Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 333 of 378
Found at i:101055326 original size:9 final size:9
Alignment explanation
Indices: 101055302--101055331 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
101055292 TCATTTGGGT
101055302 AAAATAAAA
1 AAAATAAAA
101055311 TAAAATAAAA
1 -AAAATAAAA
101055321 AAAATAAAA
1 AAAATAAAA
101055330 AA
1 AA
101055332 GACACAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAATAAAA
Found at i:101066247 original size:16 final size:18
Alignment explanation
Indices: 101066220--101066252 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101066210 TTAGGTTAAA
101066220 TTATATAAA-TTTATTTT
1 TTATATAAATTTTATTTT
101066237 TTATA-AAATTTTATTT
1 TTATATAAATTTTATTT
101066253 AGGAAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATAAATTTTATTTT
Found at i:101070103 original size:29 final size:29
Alignment explanation
Indices: 101070071--101070134 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
101070061 AATTAATCTG
**
101070071 AATTTTTAAATTTAAAAATA-GAAAAACTA
1 AATTTTTAAAAGTAAAAATATG-AAAACTA
*
101070100 AATTCTTAAAAGTAAAAATATGAAAACTA
1 AATTTTTAAAAGTAAAAATATGAAAACTA
101070129 AATTTT
1 AATTTT
101070135 AAACTTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (29 bp):
AATTTTTAAAAGTAAAAATATGAAAACTA
Found at i:101072391 original size:19 final size:19
Alignment explanation
Indices: 101072362--101072407 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
101072352 CCATATATTT
*
101072362 TAAAT-TTATTTAGTTAGA
1 TAAATCTTATTTAGGTAGA
101072380 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
101072399 TAAATCTTA
1 TAAATCTTA
101072408 GAGATATTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (19 bp):
TAAATCTTATTTAGGTAGA
Found at i:101072849 original size:164 final size:164
Alignment explanation
Indices: 101072578--101072907 Score: 606
Period size: 164 Copynumber: 2.0 Consensus size: 164
101072568 CATCTGAGCT
*
101072578 AGGTTAAATCTCTAATAACATCATGGTTAAAACAACCTTCACTAGAGATAAGAGATCCAATAATC
1 AGGTTAAAACTCTAATAACATCATGGTTAAAACAACCTTCACTAGAGATAAGAGATCCAATAATC
101072643 AAACAGAGGAAGAAAGTTCTACCTTTGAAACAACTACCGAGAGTACAATGACTCAAGGGACAAAG
66 AAACAGAGGAAGAAAGTTCTACCTTTGAAACAACTACCGAGAGTACAATGACTCAAGGGACAAAG
* *
101072708 GTGTTTCATCTTTCTTTTCAGCTAACATCTTACA
131 GTCTTTCATCTTTCTTTTCAGCTAACATCTCACA
*
101072742 AGGTTAAAACTCTAATAACATCATGGTTAAAACAACCTTCACTGGAGATAAGAGATCCAATAATC
1 AGGTTAAAACTCTAATAACATCATGGTTAAAACAACCTTCACTAGAGATAAGAGATCCAATAATC
* *
101072807 AAATAGAGGAATAAAGTTCTACCTTTGAAACAACTACCGAGAGTACAATGACTCAAGGGACAAAG
66 AAACAGAGGAAGAAAGTTCTACCTTTGAAACAACTACCGAGAGTACAATGACTCAAGGGACAAAG
101072872 GTCTTTCATCTTTCTTTTCAGCTAACATCTCACA
131 GTCTTTCATCTTTCTTTTCAGCTAACATCTCACA
101072906 AG
1 AG
101072908 CTGAATGACA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
164 160 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (164 bp):
AGGTTAAAACTCTAATAACATCATGGTTAAAACAACCTTCACTAGAGATAAGAGATCCAATAATC
AAACAGAGGAAGAAAGTTCTACCTTTGAAACAACTACCGAGAGTACAATGACTCAAGGGACAAAG
GTCTTTCATCTTTCTTTTCAGCTAACATCTCACA
Found at i:101080429 original size:18 final size:18
Alignment explanation
Indices: 101080390--101080429 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
101080380 TTTAAAATAT
* *
101080390 AAATTTATTAATTTATAT
1 AAATTTATTAATGTATAA
*
101080408 AAATTTATTAATGTGTAA
1 AAATTTATTAATGTATAA
101080426 AAAT
1 AAAT
101080430 AGCTTTTTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (18 bp):
AAATTTATTAATGTATAA
Found at i:101082750 original size:43 final size:44
Alignment explanation
Indices: 101082603--101082748 Score: 124
Period size: 42 Copynumber: 3.4 Consensus size: 44
101082593 TATGTGTTAT
*
101082603 CGTGTAAGACCACGTCTAGG-AC-GTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTAGGAACAG-TGGCATCGATATT-TGA-TTA
* * * * * *
101082647 CGTGTAAGACCATGTCTGGGAA-ATTGGAATCG-TATATGATTT
1 CGTGTAAGACCACGTCTAGGAACAGTGGCATCGATATTTGATTA
**
101082689 CGTGTAAGACCTTGTCT-GGAACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCACGTCTAGGAACAGTGGCATCGATATTTGATTA
* *
101082732 CATATAAGACCACGTCT
1 CGTGTAAGACCACGTCT
101082749 GGGATGTTGG
Statistics
Matches: 81, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
41 4 0.05
42 26 0.32
43 24 0.30
44 26 0.32
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTAGGAACAGTGGCATCGATATTTGATTA
Found at i:101088879 original size:21 final size:21
Alignment explanation
Indices: 101088853--101088894 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
101088843 AATGTTTCAA
101088853 ATTTTGAGATGCTTGAAGAGT
1 ATTTTGAGATGCTTGAAGAGT
101088874 ATTTTGAGATGCTTGAAGAGT
1 ATTTTGAGATGCTTGAAGAGT
101088895 TCTCTTGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.38
Consensus pattern (21 bp):
ATTTTGAGATGCTTGAAGAGT
Found at i:101096646 original size:18 final size:19
Alignment explanation
Indices: 101096619--101096655 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
101096609 TCACTATCAC
*
101096619 CCACCGTAATC-AATTTGT
1 CCACCATAATCAAATTTGT
101096637 CCACCATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
101096656 TATTAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (19 bp):
CCACCATAATCAAATTTGT
Found at i:101099028 original size:3 final size:3
Alignment explanation
Indices: 101099020--101099206 Score: 113
Period size: 3 Copynumber: 63.0 Consensus size: 3
101099010 AAAGAGAAAT
* * * *
101099020 ATA ATA ATA GTA ATA ATA ATA TTTA ATTA ATTG AT- TTA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA A-TA A-TA ATA ATA ATA ATA ATA
** * * *
101099066 ATA ACG ATG ATA ATA ATA AT- ACA ATA ATA ATA A-A ATA GAAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * *
101099110 ATA ATA ACA AT- ACA ATA ATA ATA ATA GTA A-A GACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* *
101099154 ATA ATA ATA ATA ATA ATA ATA ATA TTA A-A ATTA ATTA AT- TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA A-TA ATA ATA ATA
101099199 ATA A-A ATA
1 ATA ATA ATA
101099207 GTTGAAATAA
Statistics
Matches: 144, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
2 13 0.09
3 114 0.79
4 17 0.12
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:101099086 original size:18 final size:18
Alignment explanation
Indices: 101099056--101099177 Score: 126
Period size: 18 Copynumber: 6.8 Consensus size: 18
101099046 TTAATTGATT
*
101099056 TAATAAT-ATAATAACGA
1 TAATAATAATAATAACAA
*
101099073 TGATAATAATAAT-ACAA
1 TAATAATAATAATAACAA
*
101099090 TAATAATAA-AATAGAAAA
1 TAATAATAATAATA-ACAA
*
101099108 TAATAATAACAAT-ACAA
1 TAATAATAATAATAACAA
*
101099125 TAATAATAATAGTAAAGACAA
1 TAATAATAATA--ATA-ACAA
*
101099146 TAATAATAATAATAATAA
1 TAATAATAATAATAACAA
101099164 TAATAATAATAATA
1 TAATAATAATAATA
101099178 TTAAAATTAA
Statistics
Matches: 88, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
16 3 0.03
17 30 0.34
18 34 0.39
19 6 0.07
21 15 0.17
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (18 bp):
TAATAATAATAATAACAA
Found at i:101100707 original size:44 final size:44
Alignment explanation
Indices: 101100600--101101064 Score: 187
Period size: 44 Copynumber: 10.3 Consensus size: 44
101100590 TAGTGGATTT
* * * *
101100600 AATCTGAC-CTACTGCAACTTCAGAGG-TATAAGA-TATGTTGCTTT
1 AATCTG-CTCTACTGTAACTTCAG-GGAGATAAGATTA-GTAGCTTC
* * * * *
101100644 AATCCGCTCCACTGCAACTTCAGGGGGATAGGATTAGTAGCTTC
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGATTAGTAGCTTC
* * * *
101100688 AATCTGCTCTACTGTAACTTTAGGGAGATAAGAGTCGCTATCTTC
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGATTAG-TAGCTTC
** * * *
101100733 AATCTATTCTACTGTAACTACAAGGAGATAAGATCTA-TAACTTC
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGAT-TAGTAGCTTC
* * *
101100777 AATCTGCTCTACTGCT-ACTTCAAGGAGATGAGATTTGTAATTTGTAGCTTT
1 AATCTGCTCTACTG-TAACTTCAGGGAGAT-A-A---G--ATTAGTAGCTTC
* * * * * ** * * *
101100828 AATATGTTCCACCGCAA-TGTCAAAGATATAAGATTTGTTATCTTC
1 AATCTGCTCTACTGTAACT-TCAGGGAGATAAGATTAG-TAGCTTC
* * * * *
101100873 AGA-GTGCTCCACT-TCAACTTCAAGGAGAAAAGATTTA-TAGCTTT
1 A-ATCTGCTCTACTGT-AACTTCAGGGAGATAAGA-TTAGTAGCTTC
** * * *
101100917 AATCTGCTCTACTACAACTTCAGAGAGATAATATTCA-TAGCTTT
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGATT-AGTAGCTTC
* * * * **
101100961 AATCTACTTTACTGTAACTTCAGAGAGATAAGATTCACTATATTC
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGATT-AGTAGCTTC
* * * **
101101006 AGTCTGCTCTACTGCAATTTCAGGGAGATAAGACTT-GTAATTTC
1 AATCTGCTCTACTGTAACTTCAGGGAGATAAGA-TTAGTAGCTTC
*
101101050 AACCTGCTCTACTGT
1 AATCTGCTCTACTGT
101101065 TGTAATATCC
Statistics
Matches: 320, Mismatches: 75, Indels: 52
0.72 0.17 0.12
Matches are distributed among these distances:
43 6 0.02
44 179 0.56
45 95 0.30
46 9 0.03
49 2 0.01
50 3 0.01
51 26 0.08
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (44 bp):
AATCTGCTCTACTGTAACTTCAGGGAGATAAGATTAGTAGCTTC
Found at i:101102403 original size:45 final size:45
Alignment explanation
Indices: 101102354--101102527 Score: 208
Period size: 45 Copynumber: 3.8 Consensus size: 45
101102344 TGGTTGAGCA
*
101102354 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
*** * * * *
101102399 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-A-ACG
*
101102446 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
*
101102492 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101102528 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 66 0.61
46 12 0.11
47 30 0.28
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
Found at i:101102508 original size:92 final size:92
Alignment explanation
Indices: 101102351--101102519 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
101102341 GGATGGTTGA
*
101102351 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCGTTGAGTT
101102416 GAGTCCGAGTTCGAGAGATGTAACTAG
66 GAGTCCGAGTTCGAGAGATGTAACTAG
* *
101102443 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGTCCGAACTCGTTGAGT
101102507 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
101102520 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 70 0.96
93 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:101105475 original size:14 final size:15
Alignment explanation
Indices: 101105426--101105475 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
101105416 GTATCTTGGG
*
101105426 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
101105441 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
101105456 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
101105470 TTTCTT
1 TTTCTT
101105476 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:101106912 original size:46 final size:46
Alignment explanation
Indices: 101106862--101107037 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
101106852 TATTTGGGCA
101106862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
101106908 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
101106955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
101107001 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101107038 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:101107017 original size:93 final size:93
Alignment explanation
Indices: 101106858--101107029 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
101106848 TGGATATTTG
* *
101106858 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101106923 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
