matches are distributed among these distances:
9 7 0.05
10 25 0.17
11 88 0.59
12 20 0.14
13 8 0.05
ACGTcount: A:0.58, C:0.29, G:0.09, T:0.04
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:7946955 original size:55 final size:53
Alignment explanation
Indices: 7946875--7947002 Score: 193
Period size: 55 Copynumber: 2.4 Consensus size: 53
7946865 AAACAGCAGC
* * * *
7946875 AAAACAGCAACAAAACAACACCAAAACAGCACCAAACAGCATAAAAATAGCACA
1 AAAACAGC-ACCAAACAGCAACAAAACAGCACCAAACAACATAAAAATAGCACA
7946929 AACAACAGCACCAATACAGCAACAAAACAGCACCAAACAACATAAAAATAGCACA
1 AA-AACAGCACCAA-ACAGCAACAAAACAGCACCAAACAACATAAAAATAGCACA
7946984 AAAACAGCACCAAACAGCA
1 AAAACAGCACCAAACAGCA
7947003 TCACCAGAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
53 6 0.09
54 17 0.25
55 45 0.66
ACGTcount: A:0.59, C:0.29, G:0.08, T:0.04
Consensus pattern (53 bp):
AAAACAGCACCAAACAGCAACAAAACAGCACCAAACAACATAAAAATAGCACA
Found at i:7947031 original size:55 final size:55
Alignment explanation
Indices: 7946980--7947087 Score: 137
Period size: 56 Copynumber: 1.9 Consensus size: 55
7946970 ATAAAAATAG
* *
7946980 CACAAAAACAGCACCAAACAGCATCACCAGAAACACCAAAATAGCACAAAAAACAG
1 CACAAAAACAGCACCAAACAGCATCACCAAAAACACCAAAATAGCAC-AAAAATAG
* ** *
7947036 CAC-CAAACAGCAGAAAAAGAGCATCACCAAAAACACCAAAATAGCACAAAAA
1 CACAAAAACAGCA-CCAAACAGCATCACCAAAAACACCAAAATAGCACAAAAA
7947088 ACCTGCAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
55 13 0.28
56 33 0.72
ACGTcount: A:0.58, C:0.29, G:0.09, T:0.04
Consensus pattern (55 bp):
CACAAAAACAGCACCAAACAGCATCACCAAAAACACCAAAATAGCACAAAAATAG
Found at i:7947254 original size:9 final size:9
Alignment explanation
Indices: 7947231--7947270 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
7947221 ATCGAAGAAA
*
7947231 CATCATCCT
1 CATCGTCCT
*
7947240 CGTCGTCCT
1 CATCGTCCT
7947249 CATCGTCCT
1 CATCGTCCT
7947258 CATCGTCCT
1 CATCGTCCT
7947267 CATC
1 CATC
7947271 ATTCTTGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.12, C:0.45, G:0.10, T:0.33
Consensus pattern (9 bp):
CATCGTCCT
Found at i:7954965 original size:53 final size:52
Alignment explanation
Indices: 7954835--7954988 Score: 172
Period size: 51 Copynumber: 3.0 Consensus size: 52
7954825 TGAAGGAAAA
* * *
7954835 GATGTGATATATGATTCCGTATAAGACCATAGC-CGAGCTATGACAT-GGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAGCTAG-GCTATGGCATCGGTAC
* * *
7954886 AATGTGAT-TCGTG-TTCCCGTATAAGACCACAGCTAGGCTATGGCATCGGTAT
1 GATGTGATAT-GTGATT-CCGTATAAGACCATAGCTAGGCTATGGCATCGGTAC
* *
7954938 GATGTGATAATGTGATTCCGTATAAGACCATACCTAGGATATGGCATCGGT
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTAGGCTATGGCATCGGT
7954989 GTGTGATGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
50 3 0.03
51 34 0.40
52 12 0.14
53 34 0.40
54 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTAGGCTATGGCATCGGTAC
Found at i:7960581 original size:12 final size:12
Alignment explanation
Indices: 7960539--7960580 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
7960529 TATCTAATTC
7960539 AATGTTCAGACA
1 AATGTTCAGACA
* *
7960551 CATGTTCAGGCA
1 AATGTTCAGACA
*
7960563 AATGTTTAGACA
1 AATGTTCAGACA
7960575 AATGTT
1 AATGTT
7960581 TGAATATATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (12 bp):
AATGTTCAGACA
Found at i:7961126 original size:35 final size:35
Alignment explanation
Indices: 7961078--7961149 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
7961068 TTCTTTAGAG
*
7961078 TGTTAGCACACTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
7961113 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
7961148 TG
1 TG
7961150 GAATTCATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (35 bp):
TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
Found at i:7963878 original size:13 final size:13
Alignment explanation
Indices: 7963860--7963884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7963850 ATCCTACACA
