Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 328 of 378
Found at i:99734118 original size:20 final size:19
Alignment explanation
Indices: 99734089--99734208 Score: 79
Period size: 20 Copynumber: 6.3 Consensus size: 19
99734079 ATGCTGATTC
*
99734089 TTTTTCATAATTTTATATAA
1 TTTTTAATAATTTT-TATAA
*
99734109 TTTTTAATAA-TTTTCT-A
1 TTTTTAATAATTTTTATAA
**
99734126 TTTTTAAT-ATTGTTTGCAA
1 TTTTTAATAATT-TTTATAA
*
99734145 TTTTT-ATAAGTTTTTA-CA
1 TTTTTAATAA-TTTTTATAA
* *
99734163 TTTTTATATTATTTTAAATAA
1 TTTTTA-ATAATTTT-TATAA
*
99734184 ATTTTAATATATTTTTATAA
1 TTTTTAATA-ATTTTTATAA
99734204 TTTTT
1 TTTTT
99734209 CCTTTTTATA
Statistics
Matches: 77, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
16 1 0.01
17 10 0.13
18 13 0.17
19 17 0.22
20 25 0.32
21 11 0.14
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTTAATAATTTTTATAA
Found at i:99734149 original size:19 final size:17
Alignment explanation
Indices: 99734107--99734168 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
99734097 AATTTTATAT
99734107 AATTTTTAATAATTTTC
1 AATTTTTAATAATTTTC
* *
99734124 TATTTTTAATATTGTTTGC
1 AATTTTTAATAAT-TTT-C
*
99734143 AATTTTT-ATAAGTTTTT
1 AATTTTTAATAA-TTTTC
99734160 ACATTTTTA
1 A-ATTTTTA
99734169 TATTATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 12 0.34
18 15 0.43
19 8 0.23
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (17 bp):
AATTTTTAATAATTTTC
Found at i:99734277 original size:23 final size:23
Alignment explanation
Indices: 99734251--99734306 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
99734241 TTTTACAAAT
*
99734251 TTTTTTAAAAAAATTT-TATATTA
1 TTTTTTAAAAAAATTTCCATA-TA
* *
99734274 TTTTTTAGATAAATTTCCATATA
1 TTTTTTAAAAAAATTTCCATATA
99734297 -TTTTTAAAAA
1 TTTTTTAAAAA
99734307 TTCTATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 8 0.30
23 16 0.59
24 3 0.11
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTTTTAAAAAAATTTCCATATA
Found at i:99734318 original size:18 final size:17
Alignment explanation
Indices: 99734297--99734335 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
99734287 TTTCCATATA
*
99734297 TTTTTAAAAATTCTATT
1 TTTTTTAAAATTCTATT
*
99734314 TTTTTTGAAATTCTATT
1 TTTTTTAAAATTCTATT
99734331 TTTTT
1 TTTTT
99734336 ATAAGTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTTAAAATTCTATT
Found at i:99737026 original size:12 final size:12
Alignment explanation
Indices: 99737009--99737033 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99736999 AGCAAGTCTA
99737009 AGGCACATTCTC
1 AGGCACATTCTC
99737021 AGGCACATTCTC
1 AGGCACATTCTC
99737033 A
1 A
99737034 ACACATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (12 bp):
AGGCACATTCTC
Found at i:99739473 original size:16 final size:17
Alignment explanation
Indices: 99739443--99739475 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
99739433 TAATTTTACT
99739443 ATTATTTTATATTATCA
1 ATTATTTTATATTATCA
*
99739460 ATTA-TTTATTTTATCA
1 ATTATTTTATATTATCA
99739476 TATATCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTATTTTATATTATCA
Found at i:99739479 original size:26 final size:26
Alignment explanation
Indices: 99739450--99739508 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
99739440 ACTATTATTT
99739450 TATATTATCAATTATTTATTTTA-TCA
1 TATATTATCAATTA-TTATTTTATTCA
* **
99739476 TATATCATTTATTATTATTTTATTCA
1 TATATTATCAATTATTATTTTATTCA
99739502 TAATATT
1 T-ATATT
99739509 TACAGACATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 8 0.30
26 15 0.56
27 4 0.15
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (26 bp):
TATATTATCAATTATTATTTTATTCA
Found at i:99741980 original size:38 final size:39
Alignment explanation
Indices: 99741937--99742011 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
99741927 CTCTCAATCA
*
99741937 TATAAACAGTAATTCATTC-GATAATAGTAACTCATCTC
1 TATAAACAGTAATTCATTCAGATAACAGTAACTCATCTC
* * *
99741975 TATAAACAGTACTTCATTCATATAACAGTAATTCATC
1 TATAAACAGTAATTCATTCAGATAACAGTAACTCATC
99742012 CGTGTAACAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.35
Consensus pattern (39 bp):
TATAAACAGTAATTCATTCAGATAACAGTAACTCATCTC
Found at i:99742003 original size:19 final size:19
Alignment explanation
Indices: 99741937--99742010 Score: 80
Period size: 19 Copynumber: 3.9 Consensus size: 19
99741927 CTCTCAATCA
99741937 TATAAACAGTAATTCATTC
1 TATAAACAGTAATTCATTC
* * *
99741956 GAT-AATAGTAACTCATCTC
1 TATAAACAGTAATTCAT-TC
*
99741975 TATAAACAGTACTTCATTC
1 TATAAACAGTAATTCATTC
99741994 -ATATAACAGTAATTCAT
1 TATA-AACAGTAATTCAT
99742011 CCGTGTAACA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
18 14 0.32
19 20 0.45
20 10 0.23
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.35
Consensus pattern (19 bp):
TATAAACAGTAATTCATTC
Found at i:99742272 original size:11 final size:11
Alignment explanation
Indices: 99742256--99742289 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
99742246 TTCGAGTCAG
99742256 AAAAATATTTT
1 AAAAATATTTT
99742267 AAAAATATTTT
1 AAAAATATTTT
*
99742278 AAAATTATTTT
1 AAAAATATTTT
99742289 A
1 A
99742290 TGTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:99743675 original size:53 final size:53
Alignment explanation
Indices: 99743614--99743766 Score: 227
Period size: 53 Copynumber: 2.8 Consensus size: 53
99743604 CCTGGAAGTA
* *
99743614 TATG-TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTGAGTCCATGTT
1 TATGTTGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTT
*
99743666 TATGTTGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGTCCACGTT
1 TATGTTGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTT
* *
99743719 TCATACGTTGGCATCGATATGTGATTCTGATATATGTGTGTGAGTAAG
1 T-AT--GTTGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAG
99743767 ACCCTGTCTG
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 4 0.04
53 46 0.51
54 2 0.02
56 39 0.43
ACGTcount: A:0.23, C:0.12, G:0.27, T:0.37
Consensus pattern (53 bp):
TATGTTGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTT
Found at i:99744030 original size:2 final size:2
Alignment explanation
Indices: 99744025--99744089 Score: 96
Period size: 2 Copynumber: 32.5 Consensus size: 2
99744015 GTACATGAAC
* *
99744025 AT AT AT AT AT AT AT AT AT AT AT AT AT GT -T CAT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
99744067 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
99744090 ATCGGTTATA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
1 1 0.02
2 56 0.97
3 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:99744030 original size:18 final size:18
Alignment explanation
Indices: 99744004--99744068 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
99743994 AAAATGATAA
*
99744004 AACAAATATATGTACATG
1 AACATATATATGTACATG
* *
99744022 AACATATATATATATAT-
1 AACATATATATGTACATG
* *
99744039 ATATATATATATGTTCATG
1 A-ACATATATATGTACATG
* *
99744058 TATATATATAT
1 AACATATATAT
99744069 ATATATATAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
17 1 0.03
18 36 0.97
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
AACATATATATGTACATG
Found at i:99744208 original size:2 final size:2
Alignment explanation
Indices: 99744201--99744231 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
99744191 AAGTATAAGT
99744201 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
99744232 GAAATGTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99745304 original size:2 final size:2
Alignment explanation
Indices: 99745297--99745337 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
99745287 ATTATGTCTG
*
99745297 AT AT AT AT AT A- AT -T TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99745337 A
1 A
99745338 CTAGTTTAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:99752657 original size:20 final size:20
Alignment explanation
Indices: 99752608--99752657 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
99752598 ATATGCTATG
* *
99752608 ATATGTTATGCTATGTTACA
1 ATATGTTATGATATGATACA
* *
99752628 AAATGGTATGATATGATACA
1 ATATGTTATGATATGATACA
99752648 ATATGTTATG
1 ATATGTTATG
99752658 TTATAATAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (20 bp):
ATATGTTATGATATGATACA
Found at i:99760249 original size:50 final size:49
Alignment explanation
Indices: 99760133--99760259 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
99760123 AGTTGTCGAT
* * * *
99760133 GCCATGTCTTAGACATGGTTTTACACTAGCTATCATCACCGAGGCCGAT
1 GCCATGTCCTAGACATGGTCTTACACTAGCTATCATCACCGAGGCCAAC
* * *
99760182 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCG-TGCCAAC
1 GCCATGTCCTAGACATGGTCTTACACTAGCTATCATC--A-CCGAGGCCAAC
*
99760232 GCCATGTCCTAGACATGGTCCTACACTA
1 GCCATGTCCTAGACATGGTCTTACACTA
99760260 ACACATTTCG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 31 0.47
50 31 0.47
51 3 0.05