101106951 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101107016 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
101107030 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:101112405 original size:40 final size:39
Alignment explanation
Indices: 101112348--101112568 Score: 247
Period size: 38 Copynumber: 5.6 Consensus size: 39
101112338 TCGAATGATG
* * * *
101112348 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
101112388 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
101112427 -CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
101112466 TCCGG-GTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
**
101112504 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
101112544 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
101112569 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
38 69 0.42
39 39 0.24
40 49 0.30
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:101112590 original size:78 final size:76
Alignment explanation
Indices: 101112355--101112591 Score: 252
Period size: 78 Copynumber: 3.0 Consensus size: 76
101112345 ATGTCCGGGC
* * *
101112355 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAG-TCCGAAGGCATTTGTGCGA
*
101112419 GTTACTAA-CCGGAC
63 GTTACTAATCCGG-T
101112433 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGG-TAAGTCCGAAGGCATTTGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAG-TACTATAA-CCGGGCTAAGTCCGAAGGCATTTGTGCGA
101112495 GTTACTAAATCCGGGT
63 GTTACT-AATCC-GGT
* * **
101112511 TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTATGTCCCGAAGGTATTTGAACGAG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGT
101112575 TAGCTATATCCGGT
65 TA-CTA-ATCCGGT
101112589 TAA
1 TAA
101112592 ACTCCGAAGG
Statistics
Matches: 138, Mismatches: 8, Indels: 26
0.80 0.05 0.15
Matches are distributed among these distances:
76 25 0.18
77 18 0.13
78 62 0.45
79 33 0.24
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (76 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTT
ACTAATCCGGT
Found at i:101120685 original size:40 final size:40
Alignment explanation
Indices: 101120460--101120657 Score: 283
Period size: 40 Copynumber: 5.0 Consensus size: 40
101120450 TCGAATGATG
* * * * *
101120460 TCCGGGCTAAG-TCCCGAAGGC-TTTGTACTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
101120500 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
101120540 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
101120580 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
101120620 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
101120658 TAACCGGGCT
Statistics
Matches: 147, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
40 140 0.95
41 7 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:101120703 original size:80 final size:79
Alignment explanation
Indices: 101120494--101120708 Score: 256
Period size: 80 Copynumber: 2.7 Consensus size: 79
101120484 GTACTAAGTG
* ** *
101120494 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGG-TTAAGATCCGAAG
*
101120559 GCATTTGTGCGAGTT
65 GCATTTGTGCGAGCT
** *
101120574 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTTCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAGATCCGAAG
101120639 GCATTTGTGCGAGCT
65 GCATTTGTGCGAGCT
* * * *
101120654 ACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAG-TAGCTATATCCGGTTAA
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAA
101120709 ACTCTGAAGG
Statistics
Matches: 121, Mismatches: 10, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
79 9 0.07
80 108 0.89
81 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (79 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAGATCCGAAGG
CATTTGTGCGAGCT
Found at i:101123211 original size:11 final size:11
Alignment explanation
Indices: 101123195--101123224 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
101123185 CCAATTTGTG
101123195 AAAAATAAAAT
1 AAAAATAAAAT
101123206 AAAAATAAAAT
1 AAAAATAAAAT
101123217 -AAAATAAA
1 AAAAATAAA
101123225 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:101124201 original size:2 final size:2
Alignment explanation
Indices: 101124194--101124219 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
101124184 TTCAAGGAAC
101124194 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
101124220 ACTCTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101131789 original size:2 final size:2
Alignment explanation
Indices: 101131782--101131818 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
101131772 TTTCAGGTTA
101131782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
101131819 CACGTAAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:101138698 original size:37 final size:37
Alignment explanation
Indices: 101138648--101138722 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
101138638 ATGATAAGGA
*
101138648 GAATGTACTGTGACATACTGCTGTGCACCCTTATGCT
1 GAATGTACTGTGACATACTGCTGTGCACCCTCATGCT
101138685 GAATGTACTGTGACATACTGCTGTGCACCCTCATGCT
1 GAATGTACTGTGACATACTGCTGTGCACCCTCATGCT
101138722 G
1 G
101138723 CCTGGACTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (37 bp):
GAATGTACTGTGACATACTGCTGTGCACCCTCATGCT
Found at i:101146915 original size:19 final size:18
Alignment explanation
Indices: 101146893--101146950 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
101146883 TAAAAAAATT
101146893 AAAATTACTAAAAATATAG
1 AAAATTA-TAAAAATATAG
*
101146912 AAAATTATTAAAAATATTAT
1 AAAATTA-TAAAAATA-TAG
*
101146932 AAAA-TATAAACATATAG
1 AAAATTATAAAAATATAG
101146949 AA
1 AA
