Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 322 of 378
Found at i:97943245 original size:47 final size:48
Alignment explanation
Indices: 97943184--97943298 Score: 198
Period size: 47 Copynumber: 2.4 Consensus size: 48
97943174 CTCTTTTAAC
97943184 AACTGGGGCA-AAGCCCTTTTAATAACTGGGACATAAGCCCTTTT-AT
1 AACTGGGGCATAAGCCCTTTTAATAACTGGGACATAAGCCCTTTTGAT
* *
97943230 AACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGAT
1 AACTGGGGCATAAGCCCTTTTAATAACTGGGACATAAGCCCTTTTGAT
97943278 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97943299 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
46 10 0.15
47 32 0.49
48 23 0.35
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
AACTGGGGCATAAGCCCTTTTAATAACTGGGACATAAGCCCTTTTGAT
Found at i:97943270 original size:71 final size:71
Alignment explanation
Indices: 97943156--97943298 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 71
97943146 TGCTTTATCA
*
97943156 TATAACTGGAGGCCTAGCCTCTTTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGACATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGACATAAG
97943221 CCCTTT
66 CCCTTT
* * * *
97943227 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTAATAACTGGGACATA
97943290 AGCCCTTT
64 AGCCCTTT
97943298 T
1 T
97943299 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 20 0.31
71 45 0.69
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGACATAAG
CCCTTT
Found at i:97943373 original size:20 final size:20
Alignment explanation
Indices: 97943348--97943408 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
97943338 TTATGATTAC
97943348 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97943368 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
97943388 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
97943408 A
1 A
97943409 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97943483 original size:25 final size:25
Alignment explanation
Indices: 97943451--97943498 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97943441 ATACATAAAC
* * *
97943451 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97943476 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97943499 ATATTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97944754 original size:27 final size:27
Alignment explanation
Indices: 97944733--97945126 Score: 424
Period size: 27 Copynumber: 14.7 Consensus size: 27
97944723 AAGGGTATTT
* *
97944733 TAGTAATTTTGTAAATCGAGGGCAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
97944760 TAGTAATTCTGTAAATC-AGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97944786 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
97944813 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
97944840 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
97944867 T-GATAATTATGTAAATCG-GGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * *
97944893 CGGTAATTATGTAAATTG-GGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
97944919 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
97944946 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
97944973 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * ** *
97945000 CGGTAATTTTACAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
97945027 CGGTAATTCTATAAATC-AGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97945053 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97945080 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
97945107 CGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATCGAG
97945127 AGTACTTTGG
Statistics
Matches: 325, Mismatches: 33, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
26 95 0.29
27 228 0.70
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:97944830 original size:80 final size:80
Alignment explanation
Indices: 97944735--97945126 Score: 479
Period size: 80 Copynumber: 4.9 Consensus size: 80
97944725 GGGTATTTTA
* * ** *
97944735 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATCAGGGTAAAACAGTAATTCTATAA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAAAACAGTAATTCTGTAA
*
97944800 ATCGAGGGTAAAATG
66 ATCGAGGGTAAAACG
* *
97944815 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TGATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGTAAAACAG-TAATTCTGT
97944879 AAATCG-GGGTAAAACG
64 AAATCGAGGGTAAAACG
* * * *
97944895 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGTAAAACAGTAATTCTGTA
97944959 AA-CTGAGGGTAAAACG
65 AATC-GAGGGTAAAACG
* ** * * *
97944975 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCAGGGTAAAACAGTAATTCTGTA
*
97945040 AATC-AGGGTAAAACA
65 AATCGAGGGTAAAACG
* ** * *
97945055 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCAGGGTAAAACAGTAATTCTGTA
97945120 AATCGAG
65 AATCGAG
97945127 AGTACTTTGG
Statistics
Matches: 273, Mismatches: 30, Indels: 17
0.85 0.09 0.05
Matches are distributed among these distances:
78 1 0.00
79 46 0.17
80 158 0.58
81 66 0.24
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAACG
Found at i:97945141 original size:107 final size:108
Alignment explanation
Indices: 97944734--97945126 Score: 528
Period size: 107 Copynumber: 3.7 Consensus size: 108
97944724 AGGGTATTTT
* * * * *
97944734 AGTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACAGTAATTCTAT
1 AGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
* *
97944798 AAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* ** * * *
97944841 GGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCG-GGGTAAAACGGTAATTATGT
1 AGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
* *
97944905 AAATTG-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
** *
97944947 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTA
1 AGTAATTCTGTAAATC-GAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTA
* *
97945011 CAAATTGAGGGTAAAACGGTAATTCTATAAATC-AGGGTAAAAC
65 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* *
97945054 AGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTG
1 AGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTA
97945118 TAAATCGAG
65 TAAATCGAG
97945127 AGTACTTTGG
Statistics
Matches: 252, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
105 1 0.00
106 72 0.29
107 153 0.61
108 26 0.10
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (108 bp):
AGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:97945155 original size:54 final size:54
Alignment explanation
Indices: 97944735--97945126 Score: 508
Period size: 54 Copynumber: 7.3 Consensus size: 54
97944725 GGGTATTTTA
* * ** *
97944735 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
97944788 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
97944842 GTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
97944895 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
97944948 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * *
97945002 GTAATTTTACAAATTGAGGGTAAAACGGTAATTCTATAAATC-AGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
97945055 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
97945109 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
97945127 AGTACTTTGG
Statistics
Matches: 295, Mismatches: 37, Indels: 13
0.86 0.11 0.04
Matches are distributed among these distances:
52 23 0.08
53 125 0.42
54 147 0.50
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:97947957 original size:31 final size:31
Alignment explanation
Indices: 97947916--97947979 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
97947906 CCTTTTCATA
*
97947916 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
97947947 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
97947978 TT
1 TT
97947980 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:97948236 original size:24 final size:24
Alignment explanation
Indices: 97948172--97948313 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
97948162 GCTTTATCAT
*
97948172 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
97948197 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97948220 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
97948243 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97948267 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97948291 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97948314 TCACTTCCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
23 41 0.36
24 64 0.57
25 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97948287 original size:71 final size:71
Alignment explanation
Indices: 97948171--97948313 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 71
97948161 TGCTTTATCA
*
97948171 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
97948236 CCCTTT
66 CCCTTT
* *
97948242 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATA
97948305 AGCCCTTT
64 AGCCCTTT
97948313 T
1 T
97948314 TCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
70 21 0.31
71 46 0.69
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTT
Found at i:97948388 original size:20 final size:20
Alignment explanation
Indices: 97948363--97948423 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
97948353 TTATGATTAC
97948363 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97948383 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
97948403 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
97948423 A
1 A
97948424 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97948512 original size:25 final size:25
Alignment explanation
Indices: 97948466--97948515 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
97948456 ATACATAAAC
* * * *
97948466 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97948491 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97948516 TATTATAAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97949772 original size:27 final size:27