7963860 CCCGTGTGATTCG
1 CCCGTGTGATTCG
7963873 CCCGTGTGATTC
1 CCCGTGTGATTC
7963885 ACTTGTGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.28, T:0.32
Consensus pattern (13 bp):
CCCGTGTGATTCG
Found at i:7969914 original size:22 final size:22
Alignment explanation
Indices: 7969887--7969939 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
7969877 CCTGTTATCA
7969887 AAATTATTTCAAATCACTTTAC
1 AAATTATTTCAAATCACTTTAC
7969909 AAATTATTTCAAATCACTTTAC
1 AAATTATTTCAAATCACTTTAC
7969931 AAATTATTT
1 AAATTATTT
7969940 TACAAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATTATTTCAAATCACTTTAC
Found at i:7969941 original size:12 final size:11
Alignment explanation
Indices: 7969887--7969945 Score: 59
Period size: 12 Copynumber: 5.3 Consensus size: 11
7969877 CCTGTTATCA
7969887 AAATTATTT-C
1 AAATTATTTAC
*
7969897 AAATCACTTTAC
1 AAATTA-TTTAC
7969909 AAATTATTT-C
1 AAATTATTTAC
*
7969919 AAATCACTTTAC
1 AAATTA-TTTAC
7969931 AAATTATTTTAC
1 AAATTA-TTTAC
7969943 AAA
1 AAA
7969946 AACCAAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 11 0.28
11 9 0.22
12 20 0.50
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (11 bp):
AAATTATTTAC
Found at i:7978020 original size:63 final size:63
Alignment explanation
Indices: 7977939--7978061 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
7977929 AGATGCAGGG
* *
7977939 GTCACACGAGTAAGACACACAGACGTGTGTCTAGGAC-GTGTAACTAACTAAGTTCATATTAGA
1 GTCACACGAGTAAAACACACAGACATGTGTCTAGG-CTGTGTAACTAACTAAGTTCATATTAGA
* * * * * *
7978002 GTCACACGGGTAAAACACACGGGCATGTGTCTAGGCTGTGTAACTCACTGAGTTTATATT
1 GTCACACGAGTAAAACACACAGACATGTGTCTAGGCTGTGTAACTAACTAAGTTCATATT
7978062 TGAGAGACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 1 0.02
63 50 0.98
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (63 bp):
GTCACACGAGTAAAACACACAGACATGTGTCTAGGCTGTGTAACTAACTAAGTTCATATTAGA
Found at i:7980625 original size:23 final size:19
Alignment explanation
Indices: 7980576--7980616 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7980566 AGGAAAAGCT
7980576 ATGACCTCCATTATCATGC
1 ATGACCTCCATTATCATGC
7980595 ATGACCTCCATTATCATGC
1 ATGACCTCCATTATCATGC
7980614 ATG
1 ATG
7980617 TAACGCCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (19 bp):
ATGACCTCCATTATCATGC
Found at i:7980923 original size:26 final size:26
Alignment explanation
Indices: 7980886--7980969 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7980876 TGATACAAAT
* *
7980886 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7980912 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7980938 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7980964 TGATAA
1 TGATAA
7980970 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7983979 original size:16 final size:16
Alignment explanation
Indices: 7983958--7983990 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7983948 ACATATTTAA
7983958 TAATATAACAAATTAT
1 TAATATAACAAATTAT
*
7983974 TAATATAACTAATTAT
1 TAATATAACAAATTAT
7983990 T
1 T
7983991 TCAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATATAACAAATTAT
Found at i:7984087 original size:27 final size:25
Alignment explanation
Indices: 7984057--7984111 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
7984047 AATATTCTTC
*
7984057 ATATATTAGTGAAAAATATTTATATTA
1 ATATATTAATGAAAAATA--TATATTA
* *
7984084 ATATTTTAATGATAAATATATATTA
1 ATATATTAATGAAAAATATATATTA
7984109 ATA
1 ATA
7984112 ATAAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
27 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (25 bp):
ATATATTAATGAAAAATATATATTA
Found at i:7984109 original size:17 final size:17
Alignment explanation
Indices: 7984084--7984117 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7984074 ATTTATATTA
* *
7984084 ATATTTTAATGATAAAT
1 ATATATTAATAATAAAT
7984101 ATATATTAATAATAAAT
1 ATATATTAATAATAAAT
7984118 TTTTTAGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATATTAATAATAAAT
Found at i:7990711 original size:88 final size:88
Alignment explanation
Indices: 7990598--7990784 Score: 248
Period size: 88 Copynumber: 2.1 Consensus size: 88
7990588 TGCGATAATT
* * ** * * *
7990598 CGCTGTACAGATACTTTACAGTTTAAACTGCCAGGTTAGATAATGGTACGCAGCATAGCTGATGT
1 CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTGACGT
*
7990663 ACATGCGATATAGTGCAGTAAAC
66 ACATACGATATAGTGCAGTAAAC
* *
7990686 CGTTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTATGCAGCATAGCTGACGT
1 CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTGACGT
* * *
7990751 ACGTACGGTATAGTGCGGTAAAC
66 ACATACGATATAGTGCAGTAAAC
*
7990774 TGCTGTACAAA
1 CGCTGTACAAA
7990785 TAGGTTGCAG
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (88 bp):
CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTGACGT
ACATACGATATAGTGCAGTAAAC
Found at i:7992516 original size:20 final size:19
Alignment explanation
Indices: 7992486--7992575 Score: 74
Period size: 20 Copynumber: 4.6 Consensus size: 19
7992476 AATATAATTC
7992486 TATTTATTAAATTTTATTT
1 TATTTATTAAATTTTATTT
* *
7992505 TCATTTAATAAAATATTA-TT
1 T-ATTT-ATTAAATTTTATTT
* ** *
7992525 AATATTATTAAAAATAATTT
1 TAT-TTATTAAATTTTATTT
7992545 TATTTATTAAATTTTATTTT
1 TATTTATTAAATTTTA-TTT
*
7992565 TATTTAATAAA
1 TATTTATTAAA
7992576 ATGTTGTTAA
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
19 21 0.38
20 25 0.45
21 9 0.16
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTATTAAATTTTATTT
Found at i:7993658 original size:20 final size:21
Alignment explanation
Indices: 7993635--7993676 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7993625 TTTTATTCCC
*
7993635 TTCTTTTTGTTC-TTTCTCTT
1 TTCTTTTTCTTCTTTTCTCTT
7993655 TTCTTTTTCTTCTTTTCTCTT
1 TTCTTTTTCTTCTTTTCTCTT
7993676 T
1 T
7993677 CGCCATATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (21 bp):
TTCTTTTTCTTCTTTTCTCTT
Found at i:7995714 original size:46 final size:46
Alignment explanation
Indices: 7995579--7995751 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
7995569 CTATTGTGAT
* * * *
7995579 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGAG
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GACGAGTG
* * * * *
7995625 CCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTG
1 CTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGAGTG
7995673 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAGT-
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG--AGTG
* *
7995720 -TAGTGTAAAACATGTCTGGGACATGCATCGGC
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGC
7995752 ACAGATATAA
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 54 0.51
47 26 0.25
48 25 0.24
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGAGTG
Found at i:8005773 original size:20 final size:20
Alignment explanation
Indices: 8005736--8005775 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8005726 TTTTATGATT
*
8005736 GTTGTTATCATAAATAAAAA
1 GTTGTTATCAGAAATAAAAA
8005756 GTTGTTAT-AGAAAGTAAAAA
1 GTTGTTATCAGAAA-TAAAAA
8005776 TAAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.33
Consensus pattern (20 bp):
GTTGTTATCAGAAATAAAAA
Found at i:8009455 original size:6 final size:6
Alignment explanation
Indices: 8009444--8009471 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8009434 TCCACAACCG
8009444 ACCAAC ACCAAC ACCAAC ACCAAC ACCA
1 ACCAAC ACCAAC ACCAAC ACCAAC ACCA
8009472 TCATCATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCAAC
Found at i:8013199 original size:29 final size:29
Alignment explanation
Indices: 8013142--8013201 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
8013132 AAAAAATATT
*
8013142 AAATTAATATAAACCTATAAAATTAATAA
1 AAATTAATAAAAACCTATAAAATTAATAA
*
8013171 AAATTAATAAAAACTTATAAATATT-ATAA
1 AAATTAATAAAAACCTATAAA-ATTAATAA
8013200 AA
1 AA
8013202 GATATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATTAATAAAAACCTATAAAATTAATAA