101146951 TTATCTGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 4 0.12
18 7 0.21
19 17 0.50
20 6 0.18
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAATTATAAAAATATAG
Found at i:101146924 original size:37 final size:37
Alignment explanation
Indices: 101146856--101146950 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 37
101146846 AATTATTAAA
** *
101146856 AAAACTATAAAAATATTTAAATTTTATTAAAAAAATTA-
1 AAAA-TATAAAAATATAGAAA-ATTATTAAAAAAATTAT
* *
101146894 AAATTACTAAAAATATAGAAAATTATTAAAAATATTAT
1 AAAATA-TAAAAATATAGAAAATTATTAAAAAAATTAT
*
101146932 AAAATATAAACATATAGAA
1 AAAATATAAAAATATAGAA
101146951 TTATCTGAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 28 0.58
38 20 0.42
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (37 bp):
AAAATATAAAAATATAGAAAATTATTAAAAAAATTAT
Found at i:101147100 original size:21 final size:21
Alignment explanation
Indices: 101147076--101147115 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
101147066 TAAAATCAAT
101147076 AAAAACA-TAAAAATATTATAG
1 AAAAACATTAAAAAT-TTATAG
*
101147097 AAAAATATTAAAAATTTAT
1 AAAAACATTAAAAATTTAT
101147116 TAAAATGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
AAAAACATTAAAAATTTATAG
Found at i:101147469 original size:10 final size:10
Alignment explanation
Indices: 101147454--101147503 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
101147444 ATAATTTTAA
*
101147454 ATTTTTCTAT
1 ATTTTTATAT
*
101147464 ATTTTTAAAT
1 ATTTTTATAT
*
101147474 ATTTTTAAAT
1 ATTTTTATAT
101147484 ATTTTTCTATAT
1 A-TTTT-TATAT
101147496 ATTTTTAT
1 ATTTTTAT
101147504 TTTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 22 0.63
11 8 0.23
12 5 0.14
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:101147942 original size:22 final size:22
Alignment explanation
Indices: 101147915--101147966 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
101147905 AATACGTCTC
* *
101147915 GTGGTGATTGAGACTAATGTAG
1 GTGGTGATTAAGACTAATGCAG
*
101147937 GTGGTGATTAAGACTGATGCAG
1 GTGGTGATTAAGACTAATGCAG
*
101147959 ATGGTGAT
1 GTGGTGAT
101147967 GATGGATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.06, G:0.37, T:0.31
Consensus pattern (22 bp):
GTGGTGATTAAGACTAATGCAG
Found at i:101157948 original size:14 final size:14
Alignment explanation
Indices: 101157929--101157955 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101157919 AATTATTTGA
101157929 TTTTTTTTTTTGTT
1 TTTTTTTTTTTGTT
101157943 TTTTTTTTTTTGT
1 TTTTTTTTTTTGT
101157956 CTTTGACAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (14 bp):
TTTTTTTTTTTGTT
Found at i:101158240 original size:18 final size:19
Alignment explanation
Indices: 101158209--101158244 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
101158199 CACACAAAAA
101158209 AAAAAAACTAAAATTACAG
1 AAAAAAACTAAAATTACAG
*
101158228 AAAACAACT-AAATTACA
1 AAAAAAACTAAAATTACA
101158245 CAATGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.67, C:0.14, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAAAACTAAAATTACAG
Found at i:101159667 original size:27 final size:29
Alignment explanation
Indices: 101159605--101159670 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 29
101159595 TTTATTGAGT
*
101159605 TAATAATATTAATGATAATTTATTTTTAA
1 TAATAATATTAATGATAATTTATTATTAA
* *
101159634 -ATTTAAT-TTAAT-TTAATTTATTATTAA
1 TA-ATAATATTAATGATAATTTATTATTAA
101159661 TAATAATATT
1 TAATAATATT
101159671 TTTTAGAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
27 17 0.57
28 9 0.30
29 4 0.13
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
TAATAATATTAATGATAATTTATTATTAA
Found at i:101162184 original size:45 final size:45
Alignment explanation
Indices: 101162107--101162284 Score: 166
Period size: 45 Copynumber: 4.0 Consensus size: 45
101162097 TAGGATTTTG
* ** * * *
101162107 ATATGTATTTTCAAGTAAGACCACGTCAGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
*
101162152 ATATGTGTTTTCGTGTAAAACCATGTCTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * * *
101162197 ATATGTGGTTACGTGTGAGACCATGTCTGGAACATCGGCATCG-T
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * * * *
101162241 AT-T-AG-ATTCGAGTAAGACCCTGTTTGGGACAGTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
101162283 AT
1 AT
101162285 GAGATAGCAT
Statistics
Matches: 109, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
41 26 0.24
42 4 0.04
43 1 0.01
44 3 0.03
45 75 0.69
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:101163132 original size:2 final size:2
Alignment explanation
Indices: 101163127--101163153 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
101163117 TATATATATA
101163127 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
101163154 ATTGTTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:101163264 original size:2 final size:2
Alignment explanation
Indices: 101163257--101163294 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
101163247 GAGTGATGTT
101163257 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
101163295 TTGAGATGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101175805 original size:55 final size:55
Alignment explanation
Indices: 101175684--101175817 Score: 200
Period size: 55 Copynumber: 2.4 Consensus size: 55
101175674 GCCCATATGT
101175684 CTTGACCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
1 CTTGACCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
** * *
101175739 CTT-AGTTGTGGTCGGCATTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
1 CTTGA-CCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
101175794 CTTGACCGTGGTCGAGC-CTGACTT
1 CTTGACCGTGGTCGA-CACTGACTT
101175818 ACAAATGTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