Alignment explanation
Indices: 97949751--97950146 Score: 417
Period size: 27 Copynumber: 14.7 Consensus size: 27
97949741 AAGGGTATTT
* *
97949751 TAGTAATTTTGTAAATCGAGGGCAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
97949778 TAGTAATTCTGTAAATC-AGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97949804 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97949831 TGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
97949858 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
97949885 T-GATAATTATGTAAATCG-GGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * * *
97949911 CGGTAATTATGTAAATTGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
97949938 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
97949965 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
97949992 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
97950019 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
97950046 CGGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* **
97950073 CAGTAATTCTGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97950100 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
*
97950127 TGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATCGAG
97950147 AGTACTTTGG
Statistics
Matches: 325, Mismatches: 34, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
26 48 0.15
27 274 0.84
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:97950161 original size:54 final size:54
Alignment explanation
Indices: 97949753--97950146 Score: 481
Period size: 54 Copynumber: 7.3 Consensus size: 54
97949743 GGGTATTTTA
* * ** *
97949753 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
97949806 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
97949860 GTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * * **
97949913 GTAATTATGTAAATTGGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
97949967 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * *
97950021 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
** ** *
97950075 GTAATTCTGTAAATTAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
97950129 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
97950147 AGTACTTTGG
Statistics
Matches: 294, Mismatches: 42, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
53 86 0.29
54 207 0.70
55 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:97950161 original size:81 final size:81
Alignment explanation
Indices: 97949753--97950146 Score: 490
Period size: 81 Copynumber: 4.9 Consensus size: 81
97949743 GGGTATTTTA
* * ** ** *
97949753 GTAATTTTGTAAATCGAGGGCAAAATAGTAATTCTGTAAATC-AGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
*
97949817 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * *
97949833 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
97949898 AATCG-GGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * *
97949913 GTAATTATGTAAATTGGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
97949978 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAACG
* * ** * *
97949994 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
* *
97950059 AATCAAGGGTAAAACA
66 AATCGAGGGTAAAACG
** **
97950075 GTAATTCTGTAAATTAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTCTGT
97950139 AAATCGAG
65 AAATCGAG
97950147 AGTACTTTGG
Statistics
Matches: 266, Mismatches: 43, Indels: 9
0.84 0.14 0.03
Matches are distributed among these distances:
79 1 0.00
80 107 0.40
81 157 0.59
82 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:97952612 original size:44 final size:42
Alignment explanation
Indices: 97952534--97952685 Score: 132
Period size: 42 Copynumber: 3.6 Consensus size: 42
97952524 TGATATGTGT
*
97952534 TTTCGTGTAAGACCACGTCTGGGACATTAGCATCG-ACTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATGAGCATCGTA-TT-TGA
* *
97952577 TTTACGTGTAAGACCATGTTTGGGACATCGA-CATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACAT-GAGCATCGTATTTGA
* ***
97952620 TTTCATGTAAGACTGTGTCTGGG-CAGTG-GCATCGATATTTGA
1 TTTCGTGTAAGACCACGTCTGGGACA-TGAGCATCG-TATTTGA
* * *
97952662 TTACATGTAAGACCATGTCTGGGA
1 TTTCGTGTAAGACCACGTCTGGGA
97952686 TGTTGGCATT
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 8 0.09
42 44 0.48
43 9 0.10
44 29 0.32
45 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATGAGCATCGTATTTGA
Found at i:97956058 original size:34 final size:34
Alignment explanation
Indices: 97955994--97956058 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
97955984 TTTCTGTTAT
*
97955994 TGTTACTGAAATGGGATAAGGCCTACACTGATAC
1 TGTTACTGAAATGGGATAAGCCCTACACTGATAC
* *
97956028 TGTTATTGAAATGGGCTAAAGCCCTA-ACTGA
1 TGTTACTGAAATGGGAT-AAGCCCTACACTGA
97956059 GATTGAACCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 20 0.74
35 7 0.26
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (34 bp):
TGTTACTGAAATGGGATAAGCCCTACACTGATAC
Found at i:97957066 original size:26 final size:26
Alignment explanation
Indices: 97957037--97957096 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
97957027 ACATGCAAAC
*
97957037 AAATAGCAACATAATCACATATATAT
1 AAATACCAACATAATCACATATATAT
97957063 AAATACCAACATAATCACATATATAT
1 AAATACCAACATAATCACATATATAT
97957089 AAATACCA
1 AAATACCA
97957097 TTGACATAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.55, C:0.18, G:0.02, T:0.25
Consensus pattern (26 bp):
AAATACCAACATAATCACATATATAT
Found at i:97964143 original size:49 final size:49
Alignment explanation
Indices: 97964072--97964386 Score: 540
Period size: 49 Copynumber: 6.4 Consensus size: 49
97964062 TTTACCACAT
* * *
97964072 ATATATATACACTTTCATATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
97964121 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
97964170 ATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
97964219 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
97964268 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
97964317 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC
97964368 ATATATATACATTTTCACA
1 ATATATATACATTTTCACA
97964387 CTTGCACATT
Statistics
Matches: 254, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 232 0.91
51 22 0.09
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:97966851 original size:40 final size:40
Alignment explanation
Indices: 97966796--97967005 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97966786 AACATTGGAA
97966796 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97966836 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97966876 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97966916 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97966955 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97966996 CTATATCCGG
1 ATATATCCGG
97967006 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97971717 original size:92 final size:92
Alignment explanation
Indices: 97971606--97971775 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
97971596 GCCCCTAAGT
* *
97971606 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97971671 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
97971698 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97971763 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97971776 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:97971772 original size:46 final size:46
Alignment explanation
Indices: 97971601--97971772 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
97971591 AACCCGCCCC
* * *
97971601 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
97971647 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
97971693 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97971739 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97971773 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97971791 original size:46 final size:46
Alignment explanation
Indices: 97971603--97971791 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
97971593 CCCGCCCCTA
* ** * *
97971603 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
97971648 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
97971696 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
97971741 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
97971787 AGTGA
1 AGTGA
97971792 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:97972224 original size:30 final size:30
Alignment explanation
Indices: 97972190--97972249 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97972180 ATTTAATACG
97972190 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97972220 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97972250 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97979175 original size:92 final size:92
Alignment explanation
Indices: 97979064--97979233 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
97979054 GCCCCTAAGT
* *
97979064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97979129 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
97979156 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97979221 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97979234 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:97979230 original size:46 final size:46
Alignment explanation
Indices: 97979059--97979230 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
97979049 AACCCGCCCC
* * *
97979059 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
97979105 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
97979151 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97979197 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97979231 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97979249 original size:46 final size:46