Found at i:8014321 original size:29 final size:29
Alignment explanation
Indices: 8014267--8014329 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
8014257 CCTAATGAGT
*
8014267 AATTTTATACATTAATTTTGATTTTG-TGC
1 AATTTTATACATAAATTTTGATTTTGAT-C
8014296 AATTTTATACATGAAATTTTGA-TTTGATC
1 AATTTTATACAT-AAATTTTGATTTTGATC
8014325 AATTT
1 AATTT
8014330 CTCACAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 22 0.71
30 9 0.29
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (29 bp):
AATTTTATACATAAATTTTGATTTTGATC
Found at i:8014624 original size:17 final size:17
Alignment explanation
Indices: 8014579--8014625 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
8014569 GTATAATTTT
* *
8014579 AAATTTATTTATTTTAA
1 AAATATATTAATTTTAA
*
8014596 AAATA-ATAAATTTTAA
1 AAATATATTAATTTTAA
8014612 AAATATATTAATTT
1 AAATATATTAATTT
8014626 ATAGTAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATATATTAATTTTAA
Found at i:8015053 original size:13 final size:15
Alignment explanation
Indices: 8015020--8015061 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
8015010 TTAAAATTTT
8015020 TATTT-TATTTTTAA
1 TATTTATATTTTTAA
8015034 TATTTATATTTTTAA
1 TATTTATATTTTTAA
*
8015049 -A-TTATAATTTTAA
1 TATTTATATTTTTAA
8015062 GAAGTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 6 0.23
15 9 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTATATTTTTAA
Found at i:8015180 original size:19 final size:19
Alignment explanation
Indices: 8015156--8015205 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
8015146 AAAAAACTTT
8015156 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
8015175 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
* *
8015194 TATATTTTTAAA
1 TTTAATTTTAAA
8015206 ATTAAGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAATTTTAAATTCAAAA
Found at i:8016726 original size:6 final size:6
Alignment explanation
Indices: 8016715--8016742 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8016705 GCATAAATAG
8016715 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
8016743 GACAGGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:8024445 original size:31 final size:31
Alignment explanation
Indices: 8024410--8024471 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
8024400 TTAAATAAAG
*
8024410 TATGGGTCAAGTATGTGTAAATATTCTAGTA
1 TATGGGTCAAGTATGTATAAATATTCTAGTA
8024441 TATGGGTCAAGTATGTATAAATATTCTAGTA
1 TATGGGTCAAGTATGTATAAATATTCTAGTA
8024472 ACTAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (31 bp):
TATGGGTCAAGTATGTATAAATATTCTAGTA
Found at i:8029867 original size:17 final size:17
Alignment explanation
Indices: 8029820--8029861 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
8029810 AAAATTTCAC
8029820 TAATTTTTGTATAAATA
1 TAATTTTTGTATAAATA
8029837 TAATTTTTGTATAAATA
1 TAATTTTTGTATAAATA
8029854 TAATTTTT
1 TAATTTTT
8029862 AAATAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TAATTTTTGTATAAATA
Found at i:8035119 original size:40 final size:40
Alignment explanation
Indices: 8034978--8035126 Score: 160
Period size: 41 Copynumber: 3.7 Consensus size: 40
8034968 AAATAGGTTT
*
8034978 TTAGCGGCG-TTTTAATGAAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTTTTAA--AAAAACGCCGCTAAAGATCAAGCA
**
8035019 TTAGCGGCGTTTTTCATTAAAACGCCGCTAAAGATCAAGCA
1 TTAGCGGCGTTTTT-AAAAAAACGCCGCTAAAGATCAAGCA
* * * *
8035060 TTAGCGGCGCTTTTT-AAAAAACGCCGCTATAGGTC-ACCT
1 TTAGCGGCG-TTTTTAAAAAAACGCCGCTAAAGATCAAGCA
*
8035099 TTAGCGGCGCTTTTTAAAAAAATGCCGC
1 TTAGCGGCG-TTTTTAAAAAAACGCCGC
8035127 AAAAAATTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 17 0.18
40 27 0.29
41 40 0.43
42 9 0.10
43 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCGGCGTTTTTAAAAAAACGCCGCTAAAGATCAAGCA
Found at i:8035643 original size:7 final size:7
Alignment explanation