54 1 0.01
55 65 0.96
56 2 0.03
ACGTcount: A:0.15, C:0.31, G:0.30, T:0.24
Consensus pattern (55 bp):
CTTGACCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
Found at i:101176919 original size:40 final size:40
Alignment explanation
Indices: 101176851--101176927 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
101176841 TAGTGGCACA
**
101176851 TATAGCCGAAGCTATTCCAATTCACACACCTAGTGCTATT
1 TATAGCCGAAGCTATTCCAAACCACACACCTAGTGCTATT
* * *
101176891 TATAGCCGAAGCTATTTCAAACCGCACACTTAGTGCT
1 TATAGCCGAAGCTATTCCAAACCACACACCTAGTGCT
101176928 GAACATAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCCAAACCACACACCTAGTGCTATT
Found at i:101182840 original size:55 final size:56
Alignment explanation
Indices: 101182647--101182845 Score: 271
Period size: 55 Copynumber: 3.6 Consensus size: 56
101182637 CACAATACAT
* *
101182647 GCCCGTGTGTCTTGGCCGTGGTCGA-CACTGACTTGGGTCACACAACTAGCCACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGAGCACTGACTTGGGTCACACAGCTAGCCACAC
* * * *
101182702 GCCCGTGTGCCTTAGCCGTGGTCG-GCAATGAATTGGGTCACACAGCTAGCCACAT
1 GCCCGTGTGCCTTGGCCGTGGTCGAGCACTGACTTGGGTCACACAGCTAGCCACAC
* * *
101182757 GTCCGTGTGCCTTGGCCATGATCGAGC-CTGACTTGGGTCACACAGCTAGCCACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGAGCACTGACTTGGGTCACACAGCTAGCCACAC
* *
101182812 GCCCATGTGCCTTGGCCGTGGTCAAGC-CTGACTT
1 GCCCGTGTGCCTTGGCCGTGGTCGAGCACTGACTT
101182846 ACAAATGTAA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
55 122 0.98
56 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.28, T:0.23
Consensus pattern (56 bp):
GCCCGTGTGCCTTGGCCGTGGTCGAGCACTGACTTGGGTCACACAGCTAGCCACAC
Found at i:101183724 original size:19 final size:19
Alignment explanation
Indices: 101183700--101183742 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
101183690 CACAAACTCG
101183700 TACTTAACTATTACATTAT
1 TACTTAACTATTACATTAT
*
101183719 TACTTAACTATTATATTAT
1 TACTTAACTATTACATTAT
*
101183738 CACTT
1 TACTT
101183743 CAATGCTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (19 bp):
TACTTAACTATTACATTAT
Found at i:101194695 original size:47 final size:47
Alignment explanation
Indices: 101194641--101194834 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
101194631 TTAGGATTTT
** *
101194641 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
101194688 ATGTGATGAATGTGAACATGCATATATGTGATAAGGACGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
101194735 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
101194782 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
101194829 ATGTGA
1 ATGTGA
101194835 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:101194963 original size:98 final size:96
Alignment explanation
Indices: 101194805--101194988 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
101194795 GAACATGCAT
*
101194805 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
101194870 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
101194901 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
101194965 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
101194989 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:101195004 original size:50 final size:48
Alignment explanation
Indices: 101194804--101194988 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
101194794 TGAACATGCA
*
101194804 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
101194852 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
101194900 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
101194950 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
101194989 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:101195242 original size:37 final size:37
Alignment explanation
Indices: 101195134--101195242 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
101195124 GGAAATATAT
*
101195134 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
101195171 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
101195208 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
101195243 CGTCTAAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:101200169 original size:20 final size:21
Alignment explanation
Indices: 101200141--101200181 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
101200131 GAATACCATT
*
101200141 AATATTGATTGAATATTAATA
1 AATATTGATAGAATATTAATA
*
101200162 AATA-TGATAGTATATTAATA
1 AATATTGATAGAATATTAATA
101200182 TAAAATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
AATATTGATAGAATATTAATA
Found at i:101200648 original size:9 final size:9
Alignment explanation
Indices: 101200634--101200660 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
101200624 CCACATCAGC
101200634 AAAAATTAA
1 AAAAATTAA
101200643 AAAAATTAA
1 AAAAATTAA
101200652 AAAAATTAA
1 AAAAATTAA
101200661 GAAACATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAATTAA
Found at i:101202414 original size:17 final size:18
Alignment explanation
Indices: 101202364--101202414 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
101202354 ATTTTTTATA
*
101202364 ATAATATTTTTACAAATTT
1 ATAATCTTTTTA-AAATTT
*
101202383 ATAATCTTTTAAAAATATT
1 ATAATCTTTTTAAAAT-TT
101202402 -TAA-CTTTTTAAAA
1 ATAATCTTTTTAAAA
101202415 AATTAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATCTTTTTAAAATTT
Found at i:101208418 original size:3 final size:3
Alignment explanation
Indices: 101208410--101208475 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
101208400 AAATAGAATA
*
101208410 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AG AACG AAC AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AAG
*