Alignment explanation
Indices: 97979061--97979249 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
97979051 CCCGCCCCTA
* ** * *
97979061 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
97979106 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
97979154 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
97979199 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
97979245 AGTGA
1 AGTGA
97979250 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:97979686 original size:30 final size:30
Alignment explanation
Indices: 97979652--97979711 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97979642 ATTTAATACG
97979652 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97979682 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97979712 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97995722 original size:68 final size:68
Alignment explanation
Indices: 97995639--97995776 Score: 258
Period size: 68 Copynumber: 2.0 Consensus size: 68
97995629 TGAATTATGT
*
97995639 GAAAAATGTGAAAGACTATTGAAGAATCGTCATTGGCATTCCAAGGAGAATGGTAAAGGAGTACA
1 GAAAAATGTGAAAGACTATCGAAGAATCGTCATTGGCATTCCAAGGAGAATGGTAAAGGAGTACA
97995704 AAC
66 AAC
*
97995707 GAAAAATGTGAAAGACTATCGAAGTATCGTCATTGGCATTCCAAGGAGAATGGTAAAGGAGTACA
1 GAAAAATGTGAAAGACTATCGAAGAATCGTCATTGGCATTCCAAGGAGAATGGTAAAGGAGTACA
97995772 AAC
66 AAC
97995775 GA
1 GA
97995777 GGAAAATCCC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.20
Consensus pattern (68 bp):
GAAAAATGTGAAAGACTATCGAAGAATCGTCATTGGCATTCCAAGGAGAATGGTAAAGGAGTACA
AAC
Found at i:97995884 original size:46 final size:46
Alignment explanation
Indices: 97995831--97995997 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 46
97995821 ATATGAACTG
*
97995831 GTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTC
* * * *
97995877 GTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGCATCCGAACTT
1 GTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCCGAGCTC
*
97995924 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAGCTC
* * * *
97995970 ATTGAGGTGAGTCTGAGTTCGCTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
97995998 GCGGGTTACA
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 3 0.03
46 45 0.47
47 24 0.25
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTC
Found at i:98010327 original size:48 final size:48
Alignment explanation
Indices: 98010204--98010336 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
98010194 TCTCATATCG
* ** *
98010204 ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
98010252 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
98010300 ATGCCATGTCCCAGAGATGATCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
98010337 CATAACCCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:98012096 original size:48 final size:48
Alignment explanation
Indices: 98012040--98012352 Score: 151
Period size: 48 Copynumber: 6.6 Consensus size: 48
98012030 CATGTGAGCT
98012040 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTTCATATGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACTATTTCATATGCC
* * ** *
98012088 AGTGTAAGACCAAGTTTGAAACATGGCATC-G-ACTATGTT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACTAT-TTCAT-A-TGCC
* *
98012136 AGTGTAAGACCATGT-T-GGACATGGCATC-G-AC-A-TTGATTGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACTATTTCA-TAT--GCC
* * * * * * *
98012181 AGTGTAAAACCATGTTTAGGACATGGCATCGGCCACTATATGAGA-GCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACTATTTCATATGCC
* *
98012229 AGTGTAAGACCATGT-T-GGACATGGTC-TCAGCA-T-TTTGACGAGA-GCT
1 AGTGTAAGACCATGTCTGGGACATGG-CATCAGCACTATTT--C-ATATGCC
* * *** *
98012275 AGTGTAAGACCATGTCTAGGACAAGGCATCAGC-CT-CGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACTATTTCATAT--GCC
* *
98012323 AATGTAATACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
98012353 GGCAATTCAC
Statistics
Matches: 209, Mismatches: 30, Indels: 52
0.72 0.10 0.18
Matches are distributed among these distances:
43 4 0.02
44 2 0.01
45 24 0.11
46 50 0.24
47 21 0.10
48 102 0.49
50 2 0.01
51 1 0.00
52 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCACTATTTCATATGCC
Found at i:98012272 original size:46 final size:45
Alignment explanation
Indices: 98012035--98012304 Score: 212
Period size: 48 Copynumber: 5.7 Consensus size: 45
98012025 GGTGACATGT
* *
98012035 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTCAT-A
1 GAGCCAGTGTAAGACCATGT-T-GGACATGGCATC-G--ACATTTGATGA
* * *
98012084 -TGCCAGTGTAAGACCAAGTTTGAAACATGGCATCGACTATGTT-ATGA
1 GAGCCAGTGTAAGACCATG-TTG-GACATGGCATCGAC-AT-TTGATGA
*
98012131 GAGCCAGTGTAAGACCATGTTGGACATGGCATCGACA-TTGATTGT
1 GAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTTGA-TGA
* * *
98012176 GAGCCAGTGTAAAACCATGTTTAGGACATGGCATCGGCCACTAT-ATGA
1 GAGCCAGTGTAAGACCATG-TT-GGACATGGCATC-GACA-TTTGATGA
*
98012224 GAGCCAGTGTAAGACCATGTTGGACATGGTC-TC-AGCATTTTGACGA
1 GAGCCAGTGTAAGACCATGTTGGACATGG-CATCGA-CA-TTTGATGA
* *
98012270 GAGCTAGTGTAAGACCATGTCTAGGACAAGGCATC
1 GAGCCAGTGTAAGACCATGT-T-GGACATGGCATC
98012305 AGCCTCGACA
Statistics
Matches: 183, Mismatches: 19, Indels: 39
0.76 0.08 0.16
Matches are distributed among these distances:
43 2 0.01
44 1 0.01
45 27 0.15
46 51 0.28
47 25 0.14
48 74 0.40
49 2 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (45 bp):
GAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTTGATGA
Found at i:98012297 original size:141 final size:142
Alignment explanation
Indices: 98012028--98012355 Score: 366
Period size: 141 Copynumber: 2.3 Consensus size: 142
98012018 CATTTGGGGT
* * * * *
98012028 GACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTCATATGCCAGTGT
1 GACATGTGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACATATCAGATGCCAGTGT
* *
98012093 AAGACCAAGTTTGAAACATGGCATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTGGACAT
66 AAGACCAAGTTTGAAACATGGCATCGACTATGTTACGAGAGCCAGTGTAAGACCATGTTGGACAA
*
98012158 GGCATC-GACATT
131 GGCATCAG-CATC
* * * *
98012170 GA-TTGTGAGCCAGTGTAAAACCATGTTTAGGACATGGCATCGGCCACTATATGAGA-GCCAGTG
1 GACATGTGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCAC-ATATCAGATGCCAGTG
* * * *
98012233 TAAGACCATG-TTG-GACATGGTC-TC-AGC-ATTTTGACGAGAGCTAGTGTAAGACCATGTCTA
65 TAAGACCAAGTTTGAAACATGG-CATCGA-CTATGTT-ACGAGAGCCAGTGTAAGACCATGT-T-
*
98012293 GGACAAGGCATCAGCCTC
125 GGACAAGGCATCAGCATC
* *
98012311 GACATGTGAGCCAATGTAATACCATGTCTGGGACATGGCATCGGC
1 GACATGTGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGC
98012356 AATTCACCCA
Statistics
Matches: 156, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
138 5 0.03
139 31 0.20
140 5 0.03
141 70 0.45
142 45 0.29
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (142 bp):
GACATGTGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACATATCAGATGCCAGTGT
AAGACCAAGTTTGAAACATGGCATCGACTATGTTACGAGAGCCAGTGTAAGACCATGTTGGACAA
GGCATCAGCATC
Found at i:98012329 original size:94 final size:93
Alignment explanation
Indices: 98012127--98012353 Score: 262
Period size: 94 Copynumber: 2.4 Consensus size: 93
98012117 CGACTATGTT
* *
98012127 ATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTGATTGTGAGCCAGTGTAAAACC
1 ATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTGATCGAGAGCCAGTGTAAAACC
* * * * *
98012192 ATGTTTAGGACATGGCATCGGCCACTAT
66 ATGTCTAGGACAAGGCATCAGCCACGAC
*
98012220 ATGAGAGCCAGTGTAAGACCATGTTGGACATGGTC-TC-AGCATTTTGA-CGAGAGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTTGGACATGG-CATCGA-CA--TTGATCGAGAGCCAGTGTAA
* *
98012282 GACCATGTCTAGGACAAGGCATCAGCCTCGAC
62 AACCATGTCTAGGACAAGGCATCAGCCACGAC
* * *
98012314 ATGTGAGCCAATGTAATACCATGTCTGGGACATGGCATCG
1 ATGAGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCG
98012354 GCAATTCACC
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
92 1 0.01
93 37 0.33
94 59 0.52
95 6 0.05
96 10 0.09
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (93 bp):
ATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACATTGATCGAGAGCCAGTGTAAAACC
ATGTCTAGGACAAGGCATCAGCCACGAC
Found at i:98016579 original size:40 final size:40
Alignment explanation
Indices: 98016520--98016626 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
98016510 CAATTGAATG
* * * *
98016520 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
98016560 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
98016600 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
98016627 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:98016646 original size:40 final size:39
Alignment explanation
Indices: 98016561--98016687 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
98016551 CTGGAAATTA
* * *
98016561 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
98016599 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
98016641 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
98016681 TATCCGG
1 TATCCGG
98016688 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:98023736 original size:48 final size:46
Alignment explanation
Indices: 98023674--98023894 Score: 223
Period size: 48 Copynumber: 4.7 Consensus size: 46
98023664 TTCGTATGCT
**
98023674 AGTGTAAGACCATGTTTGGAACATGGCATCGGCTATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGC-ATGAGATGAGAGCC
* * * *
98023722 AGTGTAAGACCATG-TTGGATATGGCATCGACATTGA-CTGTGAGCC
1 AGTGTAAGACCATGTTTGGACATGGCATCGGCA-TGAGATGAGAGCC
* * * ** *
98023767 AGTGTAACACCATGTTTGGGACATGGCGTCAGCCACCATATGAGAGCC
1 AGTGTAAGACCATGTTT-GGACATGGCATC-GGCATGAGATGAGAGCC
* *
98023815 AGTGTAAGACCATG-TTGGACATGGCATCGACATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGACATGGCATCGGCA-TGAGATGAGAGCC
*
98023861 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCA
98023895 ATTCATCCTC
Statistics