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (49 bp):
GCCATGTCCTAGACATGGTCTTACACTAGCTATCATCACCGAGGCCAAC
Found at i:99760339 original size:46 final size:45
Alignment explanation
Indices: 99760272--99760400 Score: 134
Period size: 46 Copynumber: 2.8 Consensus size: 45
99760262 ACATTTCGTA
* *
99760272 GTCGATACATGTCCTAAACATGTCTTACACTGGCTTACGTCCCAAG
1 GTCGATGCATGTCCTAGACATGTCTTACACTGGCTT-CGTCCCAAG
* * * *
99760318 GTCGATGCATGTCAC-AGACATGTCTTACACTAGCACTCGTCTCAAT
1 GTCGATGCATGTC-CTAGACATGTCTTACACTGGC-TTCGTCCCAAG
* *
99760364 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCT
1 GTCGATG-CATGTCCTAGACAT-GTCTTACACTGGCT
99760401 CTCATAATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
46 43 0.63
47 14 0.21
48 11 0.16
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GTCGATGCATGTCCTAGACATGTCTTACACTGGCTTCGTCCCAAG
Found at i:99762842 original size:31 final size:31
Alignment explanation
Indices: 99762807--99762870 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
99762797 CCTTTTCATG
99762807 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
99762838 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
99762869 TT
1 TT
99762871 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:99763141 original size:23 final size:23
Alignment explanation
Indices: 99763061--99763179 Score: 159
Period size: 23 Copynumber: 5.0 Consensus size: 23
99763051 TGCTTTATCA
*
99763061 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
99763085 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
99763109 CAATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
99763133 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
99763156 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
99763179 T
1 T
99763180 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 44 0.52
24 29 0.34
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:99763255 original size:20 final size:20
Alignment explanation
Indices: 99763230--99763289 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
99763220 TATGATTACC
99763230 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
99763250 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
99763270 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
99763290 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:99763260 original size:11 final size:11
Alignment explanation
Indices: 99763230--99763284 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
99763220 TATGATTACC
99763230 TCATGTGCATA
1 TCATGTGCATA
*
99763241 TCA--TACATA
1 TCATGTGCATA
99763250 TCATGTGCATA
1 TCATGTGCATA
* *
99763261 TCA--TACATT
1 TCATGTGCATA
99763270 TCATGTGCATA
1 TCATGTGCATA
99763281 TCAT
1 TCAT
99763285 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99763364 original size:25 final size:25
Alignment explanation
Indices: 99763332--99763379 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99763322 ATACATAAAC
* * *
99763332 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99763357 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99763380 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99770919 original size:31 final size:31
Alignment explanation
Indices: 99770881--99770945 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
99770871 GCCCTTTTCA
99770881 TTTTCATATTCCATAACACTGGGCCGAAGCC
1 TTTTCATATTCCATAACACTGGGCCGAAGCC
* **
99770912 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTTCATATTCCATAACACTGGGCCGAAGCC
99770943 TTT
1 TTT
99770946 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (31 bp):
TTTTCATATTCCATAACACTGGGCCGAAGCC
Found at i:99771187 original size:24 final size:24
Alignment explanation
Indices: 99771136--99771254 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
99771126 GCTTTATCAT
*
99771136 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
99771161 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
99771185 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
99771208 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
99771232 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99771255 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:99771215 original size:47 final size:48
Alignment explanation
Indices: 99771136--99771254 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
99771126 GCTTTATCAT
*
99771136 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
99771185 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
99771232 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99771255 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:99771330 original size:20 final size:20
Alignment explanation
Indices: 99771305--99771364 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
99771295 TATGATTACC
99771305 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
99771325 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
99771345 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
99771365 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:99771335 original size:11 final size:11
Alignment explanation
Indices: 99771305--99771359 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
99771295 TATGATTACC
99771305 TCATGTGCATA
1 TCATGTGCATA
*
99771316 TCA--TACATA
1 TCATGTGCATA
99771325 TCATGTGCATA
1 TCATGTGCATA
* *
99771336 TCA--TACATT
1 TCATGTGCATA
99771345 TCATGTGCATA
1 TCATGTGCATA
99771356 TCAT
1 TCAT
99771360 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99771439 original size:25 final size:25
Alignment explanation
Indices: 99771407--99771454 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99771397 ATACATAAAC
* * *
99771407 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99771432 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99771455 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99778142 original size:20 final size:20
Alignment explanation
Indices: 99778117--99778176 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
99778107 TATGATTACC
99778117 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
99778137 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
99778157 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
99778177 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:99778147 original size:11 final size:11
Alignment explanation
Indices: 99778117--99778171 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
99778107 TATGATTACC
99778117 TCATGTGCATA
1 TCATGTGCATA
*
99778128 TCA--TACATA
1 TCATGTGCATA
99778137 TCATGTGCATA
1 TCATGTGCATA
* *
99778148 TCA--TACATT
1 TCATGTGCATA
99778157 TCATGTGCATA
1 TCATGTGCATA
99778168 TCAT
1 TCAT
99778172 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99785772 original size:30 final size:31
Alignment explanation
Indices: 99785738--99785800 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
99785728 CCTTTTCATG
99785738 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
99785768 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
99785799 TT
1 TT
99785801 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:99786042 original size:24 final size:24
Alignment explanation
Indices: 99785991--99786109 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
99785981 GCTTTATCAT
*
99785991 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
99786016 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
99786040 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
99786063 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
99786087 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99786110 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:99786070 original size:47 final size:48
Alignment explanation
Indices: 99785991--99786109 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
99785981 GCTTTATCAT
*
99785991 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
99786040 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
99786087 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99786110 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:99786185 original size:20 final size:20
Alignment explanation
Indices: 99786160--99786219 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
99786150 TATGATTACC
99786160 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
99786180 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
99786200 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
99786220 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:99786190 original size:11 final size:11
Alignment explanation
Indices: 99786160--99786214 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
99786150 TATGATTACC
99786160 TCATGTGCATA
1 TCATGTGCATA
*
99786171 TCA--TACATA
1 TCATGTGCATA