101208455 AA- AA- AAG -AG AAG GAG -AG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
101208476 GTAGCAAAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
2 10 0.18
3 42 0.76
4 3 0.05
ACGTcount: A:0.65, C:0.03, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:101211139 original size:3 final size:3
Alignment explanation
Indices: 101211131--101211162 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
101211121 AATTTGTTTT
101211131 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
101211163 CACCTGTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:101215275 original size:16 final size:16
Alignment explanation
Indices: 101215242--101215275 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
101215232 TCCTACCATT
* *
101215242 AATAATTAAAATAAAA
1 AATAAATAAAAAAAAA
101215258 AATAAATAAAAAAAAA
1 AATAAATAAAAAAAAA
101215274 AA
1 AA
101215276 CATACTCGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AATAAATAAAAAAAAA
Found at i:101221945 original size:14 final size:14
Alignment explanation
Indices: 101221926--101221954 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
101221916 TACTCTTCTA
101221926 ATCAAATTCTAATT
1 ATCAAATTCTAATT
101221940 ATCAAATTCTAATT
1 ATCAAATTCTAATT
101221954 A
1 A
101221955 ATGATGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (14 bp):
ATCAAATTCTAATT
Found at i:101227484 original size:16 final size:15
Alignment explanation
Indices: 101227451--101227489 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
101227441 TAGAAAAATT
*
101227451 AATTAAAAACAAAGA
1 AATTAAAAACAAAAA
*
101227466 AATTACAAAATAAAAA
1 AATTA-AAAACAAAAA
101227482 AATTAAAA
1 AATTAAAA
101227490 TAACAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (15 bp):
AATTAAAAACAAAAA
Found at i:101229566 original size:14 final size:15
Alignment explanation
Indices: 101229549--101229581 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
101229539 GTAAGAAAAT
*
101229549 AAATAAAA-AAGTAA
1 AAATAAAATAAATAA
101229563 AAATAAAATAAATAA
1 AAATAAAATAAATAA
101229578 AAAT
1 AAAT
101229582 GATTATAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (15 bp):
AAATAAAATAAATAA
Found at i:101238942 original size:21 final size:23
Alignment explanation
Indices: 101238895--101238937 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
101238885 TTTATATTTT
101238895 AAATATTAAAATATAACTATTAC
1 AAATATTAAAATATAACTATTAC
101238918 AAAT-TTAAATATATAA-TATT
1 AAATATTAAA-ATATAACTATT
101238938 GAAATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATATTAAAATATAACTATTAC
Found at i:101239481 original size:2 final size:2
Alignment explanation
Indices: 101239474--101239509 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
101239464 ACAAAATTCA
101239474 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101239510 TTTAAAACAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101247131 original size:20 final size:23
Alignment explanation
Indices: 101247083--101247132 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
101247073 TTTTCCTGCA
101247083 TCATATTTATTTTTTCATATTGAT
1 TCATATTTATTTTTTCATATT-AT
*
101247107 ACATATTT-TTTTTTCA-ATT-T
1 TCATATTTATTTTTTCATATTAT
101247127 TCATAT
1 TCATAT
101247133 CTAAAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.25
22 3 0.12
23 8 0.33
24 7 0.29
ACGTcount: A:0.26, C:0.10, G:0.02, T:0.62
Consensus pattern (23 bp):
TCATATTTATTTTTTCATATTAT
Found at i:101249269 original size:75 final size:75
Alignment explanation
Indices: 101249186--101249338 Score: 184
Period size: 75 Copynumber: 2.0 Consensus size: 75
101249176 TAGTTGTCCC
* * * * *
101249186 ATAATTTTTTGGTGTTATAG-G-AATCAAGTTGACAATATGTTTGCAACGTGTTGACTGCTTCTA
1 ATAATTTTTTGATGTCAT-GTGAAAT-AAGTTGACAACATGTTCGCAACGTGTTGACTACTTCTA
101249249 TTAGAATTTTAT
64 TTAGAATTTTAT
* * *
101249261 ATAATTTTTTGATGTCATGTGAAATAGGTTGACAACATGTTCGCAACTTGTTGACTACTTTTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACGTGTTGACTACTTCTATT
* *
101249326 AGGATTTTGT
66 AGAATTTTAT
101249336 ATA
1 ATA
101249339 TAAATTACTA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
74 1 0.02
75 62 0.94
76 3 0.05
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACGTGTTGACTACTTCTATT
AGAATTTTAT
Found at i:101249644 original size:37 final size:38
Alignment explanation
Indices: 101249521--101250249 Score: 468
Period size: 37 Copynumber: 19.9 Consensus size: 38
101249511 ATTGGACATG
* * *
101249521 AGACAAAGATCTATCCCAAC-CTTTTTTAAGTTTGCCTT
1 AGAC-AAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * *
101249559 AGAC-AGGTTTA-CCCTAAC--CTTTTTAAGGTTGCTTT
1 AGACAAGGTCTATCCC-AACTTTTTTTTAAGGTTGCCTT
* * *
101249594 AGACGA-GTTTATCCGAACTTTTTTTTAA-GTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * *
101249630 AGAAAAGGTCTATCCCAAC--CTTTTTAGGGTTG-TTGT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCT-T
* * * * *
101249666 AAACAA-GTCTAT-GCAA--TATTTTTAACGTTGTCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * * * *
101249700 AGAC-AGGTCAATCCTAACCTTTTCTAAAAGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * *
101249737 AGACAAGATTTATCCCAAC--CTTTTTAAGGTTACCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* *
101249773 AGACGAA--TCTATCCCAAC--CTTTTTAAGGTTGCTTTT
1 AGAC-AAGGTCTATCCCAACTTTTTTTTAAGGTTGC-CTT
* *
101249809 AGACAA-GTCTATCCCAACCTTTTATTAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
*
101249846 AGACAA-GTCTATCCCAACCTTTTTTTAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * *
101249883 AGAC-AGATCTATCCCAACCTTTTTTAAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * **
101249920 AGATAAGGTTTAT-CCAACTTTTTTAAAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * ** * *