Matches: 143, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
45 24 0.17
46 49 0.34
47 17 0.12
48 53 0.37
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTTTGGACATGGCATCGGCATGAGATGAGAGCC
Found at i:98023791 original size:93 final size:94
Alignment explanation
Indices: 98023674--98023893 Score: 316
Period size: 93 Copynumber: 2.4 Consensus size: 94
98023664 TTCGTATGCT
* * ***
98023674 AGTGTAAGACCATGTTTGGAACATGGCATCGGCTATGTTATGAGAGCCAGTGTAAGACCATGTTG
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACCATATGAGAGCCAGTGTAAGACCATGTTG
* * *
98023739 GATATGGCATCGACATTGA-CTGTGAGCC
66 GACATGGCATCGACATTGAGATGAGAGCC
* * *
98023767 AGTGTAACACCATGTTTGGGACATGGCGTCAGCCACCATATGAGAGCCAGTGTAAGACCATGTTG
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACCATATGAGAGCCAGTGTAAGACCATGTTG
*
98023832 GACATGGCATCGACATTGAGATGAGAGCT
66 GACATGGCATCGACATTGAGATGAGAGCC
*
98023861 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
98023894 AATTCATCCT
Statistics
Matches: 110, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
93 75 0.68
94 35 0.32
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACCATATGAGAGCCAGTGTAAGACCATGTTG
GACATGGCATCGACATTGAGATGAGAGCC
Found at i:98023856 original size:46 final size:46
Alignment explanation
Indices: 98023674--98023891 Score: 235
Period size: 46 Copynumber: 4.6 Consensus size: 46
98023664 TTCGTATGCT
* *
98023674 AGTGTAAGACCATGTTTGGAACATGGCATCGGC-TATGTTATGAGAGCC
1 AGTGTAAGACCATG-TTGG-ACATGGCATCGACAT-TGATATGAGAGCC
* * *
98023722 AGTGTAAGACCATGTTGGATATGGCATCGACATTGA-CTGTGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGACATTGATATGAGAGCC
* * * **
98023767 AGTGTAACACCATGTTTGGGACATGGCGTCAGCCA-CCATATGAGAGCC
1 AGTGTAAGACCATG-TT-GGACATGGCATC-GACATTGATATGAGAGCC
* *
98023815 AGTGTAAGACCATGTTGGACATGGCATCGACATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGACATTGATATGAGAGCC
98023861 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGT-T-GGACATGGCATCG
98023892 GCAATTCATC
Statistics
Matches: 142, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 23 0.16
46 50 0.35
47 19 0.13
48 50 0.35
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTTGGACATGGCATCGACATTGATATGAGAGCC
Found at i:98025587 original size:28 final size:28
Alignment explanation
Indices: 98025522--98025620 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
98025512 TCATGAATTG
* * *
98025522 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
98025551 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
98025579 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
98025607 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98025621 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:98033325 original size:28 final size:28
Alignment explanation
Indices: 98033260--98033358 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
98033250 TCATGAATTG
* * *
98033260 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
98033289 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
98033317 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
98033345 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98033359 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:98035296 original size:40 final size:40
Alignment explanation
Indices: 98035200--98035352 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
98035190 CGAATGGTAT
* * * * *
98035200 CCGGGCTAAGTCCCGAAGGCTTTTGTACTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
98035241 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
98035281 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
98035321 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
98035353 CGCTATATCC
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
40 69 0.74
41 24 0.26
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:98040012 original size:48 final size:47
Alignment explanation
Indices: 98039908--98040174 Score: 169
Period size: 48 Copynumber: 5.7 Consensus size: 47
98039898 ATGGATATGT
* *
98039908 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACAATATAAGA
* * * *
98039954 GCTAGTGTAAGACCATGTTTGGGACATGGCATTG-GCATTAATATAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACCA-CAATATAAGA
* * * *
98040002 GCTAGTGTAAGACATGTCTAGGACAT-GCATCAACCTCGAGATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCAC-A-ATAT-AAGA
* * * * *
98040050 GCTAGTGTAAAACTTGTCTGGGACATGGCATCGGCTTGAC-ATGT--G-
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGAC--CACAATATAAGA
* * *
98040095 TC-AGCT-TAAGACCTGTCTGGGACATGGCATCGA-CACCGATAGATAAGA
1 GCTAG-TGTAAGACATGTCTGGGACATGGCATCGACCA-C-A-ATATAAGA
* * *
98040143 GCCAGTGCAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGGCATC
98040175 AGCCTCGATA
Statistics
Matches: 169, Mismatches: 31, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
44 26 0.15
45 4 0.02
46 16 0.09
47 30 0.18
48 57 0.34
49 33 0.20
51 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACAATATAAGA
Found at i:98040184 original size:49 final size:49
Alignment explanation
Indices: 98040102--98040215 Score: 135
Period size: 49 Copynumber: 2.3 Consensus size: 49
98040092 GTGTCAGCTT
98040102 AAGACCTGTCTGGGACATGGCATCGACACCGATAGAT-AAGAGCCAGTGC
1 AAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAA-AGCCAGTGC
* ** *
98040151 AAGACCTGTCTGGGACATGGCATC-AGC-CTCGATATATGAAAGTTAGTGT
1 AAGACCTGTCTGGGACATGGCATCGA-CAC-CGATAGATGAAAGCCAGTGC
*
98040200 AAGATCTGTCTGGGAC
1 AAGACCTGTCTGGGAC
98040216 TTCGCATGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
48 2 0.04
49 53 0.93
50 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
AAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAGTGC
Found at i:98042864 original size:29 final size:29
Alignment explanation
Indices: 98042832--98042963 Score: 228
Period size: 29 Copynumber: 4.5 Consensus size: 29
98042822 ATAGTGAATC
98042832 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
98042861 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
**
98042891 CGCACACTTAGTGCTATATATTTTCATTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
98042920 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
98042949 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98042964 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 70 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:98042973 original size:59 final size:59
Alignment explanation
Indices: 98042832--98042963 Score: 230
Period size: 59 Copynumber: 2.3 Consensus size: 59
98042822 ATAGTGAATC
98042832 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
** *
98042891 CGCACACTTAGTGCTATATATTTTCATTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
98042949 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98042964 GTACAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
58 24 0.34
59 46 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:98050745 original size:30 final size:29
Alignment explanation
Indices: 98050690--98050820 Score: 228
Period size: 29 Copynumber: 4.5 Consensus size: 29
98050680 ATAGTGAATC
98050690 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
98050719 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
98050749 CGCACACTTAGTGCTATATATTTTCA-TT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
98050777 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
98050806 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98050821 GTACAATTTT
Statistics
Matches: 99, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
28 27 0.27
29 43 0.43
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:98067209 original size:19 final size:17
Alignment explanation
Indices: 98067191--98067225 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
98067181 TCATTCATTA
98067191 AAATATATAATATATATT
1 AAAT-TATAATATATATT
*
98067209 AAATTATCATATATATT
1 AAATTATAATATATATT
98067226 TACTACAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATTATAATATATATT
Found at i:98070429 original size:49 final size:51
Alignment explanation
Indices: 98070301--98070442 Score: 184
Period size: 49 Copynumber: 2.9 Consensus size: 51
98070291 TCTATTGTGA
* *
98070301 GGTCGCA--TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGT
* * * * **
98070350 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGT
98070399 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
98070443 TAGCTTCGGC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 45 0.57
50 1 0.01
51 33 0.42
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGT
Found at i:98072497 original size:57 final size:57
Alignment explanation
Indices: 98072406--98072522 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 57
98072396 TGTCATAAGT
* *
98072406 ATGATTTGTTCGAGTAGATGAATGGATAAGTCAAGCTATCCAGAAAACATAGGATGC
1 ATGATTTGTTCGAGCAGATGAATGGATAAATCAAGCTATCCAGAAAACATAGGATGC
98072463 ATGATTTGTTCGAGCAGATGAATGGATAAATCAAGCTATCCAGAAAACATAGGATGC
1 ATGATTTGTTCGAGCAGATGAATGGATAAATCAAGCTATCCAGAAAACATAGGATGC
98072520 ATG
1 ATG
98072523 CATAATTATA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.26
Consensus pattern (57 bp):
ATGATTTGTTCGAGCAGATGAATGGATAAATCAAGCTATCCAGAAAACATAGGATGC
Found at i:98073519 original size:15 final size:16
Alignment explanation
Indices: 98073496--98073543 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
98073486 TAGTATCGTA
98073496 TCTTGGGTTTCTTTAT
1 TCTTGGGTTTCTTTAT
98073512 TC-TGGGTTT-TTCTA-
1 TCTTGGGTTTCTT-TAT
*
98073526 TCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTAT
98073542 TC
1 TC
98073544 AGTTTTCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
14 4 0.15
15 17 0.63
16 6 0.22
ACGTcount: A:0.08, C:0.15, G:0.17, T:0.60
Consensus pattern (16 bp):
TCTTGGGTTTCTTTAT
Found at i:98075797 original size:49 final size:48