99786180 TCATGTGCATA
1 TCATGTGCATA
* *
99786191 TCA--TACATT
1 TCATGTGCATA
99786200 TCATGTGCATA
1 TCATGTGCATA
99786211 TCAT
1 TCAT
99786215 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99786294 original size:25 final size:25
Alignment explanation
Indices: 99786262--99786309 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99786252 ATACATAAAC
* * *
99786262 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99786287 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99786310 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99790885 original size:46 final size:46
Alignment explanation
Indices: 99790833--99791014 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
99790823 AGTGTGCTCT
* * *
99790833 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* *
99790879 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* * *
99790925 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
* * * *
99790971 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
99791015 TCATGTCAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGC
Found at i:99802438 original size:25 final size:26
Alignment explanation
Indices: 99802406--99802463 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
99802396 CACTTTTATC
99802406 TTCA-TTTATCTT-ATTTAAGTACT-T
1 TTCATTTTATCTTCATTTAA-TACTAT
*
99802430 TTTATTTTATCTTCATTTAATACTAT
1 TTCATTTTATCTTCATTTAATACTAT
99802456 TTCATTTT
1 TTCATTTT
99802464 TAGGTTTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 12 0.41
26 14 0.48
ACGTcount: A:0.24, C:0.12, G:0.02, T:0.62
Consensus pattern (26 bp):
TTCATTTTATCTTCATTTAATACTAT
Found at i:99802954 original size:16 final size:16
Alignment explanation
Indices: 99802930--99802965 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
99802920 TTGAATTTTG
*
99802930 TCTTGTTCTCAAATAA
1 TCTTATTCTCAAATAA
99802946 TCTTATTCTCAAATAA
1 TCTTATTCTCAAATAA
99802962 TCTT
1 TCTT
99802966 CTCATATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
TCTTATTCTCAAATAA
Found at i:99808885 original size:46 final size:46
Alignment explanation
Indices: 99808835--99809010 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
99808825 TGGTTGAGCA
*
99808835 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
99808881 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
99808928 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
99808974 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99809011 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:99808991 original size:93 final size:93
Alignment explanation
Indices: 99808832--99809003 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
99808822 GGATGGTTGA
* * *
99808832 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
99808897 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
99808925 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
99808990 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
99809004 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:99812861 original size:55 final size:54
Alignment explanation
Indices: 99812777--99812905 Score: 154
Period size: 55 Copynumber: 2.4 Consensus size: 54
99812767 CCGTGTTAAC
* *
99812777 TTGACAGGTTCACCCACGGATGATGGGCACGGGTGTGTCGCATGCCCGTGCTAG-T
1 TTGACAGGTTCACCCACGGATGA-GGGCACGGGCGTGTCGAATGCCCGTG-TAGTT
* * *
99812832 TTGACAGGTTCACCCATGGTTTCGA-GGCACGGGCGTGTCGAATGCCCGTGTTGTT
1 TTGACAGGTTCACCCACGG-AT-GAGGGCACGGGCGTGTCGAATGCCCGTGTAGTT
*
99812887 TTGGCAGGTTCACCCACGG
1 TTGACAGGTTCACCCACGG
99812906 CCATGTCGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 2 0.03
55 59 0.92
56 1 0.02
57 2 0.03
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.26
Consensus pattern (54 bp):
TTGACAGGTTCACCCACGGATGAGGGCACGGGCGTGTCGAATGCCCGTGTAGTT
Found at i:99812917 original size:55 final size:53
Alignment explanation
Indices: 99812777--99812923 Score: 143
Period size: 55 Copynumber: 2.7 Consensus size: 53
99812767 CCGTGTTAAC
* *
99812777 TTGACAGGTTCACCCACGGATGATGGGCACGGGTGTGTCGCATGCCCGTGCTAGT
1 TTGACAGGTTCACCCACGGATG-T-GGCACGGGCGTGTCGAATGCCCGTGCTAGT
* * * *
99812832 TTGACAGGTTCACCCATGGTTTCGAGGCACGGGCGTGTCGAATGCCCGTG-TTGTT
1 TTGACAGGTTCACCCACGG-AT-GTGGCACGGGCGTGTCGAATGCCCGTGCTAG-T
* * *
99812887 TTGGCAGGTTCACCCACGGCCATGTCGCACGGTCGTG
1 TTGACAGGTTCACCCACGG--ATGTGGCACGGGCGTG
99812924 GCGACTTTAT
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
54 2 0.03
55 70 0.93
56 2 0.03
57 1 0.01
ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25
Consensus pattern (53 bp):
TTGACAGGTTCACCCACGGATGTGGCACGGGCGTGTCGAATGCCCGTGCTAGT
Found at i:99819420 original size:46 final size:48
Alignment explanation
Indices: 99819178--99819444 Score: 239
Period size: 46 Copynumber: 5.6 Consensus size: 48
99819168 ACGGACAAGT
* *
99819178 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAACTA-TCATCACCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TCGA
* ** * *
99819227 GGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACT--CATCT-CGA
* *
99819277 TGCCAATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATTTCG-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGA
* * * * *
99819322 TAGCCAATG-CATGTCCCAAACAT-GTCTTACACTGGC-TTACGTCCCGA
1 T-GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACT-CATCTCGA
* * *
99819369 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGA
*
99819415 TGCCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
99819445 TACTGGCTCT
Statistics
Matches: 178, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 58 0.33
47 15 0.08
48 7 0.04
49 35 0.20
50 31 0.17
51 5 0.03
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGA
Found at i:99819438 original size:138 final size:144
Alignment explanation
Indices: 99819179--99819449 Score: 376
Period size: 138 Copynumber: 1.9 Consensus size: 144
99819169 CGGACAAGTT
* *
99819179 GCCAATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCACCGAGGCTGATGCCATGTCCC
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAACTATCATCACCGAGGCCGATGCCATGTCCC
* **
99819244 AGACATGGTCTTACACTAGCTCTCACATATCCGTGCCAATGCCATGTCCCAGACATGGTCTTACA
66 AGACATGGTCTTACACTAGCACT-ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACA
99819309 CTGACACATTTCGTA
130 CTGACACATTTCGTA
** *
99819324 GCCAATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACGTC-CCGAGGCCGATG-CATGTCC
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAACTAT-CATCACCGAGGCCGATGCCATGTCC
* * *
99819384 CAGACAT-GTCTTACACTAGCACT-CATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTATA
65 CAGACATGGTCTTACACTAGCACTACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACA
99819447 CTG
130 CTG
99819450 GCTCTTATAA
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 38 0.33
140 15 0.13
141 14 0.12
142 12 0.11
143 15 0.13
144 13 0.11
145 7 0.06
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (144 bp):
GCCAATGCCATGTCCCAAACATGGTCTTACACTAACTATCATCACCGAGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCACTACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACAC
TGACACATTTCGTA
Found at i:99819885 original size:30 final size:31
Alignment explanation
Indices: 99819827--99819886 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
99819817 GAAAATTCAC
* * *
99819827 ACTTTCGGTAAAATGACCATTTCGCCCCTAG
1 ACTTTCGGCAAAATGAACATTTCACCCCTAG
*
99819858 ACTTT-GGCAAAATGAACATTTTACCCCTA
1 ACTTTCGGCAAAATGAACATTTCACCCCTA
99819887 AGCTCGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (31 bp):
ACTTTCGGCAAAATGAACATTTCACCCCTAG
Found at i:99824229 original size:26 final size:25
Alignment explanation
Indices: 99824200--99824256 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
99824190 AAATCCCTAG
*
99824200 TTTTTCTCCTTTTCTTTCTCTTTTTC
1 TTTTTCTCCTTTTC-TTCTCTATTTC
* *
99824226 TTTTCTTTCTTTTTCTTCTCTATTTC
1 TTTT-TCTCCTTTTCTTCTCTATTTC
*
99824252 GTTTT
1 TTTTT
99824257 AACTTTGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 17 0.65
27 8 0.31
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTTTCTCCTTTTCTTCTCTATTTC
Found at i:99824230 original size:17 final size:16
Alignment explanation
Indices: 99824208--99824239 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
99824198 AGTTTTTCTC
99824208 CTTTTCTTTCTCTTTTT
1 CTTTTCTTTCT-TTTTT
99824225 CTTTTCTTTCTTTTT
1 CTTTTCTTTCTTTTT
99824240 CTTCTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTCTTTCTTTTTT
Found at i:99824251 original size:21 final size:21
Alignment explanation
Indices: 99824210--99824251 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
99824200 TTTTTCTCCT
*
99824210 TTTCTTTCTCTTTTTCTTTTC
1 TTTCTTTCTCTTTCTCTTTTC
*
99824231 TTTCTTTTTC-TTCTCTATTTC
1 TTTCTTTCTCTTTCTCT-TTTC
99824252 GTTTTAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTCTTTCTCTTTCTCTTTTC
Found at i:99824269 original size:22 final size:22
Alignment explanation
Indices: 99824244--99824299 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
99824234 CTTTTTCTTC
99824244 TCTATTTCGT-TTTAACTTTGTT
1 TCTATTT-GTATTTAACTTTGTT
*
99824266 TCTATTTTTATTTAACTTTGTT
1 TCTATTTGTATTTAACTTTGTT
*
99824288 TCTATTTTTATT
1 TCTATTTGTATT
99824300 CTTTTTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.16, C:0.11, G:0.05, T:0.68
Consensus pattern (22 bp):
TCTATTTGTATTTAACTTTGTT
Found at i:99827451 original size:40 final size:40
Alignment explanation
Indices: 99827393--99827496 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
99827383 TGAATGATAC
* * *
99827393 CCGGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
**
99827433 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
*
99827473 CTGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTT
99827497 GTGCAAGCTA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 54 0.96
41 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:99827515 original size:40 final size:40
Alignment explanation
Indices: 99827435--99827539 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
99827425 GATTATATCC
* * * *** *
99827435 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCT
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGCTACCAAATCT
99827475 GGGCTAAGACCCGAAGGCATTTGTGCAAGCTACCAAATCT
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGCTACCAAATCT
* *
99827515 GGGTTAAGACCCGAAGGCAATTGTG
1 GGGCTAAGACCCGAAGGCATTTGTG
99827540 TTTGTGGTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCAAGCTACCAAATCT
Found at i:99829278 original size:27 final size:27
Alignment explanation
Indices: 99829218--99829309 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
99829208 AGCAAGGCTT
* **
99829218 CCAGTAACAGTATCA--TAGCAAAGCTG
1 CCAGTAACAGTAT-ATGTGGCAAAGCCA
*
99829244 CCAATAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
99829271 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
99829298 CCAGTAACAGTA
1 CCAGTAACAGTA
99829310 CACTTCCTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
25 1 0.02
26 12 0.20
27 46 0.78
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:99832790 original size:39 final size:39
Alignment explanation
Indices: 99832514--99832787 Score: 440
Period size: 39 Copynumber: 7.0 Consensus size: 39
99832504 AATTATATTA
* *
99832514 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
99832553 CCAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
99832592 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
99832631 CCAGCACGAAGCCTACAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
99832670 CCAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
99832709 CCAGCACGAAGCTTGCGAGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
99832748 CTAGCACGAAGCTTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
99832787 C
1 C
99832788 TAGTGTCTTG
Statistics
Matches: 218, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 218 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:99839473 original size:28 final size:28
Alignment explanation
Indices: 99839428--99839496 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
99839418 TTTAAAACCC
*
99839428 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99839455 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99839483 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
99839497 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:99841346 original size:19 final size:18
Alignment explanation
Indices: 99841309--99841352 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
99841299 ATACATACAG
99841309 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
99841326 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
99841345 TACTAATT
1 TAATAATT
99841353 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:99843778 original size:28 final size:28
Alignment explanation
Indices: 99843732--99843827 Score: 169
Period size: 27 Copynumber: 3.5 Consensus size: 28
99843722 TTTAAAACCC
*
99843732 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99843759 TAGGGGTAATTTCGGTAATTTTGCT-TT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99843786 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99843814 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
99843828 TGATCTACGC
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
27 34 0.52
28 32 0.48
ACGTcount: A:0.19, C:0.09, G:0.27, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:99845663 original size:19 final size:18
Alignment explanation
Indices: 99845626--99845669 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
99845616 ATACATACAG
99845626 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
99845643 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
99845662 TACTAATT
1 TAATAATT
99845670 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:99848082 original size:27 final size:26
Alignment explanation
Indices: 99848052--99848132 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
99848042 TTTAAAACCC
99848052 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTAT-TCGGTAATTTTGCTCTT
*
99848079 TA--GG-----GGTAATTTCGCTCTT
1 TAGGGGTATTCGGTAATTTTGCTCTT
99848098 TAGGGGTAATTTCGGT-ATTTTGCTCTT
1 TAGGGGT-A-TTCGGTAATTTTGCTCTT
99848125 TAGGGGTA
1 TAGGGGTA
99848133 ATTTCGTGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 19
0.67 0.03 0.30
Matches are distributed among these distances:
19 16 0.37
21 2 0.05
25 2 0.05
26 1 0.02
27 19 0.44
28 3 0.07
ACGTcount: A:0.17, C:0.11, G:0.28, T:0.43
Consensus pattern (26 bp):
TAGGGGTATTCGGTAATTTTGCTCTT
Found at i:99848088 original size:19 final size:19
Alignment explanation
Indices: 99848064--99848111 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
99848054 GGGGTATATC
*
99848064 GGTAATTTTGCTCTTTAGG
1 GGTAATTTCGCTCTTTAGG
99848083 GGTAATTTCGCTCTTTAGG
1 GGTAATTTCGCTCTTTAGG
99848102 GGTAATTTCG
1 GGTAATTTCG
99848112 GTATTTTGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.17, C:0.12, G:0.27, T:0.44
Consensus pattern (19 bp):
GGTAATTTCGCTCTTTAGG
Found at i:99848133 original size:27 final size:27
Alignment explanation
Indices: 99848087--99848138 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
99848077 TTTAGGGGTA
99848087 ATTTCGCTCTTTAGGGGTAATTTCGGT
1 ATTTCGCTCTTTAGGGGTAATTTCGGT
*
99848114 ATTTTGCTCTTTAGGGGTAATTTCG
1 ATTTCGCTCTTTAGGGGTAATTTCG
99848139 TGATCTACGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.25, T:0.46
Consensus pattern (27 bp):
ATTTCGCTCTTTAGGGGTAATTTCGGT
Found at i:99849978 original size:19 final size:18
Alignment explanation
Indices: 99849941--99849984 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
99849931 ATACATACAG
99849941 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
99849958 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
99849977 TACTAATT
1 TAATAATT
99849985 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:99850267 original size:39 final size:39
Alignment explanation
Indices: 99850216--99850403 Score: 295
Period size: 39 Copynumber: 4.8 Consensus size: 39
99850206 TACCAGCATA
*
99850216 AAGCCTGTGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
99850255 AAGCCCGCGGGACTTTAACCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
99850294 AAGCCTGCAGGACTTTAACCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* **
99850333 AAGCCTGCGAGACTTTAGCTTGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
99850372 AAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTC
99850404 TAGTGTCTTG
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:99859877 original size:43 final size:42
Alignment explanation
Indices: 99859811--99859901 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 42
99859801 GAAACATCGA
* *
99859811 CATCGTATTTGATTTCGTGTAAGACC-CTGTCTAGGACAGTGG
1 CATCGTATTTGATTGCATGTAAGACCAC-GTCTAGGACAGTGG
* *
99859853 CATCGATATTTGATTGCATGTAAGACCACGTCTTGGACATTGG
1 CATCG-TATTTGATTGCATGTAAGACCACGTCTAGGACAGTGG
99859896 CATCGT
1 CATCGT
99859902 GCGAGCTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 6 0.14
43 36 0.84
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (42 bp):
CATCGTATTTGATTGCATGTAAGACCACGTCTAGGACAGTGG
Found at i:99861902 original size:49 final size:51
Alignment explanation
Indices: 99861759--99861894 Score: 186
Period size: 51 Copynumber: 2.7 Consensus size: 51
99861749 TCTATTGTGA
*
99861759 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAAAACTGT
* * * * * **
99861810 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTA-T-T
1 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAAAACTGT
99861859 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGC
1 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGC
99861895 ATTCCAGATA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 32 0.44
50 1 0.01
51 39 0.54
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAAAACTGT
Found at i:99863618 original size:14 final size:13
Alignment explanation
Indices: 99863590--99863627 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
99863580 TTTGATATAA
*
99863590 AATTTGTATTTTG
1 AATTGGTATTTTG
99863603 AATTGGTATGTTTG
1 AATTGGTAT-TTTG
99863617 AATTGG-ATTTT
1 AATTGGTATTTT
99863628 TATATGGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 3 0.13
13 10 0.43
14 10 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (13 bp):
AATTGGTATTTTG
Found at i:99864922 original size:15 final size:16
Alignment explanation
Indices: 99864897--99864974 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 16
99864887 CTTTTCTCAT
99864897 TTTCTTTTCTTTTTCC
1 TTTCTTTTCTTTTTCC
99864913 TTTC-TTTCTTTTT-C
1 TTTCTTTTCTTTTTCC
* **
99864927 TTCTCTGTTTCAATTTAAC
1 TT-TCT-TTTC-TTTTTCC
*
99864946 TTT-GTTTCTTTTTCC
1 TTTCTTTTCTTTTTCC
*
99864961 ATTCTTTCTCTTTT
1 TTTCTTT-TCTTTT
99864975 ATTTGTTTTG
Statistics
Matches: 47, Mismatches: 8, Indels: 13
0.69 0.12 0.19
Matches are distributed among these distances:
14 3 0.06
15 17 0.36
16 10 0.21
17 10 0.21
18 4 0.09
19 3 0.06
ACGTcount: A:0.06, C:0.22, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTCTTTTCTTTTTCC
Found at i:99865020 original size:5 final size:5
Alignment explanation
Indices: 99865010--99865035 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
99865000 ATTATTATAA
99865010 AATAT AATAT AATAT AATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT A
99865036 TATTCTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:99870903 original size:12 final size:12
Alignment explanation
Indices: 99870886--99870917 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
99870876 GGTGTTACAC
99870886 AAACCGTGTGCT
1 AAACCGTGTGCT
99870898 AAACCGTGTGCT
1 AAACCGTGTGCT
99870910 AAACCGTG
1 AAACCGTG
99870918 CTAATCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (12 bp):
AAACCGTGTGCT
Found at i:99872433 original size:29 final size:30
Alignment explanation
Indices: 99872372--99872446 Score: 127
Period size: 30 Copynumber: 2.5 Consensus size: 30
99872362 ATTAGGGTTA
99872372 TTTTACACATTT--TCCCTAAACTTTCACAT
1 TTTTACA-ATTTAGTCCCTAAACTTTCACAT
99872401 TTTTACAATTTAGTCCCTAAACTTTCACAT
1 TTTTACAATTTAGTCCCTAAACTTTCACAT
99872431 TTTTACAATTTAGTCC
1 TTTTACAATTTAGTCC
99872447 TTATTTCATA
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
28 4 0.09
29 7 0.16
30 33 0.75
ACGTcount: A:0.28, C:0.24, G:0.03, T:0.45
Consensus pattern (30 bp):
TTTTACAATTTAGTCCCTAAACTTTCACAT
Found at i:99886893 original size:16 final size:16
Alignment explanation
Indices: 99886872--99886905 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
99886862 GAAGATAATT
99886872 TCAATGACTCCCCATA
1 TCAATGACTCCCCATA
99886888 TCAATGACTCCCCATA
1 TCAATGACTCCCCATA
99886904 TC
1 TC
99886906 CCTCAAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.38, G:0.06, T:0.26
Consensus pattern (16 bp):
TCAATGACTCCCCATA
Found at i:99891267 original size:26 final size:26
Alignment explanation
Indices: 99891238--99891346 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
99891228 TGGTACAAAT
*
99891238 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
99891264 TGATAAT-GGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
99891289 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
99891315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
99891341 TGATAA
1 TGATAA
99891347 GAATTTAATG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.29
26 55 0.71
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:99891294 original size:51 final size:52
Alignment explanation
Indices: 99891238--99891346 Score: 193
Period size: 51 Copynumber: 2.1 Consensus size: 52
99891228 TGGTACAAAT
99891238 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
* *
99891289 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
99891341 TGATAA
1 TGATAA
99891347 GAATTTAATG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 32 0.58
52 23 0.42
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
Found at i:99892998 original size:27 final size:27
Alignment explanation
Indices: 99892957--99893068 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
99892947 GAGGAAGCGT
*
99892957 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
99892984 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
99893011 TCTGGTGG-TCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
99893038 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
99893064 TCTGG
1 TCTGG
99893069 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 19 0.26
27 47 0.64
28 7 0.10
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:99893061 original size:53 final size:54
Alignment explanation
Indices: 99892955--99893068 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
99892945 TGGAGGAAGC
*
99892955 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
99893009 GTTCTGGTGG-TCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
99893062 GTTCTGG
1 GTTCTGG
99893069 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 26 0.48
54 28 0.52
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:99893154 original size:19 final size:22
Alignment explanation
Indices: 99893130--99893169 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
99893120 CTCCCCACAC
99893130 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
99893149 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
99893170 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:99896166 original size:26 final size:25
Alignment explanation
Indices: 99896137--99896243 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 25
99896127 TGGTACAAAT
*
99896137 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
99896163 TGATAATGGTTAGGTAAATG-TTCA
1 TGATAATGGTTAGGTAAATGTTTCA
99896187 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
99896212 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
99896238 TGATAA
1 TGATAA
99896244 GAATTTCATG
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
24 23 0.29
25 24 0.31
26 31 0.40
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:99897880 original size:27 final size:27
Alignment explanation
Indices: 99897839--99897976 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 27
99897829 GAGGAAGCGT
*
99897839 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
99897866 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
99897893 TCTGGTGG-TCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
99897919 TATGGTGG-TCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
99897946 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
99897972 TCTGG
1 TCTGG
99897977 CAGCCATGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 42 0.43
27 48 0.49
28 7 0.07
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:99897925 original size:53 final size:53
Alignment explanation
Indices: 99897839--99897972 Score: 155
Period size: 53 Copynumber: 2.5 Consensus size: 53
99897829 GAGGAAGCGT
* * * *
99897839 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGG-TCTGCCACATATATCTGTTATGGTGG-TCTGCCACAAATATCTGTA
* *
99897893 TCTGGTGGTCTGCCACATATATCTGTTATGGTGGTCTGCCACGATTATCTGTA
1 TCTGGTGGTCTGCCACATATATCTGTTATGGTGGTCTGCCACAAATATCTGTA
* *
99897946 TCTGGTGACTCTGTCACAT-TATCTGTT
1 TCTGGTG-GTCTGCCACATATATCTGTT
99897973 CTGGCAGCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 15 0.21
53 38 0.54
54 17 0.24
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (53 bp):
TCTGGTGGTCTGCCACATATATCTGTTATGGTGGTCTGCCACAAATATCTGTA
Found at i:99901713 original size:49 final size:49
Alignment explanation
Indices: 99901640--99901769 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
99901630 GTACATCAAA
*
99901640 GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCG-GT
* * * * * *
99901689 G-CTGATGTCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGT
1 GTC-GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGGT
99901738 GTCGATGCCATGTCCCAGATAGGTCTTACACT
1 GTCGATGCCATGTCCCAGATAGGTCTTACACT
99901770 AACACATAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 2 0.03
49 65 0.96
50 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGGT
Found at i:99901987 original size:46 final size:46
Alignment explanation
Indices: 99901881--99902000 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 46
99901871 CTCAATACTA
*
99901881 ATGCATGTTCCAGACATGT-TTACACTGACTGGTATATGTCGAGGCCG