Indices: 8035599--8035646 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
8035589 CTATTTTAAA
8035599 GTTTATG
1 GTTTATG
*
8035606 GATTATGG
1 GTTTAT-G
*
8035614 GTTTAGG
1 GTTTATG
*
8035621 GATTATG
1 GTTTATG
*
8035628 ATTTATG
1 GTTTATG
8035635 GTTTATG
1 GTTTATG
8035642 GTTTA
1 GTTTA
8035647 AGGGTTGGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
7 27 0.84
8 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (7 bp):
GTTTATG
Found at i:8035683 original size:15 final size:15
Alignment explanation
Indices: 8035641--8035687 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
8035631 TATGGTTTAT
8035641 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
* **
8035655 GGTTTGAGCTTTAGG
1 GGTTTAAGGGTTAGG
8035670 GGTTTAAGGGTTAGG
1 GGTTTAAGGGTTAGG
8035685 GGT
1 GGT
8035688 CGGGGGTTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 9 0.35
15 17 0.65
ACGTcount: A:0.15, C:0.02, G:0.47, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:8035754 original size:7 final size:7
Alignment explanation
Indices: 8035744--8035769 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8035734 GGTTTAGGGT
8035744 TTAGAGA
1 TTAGAGA
8035751 TTAGAGA
1 TTAGAGA
8035758 TTAGAGA
1 TTAGAGA
8035765 TTAGA
1 TTAGA
8035770 TTAATTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (7 bp):
TTAGAGA
Found at i:8036353 original size:21 final size:22
Alignment explanation
Indices: 8036338--8036391 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8036328 AAAAAAATTT
*
8036338 AAAATTTAAAA-TAAAAAATAA
1 AAAATTAAAAATTAAAAAATAA
8036359 AAAATTAAAAATTAAAAAATAA
1 AAAATTAAAAATTAAAAAATAA
*
8036381 AGAACTTAAAA
1 A-AAATTAAAA
8036392 TTTTAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 10 0.34
22 11 0.38
23 8 0.28
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAATTAAAAATTAAAAAATAA
Found at i:8036355 original size:14 final size:14
Alignment explanation
Indices: 8036329--8036378 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
8036319 AAAATATTCA
*
8036329 AAAAAATTTAAAAT
1 AAAAAATTAAAAAT
** *
8036343 TTAAAATAAAAAAT
1 AAAAAATTAAAAAT
8036357 AAAAAATTAAAAATT
1 AAAAAATTAAAAA-T
8036372 AAAAAAT
1 AAAAAAT
8036379 AAAGAACTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
14 20 0.71
15 8 0.29
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAAATTAAAAAT
Found at i:8036367 original size:15 final size:15
Alignment explanation
Indices: 8036345--8036391 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
8036335 TTTAAAATTT
8036345 AAAATAAAAAA-TAA
1 AAAATAAAAAATTAA
*
8036359 AAAATTAAAAATTAA
1 AAAATAAAAAATTAA
*
8036374 AAAATAAAGAACTTAA
1 AAAATAAA-AAATTAA
8036390 AA
1 AA
8036392 TTTTAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 10 0.36
15 10 0.36
16 8 0.29
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAAAAATTAA
Found at i:8036392 original size:22 final size:21
Alignment explanation
Indices: 8036329--8036393 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
8036319 AAAATATTCA
* *
8036329 AAAAAATTTAAAATTTAAAA-T
1 AAAAAA-TAAAAAATTAAAATT
8036350 AAAAAATAAAAAATTAAAAATT
1 AAAAAATAAAAAATT-AAAATT
*
8036372 AAAAAATAAAGAACTTAAAATT
1 AAAAAATAAA-AAATTAAAATT
8036394 TTAATATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 7 0.18
21 10 0.26
22 17 0.45
23 4 0.11
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAAAATAAAAAATTAAAATT
Found at i:8036617 original size:40 final size:40
Alignment explanation
Indices: 8036552--8036636 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
8036542 ATAATGGCAT
8036552 AAAAAATAAGCTATAGTGGCGTTTTTAAGATA-AACGCCAC
1 AAAAAATAAGCTATAGTGGCGTTTTTAAGA-AGAACGCCAC
* **
8036592 AAAAAATTAAGCTGTAGTGGC-TTTTTTTGAAGAACGCCAC
1 AAAAAA-TAAGCTATAGTGGCGTTTTTAAGAAGAACGCCAC
8036632 AAAAA
1 AAAAA
8036637 GCCATTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
39 1 0.03
40 26 0.65
41 13 0.32
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (40 bp):