Alignment explanation
Indices: 98075673--98075816 Score: 189
Period size: 49 Copynumber: 2.9 Consensus size: 48
98075663 TCTATTGTGA
* *
98075673 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-C--AGACTGT
* * * * *
98075724 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
98075773 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
98075817 TAGCTTCGGC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
48 5 0.06
49 40 0.50
50 1 0.01
51 34 0.43
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:98078137 original size:68 final size:67
Alignment explanation
Indices: 98078065--98078214 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
98078055 CATCATGTGT
* * * *
98078065 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
98078127 ATGTAG
62 ATGTAG
** * *
98078133 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
98078198 AG
66 AG
98078200 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
98078215 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:98078170 original size:64 final size:64
Alignment explanation
Indices: 98078089--98078272 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
98078079 AGACATTATG
* *
98078089 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
98078153 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
98078218 AA
63 AA
* * * *
98078220 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
98078273 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:98079364 original size:2 final size:2
Alignment explanation
Indices: 98079357--98079389 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
98079347 TCATGACATG
98079357 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98079390 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98084454 original size:40 final size:40
Alignment explanation
Indices: 98084405--98084555 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
98084395 ATAACCACGT
*
98084405 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
98084445 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAGAATG--TCTC
* * *
98084485 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
98084524 AGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATA
98084556 TCATTCAATT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.91
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
Found at i:98084539 original size:80 final size:80
Alignment explanation
Indices: 98084405--98084554 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
98084395 ATAACCACGT
* *
98084405 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
98084470 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
98084485 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
98084548 CCCGGAT
64 CCCGGAT
98084555 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:98091649 original size:40 final size:40
Alignment explanation
Indices: 98091604--98091771 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
98091594 CGGAATATAA
98091604 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
98091644 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
98091684 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
98091724 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
98091764 CCGGATAT
1 CCGGATAT
98091772 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98091754 original size:80 final size:80
Alignment explanation
Indices: 98091620--98091769 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
98091610 ATAACCACGT
* *
98091620 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
98091685 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
98091700 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
98091763 CCCGGAT
64 CCCGGAT
98091770 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:98094597 original size:24 final size:24
Alignment explanation
Indices: 98094565--98094637 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
98094555 TGAAATACCA
*
98094565 ACCTTTTCATT-ACTATCATTTTTG
1 ACCTTTTCATTGA-TATCATTTTCG
* *
98094589 ACCTTTTCATTGATTTCCTTTTCG
1 ACCTTTTCATTGATATCATTTTCG
*
98094613 ACCTTTTCATTGATATCCTTTTCG
1 ACCTTTTCATTGATATCATTTTCG
98094637 A
1 A
98094638 ATAACGTCCT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.07, T:0.52
Consensus pattern (24 bp):
ACCTTTTCATTGATATCATTTTCG
Found at i:98094688 original size:40 final size:40
Alignment explanation
Indices: 98094604--98094742 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
98094594 TTCATTGATT
* * *
98094604 TCCTTTTCGACCTTTTCA-TTGATATCCTTTTCGA-ATAAC
1 TCCTTTTCAAACTTTTCATTTGATATCCTTTTAGATAT-AC
*
98094643 GTCCTTTTCAACCTTTTCATTTGATATCCTTTTTAGATATA-
1 -TCCTTTTCAAACTTTTCATTTGATATCC-TTTTAGATATAC
* * * * *
98094684 TCCTTTTCAAAATTTTCATGTGTTATCCCTTTCAGGTA-ACC
1 TCCTTTTCAAACTTTTCATTTGATAT-CCTTTTAGATATA-C
98094725 TCCTTTTCAAACTTTTCA
1 TCCTTTTCAAACTTTTCA
98094743 AGTATTTAGA
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
39 1 0.01
40 46 0.55
41 28 0.33
42 7 0.08
43 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.07, T:0.47
Consensus pattern (40 bp):
TCCTTTTCAAACTTTTCATTTGATATCCTTTTAGATATAC
Found at i:98099172 original size:26 final size:26
Alignment explanation
Indices: 98099143--98099252 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
98099133 TGGTACAAAT
98099143 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
98099169 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98099195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98099221 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
98099247 TGATAA
1 TGATAA
98099253 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:98100929 original size:29 final size:26
Alignment explanation
Indices: 98100865--98100982 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 26
98100855 ATGGAGGAAG
* *
98100865 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-ATTATC
*
98100892 TGATCTGGTGGCTCTGCCACATATATATC
1 TGTTCTGGTGGCTCTGCCAC--AT-TATC
98100921 TGTTCTGGTGGCTCTGCCACGATTATC
1 TGTTCTGGTGGCTCTGCCAC-ATTATC
* *
98100948 TGTATCTGGTGACTCTGTCACATTATC
1 TGT-TCTGGTGGCTCTGCCACATTATC
98100975 TGTTCTGG
1 TGTTCTGG
98100983 CAGCCATACT
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
26 5 0.06
27 34 0.43
28 18 0.22
29 23 0.29
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACATTATC
Found at i:98109850 original size:93 final size:93
Alignment explanation
Indices: 98109738--98109908 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
98109728 GCCCATAAGT
* *
98109738 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98109803 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
98109831 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98109896 CGAGTTCGGATGC
66 CGAGTTCGGATGC
98109909 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98109924 original size:46 final size:46
Alignment explanation
Indices: 98109730--98109910 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
98109720 TGTAACCCGC
* * *
98109730 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98109776 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98109826 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
98109869 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
98109911 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98112712 original size:40 final size:40
Alignment explanation
Indices: 98112626--98112729 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
98112616 GCTAGTAATT
* * *
98112626 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* * *
98112666 AAATCCGGTCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* * *
98112706 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
98112730 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
Found at i:98120883 original size:40 final size:40
Alignment explanation
Indices: 98120747--98120900 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
98120737 GTGTGCATGA
* *
98120747 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
98120787 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
98120827 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
98120867 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
98120901 CTTGGTGCGG
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:98123059 original size:11 final size:11
Alignment explanation
Indices: 98123043--98123069 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98123033 GACCCCAAAA
98123043 TTGAAAATCTC
1 TTGAAAATCTC
98123054 TTGAAAATCTC
1 TTGAAAATCTC
98123065 TTGAA
1 TTGAA
98123070 TGTTGTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (11 bp):
TTGAAAATCTC
Found at i:98128817 original size:27 final size:26
Alignment explanation
Indices: 98128759--98128860 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
98128749 CTGGTCACCA
* *
98128759 TGCCACAAATATCTATTTCTGGTGGCTA
1 TGCCAC-AATATCT-GTTCTGGTGGCTC
*
98128787 TGCCACAAATATCTGTTCTGGTGGTTC
1 TGCCAC-AATATCTGTTCTGGTGGCTC
* *
98128814 TGCCACAATATCTGTATGTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGGCTC
*
98128841 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
98128861 CAGCCATGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 13 0.20
27 38 0.58
28 14 0.22
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGGCTC
Found at i:98130939 original size:30 final size:30
Alignment explanation
Indices: 98130903--98131033 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
98130893 GACAAGATTG
* * * * *
98130903 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
98130933 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