101249957 AGATAAGGTCTAT-CCTACCCTTTTTAAATGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * *
101249994 AGACAAGGTCTATACTAAC--CTATTTAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * *
101250030 AGACGA-TTCTATCCCAA-TCATTTTTAAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACT-TTTTTTTAAGGTTGCCTT
* * *
101250067 AGACAAGGTTTATCACAA-TTTTTTTTAAATGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTT-AAGGTTGCCTT
* * **
101250105 AGACAAGGTCTATCCCAACTTTTTTTAAAAAGTTATCTT
1 AGACAAGGTCTATCCCAACTTTTTTT-TAAGGTTGCCTT
* *
101250144 AGAC-TGGTCTATCCCAAC--CTTTTTAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
* * * **
101250179 AGAC-ATGTCTATCACAACCTTTTTCAAAGGTTGGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTT-GCCTT
* * ** *
101250217 A-ACTAGGCCTATCCCAACCCTTTTTAAAGGTTG
1 AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTG
101250250 GTATTGACTA
Statistics
Matches: 553, Mismatches: 104, Indels: 69
0.76 0.14 0.10
Matches are distributed among these distances:
33 1 0.00
34 22 0.04
35 101 0.18
36 87 0.16
37 211 0.38
38 112 0.20
39 19 0.03
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (38 bp):
AGACAAGGTCTATCCCAACTTTTTTTTAAGGTTGCCTT
Found at i:101249775 original size:73 final size:70
Alignment explanation
Indices: 101249521--101250249 Score: 583
Period size: 73 Copynumber: 9.9 Consensus size: 70
101249511 ATTGGACATG
* *
101249521 AGACAAAGATCTATCCCAACCTTTTTTAAGTTTGCCTTAGACAGGTTTA-CCCTAACCTTTTTAA
1 AGAC-AAG-TCTATCCCAACC-TTTTTAAGGTTGCCTTAGACAGGTCTATCCC-AACCTTTTTAA
*
101249585 GGTTGCTTT
62 GGTTGCCTT
* * * * * *
101249594 AGACGAGTTTATCCGAACTTTTTTTTAA-GTTGCCTTAGAAAAGGTCTATCCCAACCTTTTTAGG
1 AGACAAGTCTATCCCAAC--CTTTTTAAGGTTGCCTTAG-ACAGGTCTATCCCAACCTTTTTAAG
*
101249658 GTTG-TTGT
63 GTTGCCT-T
* * ** * * * * *
101249666 AAACAAGTCTAT-GCAATATTTTTAACGTTGTCTTAGACAGGTCAATCCTAACCTTTTCTAAAAG
1 AGACAAGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTT-T-AAGG
101249730 TTGCCTT
64 TTGCCTT
* * *
101249737 AGACAAGATTTATCCCAACCTTTTTAAGGTTACCTTAGAC-GAATCTATCCCAACCTTTTTAAGG
1 AGACAAG-TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTAAGG
*
101249801 TTGCTTTT
64 TTGC-CTT
*
101249809 AGACAAGTCTATCCCAACCTTTTATTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTTAA
1 AGACAAGTCTATCCCAACC-TTT-TTAAGGTTGCCTTAGACAGGTCTATCCCAACC--TTTTTAA
101249874 GGTTGCCTT
62 GGTTGCCTT
* * *
101249883 AGAC-AGATCTATCCCAACCTTTTTTAAAGGTTGCCTTAGATAAGGTTTAT-CCAACTTTTTTAA
1 AGACAAG-TCTATCCCAACC-TTTTT-AAGGTTGCCTTAGA-CAGGTCTATCCCAACCTTTTT--
101249946 AAGGTTGCCTT
60 AAGGTTGCCTT
* * * * * * *
101249957 AGATAAGGTCTATCCTACCCTTTTTAAATGTTGCCTTAGACAAGGTCTATACTAACCTATTTAAG
1 AGACAA-GTCTATCCCAACCTTTTT-AAGGTTGCCTTAGAC-AGGTCTATCCCAACCTTTTTAAG
101250022 GTTGCCTT
63 GTTGCCTT
* * * * * **
101250030 AGACGATTCTATCCCAATCATTTTTAAAGGTTGCCTTAGACAAGGTTTATCACAATTTTTTTTAA
1 AGACAAGTCTATCCCAA-CCTTTTT-AAGGTTGCCTTAGAC-AGGTCTATCCCAA-CCTTTTT-A
*
101250095 ATGTTGCCTT
61 AGGTTGCCTT
* * ** *
101250105 AGACAAGGTCTATCCCAACTTTTTTTAAAAAGTTATCTTAGACTGGTCTATCCCAACCTTTTTAA
1 AGACAA-GTCTATCCCAAC-CTTTTT--AAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAA
101250170 GGTTGCCTT
62 GGTTGCCTT
* * *
101250179 AGACATGTCTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGGCCTATCCCAACCCTTTTTA
1 AGACAAGTCTATCCCAACCTTTTT--AAGGTT-GCCTTAGAC-AGGTCTATCCCAA-CCTTTTT-
101250243 AAGGTTG
60 AAGGTTG
101250250 GTATTGACTA
Statistics
Matches: 530, Mismatches: 89, Indels: 72
0.77 0.13 0.10
Matches are distributed among these distances:
69 25 0.05
70 10 0.02
71 52 0.10
72 86 0.16
73 145 0.27
74 107 0.20
75 66 0.12
76 26 0.05
77 13 0.02
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (70 bp):
AGACAAGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAGGTT
GCCTT
Found at i:101249990 original size:111 final size:109
Alignment explanation
Indices: 101249521--101250249 Score: 542
Period size: 111 Copynumber: 6.6 Consensus size: 109
101249511 ATTGGACATG
* * * * *
101249521 AGACAAAGATCTATCCCAACCTTTTTTAAGTTTGCCTTAGACAGGTTTA-CCCTAACCTTTTTAA
1 AGAC-AAGGTCTATCCAAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCC-AACCTTTTTAA
* * * * * *
101249585 GGTTGCTTTAG-ACGAGTTTATCCGAACTTTTTTTTAA-GTTGCCTT
64 GGTTGCCTTAGAAAG-GTCTATCCCAACCTTTTTTAAAGGTTGCCTT
* * * * * * * ** *
101249630 AGAAAAGGTCTATCCCAACCTTTTT-AGGGTTG-TTGTAAACAAGTCTAT-GCAATATTTTTAAC
1 AGACAAGGTCTATCCAAACCTTTTTAAAGGTTGCCT-TAGACAGGTCTATCCCAACCTTTTTAAG
* * * * * *
101249692 GTTGTCTTAGACAGGTCAATCCTAACCTTTTCTAAAAGTTGCCTT
65 GTTGCCTTAGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
* * * * *
101249737 AGACAAGATTTATCCCAACCTTTTT-AAGGTTACCTTAGAC-GAATCTATCCCAACCTTTTTAAG
1 AGACAAGGTCTATCCAAACCTTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTAAG
*
101249800 GTTGCTTTTAGACAA-GTCTATCCCAACCTTTTATT-AAGGTTGCCTT
65 GTTGC-CTTAGA-AAGGTCTATCCCAACCTTTT-TTAAAGGTTGCCTT
* * *
101249846 AGACAA-GTCTATCCCAACCTTTTTTTAAGGTTGCCTTAGACAGATCTATCCCAACCTTTTTTAA
1 AGACAAGGTCTATCCAAACC-TTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACC-TTTTT-A
*
101249910 AGGTTGCCTTAGATAAGGTTTAT-CCAA-CTTTTTTAAAAGGTTGCCTT
63 AGGTTGCCTTAGA-AAGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTT
* * * * * * *
101249957 AGATAAGGTCTATCCTACCCTTTTTAAATGTTGCCTTAGACAAGGTCTATACTAACCTATTTAAG
1 AGACAAGGTCTATCCAAACCTTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAACCTTTTTAAG
* * * *
101250022 GTTGCCTTAG-ACGATTCTATCCCAATCATTTTTAAAGGTTGCCTT
65 GTTGCCTTAGAAAG-GTCTATCCCAACCTTTTTTAAAGGTTGCCTT
* *** * *
101250067 AGACAAGGTTTATCACAATTTTTTTTAAATGTTGCCTTAGACAAGGTCTATCCCAACTTTTTTTA
1 AGACAAGGTCTATC-CAAACCTTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAAC-CTTTTT-