1 ATGCATGTTCCAGACATGTCTTACACTGACTGCTATATGT--AGGCCG
* *
99901928 ATGCATGTCCCAGACATGTCTTACACTGGCT-CTCAATATGT-GGCCG
1 ATGCATGTTCCAGACATGTCTTACACTGACTGCT--ATATGTAGGCCG
99901974 ATGCATGTTCCAGACATGTCTTACACT
1 ATGCATGTTCCAGACATGTCTTACACT
99902001 AGCACACATA
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
46 31 0.47
47 19 0.29
48 10 0.15
49 6 0.09
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (46 bp):
ATGCATGTTCCAGACATGTCTTACACTGACTGCTATATGTAGGCCG
Found at i:99905797 original size:49 final size:49
Alignment explanation
Indices: 99905741--99905986 Score: 294
Period size: 49 Copynumber: 5.0 Consensus size: 49
99905731 GTAGACAAGG
** * *
99905741 TTATCCGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* *
99905790 TTATCCGGTACACGTAGTAGACTACACTTAGTACTACACACGTGACCTAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
** * * *
99905840 CCATCCGATACACGTAGTAGCCTGCACTTAGTACTATACACGTGATCGAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
** * * * * *
99905890 GTTATTGGGTACGCATAGTAGCCTACACTTAGTACTACACATGTGATCAA
1 -TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
99905940 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACC
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
99905987 TCAAAATAGA
Statistics
Matches: 161, Mismatches: 33, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
49 80 0.50
50 45 0.28
51 36 0.22
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:99905977 original size:100 final size:99
Alignment explanation
Indices: 99905741--99905986 Score: 323
Period size: 100 Copynumber: 2.5 Consensus size: 99
99905731 GTAGACAAGG
** * * * *
99905741 TTATCCGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACATA
99905806 GTAGACTACACTTAGTACTACACACGTGACCTAA
66 GTAGACTACACTTAGTACTACACACGTGACCTAA
** * * ** *
99905840 CCATCCGATACACGTAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTATTGGGTACGCA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGA-CCAA-TTATCCGGTACACA
* * *
99905905 TAGTAGCCTACACTTAGTACTACACATGTGATC-AA
64 TAGTAGACTACACTTAGTACTACACACGTGACCTAA
99905940 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACC
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACC
99905987 TCAAAATAGA
Statistics
Matches: 125, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 38 0.30
100 47 0.38
101 40 0.32
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACATA
GTAGACTACACTTAGTACTACACACGTGACCTAA
Found at i:99906263 original size:27 final size:27
Alignment explanation
Indices: 99906233--99906286 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
99906223 TCATACAACC
* *
99906233 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
99906260 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
99906287 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:99906623 original size:30 final size:29
Alignment explanation
Indices: 99906589--99906668 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 29
99906579 CATATTTTGG
99906589 AAAATTATAATTTTTCCCCTAAACTTTGTC
1 AAAATTA-AATTTTTCCCCTAAACTTTGTC
*
99906619 AAAATTACAATTTTGCCCCTAAACTTTGTC
1 AAAATTA-AATTTTTCCCCTAAACTTTGTC
*
99906649 AAAATTACATTTTTCCCCTA
1 AAAATTAAATTTTTCCCCTA
99906669 GGCTCGTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 11 0.24
30 35 0.76
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAATTAAATTTTTCCCCTAAACTTTGTC
Found at i:99908313 original size:17 final size:17
Alignment explanation
Indices: 99908291--99908324 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
99908281 ATACGTTGGT
99908291 TAGTTTTTCTCATGTGG
1 TAGTTTTTCTCATGTGG
99908308 TAGTTTTTCTCATGTGG
1 TAGTTTTTCTCATGTGG
99908325 CTTCAACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.53
Consensus pattern (17 bp):
TAGTTTTTCTCATGTGG
Found at i:99925302 original size:13 final size:13
Alignment explanation
Indices: 99925277--99925329 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
99925267 GCTCAGCAGG
*
99925277 GACATGCCCGTGT
1 GACACGCCCGTGT
*
99925290 GACACGCCTGTGT
1 GACACGCCCGTGT
99925303 GACACGCCCGTGT
1 GACACGCCCGTGT
*
99925316 AACACGCCCGTGT
1 GACACGCCCGTGT
99925329 G
1 G
99925330 CGATTACTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:99929987 original size:40 final size:40
Alignment explanation
Indices: 99929936--99930028 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
99929926 AGTAGTGCCT
* ** *
99929936 TGTTTGTACTTCGATAC-CTCTGAATGTACATCTGTGCCCC
1 TGTTTGCACTTCGATACAC-CTGAATACACATCTATGCCCC
* *
99929976 TGTTTGCACTTCGGTGCACCTGAATACACATCTATGCCCC
1 TGTTTGCACTTCGATACACCTGAATACACATCTATGCCCC
*
99930016 TGATTGCACTTCG
1 TGTTTGCACTTCG
99930029 GTGCCCCTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.34
Consensus pattern (40 bp):
TGTTTGCACTTCGATACACCTGAATACACATCTATGCCCC
Found at i:99929997 original size:20 final size:20
Alignment explanation
Indices: 99929969--99930077 Score: 112
Period size: 20 Copynumber: 5.5 Consensus size: 20
99929959 ATGTACATCT
*
99929969 GTGCCCCTGTTTGCACTTCG
1 GTGCCCCTGATTGCACTTCG
* * * * *
99929989 GTGCACCTGAATACACATCT
1 GTGCCCCTGATTGCACTTCG
*
99930009 ATGCCCCTGATTGCACTTCG
1 GTGCCCCTGATTGCACTTCG
* *
99930029 GTGCCCCTAATCGCACATTC-
1 GTGCCCCTGATTGCAC-TTCG
*
99930049 GTGCTCCTGATTGCACTTCG
1 GTGCCCCTGATTGCACTTCG
99930069 GTGCCCCTG
1 GTGCCCCTG
99930078 TTATGCATCT
Statistics
Matches: 68, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
19 3 0.04
20 62 0.91
21 3 0.04
ACGTcount: A:0.15, C:0.35, G:0.21, T:0.29
Consensus pattern (20 bp):
GTGCCCCTGATTGCACTTCG
Found at i:99930029 original size:40 final size:41
Alignment explanation
Indices: 99929963--99930077 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 41
99929953 CTCTGAATGT
* *
99929963 ACATCTGTGCCCCTGTTTGCACTTCGGTGCACCTGAAT-AC
1 ACATCTGTGCCCCTGATTGCACTTCGGTGCCCCTGAATCAC
* *
99930003 ACATCTATGCCCCTGATTGCACTTCGGTGCCCCT-AATCGC
1 ACATCTGTGCCCCTGATTGCACTTCGGTGCCCCTGAATCAC
*
99930043 ACAT-TCGTGCTCCTGATTGCACTTCGGTGCCCCTG
1 ACATCT-GTGCCCCTGATTGCACTTCGGTGCCCCTG
99930078 TTATGCATCT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.06
40 62 0.94
ACGTcount: A:0.16, C:0.35, G:0.20, T:0.30
Consensus pattern (41 bp):
ACATCTGTGCCCCTGATTGCACTTCGGTGCCCCTGAATCAC
Found at i:99937123 original size:3 final size:3
Alignment explanation
Indices: 99937117--99937185 Score: 65
Period size: 3 Copynumber: 24.0 Consensus size: 3
99937107 ATCTAAGAGT
* ** *
99937117 TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA -AA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
99937160 TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
99937186 AGTTAAAGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
2 7 0.13
3 44 0.81
4 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:99937162 original size:34 final size:34
Alignment explanation
Indices: 99937119--99937186 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
99937109 CTAAGAGTTT
*
99937119 ATTATTATTAATTATTAGTATGGTT-TTATATTAA
1 ATTATTATT-ATTATTAGTATGATTATTATATTAA
* *
99937153 ATTATTATTATTATTATTATTATTATTATATTAA
1 ATTATTATTATTATTAGTATGATTATTATATTAA
99937187 GTTAAAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 12 0.40
34 18 0.60
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (34 bp):
ATTATTATTATTATTAGTATGATTATTATATTAA
Found at i:99937550 original size:22 final size:21
Alignment explanation
Indices: 99937518--99937558 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
99937508 TTAATTAAGT
99937518 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
99937539 AAATAAAAAGAAACAAAGAA
1 AAAT-AAAAGAAACAAAGAA
99937559 AAGAAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:99939711 original size:76 final size:76
Alignment explanation
Indices: 99939582--99939734 Score: 261
Period size: 76 Copynumber: 2.0 Consensus size: 76
99939572 AGCTATCAGG
* * *
99939582 TTTAGTCGATTCTCGGGCTAAATCAAGCTCGGAAGTGAGTCTAATAGTACATGCCACTTTTGAGT
1 TTTAGCCGATTCCCAGGCTAAATCAAGCTCGGAAGTGAGTCTAATAGTACATGCCACTTTTGAGT
99939647 CAAAATTGAGT
66 CAAAATTGAGT
* *
99939658 TTTAGCCGATTCCCAGGCTAAATCGAGCTCGGAAGTGAGTCTAATAGTTCATGCCACTTTTGAGT
1 TTTAGCCGATTCCCAGGCTAAATCAAGCTCGGAAGTGAGTCTAATAGTACATGCCACTTTTGAGT
99939723 CAAAATTGAGT
66 CAAAATTGAGT
99939734 T
1 T
99939735 GGGATTTTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (76 bp):
TTTAGCCGATTCCCAGGCTAAATCAAGCTCGGAAGTGAGTCTAATAGTACATGCCACTTTTGAGT
CAAAATTGAGT
Found at i:99944715 original size:3 final size:3
Alignment explanation
Indices: 99944709--99944776 Score: 56
Period size: 3 Copynumber: 24.0 Consensus size: 3
99944699 ATCTAAGATT
* ** *
99944709 TTA TTA TTA TTAA TTA TTA GTA TGG TT- TT- TTA TTA -AA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
99944752 TTA TTA TTA TTA TTA TT- TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