98130961 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98130991 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98131020 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98131034 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:98130994 original size:58 final size:58
Alignment explanation
Indices: 98130903--98131033 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
98130893 GACAAGATTG
* * * * * *
98130903 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
98130961 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
98131020 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98131034 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:98139766 original size:12 final size:13
Alignment explanation
Indices: 98139738--98139766 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
98139728 CTTTTTAACT
98139738 AACTAACTACTTC
1 AACTAACTACTTC
98139751 AACTAACTAC-TC
1 AACTAACTACTTC
98139763 AACT
1 AACT
98139767 GCTATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (13 bp):
AACTAACTACTTC
Found at i:98140139 original size:26 final size:26
Alignment explanation
Indices: 98140110--98140191 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
98140100 TGATAAAAAT
*
98140110 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98140136 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98140162 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98140188 TGAT
1 TGAT
98140192 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98141835 original size:27 final size:26
Alignment explanation
Indices: 98141786--98141890 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
98141776 AGGAAGCGTC
* *
98141786 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
* *
98141813 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
98141840 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
98141867 CTGGTGACTCTGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
98141891 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 7 0.10
27 60 0.88
28 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:98149126 original size:58 final size:58
Alignment explanation
Indices: 98149058--98149174 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
98149048 TTTAAGTAGA
98149058 GTTGTTTGTAAAATAATGTCAGAATGGGCCT-ATCGGTCTGGTGGTTAAGTGGAGTGTT
1 GTTGTTTGTAAAATAATGTCAGAATGGGCCTAAT-GGTCTGGTGGTTAAGTGGAGTGTT
98149116 GTTGTTTGTAAAATAATGTCAGAATGGGCCTAATGGTCTGGTGGTTAAGTGGAGTGTT
1 GTTGTTTGTAAAATAATGTCAGAATGGGCCTAATGGTCTGGTGGTTAAGTGGAGTGTT
98149174 G
1 G
98149175 GTGTGAGGGA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 56 0.97
59 2 0.03
ACGTcount: A:0.23, C:0.08, G:0.33, T:0.36
Consensus pattern (58 bp):
GTTGTTTGTAAAATAATGTCAGAATGGGCCTAATGGTCTGGTGGTTAAGTGGAGTGTT
Found at i:98152616 original size:28 final size:28
Alignment explanation
Indices: 98152576--98152632 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
98152566 CAAATGTAAC
98152576 ATAAAACCGGAAGCTGTTCATATTTAAT
1 ATAAAACCGGAAGCTGTTCATATTTAAT
* *
98152604 ATAAAACTGGAAGCTGTTCGTATTTAAT
1 ATAAAACCGGAAGCTGTTCATATTTAAT
98152632 A
1 A
98152633 GCACAGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (28 bp):
ATAAAACCGGAAGCTGTTCATATTTAAT
Found at i:98157603 original size:38 final size:38
Alignment explanation
Indices: 98157552--98157667 Score: 180
Period size: 38 Copynumber: 3.1 Consensus size: 38
98157542 AGAAGCATAA
98157552 TGTTATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCAG
1 TGTTATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCAG
* * *
98157590 TGTTATTTGGGCTCTATGCCTAGCAGGCTTTGTGCCAT
1 TGTTATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCAG
* *
98157628 TGTTATTCGGGCTCTGTGCCTAACAGGC-TTGTGCCGG
1 TGTTATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCAG
98157665 TGT
1 TGT
98157668 ATTGAAAGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
37 10 0.14
38 60 0.86
ACGTcount: A:0.11, C:0.22, G:0.30, T:0.36
Consensus pattern (38 bp):
TGTTATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCAG
Found at i:98159189 original size:55 final size:55
Alignment explanation
Indices: 98159125--98159231 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
98159115 TTATAGATTA
* *
98159125 CAAATTAATTAGTT-ATGAGCCCTATTCAAATTAAAAGTGATGATTTATCATCTTG
1 CAAATTAATTA-TTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTG
* * *
98159180 CAAATTAATTATTCATAAGCATTATTTAAATTAAAAGTGGTGATTTATCATC
1 CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATC
98159232 CAATGAATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 2 0.04
55 44 0.96
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTG
Found at i:98159730 original size:34 final size:34
Alignment explanation
Indices: 98159687--98159757 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
98159677 GATTGGATGA
98159687 TTCAAACTTCAATCATTGGAAGGACAAGATGTTG
1 TTCAAACTTCAATCATTGGAAGGACAAGATGTTG
98159721 TTCAAACTTCAATCATTGGAAGGACAAGATGTTG
1 TTCAAACTTCAATCATTGGAAGGACAAGATGTTG
98159755 TTC
1 TTC
98159758 CTTCTTAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (34 bp):
TTCAAACTTCAATCATTGGAAGGACAAGATGTTG
Found at i:98163201 original size:25 final size:25
Alignment explanation
Indices: 98163148--98163218 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
98163138 AATGCTTATA
* *
98163148 TGAGCACATA-AACGAGAAGCTCTTT
1 TGAGC-CATATAACGAGAAGCTCATG
98163173 TGAGCCATATAACGAGAAGCTCATG
1 TGAGCCATATAACGAGAAGCTCATG
* *
98163198 TGAGTCATGTAAC-AGGAAGCT
1 TGAGCCATATAACGA-GAAGCT
98163219 TCGAAAAGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.12
25 35 0.88
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (25 bp):
TGAGCCATATAACGAGAAGCTCATG
Found at i:98163326 original size:25 final size:26
Alignment explanation
Indices: 98163296--98163369 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
98163286 AAAGCTCTGG
98163296 AGAGCCATTAA-CAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
98163321 AGAGCCTTTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
98163347 AGAGCCATTTATCGGGACGCTCA
1 AGAGCCATTAATCAGGAAGCTCA
98163370 TAAGAGCTAC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 10 0.23
26 33 0.77
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:98163493 original size:25 final size:25
Alignment explanation
Indices: 98163437--98163523 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
98163427 GAAGAGCTAT
* * *
98163437 TAACGGGAAGCTCACAAGAACCATA
1 TAACGGGAAGCTCATAAGAGCCAAA
*
98163462 TAACGGGAAGCTCATGAGAGCCAAA
1 TAACGGGAAGCTCATAAGAGCCAAA
* * *
98163487 TATCGGGATGCTCATAAGAG-CTAA
1 TAACGGGAAGCTCATAAGAGCCAAA
*
98163511 TAACGGGACGCTC
1 TAACGGGAAGCTC
98163524 TTTCGGGCTG
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
24 14 0.27
25 38 0.73
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (25 bp):
TAACGGGAAGCTCATAAGAGCCAAA
Found at i:98165750 original size:19 final size:19
Alignment explanation
Indices: 98165726--98165814 Score: 134
Period size: 17 Copynumber: 4.9 Consensus size: 19
98165716 ATAATCTTCA
98165726 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98165745 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98165764 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
98165781 ATGGTA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98165798 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
98165815 AGATATGATT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
17 31 0.47
18 10 0.15
19 25 0.38
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:98166127 original size:17 final size:17
Alignment explanation
Indices: 98166103--98166137 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98166093 TGTTTTCTTG
*
98166103 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
98166121 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
98166138 GTATTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:98167511 original size:23 final size:23
Alignment explanation
Indices: 98167485--98167528 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
98167475 TGCAGTACTA
98167485 AAAGGAATTCATAGGATTTTTGG
1 AAAGGAATTCATAGGATTTTTGG
**
98167508 AAAGGAATTTGTAGGATTTTT
1 AAAGGAATTCATAGGATTTTT
98167529 TACTATCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.02, G:0.25, T:0.39
Consensus pattern (23 bp):
AAAGGAATTCATAGGATTTTTGG
Found at i:98167584 original size:104 final size:104
Alignment explanation
Indices: 98167400--98167593 Score: 289
Period size: 104 Copynumber: 1.9 Consensus size: 104
98167390 GTATCGATCA
* * * * * *
98167400 TTGGAAAGGAATTTGTAGGATTTTTGGCTGTCTTAAGAAAACAAAACATTTGGGATTATTCTATA
1 TTGGAAAGGAATTTGTAGGATTTTTGACTATCTTAAGAAAACAAAAAATATAGGATTACTCTATA
**
98167465 GTAATTATCGTGCAGTACTAAAAGGAATTCATAGGATTT
66 GTAATTATCACGCAGTACTAAAAGGAATTCATAGGATTT
* *
98167504 TTGGAAAGGAATTTGTAGGATTTTTTACTATCTTAAGAAAATAAAAAATATAGGATTACTCTATA
1 TTGGAAAGGAATTTGTAGGATTTTTGACTATCTTAAGAAAACAAAAAATATAGGATTACTCTATA
*
98167569 GTAATTATCACGCAGTACTAGAAGG
66 GTAATTATCACGCAGTACTAAAAGG
98167594 TTACTTGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 79 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (104 bp):
TTGGAAAGGAATTTGTAGGATTTTTGACTATCTTAAGAAAACAAAAAATATAGGATTACTCTATA
GTAATTATCACGCAGTACTAAAAGGAATTCATAGGATTT
Found at i:98170718 original size:14 final size:15
Alignment explanation
Indices: 98170690--98170719 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98170680 CACAGGAACT
98170690 TCAAAAACCACAAAC
1 TCAAAAACCACAAAC
98170705 TCAAAAACCA-AAAC
1 TCAAAAACCACAAAC
98170719 T
1 T
98170720 ACTCTGGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.60, C:0.30, G:0.00, T:0.10
Consensus pattern (15 bp):
TCAAAAACCACAAAC
Found at i:98177020 original size:21 final size:20
Alignment explanation
Indices: 98176996--98177047 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 20