AAAAAATAAGCTATAGTGGCGTTTTTAAGAAGAACGCCAC
Found at i:8041084 original size:15 final size:16
Alignment explanation
Indices: 8041049--8041084 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8041039 CAACACAACT
8041049 TCAAAAGTTCAGAAGA
1 TCAAAAGTTCAGAAGA
*
8041065 TCAAAAGTTTAGAA-A
1 TCAAAAGTTCAGAAGA
8041080 TCAAA
1 TCAAA
8041085 GCTTGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.11, G:0.14, T:0.22
Consensus pattern (16 bp):
TCAAAAGTTCAGAAGA
Found at i:8042385 original size:28 final size:28
Alignment explanation
Indices: 8042325--8042377 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
8042315 TAAATTTTAG
*
8042325 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAATTATGAAATTTTAATAAAAATAT
8042353 AAAAATTA-GAAATCTTT-ATAAAAAT
1 AAAAATTATGAAAT-TTTAATAAAAAT
8042378 CGTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAAATTATGAAATTTTAATAAAAATAT
Found at i:8042424 original size:37 final size:36
Alignment explanation
Indices: 8042343--8042423 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 36
8042333 TTAAATTTTA
*
8042343 ATAAAAATATAAAAATTAGAAATCTTTATAAAAATC
1 ATAAAAAAATAAAAATTAGAAATCTTTATAAAAATC
* *
8042379 GTAAAAAAATAAAAATT-GTAAAAT-TTTATTAAAATC
1 ATAAAAAAATAAAAATTAG--AAATCTTTATAAAAATC
8042415 ATAAAAAAA
1 ATAAAAAAA
8042424 AATTACCAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 1 0.03
36 34 0.87
37 4 0.10
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (36 bp):
ATAAAAAAATAAAAATTAGAAATCTTTATAAAAATC
Found at i:8042700 original size:28 final size:28
Alignment explanation
Indices: 8042663--8042726 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
8042653 TTATATTTTA
* *
8042663 ATAATTTTTTACGATTTTTAAAAAAATT
1 ATAAATTTTTACGATTTTAAAAAAAATT
*
8042691 ATAAATTTTTACTATTTTAAAAAAAATT
1 ATAAATTTTTACGATTTTAAAAAAAATT
8042719 AT-AATTTT
1 ATAAATTTT
8042727 ATATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 6 0.18
28 27 0.82
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (28 bp):
ATAAATTTTTACGATTTTAAAAAAAATT
Found at i:8042735 original size:27 final size:28
Alignment explanation
Indices: 8042663--8042736 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
8042653 TTATATTTTA
* *
8042663 ATAATTTTTTACGATTTTT-AAAAAAATT
1 ATAAATTTTTAC-TTTTTTAAAAAAAATT
*
8042691 ATAAATTTTTACTATTTTAAAAAAAATT
1 ATAAATTTTTACTTTTTTAAAAAAAATT
8042719 AT-AATTTTATA-TTTTTTA
1 ATAAATTTT-TACTTTTTTA
8042737 CAATTTTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 16 0.40
28 24 0.60
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (28 bp):
ATAAATTTTTACTTTTTTAAAAAAAATT
Found at i:8042801 original size:20 final size:20
Alignment explanation
Indices: 8042755--8042802 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
8042745 ATATTTTTTC
* *
8042755 TTATTTTTTAATATTTAAAA
1 TTATTTATTAAAATTTAAAA
*
8042775 TTTTTTATTAAAATTTAATAA
1 TTATTTATTAAAATTTAA-AA
8042796 -TATTTAT
1 TTATTTAT
8042803 AACTTTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATTTATTAAAATTTAAAA
Found at i:8042834 original size:9 final size:9
Alignment explanation
Indices: 8042717--8042846 Score: 70
Period size: 9 Copynumber: 14.3 Consensus size: 9
8042707 TTAAAAAAAA
8042717 TTATAA-TT
1 TTATAATTT
*
8042725 TTATATTTT
1 TTATAATTT
*
8042734 TTACAATTT
1 TTATAATTT
*
8042743 TTATATTTT
1 TTATAATTT
* *
8042752 TTCTTATTT
1 TTATAATTT
*
8042761 TT-TAATAT
1 TTATAATTT
*
8042769 TTAAAATTTT
1 TTATAA-TTT
*
8042779 TTATTAAAATT
1 TTA-T-AATTT
* *
8042790 TAATAATAT
1 TTATAATTT
*
8042799 TTATAACTT
1 TTATAATTT
*
8042808 TTATTGA-TT
1 TTA-TAATTT
*
8042817 TTAT-TTTT
1 TTATAATTT
8042825 TTATAATTTT
1 TTATAA-TTT
8042835 TTATAATTT
1 TTATAATTT
8042844 TTA
1 TTA
8042847 ATAAAAGAAG
Statistics
Matches: 90, Mismatches: 23, Indels: 17
0.69 0.18 0.13
Matches are distributed among these distances:
8 18 0.20
9 49 0.54
10 17 0.19
11 4 0.04
12 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (9 bp):