99944777 AGTTAAAGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
2 9 0.17
3 41 0.77
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:99944776 original size:33 final size:34
Alignment explanation
Indices: 99944711--99944777 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
99944701 CTAAGATTTT
* *
99944711 ATTATTATTAATTATTAGTATGGTTTTTTATTAA
1 ATTATTATTAATTATTAGTATGATTTTATATTAA
* *
99944745 ATTATTATT-ATTATTATTATTATTTTATATTAA
1 ATTATTATTAATTATTAGTATGATTTTATATTAA
99944778 GTTAAAGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 20 0.69
34 9 0.31
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (34 bp):
ATTATTATTAATTATTAGTATGATTTTATATTAA
Found at i:99947275 original size:67 final size:66
Alignment explanation
Indices: 99947157--99947441 Score: 256
Period size: 67 Copynumber: 4.3 Consensus size: 66
99947147 TGTAATGGGG
* ** * * ****
99947157 TAATGTGTAGGACCATAGCTCAACTATGGCAATATAAAGAGTTTGTTAGAACATTAAACATGAGG
1 TAATGTGTAAGACCATAGCT-TGCTATGACAACATAAAGAGTCCACTAGAACATTAAACATGAGG
99947222 TT
65 TT
* *
99947224 TAATTTGTAAGACCATAGCTATGCTATGACAACATAAAGAGTCCACTAGAACATCAAACATG-GG
1 TAATGTGTAAGACCATAGCT-TGCTATGACAACATAAAGAGTCCACTAGAACATTAAACATGAGG
99947288 TT
65 TT
* *
99947290 ATAATGTGTAAGACCATAGCTTGGCTAT-AGCAACATAAAGAGTCCACTA-AGACATTAAATATA
1 -TAATGTGTAAGACCATAGCTT-GCTATGA-CAACATAAAGAGTCCACTAGA-ACATTAAACATG
*
99947353 AGGTA
62 AGGTT
* * * * * *
99947358 TAATGTGAAAGACCATAGCTCGACTATGACAACATAGAGAGTCCTCCAGGAA-ATTAAACATGGG
1 TAATGTGTAAGACCATAGCTTG-CTATGACAACATAAAGAGTCCACTA-GAACATTAAACATGAG
*
99947422 GTA
64 GTT
*
99947425 TGATGTGTGAA-ACCATA
1 TAATGTGT-AAGACCATA
99947442 ACTTAGTGAT
Statistics
Matches: 181, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
66 8 0.04
67 165 0.91
68 7 0.04
69 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (66 bp):
TAATGTGTAAGACCATAGCTTGCTATGACAACATAAAGAGTCCACTAGAACATTAAACATGAGGT
T
Found at i:99947466 original size:134 final size:134
Alignment explanation
Indices: 99947207--99947469 Score: 309
Period size: 134 Copynumber: 2.0 Consensus size: 134
99947197 GTTTGTTAGA
* * * * * *
99947207 ACATTAAACATGAGGTTTAATTTGTAAGACCATAGCTATGCTATGACAACATAAAGAGTCCACTA
1 ACATTAAACATAAGGTATAATGTGAAAGACCATAGCTACGCTATGACAACATAAAGAGTCCACCA
* * *
99947272 GAACATCAAACATGGGTTATAATGTGTAAGACCATAGCTTGGCTATAGCAACATAAAGAGTCCAC
66 GAACATCAAACATGGGGTATAATGTGTAAGACCATAACTTAGCTATAGCAACATAAAGAGTCCAC
99947337 TAAG
131 TAAG
* * *
99947341 ACATTAAATATAAGGTATAATGTGAAAGACCATAGCT-CGACTATGACAACATAGAGAGTCCTCC
1 ACATTAAACATAAGGTATAATGTGAAAGACCATAGCTACG-CTATGACAACATAAAGAGTCCACC
* * * * *
99947405 AGGAA-ATTAAACATGGGGTATGATGTGTGAA-ACCATAACTTAG-TGATGGCAGCATATAGAGT
65 A-GAACATCAAACATGGGGTATAATGTGT-AAGACCATAACTTAGCT-ATAGCAACATAAAGAGT
99947467 CCA
127 CCA
99947470 TCGGGACAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
133 2 0.02
134 101 0.94
135 5 0.05
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (134 bp):
ACATTAAACATAAGGTATAATGTGAAAGACCATAGCTACGCTATGACAACATAAAGAGTCCACCA
GAACATCAAACATGGGGTATAATGTGTAAGACCATAACTTAGCTATAGCAACATAAAGAGTCCAC
TAAG
Found at i:99950805 original size:186 final size:185
Alignment explanation
Indices: 99950433--99950793 Score: 605
Period size: 186 Copynumber: 1.9 Consensus size: 185
99950423 TGGCGGTAAA
* *
99950433 TACACCAGAAATTATTACACCAAGATTTTCTTTAAACTCGAAAAATTAGGAACATTAAGGGTTAA
1 TACACCAGAAATTATGACACCAAGATTTCCTTTAAACTCGAAAAATTAGGAACATTAAGGGTTAA
* *
99950498 ATTAAAAAAGACCGTAGTTGATGGTCTTTATTGGAAAAAATAGGAAAAGTTAGAAACAATATTGG
66 ATTAAAAAAGACCGTAGCTGATGGTCTCTATTGGAAAAAATAGGAAAAGTTAGAAACAATATTGG
99950563 ACAATGTTGAAATCCAATTTTGGTTCAGTTGAATTAGAACCAGCCTATACTTTTG
131 ACAATGTTGAAATCCAATTTTGGTTCAGTTGAATTAGAACCAGCCTATACTTTTG
* * *
99950618 TACACCAGAAATTATGATACCAGGATTTCCTTTAAACTCGAAAAATTAGGAACATTAGGGGTTAA
1 TACACCAGAAATTATGACACCAAGATTTCCTTTAAACTCGAAAAATTAGGAACATTAAGGGTTAA
*
99950683 ATTAAAAAAGACCGTAAGCTGATGGTCTCTATTGGAAAAAATTGGAAAAGTTAGAAACAATATTG
66 ATTAAAAAAGACCGT-AGCTGATGGTCTCTATTGGAAAAAATAGGAAAAGTTAGAAACAATATTG
* ** *
99950748 GACATTGTTGAAATCCAATTTTGGTTTGGTTGGATTAGAACCAGCC
130 GACAATGTTGAAATCCAATTTTGGTTCAGTTGAATTAGAACCAGCC
99950794 AGTCCTTTTG
Statistics
Matches: 163, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
185 75 0.46
186 88 0.54
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (185 bp):
TACACCAGAAATTATGACACCAAGATTTCCTTTAAACTCGAAAAATTAGGAACATTAAGGGTTAA
ATTAAAAAAGACCGTAGCTGATGGTCTCTATTGGAAAAAATAGGAAAAGTTAGAAACAATATTGG
ACAATGTTGAAATCCAATTTTGGTTCAGTTGAATTAGAACCAGCCTATACTTTTG
Found at i:99956486 original size:34 final size:33
Alignment explanation
Indices: 99956430--99956537 Score: 155
Period size: 34 Copynumber: 3.2 Consensus size: 33
99956420 AGTGACAGTC
* *
99956430 TAGTATTAGTGTGGCCTTAGCCCATTGCAGTAA
1 TAGTATCAGTGTGGCCTTAGCCCATTACAGTAA
*
99956463 TAGTATCGGTGTGAGCCTTAGCCCATTACAGTAA
1 TAGTATCAGTGTG-GCCTTAGCCCATTACAGTAA
*
99956497 TAGTATCAGTGTGGGCCTTAG-CCATTACGGTAA
1 TAGTATCAGTGT-GGCCTTAGCCCATTACAGTAA
99956530 TAGTATCA
1 TAGTATCA
99956538 TAAATGTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
33 30 0.44
34 37 0.54
35 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (33 bp):
TAGTATCAGTGTGGCCTTAGCCCATTACAGTAA
Found at i:99968712 original size:14 final size:13
Alignment explanation
Indices: 99968689--99968728 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
99968679 TTTGTTTTAC
99968689 TGAAAATAATTTT
1 TGAAAATAATTTT
*
99968702 TAGAAATTAATTTT
1 T-GAAAATAATTTT
99968716 TGAAAAATAATTT
1 TG-AAAATAATTT
99968729 ATTTTTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 2 0.09
14 21 0.91
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TGAAAATAATTTT
Found at i:99969223 original size:19 final size:19
Alignment explanation
Indices: 99969199--99969235 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
99969189 TATTATTAAT
*
99969199 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
99969218 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
99969236 TTAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:99972386 original size:27 final size:27
Alignment explanation
Indices: 99972348--99972405 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
99972338 AAGTAACCCA
*
99972348 CTCTAAAATTTTCTAATCTCTTTACTT
1 CTCTAAAATTTTCTAATCTCATTACTT
99972375 CTCTAAAATTTTCTAATCTCATTACTT
1 CTCTAAAATTTTCTAATCTCATTACTT
99972402 CTCT
1 CTCT
99972406 TTTCTACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (27 bp):
CTCTAAAATTTTCTAATCTCATTACTT
Found at i:99976713 original size:26 final size:28
Alignment explanation
Indices: 99976679--99976735 Score: 100
Period size: 27 Copynumber: 2.1 Consensus size: 28
99976669 AACTGAATCA
99976679 TAAAGAAGGTAAAG-AAAAAGAACTGTT
1 TAAAGAAGGTAAAGAAAAAAGAACTGTT
99976706 TAAA-AAGGTAAAGAAAAAAGAACTGTT
1 TAAAGAAGGTAAAGAAAAAAGAACTGTT
99976733 TAA
1 TAA
99976736 CTTTTTGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.58, C:0.04, G:0.19, T:0.19
Consensus pattern (28 bp):
TAAAGAAGGTAAAGAAAAAAGAACTGTT
Found at i:99987213 original size:33 final size:32
Alignment explanation
Indices: 99987172--99987233 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
99987162 TTTATGTATA
*
99987172 AATGTAAGACCATAGCT-AGGTTATGGCATCCT
1 AATGTAAGACCATAACTGA-GTTATGGCATCCT
99987204 AATGATAAGACCATAACTGAGTTATGGCAT
1 AATG-TAAGACCATAACTGAGTTATGGCAT
99987234 TACGAGTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 4 0.15
33 22 0.81
34 1 0.04
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (32 bp):
AATGTAAGACCATAACTGAGTTATGGCATCCT
Found at i:99987214 original size:105 final size:105
Alignment explanation
Indices: 99987065--99987253 Score: 247
Period size: 105 Copynumber: 1.8 Consensus size: 105
99987055 GACAAAGTGT
* * * * *
99987065 TAAATGTAAGACCATAGCTGGGCTATGGTATTTCAGTGAAAAGACCTTAACT-AGGTTATGGCAT
1 TAAATGTAAGACCATAGCTAGGCTATGGCATCTCAATGAAAAGACCATAACTGA-GTTATGGCAT
**
99987129 CGTGAATGTAAGACCATGGTTGAACCATGTCAGTTTATGTA
65 CACGAATGTAAGACCATGGTTGAACCATGTCAGTTTATGTA
* *
99987170 TAAATGTAAGACCATAGCTAGGTTATGGCATC-CTAATGATAAGACCATAACTGAGTTATGGCAT
1 TAAATGTAAGACCATAGCTAGGCTATGGCATCTC-AATGAAAAGACCATAACTGAGTTATGGCAT
* *
99987234 TACGAGTGTAAGACCATGGT
65 CACGAATGTAAGACCATGGT
99987254 AGGGGCATGG
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
104 1 0.01
105 69 0.97
106 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (105 bp):
TAAATGTAAGACCATAGCTAGGCTATGGCATCTCAATGAAAAGACCATAACTGAGTTATGGCATC
ACGAATGTAAGACCATGGTTGAACCATGTCAGTTTATGTA
Found at i:99987246 original size:33 final size:32
Alignment explanation
Indices: 99987172--99987250 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
99987162 TTTATGTATA
* * *
99987172 AATGTAAGACCATAGCTAGGTTATGGCATCCT
1 AATGTAAGACCATAACTAGGTTATGGCATACG
99987204 AATGATAAGACCATAACT-GAGTTATGGCATTACG