98176986 TTATGCCACA
98176996 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
98177017 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
98177037 TCAGTATTTTA
1 TCAGTATTTTA
98177048 ATTTGGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 22 0.76
21 7 0.24
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:98178153 original size:2 final size:2
Alignment explanation
Indices: 98178146--98178174 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98178136 TATTTTGCAT
98178146 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98178175 GTGTGATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98179113 original size:32 final size:33
Alignment explanation
Indices: 98179056--98179121 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
98179046 AGACCTAGAC
*
98179056 AAATATTTTTTTTAAAATTTGTTATCTGTTAAA
1 AAATATTTTTTCTAAAATTTGTTATCTGTTAAA
* *
98179089 AAATA-TTTTTCTAAGATTTTTTATCTGTTAAA
1 AAATATTTTTTCTAAAATTTGTTATCTGTTAAA
98179121 A
1 A
98179122 GTTATTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 25 0.83
33 5 0.17
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (33 bp):
AAATATTTTTTCTAAAATTTGTTATCTGTTAAA
Found at i:98183633 original size:17 final size:17
Alignment explanation
Indices: 98183611--98183643 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98183601 AATTGAGAAC
*
98183611 TATTTTTTTCAAATAAG
1 TATTTTCTTCAAATAAG
98183628 TATTTTCTTCAAATAA
1 TATTTTCTTCAAATAA
98183644 TTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (17 bp):
TATTTTCTTCAAATAAG
Found at i:98184344 original size:14 final size:15
Alignment explanation
Indices: 98184325--98184359 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
98184315 GAAAATTTTA
*
98184325 TTATTTG-TTAAAAT
1 TTATTTGCTCAAAAT
98184339 TTATTTGCTCAAAAT
1 TTATTTGCTCAAAAT
98184354 TTATTT
1 TTATTT
98184360 TTCAAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (15 bp):
TTATTTGCTCAAAAT
Found at i:98184364 original size:14 final size:15
Alignment explanation
Indices: 98184325--98184367 Score: 63
Period size: 14 Copynumber: 3.0 Consensus size: 15
98184315 GAAAATTTTA
98184325 TTATTTGTT-AAAAT
1 TTATTTGTTCAAAAT
*
98184339 TTATTTGCTCAAAAT
1 TTATTTGTTCAAAAT
98184354 TTATTT-TTCAAAAT
1 TTATTTGTTCAAAAT
98184368 ACATTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (15 bp):
TTATTTGTTCAAAAT
Found at i:98184437 original size:197 final size:193
Alignment explanation
Indices: 98184102--98184470 Score: 533
Period size: 197 Copynumber: 1.9 Consensus size: 193
98184092 ATCAATTTGG
** * *
98184102 TTTTTTACTTTGATATTCTTGAATTTTTTATTATTTGTTAAATTTTATTTACTTAATTTTTTTTC
1 TTTTTTACTTTGATATTCTTGAAAATTTTATTATTTGTTAAAATTTATTTACTAAATTTTTTTTC
* * * ** * *
98184167 AAAATATATTTTTAAGGTTAATTCGACATTTTTGAGTGTTGAATTCAGTGCATTATCAAATTATT
66 AAAATACATTTTTAAGGTTAACTCAACACCTTTGAGTGTTGAATACAGTGCATTATCAAATCATT
* *
98184232 ATAAGAGTGCATCCACTATATGTTAGGAGAAAAGGATTGTTGTGACGTCTCAATTTTTATTTT
131 ATAAGAGTGCATCCACTATATGTCAAGAGAAAAGGATTGTTGTGACGTCTCAATTTTTATTTT
* *
98184295 TTTTTTACTTTGATATTGTTGAAAATTTTATTATTTGTTAAAATTTATTTGCTCAAAATTTATTT
1 TTTTTTACTTTGATATTCTTGAAAATTTTATTATTTGTTAAAATTTATTTACT--AAATTT-TTT
*
98184360 TTCAAAATACATTTTTAAAGGTTAACTCAACACCTTTGAGTGTTGAGA-ACAGTGCGTTATCAAA
63 TTCAAAATACATTTTT-AAGGTTAACTCAACACCTTTGAGTGTTGA-ATACAGTGCATTATCAAA
*
98184424 TCATTATAAGAGTGCATTCACTATATGTCAAGAGAAAAGGATTGTTG
126 TCATTATAAGAGTGCATCCACTATATGTCAAGAGAAAAGGATTGTTG
98184471 AAACACCCTA
Statistics
Matches: 154, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
193 48 0.31
195 5 0.03
196 18 0.12
197 82 0.53
198 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (193 bp):
TTTTTTACTTTGATATTCTTGAAAATTTTATTATTTGTTAAAATTTATTTACTAAATTTTTTTTC
AAAATACATTTTTAAGGTTAACTCAACACCTTTGAGTGTTGAATACAGTGCATTATCAAATCATT
ATAAGAGTGCATCCACTATATGTCAAGAGAAAAGGATTGTTGTGACGTCTCAATTTTTATTTT
Found at i:98185641 original size:23 final size:24
Alignment explanation
Indices: 98185615--98185766 Score: 100
Period size: 23 Copynumber: 6.7 Consensus size: 24
98185605 TTTTAAAAAA
* *
98185615 TTTAAA-ATGTATATTTGAAATAT
1 TTTAAATATATATTTTTGAAATAT
*
98185638 TTTATAATATATATTTTTTAAA-AT
1 TTTA-AATATATATTTTTGAAATAT
98185662 TTTAAATATATATTTTTGAAATTAT
1 TTTAAATATATATTTTTGAAA-TAT
* *
98185687 TTT---TATA-AATTTTAAATATTATT
1 TTTAAATATATATTTTTGAA-A-TA-T
98185710 TTTAAAT-TAT-TTTTT-AAA-AT
1 TTTAAATATATATTTTTGAAATAT
98185730 TTTAAATACTAT-TTTTT-AAATA-
1 TTTAAATA-TATATTTTTGAAATAT
98185752 -TTAAATATAT-TTTTT
1 TTTAAATATATATTTTT
98185767 AATAATATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 29
0.75 0.05 0.20
Matches are distributed among these distances:
20 16 0.15
21 15 0.14
22 19 0.17
23 26 0.24
24 10 0.09
25 22 0.20
26 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTAAATATATATTTTTGAAATAT
Found at i:98185670 original size:33 final size:32
Alignment explanation
Indices: 98185634--98185750 Score: 137
Period size: 34 Copynumber: 3.4 Consensus size: 32
98185624 TATATTTGAA
98185634 ATATTTTATAATATATATTTTTTAAAATTTTAAATAT
1 ATATTTT-TAA-AT-TATTTTTTAAAATTTT-AA-AT
98185671 ATATTTTTGAAATTA-TTTTTATAAATTTTAAAT
1 ATATTTTT-AAATTATTTTTTA-AAATTTTAAAT
98185704 ATTATTTTTAAATTATTTTTTAAAATTTTAAAT
1 A-TATTTTTAAATTATTTTTTAAAATTTTAAAT
98185737 ACTATTTTTTAAAT
1 A-TA-TTTTTAAAT
98185751 ATTAAATATA
Statistics
Matches: 74, Mismatches: 1, Indels: 13
0.84 0.01 0.15
Matches are distributed among these distances:
33 23 0.31
34 30 0.41
35 9 0.12
36 3 0.04
37 9 0.12
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (32 bp):
ATATTTTTAAATTATTTTTTAAAATTTTAAAT
Found at i:98185683 original size:22 final size:21
Alignment explanation
Indices: 98185646--98185768 Score: 101
Period size: 21 Copynumber: 5.6 Consensus size: 21
98185636 ATTTTATAAT
98185646 ATATATTTTTTAAAATTTTAA
1 ATATATTTTTTAAAATTTTAA
*
98185667 ATATATATTTTTGAAATTATTTT-T
1 ATATAT-TTTTT-AAA--ATTTTAA
* *
98185691 ATA-AATTTTAAATATTATTTTTAA
1 ATATATTTTTTAA-A--A-TTTTAA
98185715 AT-TATTTTTTAAAATTTTAA
1 ATATATTTTTTAAAATTTTAA
*
98185735 ATACTATTTTTT-AAATATTAA
1 ATA-TATTTTTTAAAATTTTAA
98185756 ATATATTTTTTAA
1 ATATATTTTTTAA
98185769 TAATATAAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 22
0.74 0.06 0.19
Matches are distributed among these distances:
20 16 0.19
21 21 0.25
22 21 0.25
23 9 0.11
24 12 0.14
25 5 0.06
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.58
Consensus pattern (21 bp):
ATATATTTTTTAAAATTTTAA
Found at i:98185703 original size:20 final size:19
Alignment explanation
Indices: 98185675--98185768 Score: 74
Period size: 20 Copynumber: 4.9 Consensus size: 19
98185665 AAATATATAT
98185675 TTTTGAAATTATTTTTATAAA
1 TTTT-AAATTATTTTT-TAAA
*
98185696 TTTTAAA-TA-TTATT---
1 TTTTAAATTATTTTTTAAA
98185710 -TTTAAATTATTTTTTAAAA
1 TTTTAAATTATTTTTT-AAA
98185729 TTTTAAATACTATTTTTTAAA
1 TTTTAAAT--TATTTTTTAAA
*
98185750 TATTAAATATATTTTTTAA
1 TTTTAAAT-TATTTTTTAA
98185769 TAATATAAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
13 6 0.10
14 2 0.03
15 4 0.07
17 1 0.02
18 3 0.05
19 2 0.03
20 20 0.33
21 14 0.23
22 8 0.13
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (19 bp):
TTTTAAATTATTTTTTAAA
Found at i:98185710 original size:34 final size:33
Alignment explanation
Indices: 98185652--98185750 Score: 139
Period size: 33 Copynumber: 2.9 Consensus size: 33
98185642 TAATATATAT
98185652 TTTTTA-AAATTTTAAATATATATTTTTGAAATTA
1 TTTTTATAAATTTTAAATAT-TATTTTT-AAATTA
98185686 TTTTTATAAATTTTAAATATTATTTTTAAATTA
1 TTTTTATAAATTTTAAATATTATTTTTAAATTA
*
98185719 TTTTT-TAAAATTTTAAATACTATTTTTTAAAT
1 TTTTTAT-AAATTTTAAATATTA-TTTTTAAAT
98185751 ATTAAATATA
Statistics
Matches: 61, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
32 1 0.02
33 25 0.41
34 22 0.36
35 13 0.21
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (33 bp):
TTTTTATAAATTTTAAATATTATTTTTAAATTA
Found at i:98185727 original size:12 final size:11
Alignment explanation
Indices: 98185672--98185723 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
98185662 TTTAAATATA
98185672 TATTTTTGAAAT
1 TATTTTT-AAAT
98185684 TATTTTTATAA-
1 TATTTTTA-AAT
*
98185695 -ATTTTAAATAT
1 TATTTTTAA-AT
98185706 TATTTTTAAAT
1 TATTTTTAAAT
98185717 TATTTTT
1 TATTTTT
98185724 TAAAATTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 1 0.03
10 7 0.21
11 10 0.29
12 16 0.47
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
TATTTTTAAAT
Found at i:98185773 original size:22 final size:21
Alignment explanation
Indices: 98185646--98185781 Score: 98
Period size: 22 Copynumber: 6.2 Consensus size: 21
98185636 ATTTTATAAT
*
98185646 ATATATTTTTTAAAATTTTAA
1 ATATATTTTTTAAAATATTAA
* *
98185667 ATATATATTTTTGAAATTATT-T
1 ATATAT-TTTTT-AAAATATTAA
* **
98185689 TTATAAATTTTAAATATTATTTTTAA
1 ATATATTTTTTAAA-A-TA---TTAA
*
98185715 AT-TATTTTTTAAAATTTTAA
1 ATATATTTTTTAAAATATTAA
98185735 ATACTATTTTTT-AAATATTAA
1 ATA-TATTTTTTAAAATATTAA
*
98185756 ATATATTTTTTAATAATATAAA
1 ATATATTTTTTAA-AATATTAA
98185778 ATAT
1 ATAT
98185782 TTAAATATTT
Statistics
Matches: 89, Mismatches: 14, Indels: 23
0.71 0.11 0.18
Matches are distributed among these distances:
20 17 0.19
21 22 0.25
22 30 0.34
23 7 0.08
24 1 0.01
25 11 0.12
26 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.56
Consensus pattern (21 bp):
ATATATTTTTTAAAATATTAA
Found at i:98185781 original size:20 final size:20
Alignment explanation
Indices: 98185712--98185783 Score: 78
Period size: 20 Copynumber: 3.5 Consensus size: 20
98185702 ATATTATTTT
*
98185712 TAAAT-TATTTTTTAAAATTT
1 TAAATATATTTTTTAAAA-TA
98185732 TAAATACTATTTTTT-AAATA
1 TAAATA-TATTTTTTAAAATA
98185752 TTAAATATATTTTTTAATAATA
1 -TAAATATATTTTTTAA-AATA
98185774 TAAA-ATATTT
1 TAAATATATTT
98185784 AAATATTTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
20 20 0.43
21 14 0.30