TTATAATTT
Found at i:8042836 original size:10 final size:10
Alignment explanation
Indices: 8042821--8042850 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8042811 TTGATTTTAT
8042821 TTTTTTATAA
1 TTTTTTATAA
8042831 TTTTTTATAA
1 TTTTTTATAA
*
8042841 TTTTTAATAA
1 TTTTTTATAA
8042851 AAGAAGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:8044967 original size:22 final size:22
Alignment explanation
Indices: 8044935--8044978 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8044925 AGATTGCCAA
8044935 GTTATACGTTTTACAGGGTTCT
1 GTTATACGTTTTACAGGGTTCT
* *
8044957 GTTATATGTTTTGCAGGGTTCT
1 GTTATACGTTTTACAGGGTTCT
8044979 ACTGTTACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.25, T:0.48
Consensus pattern (22 bp):
GTTATACGTTTTACAGGGTTCT
Found at i:8047266 original size:27 final size:27
Alignment explanation
Indices: 8047218--8047322 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
8047208 GCGAGACTGC
* *
8047218 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
8047245 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
8047271 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
8047298 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
8047323 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:8047728 original size:8 final size:8
Alignment explanation
Indices: 8047712--8047757 Score: 67
Period size: 8 Copynumber: 5.8 Consensus size: 8
8047702 CTCAAAATAC
8047712 CGGCTTTT
1 CGGCTTTT
*
8047720 CGGCATTT
1 CGGCTTTT
8047728 CGGCTTTT
1 CGGCTTTT
8047736 CGGCATTTT
1 CGGC-TTTT
8047745 -GGCTTTT
1 CGGCTTTT
8047752 CGGCTT
1 CGGCTT
8047758 GTGCCGATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 4 0.12
8 26 0.76
9 4 0.12
ACGTcount: A:0.04, C:0.24, G:0.26, T:0.46
Consensus pattern (8 bp):
CGGCTTTT
Found at i:8047733 original size:16 final size:16
Alignment explanation
Indices: 8047712--8047755 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
8047702 CTCAAAATAC
8047712 CGGCTTTTCGGCATTT
1 CGGCTTTTCGGCATTT
8047728 CGGCTTTTCGGCATTT
1 CGGCTTTTCGGCATTT
*
8047744 TGGCTTTTCGGC
1 CGGCTTTTCGGC
8047756 TTGTGCCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.05, C:0.25, G:0.27, T:0.43
Consensus pattern (16 bp):
CGGCTTTTCGGCATTT
Found at i:8050972 original size:5 final size:5
Alignment explanation
Indices: 8050962--8050997 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
8050952 CATTTACAAA
*
8050962 AAAAT AAAAT AAAAT AAAAT AAATT AACAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
8050998 TTAATCATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:8050982 original size:15 final size:16
Alignment explanation
Indices: 8050957--8050997 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
8050947 GTTACCATTT
*
8050957 ACAAAAAAATAAAATA
1 ACAATAAAATAAAATA
*
8050973 A-AATAAAATAAATTA
1 ACAATAAAATAAAATA
8050988 ACAATAAAAT
1 ACAATAAAAT
8050998 TTAATCATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (16 bp):
ACAATAAAATAAAATA
Found at i:8051796 original size:16 final size:16
Alignment explanation
Indices: 8051775--8051805 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8051765 CATTTTATTT
*
8051775 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
8051791 ATATTAAGATAATTA
1 ATATTAAGATAATTA
8051806 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:8051834 original size:28 final size:27
Alignment explanation
Indices: 8051771--8051835 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
8051761 ACTCCATTTT
8051771 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
8051799 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
8051828 ATTTTATT
1 ATTTTATT
8051836 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:8054887 original size:11 final size:12
Alignment explanation
Indices: 8054871--8054899 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
8054861 TTACTTTTGG