1 AATG-TAAGACCATAACTAG-GTTATGGCA-TACG
*
99987238 AGTGTAAGACCAT
1 AATGTAAGACCAT
99987251 GGTAGGGGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 5 0.12
33 30 0.75
34 5 0.12
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (32 bp):
AATGTAAGACCATAACTAGGTTATGGCATACG
Found at i:99989053 original size:214 final size:215
Alignment explanation
Indices: 99988683--99989112 Score: 826
Period size: 214 Copynumber: 2.0 Consensus size: 215
99988673 AGATGTCTAA
99988683 TAGATCCGAACATGCTGAACGTGATGAAGCTAATAGTAGAATACAAACATTTGTGCACAGGACAA
1 TAGATCCGAACATGCTGAACGTGATGAAGCTAATAGTAGAATACAAACATTTGTGCACAGGACAA
*
99988748 GTAGTAGTGTCCCAATTTTTCCGATACAAGAACATGAACTTAGAAATATGTTTTATGGGTTTATG
66 GTAGTAGTGTCCCAATTTCTCCGATACAAGAACATGAACTTAGAAATATGTTTTATGGGTTTATG
99988813 AACAAATAGTTTAATGAGATGATGCAAGAAAGAAATCAGGCTCAGCAACCTTCTCCCCCTACTGC
131 AACAAATAGTTTAATGAGATGATGCAAGAAAGAAATCAGGCTCAGCAACCTTCTCCCCCTACTGC
*
99988878 ACCATCTGTAGCACCCTCAG
196 ACCATCTATAGCACCCTCAG
99988898 TAGATCCGAACATGCTGAACGTGATGAAGCTAATAGTAGAATACAAACATTTGTGCACAGGACAA
1 TAGATCCGAACATGCTGAACGTGATGAAGCTAATAGTAGAATACAAACATTTGTGCACAGGACAA
99988963 GTAGTAGTGT-CCAATTTCTCCGATACAAGAACATGAACTTAGAAATATGTTTTATGGGTTTATG
66 GTAGTAGTGTCCCAATTTCTCCGATACAAGAACATGAACTTAGAAATATGTTTTATGGGTTTATG
*
99989027 AACAAATGGTTTAATGAGATGATGCAAGAAAGAAATCAGGCTCAGCAACCTTCTCCCCCTACTGC
131 AACAAATAGTTTAATGAGATGATGCAAGAAAGAAATCAGGCTCAGCAACCTTCTCCCCCTACTGC
99989092 ACCATCTATAGCACCCTCAG
196 ACCATCTATAGCACCCTCAG
99989112 T
1 T
99989113 TGCTCCTCCA
Statistics
Matches: 212, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
214 137 0.65
215 75 0.35
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (215 bp):
TAGATCCGAACATGCTGAACGTGATGAAGCTAATAGTAGAATACAAACATTTGTGCACAGGACAA
GTAGTAGTGTCCCAATTTCTCCGATACAAGAACATGAACTTAGAAATATGTTTTATGGGTTTATG
AACAAATAGTTTAATGAGATGATGCAAGAAAGAAATCAGGCTCAGCAACCTTCTCCCCCTACTGC
ACCATCTATAGCACCCTCAG
Found at i:99992804 original size:41 final size:41
Alignment explanation
Indices: 99992746--99992828 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
99992736 GTTACTAAAC
99992746 TAAATTTCAGCACAGTATTTTATCCTTAGATTAACGGGCAA
1 TAAATTTCAGCACAGTATTTTATCCTTAGATTAACGGGCAA
* *
99992787 TAAATTTCAGCATAGTATTTTATCCTTAGATTGACGGGCAA
1 TAAATTTCAGCACAGTATTTTATCCTTAGATTAACGGGCAA
99992828 T
1 T
99992829 CAGAACGAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (41 bp):
TAAATTTCAGCACAGTATTTTATCCTTAGATTAACGGGCAA
Found at i:99995008 original size:45 final size:45
Alignment explanation
Indices: 99994954--99995062 Score: 175
Period size: 45 Copynumber: 2.4 Consensus size: 45
99994944 CGATGCCATG
* *
99994954 CCCAGACATGGTCTTACACTGACATATCTCATAGTCGATGCAAGT
1 CCCAGACATGGTCTTACACTGACACATCTCATAGCCGATGCAAGT
* *
99994999 CCTAGACATGGTCTTACACTGACACATCTCATAGCCGATGCATGT
1 CCCAGACATGGTCTTACACTGACACATCTCATAGCCGATGCAAGT
99995044 CCCAGACAT-GTCTTACACT
1 CCCAGACATGGTCTTACACT
99995063 AGCTTACGTC
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
44 10 0.17
45 49 0.83
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (45 bp):
CCCAGACATGGTCTTACACTGACACATCTCATAGCCGATGCAAGT
Found at i:99995094 original size:46 final size:47
Alignment explanation
Indices: 99994942--99995156 Score: 155
Period size: 45 Copynumber: 4.7 Consensus size: 47
99994932 GTATATCTGT
* * *
99994942 GCCGATGCCATG-CCCAGACATGGTCTTACACTGACA-T-ATCTCATA-
1 GCCGATACCATGTCCCAGACAT-GTCTTACACTAACACTCGTCTCA-AG
* * * * * *
99994987 GTCGAT-GCAAGTCCTAGACATGGTCTTACACTGACA--CATCTCATA-
1 GCCGATACCATGTCCCAGACAT-GTCTTACACTAACACTCGTCTCA-AG
* * * *
99995032 GCCGAT-GCATGTCCCAGACATGTCTTACACTAGC-TTACGTCTCGAG
1 GCCGATACCATGTCCCAGACATGTCTTACACTAACACT-CGTCTCAAG
* * *
99995078 GCTGATA-CATGTCCCAGACGTGTCTTACACTAACACTCGTCTCAAT
1 GCCGATACCATGTCCCAGACATGTCTTACACTAACACTCGTCTCAAG
99995124 GCCGATACCATGTCCCAGACATTGTCTTACACT
1 GCCGATACCATGTCCCAGACA-TGTCTTACACT
99995157 GGCTCTCATA
Statistics
Matches: 141, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
44 14 0.10
45 55 0.39
46 48 0.34
47 13 0.09
48 11 0.08
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATACCATGTCCCAGACATGTCTTACACTAACACTCGTCTCAAG
Found at i:99996986 original size:105 final size:102
Alignment explanation
Indices: 99996805--99997000 Score: 241
Period size: 105 Copynumber: 1.9 Consensus size: 102
99996795 ATTTGACGGA
* * * * *
99996805 TAAGACCATGGTTGGACCATGACAAATTGTTAAATGTAAGACCATAGCTGGGCTATGGCATTTCA
1 TAAGACCATGGTTGAACCACGACAAATTGTTAAATGTAAGACCATAGCTAGGCTATGGAATCTCA
*
99996870 GTGAAAAGACCATAACTAGGTTATGGCATCGTGAACG
66 ATGAAAAGACCATAACTAGGTTATGGCATCGTGAACG
* * * *
99996907 TAAGACCATGGTTGAACCACGTCAGTATATGTATAAGTGTAAGACCATAGCTAGGTTATGGAATC
1 TAAGACCATGGTTGAACCACGACA-AAT-TGT-TAAATGTAAGACCATAGCTAGGCTATGGAATC
* *
99996972 -CTAATGATAAGACCATAACTGGGTTATGG
63 TC-AATGAAAAGACCATAACTAGGTTATGG
99997001 AATTACGAGT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
102 21 0.27
103 2 0.03
104 4 0.05
105 51 0.65
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (102 bp):
TAAGACCATGGTTGAACCACGACAAATTGTTAAATGTAAGACCATAGCTAGGCTATGGAATCTCA
ATGAAAAGACCATAACTAGGTTATGGCATCGTGAACG
Found at i:99997015 original size:105 final size:102
Alignment explanation
Indices: 99996805--99997023 Score: 233
Period size: 105 Copynumber: 2.1 Consensus size: 102
99996795 ATTTGACGGA
* * * * *
99996805 TAAGACCATGGTTGGACCATGACAAATTGTTAAATGTAAGACCATAGCTGGGCTATGGCATTTCA
1 TAAGACCATGGTTGAACCACGACAAATTGTTAAATGTAAGACCATAGCTAGGCTATGGAATCTCA
* * **
99996870 GTGAAAAGACCATAACTAGGTTATGGCATCGTGAACG
66 ATGAAAAGACCATAACTAGGTTATGGAATCACGAACG
* * * *
99996907 TAAGACCATGGTTGAACCACGTCAGTATATGTATAAGTGTAAGACCATAGCTAGGTTATGGAATC
1 TAAGACCATGGTTGAACCACGACA-AAT-TGT-TAAATGTAAGACCATAGCTAGGCTATGGAATC
* * * **
99996972 -CTAATGATAAGACCATAACTGGGTTATGGAATTACGAGTG
63 TC-AATGAAAAGACCATAACTAGGTTATGGAATCACGAACG
99997012 TAAGACCATGGT
1 TAAGACCATGGT
99997024 AGGGCCATGG
Statistics
Matches: 95, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
102 21 0.22
103 2 0.02
104 4 0.04
105 68 0.72
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (102 bp):
TAAGACCATGGTTGAACCACGACAAATTGTTAAATGTAAGACCATAGCTAGGCTATGGAATCTCA
ATGAAAAGACCATAACTAGGTTATGGAATCACGAACG
Found at i:99997016 original size:33 final size:32
Alignment explanation
Indices: 99996942--99997020 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 32
99996932 TATATGTATA
* * *
99996942 AGTGTAAGACCATAGCTAGGTTATGGAATCCT
1 AGTGTAAGACCATAACTAGGTTATGGAATACG
* *
99996974 AATGATAAGACCATAACTGGGTTATGGAATTACG
1 AGTG-TAAGACCATAACTAGGTTATGGAA-TACG
99997008 AGTGTAAGACCAT
1 AGTGTAAGACCAT
99997021 GGTAGGGCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
32 3 0.08
33 31 0.79
34 5 0.13
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (32 bp):
AGTGTAAGACCATAACTAGGTTATGGAATACG
Found at i:99998531 original size:2 final size:2
Alignment explanation
Indices: 99998491--99998515 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
99998481 TAGAGATTTA
99998491 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
99998516 AGTATAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99999310 original size:11 final size:11
Alignment explanation
Indices: 99999294--99999324 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
99999284 TATGAATTAG
99999294 ATGAAATTGGT
1 ATGAAATTGGT
99999305 ATGAAATTGGT
1 ATGAAATTGGT
99999316 ATGAAATTG
1 ATGAAATTG
99999325 TTAGAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (11 bp):
ATGAAATTGGT
Found at i:100001118 original size:2 final size:2
Alignment explanation
Indices: 100001111--100001137 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
100001101 TGGTACAACT
100001111 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
100001138 TAATTGTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:100001420 original size:36 final size:36
Alignment explanation
Indices: 100001362--100001460 Score: 146
Period size: 36 Copynumber: 2.8 Consensus size: 36
100001352 CGTTGGACTA
*
100001362 GCTCTTGTGAGCAT-TGGTGTGTTTTGGAGGGATTG
1 GCTCATGTGAGCATCTGGTGTGTTTTGGAGGGATTG
* *
100001397 GTTCATGTGAGCATCTGGTGTGTTTTAGAGGGATTG
1 GCTCATGTGAGCATCTGGTGTGTTTTGGAGGGATTG
* *
100001433 GCTCGTGTGATCATCTGGTGTGTTTTGG
1 GCTCATGTGAGCATCTGGTGTGTTTTGG
100001461 TAGATCTGAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
35 12 0.21
36 44 0.79
ACGTcount: A:0.12, C:0.10, G:0.37, T:0.40
Consensus pattern (36 bp):
GCTCATGTGAGCATCTGGTGTGTTTTGGAGGGATTG
Found at i:100001556 original size:2 final size:2
Alignment explanation
Indices: 100001549--100001590 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
100001539 TGATGAAATC
*
100001549 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100001590 T
1 T
100001591 CTGAGCTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.