22 12 0.26
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (20 bp):
TAAATATATTTTTTAAAATA
Found at i:98185850 original size:137 final size:136
Alignment explanation
Indices: 98185682--98185989 Score: 360
Period size: 137 Copynumber: 2.3 Consensus size: 136
98185672 TATTTTTGAA
* *
98185682 ATTATTTTTATAA-ATTTTAAA-TATTATTTTTAAATTATTTTTTAAAATTTTAAATACTATTTT
1 ATTAGTTTTATAATATTTTAAATTA-TA-TTTTAAATTATTTTATAAAATTTTAAAT-CTATTTT
* *
98185745 TTAA-ATATTAAA-TAT-ATTTTTTAATAATATAAAATAT-TTAAATATTTTAAAGATATGACCT
63 ATAATATATTAAATTATAATTTTTAAATAATATAAAATATATT--AT-TTTTAAAGATATGACCT
*
98185806 TTTAAATTTATT
125 TTCAAATTTATT
* * ** * *
98185818 ATTAGTTTTATAATATTTTAAATGTATATTTTAATTTGTTTTATAATTTTTTCAATTTATTTTAT
1 ATTAGTTTTATAATATTTTAAAT-TATATTTTAAATTATTTTATAAAATTTTAAATCTATTTTAT
* * *
98185883 AATATTTTAAATTATAATTTTTAAATTATTTAAAATATATTATTTTTAAAGATATGACCTTTCAA
65 AATATATTAAATTATAATTTTTAAATAATATAAAATATATTATTTTTAAAGATATGACCTTTCAA
98185948 ATTTATT
130 ATTTATT
* *
98185955 ATTTGTTTTATAATATTTTAAA-TATTTTTTAAATT
1 ATTAGTTTTATAATATTTTAAATTATATTTTAAATT
98185990 TTAAATATAA
Statistics
Matches: 148, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
135 11 0.07
136 21 0.14
137 86 0.58
138 7 0.05
139 21 0.14
140 2 0.01
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (136 bp):
ATTAGTTTTATAATATTTTAAATTATATTTTAAATTATTTTATAAAATTTTAAATCTATTTTATA
ATATATTAAATTATAATTTTTAAATAATATAAAATATATTATTTTTAAAGATATGACCTTTCAAA
TTTATT
Found at i:98185875 original size:21 final size:20
Alignment explanation
Indices: 98185843--98185897 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
98185833 TTTTAAATGT
*
98185843 ATATTTTAATTTGTTTTATA
1 ATATTTTAATTTATTTTATA
*
98185863 ATTTTTTCAATTTATTTTATA
1 ATATTTT-AATTTATTTTATA
*
98185884 ATATTTTAAATTAT
1 ATATTTTAATTTAT
98185898 AATTTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
ATATTTTAATTTATTTTATA
Found at i:98185904 original size:14 final size:15
Alignment explanation
Indices: 98185879--98185911 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
98185869 TCAATTTATT
98185879 TTATAATATTTTAAA
1 TTATAATATTTTAAA
98185894 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
98185908 TTAT
1 TTAT
98185912 TTAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:98185912 original size:24 final size:24
Alignment explanation
Indices: 98185877--98185932 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
98185867 TTTCAATTTA
*
98185877 TTTTATAATATTTTAAAT-TATAAT
1 TTTTA-AATATTTAAAATATATAAT
*
98185901 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAA-TATTTAAAATATATAAT
98185926 TTTTAAA
1 TTTTAAA
98185933 GATATGACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 14 0.50
25 12 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTAAATATTTAAAATATATAAT
Found at i:98186003 original size:12 final size:13
Alignment explanation
Indices: 98185986--98186035 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
98185976 ATATTTTTTA
98185986 AATTTTAAATA-T
1 AATTTTAAATATT
98185998 AATTTTTATAAATTATT
1 AA--TTT-TAAA-TATT
98186015 AATTTTAAA-ATT
1 AATTTTAAATATT
98186027 AATTTTAAA
1 AATTTTAAA
98186036 AATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 14 0.42
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:98186089 original size:11 final size:11
Alignment explanation
Indices: 98186074--98186124 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
98186064 TTCAATATCT
*
98186074 TTAAAAACAAT
1 TTAAAAACAAA
98186085 TTAAAAATCATAA
1 TTAAAAA-CA-AA
98186098 TT-AAAA-AAA
1 TTAAAAACAAA
98186107 TTATAAAACAAA
1 TTA-AAAACAAA
98186119 TTAAAA
1 TTAAAA
98186125 TATACATTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
9 4 0.12
10 1 0.03
11 14 0.41
12 12 0.35
13 3 0.09
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (11 bp):
TTAAAAACAAA
Found at i:98186225 original size:20 final size:19
Alignment explanation
Indices: 98186200--98186285 Score: 90
Period size: 19 Copynumber: 4.6 Consensus size: 19
98186190 TTTTATATTA
*
98186200 TTAAAAATATATTTAATAT
1 TTAAAAATATATTTAAAAT
98186219 TTAAAAATAATATTTAAAAT
1 TTAAAAAT-ATATTTAAAAT
* *
98186239 TTAAAAAAATAATTT-CAA-
1 TTAAAAATAT-ATTTAAAAT
*
98186257 --AAATATATATTTAAAAT
1 TTAAAAATATATTTAAAAT
98186274 TTAAAAATATAT
1 TTAAAAATATAT
98186286 ATTATAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
15 4 0.07
16 8 0.15
19 21 0.39
20 21 0.39
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAT
Found at i:98186231 original size:13 final size:13
Alignment explanation
Indices: 98186213--98186237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98186203 AAAATATATT
98186213 TAATATTTAAAAA
1 TAATATTTAAAAA
98186226 TAATATTTAAAA
1 TAATATTTAAAA
98186238 TTTAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:98186246 original size:22 final size:20
Alignment explanation
Indices: 98186200--98186295 Score: 91
Period size: 20 Copynumber: 5.0 Consensus size: 20
98186190 TTTTATATTA
*
98186200 TTAAAAAT-ATATTTAATAT
1 TTAAAAATAATATTTAAAAT
98186219 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
98186239 TT-AAAA-AA-A--T--AAT
1 TTAAAAATAATATTTAAAAT
98186252 TTCAAAAATATATATTTAAAAT
1 TT-AAAAATA-ATATTTAAAAT
98186274 TTAAAAATATATATTATAAAAT
1 TTAAAAATA-ATATT-TAAAAT
98186296 ATTTCAAATG
Statistics
Matches: 65, Mismatches: 1, Indels: 19
0.76 0.01 0.22
Matches are distributed among these distances:
13 5 0.08
15 5 0.08
16 1 0.02
17 2 0.03
18 3 0.05
19 12 0.18
20 13 0.20
21 13 0.20
22 11 0.17
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAAAAATAATATTTAAAAT
Found at i:98186281 original size:21 final size:23
Alignment explanation
Indices: 98186249--98186295 Score: 80
Period size: 21 Copynumber: 2.1 Consensus size: 23
98186239 TTAAAAAAAT
98186249 AATTTCAAAAATATATATT-TAA
1 AATTTCAAAAATATATATTATAA
98186271 AATTT-AAAAATATATATTATAA
1 AATTTCAAAAATATATATTATAA
98186293 AAT
1 AAT
98186296 ATTTCAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTTCAAAAATATATATTATAA
Found at i:98186295 original size:35 final size:35
Alignment explanation
Indices: 98186214--98186297 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
98186204 AAATATATTT
98186214 AATAT-TTA-AAAATA-ATATTTAAAATTTAAAAA
1 AATATATTATAAAATATATATTTAAAATTTAAAAA
98186246 AATA-ATT-TCAAAAATATATATTTAAAATTTAAAAA
1 AATATATTAT--AAAATATATATTTAAAATTTAAAAA
*
98186281 TATATATTATAAAATAT
1 AATATATTATAAAATAT
98186298 TTCAAATGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
32 6 0.14
34 6 0.14
35 28 0.64
36 3 0.07
37 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (35 bp):
AATATATTATAAAATATATATTTAAAATTTAAAAA
Found at i:98186385 original size:10 final size:9
Alignment explanation
Indices: 98186378--98186442 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 9
98186368 AGACAAAACT
98186378 TAAAAAAAG
1 TAAAAAAAG
*
98186387 TAAAAAAAAA
1 T-AAAAAAAG
* *
98186397 TGACAAAAG
1 TAAAAAAAG
98186406 TAAAGAAAAG
1 TAAA-AAAAG
98186416 TAAAAAGAA-
1 TAAAAA-AAG
*
98186425 AAAAACAAAG
1 TAAAA-AAAG
98186435 TAAAAAAA
1 TAAAAAAA
98186443 TAACAGGGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
9 19 0.44
10 24 0.56
ACGTcount: A:0.77, C:0.03, G:0.11, T:0.09
Consensus pattern (9 bp):
TAAAAAAAG
Found at i:98186402 original size:29 final size:30
Alignment explanation
Indices: 98186360--98186442 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 30
98186350 ATAAATAAAT
*
98186360 AAAGATAAA-GACAAAACTTAAA-AAAAGTAA
1 AAAGA-AAATGACAAAA-GTAAAGAAAAGTAA
98186390 AAA-AAAATGACAAAAGTAAAGAAAAGTAA
1 AAAGAAAATGACAAAAGTAAAGAAAAGTAA
**
98186419 AAAGAAAAAAAC-AAAGTAAA-AAAA
1 AAAGAAAATGACAAAAGTAAAGAAAA
98186443 TAACAGGGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 11 0.23
29 27 0.57
30 9 0.19
ACGTcount: A:0.75, C:0.05, G:0.11, T:0.10
Consensus pattern (30 bp):
AAAGAAAATGACAAAAGTAAAGAAAAGTAA
Found at i:98187915 original size:11 final size:11
Alignment explanation
Indices: 98187899--98187943 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
98187889 TAGATAATAT
98187899 TATTTTATTAA
1 TATTTTATTAA
*
98187910 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
98187923 TATTTTATTAT
1 TATTTTATTAA
98187934 TATTTTATTA
1 TATTTTATTA
98187944 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:98187924 original size:30 final size:29
Alignment explanation
Indices: 98187870--98187937 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
98187860 GATATTTTGA
*
98187870 TATTTTA-TAATTATTTAATTAGATAATAT
1 TATTTTATTAATTATTTAATAAGAT-ATAT
*
98187899 TATTTTATTAA-TATTTTAATAAGATATTT
1 TATTTTATTAATTA-TTTAATAAGATATAT
98187928 TATTATTATT
1 TATT-TTATT
98187938 TTATTAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 16 0.47
30 18 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (29 bp):
TATTTTATTAATTATTTAATAAGATATAT
Found at i:98190186 original size:46 final size:46
Alignment explanation
Indices: 98190119--98190465 Score: 471
Period size: 46 Copynumber: 7.7 Consensus size: 46
98190109 TGGCAACCTG
98190119 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
98190165 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
98190203 TGTGTAAGACCATGGTTGACAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
98190249 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAA-A
* *
98190295 TGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
98190341 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
98190387 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * * *
98190433 TGAGTAAGATCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
98190466 TCACGTCAAA
Statistics
Matches: 273, Mismatches: 17, Indels: 22
0.88 0.05 0.07
Matches are distributed among these distances:
38 35 0.13
41 2 0.01
43 2 0.01
45 3 0.01
46 230 0.84
47 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Done.