8054871 TATTTTTCTT-A
1 TATTTTTCTTAA
8054882 TATTTTTCTTAA
1 TATTTTTCTTAA
8054894 TATTTT
1 TATTTT
8054900 AAATATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (12 bp):
TATTTTTCTTAA
Found at i:8058483 original size:28 final size:29
Alignment explanation
Indices: 8058429--8058487 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 29
8058419 AAGTATAATA
8058429 AAAATAAACATATAAAAAAACCCAAAAAT
1 AAAATAAACATATAAAAAAACCCAAAAAT
8058458 AAAATAAACATAT-AAAAAACCCAAAAAT
1 AAAATAAACATATAAAAAAACCCAAAAAT
8058486 AA
1 AA
8058488 TTTCACTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.73, C:0.14, G:0.00, T:0.14
Consensus pattern (29 bp):
AAAATAAACATATAAAAAAACCCAAAAAT
Found at i:8063402 original size:3 final size:3
Alignment explanation
Indices: 8063389--8063430 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
8063379 TATAATTTAA
8063389 ATT ACTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8063431 AAATACAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8067959 original size:18 final size:18
Alignment explanation
Indices: 8067928--8067977 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
8067918 TAGTAAAAAA
*
8067928 TTATAAAAATTAATTAAAT
1 TTATAATAA-TAATTAAAT
8067947 TTATAATAATAATTAAAT
1 TTATAATAATAATTAAAT
*
8067965 ATATAATTAATAA
1 TTATAA-TAATAA
8067978 ATACAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATAATAATAATTAAAT
Found at i:8067970 original size:15 final size:17
Alignment explanation
Indices: 8067929--8067980 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 17
8067919 AGTAAAAAAT
*
8067929 TATAAAAATTAATTAAA
1 TATAATAATTAATTAAA
8067946 TTTATAATAA-TAATTAAA
1 --TATAATAATTAATTAAA
8067964 TAT-ATAATTAA-TAAA
1 TATAATAATTAATTAAA
8067979 TA
1 TA
8067981 CAATTAATCC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 10 0.32
16 6 0.19
18 8 0.26
19 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAATAATTAATTAAA
Found at i:8071548 original size:24 final size:24
Alignment explanation
Indices: 8071521--8071570 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8071511 ATAAACTTTT
8071521 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
8071545 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
8071569 TT
1 TT
8071571 ACTTCCTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (24 bp):
TTTCAAAGATAAAAGGATTTTAAC
Found at i:8077064 original size:38 final size:37
Alignment explanation
Indices: 8076993--8077064 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
8076983 AATAACAAAT
* *
8076993 AATTTAATCATATTTTAACATAATTATTATTAAATAC
1 AATTTAATAACATTTTAACATAATTATTATTAAATAC
* *
8077030 AATTTAATAACATTCTTAATATAATTATTTTTAAA
1 AATTTAATAACATT-TTAACATAATTATTATTAAA
8077065 ATATGAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 12 0.40
38 18 0.60
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (37 bp):
AATTTAATAACATTTTAACATAATTATTATTAAATAC
Found at i:8077089 original size:39 final size:38
Alignment explanation
Indices: 8077012--8077091 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
8077002 ATATTTTAAC
* * *
8077012 ATAATTATTATTAAATACAATTTAATAACATTCTTAAT
1 ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
* *
8077050 ATAATTATTTTTAAAATATGAA-TTAATAAAAATCATAAT
1 ATAATTATTATT-AAATA-CAATTTAATAAAAATCATAAT
8077089 ATA
1 ATA
8077092 TAATATTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 11 0.31
39 22 0.63
40 2 0.06
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (38 bp):
ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
Found at i:8079533 original size:11 final size:12
Alignment explanation
Indices: 8079510--8079538 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8079500 TTTTTAATTC
8079510 TATGAGAATTTT
1 TATGAGAATTTT
8079522 TATGAGAATTTT
1 TATGAGAATTTT
8079534 TATGA
1 TATGA
8079539 AAGTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (12 bp):
TATGAGAATTTT
Done.