* ** **
101250132 AAAAGTTATCTTAGACTGGTCTATCCCAACC-TTTTT-AAGGTTGCCTT
62 -AAGGTTGCCTTAGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
* *
101250179 AGAC-ATGTCTAT-CACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGGCCTATCCCAACCCTTTT
1 AGACAAGGTCTATCCA-AACCTTTTT-AAAGGTT-GCCTTAGAC-AGGTCTATCCCAA-CCTTTT
101250241 TAAAGGTTG
61 T-AAGGTTG
101250250 GTATTGACTA
Statistics
Matches: 499, Mismatches: 89, Indels: 63
0.77 0.14 0.10
Matches are distributed among these distances:
106 34 0.07
107 60 0.12
108 48 0.10
109 52 0.10
110 87 0.17
111 129 0.26
112 62 0.12
113 5 0.01
114 21 0.04
115 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (109 bp):
AGACAAGGTCTATCCAAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAGG
TTGCCTTAGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
Found at i:101250260 original size:38 final size:38
Alignment explanation
Indices: 101250187--101250261 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
101250177 TTAGACATGT
*
101250187 CTATCACAACCTTTTTCAAAGGTTGGCCTTAACTAGGC
1 CTATCACAACCTTTTTCAAAGGTTGGCATTAACTAGGC
* * *
101250225 CTATCCCAACCCTTTTT-AAAGGTTGGTATTGACTAGG
1 CTATCACAA-CCTTTTTCAAAGGTTGGCATTAACTAGG
101250262 TCTTTCCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 25 0.78
39 7 0.22
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (38 bp):
CTATCACAACCTTTTTCAAAGGTTGGCATTAACTAGGC
Found at i:101252689 original size:19 final size:18
Alignment explanation
Indices: 101252667--101252706 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
101252657 TGAATAAAAC
101252667 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
101252686 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
101252704 TTA
1 TTA
101252707 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:101256429 original size:40 final size:40
Alignment explanation
Indices: 101256385--101256513 Score: 195
Period size: 40 Copynumber: 3.2 Consensus size: 40
101256375 CTCTCGATAC
101256385 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*
101256425 AATATATATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGT
1 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
101256465 AATATATATATTCGGGTTAAATCCCGCAGGCTTAGTGCTAGT
1 -A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*
101256507 ACTATAT
1 AATATAT
101256514 CCGGACTTAG
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 44 0.54
41 2 0.02
42 35 0.43
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (40 bp):
AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:101256513 original size:42 final size:41
Alignment explanation
Indices: 101256386--101256513 Score: 195
Period size: 42 Copynumber: 3.1 Consensus size: 41
101256376 TCTCGATACA
101256386 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA-
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
101256426 ATATATATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-AT
* * *
101256468 ATATATATTCGGGTTAAATCCCGCAGGCTTAGTGCTAGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA-T
101256510 ATAT
1 ATAT
101256514 CCGGACTTAG
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 38 0.47
41 2 0.03
42 40 0.50
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (41 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:101257646 original size:13 final size:13
Alignment explanation
Indices: 101257630--101257663 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
101257620 TAAATTATAA
*
101257630 ATTATTATTAACT
1 ATTATTATTAAAT
101257643 ATTATTATTAAAT
1 ATTATTATTAAAT
*
101257656 AATATTAT
1 ATTATTAT
101257664 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:101257715 original size:17 final size:17
Alignment explanation
Indices: 101257693--101257727 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
101257683 AAATGAAGAA
*
101257693 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
101257710 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
101257727 A
1 A
101257728 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:101259352 original size:39 final size:39
Alignment explanation
Indices: 101259245--101259379 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
101259235 GACCTCGAGT
* * * *
101259245 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
101259286 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
101259324 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
101259363 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
101259380 CTATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:101264104 original size:61 final size:62
Alignment explanation
Indices: 101263980--101264136 Score: 178
Period size: 61 Copynumber: 2.6 Consensus size: 62
101263970 CTTCTAAAAG
* * * * * *
101263980 TTTACACATTTTATTAATTTAATTCTAA-TCT-AAACAATTCAACAAATTTAACCCTTAATA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATTCAAAAAATTTAACCCTCAATA
* **
101264040 TTTACAAAATTTATCATTTTAATTCTAATTCTAAAAAAATT-AAAAAATTTTGCCCTCAATA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATTCAAAAAATTTAACCCTCAATA
* * *
101264101 TTTACAAAATTTGTGAATTTAGTTCTAATT-TAAAAA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAA
101264137 GTTTGAGTAG
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
60 30 0.37
61 45 0.55
62 7 0.09
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.42
Consensus pattern (62 bp):
TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATTCAAAAAATTTAACCCTCAATA
Found at i:101269160 original size:34 final size:34
Alignment explanation
Indices: 101269122--101269189 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
101269112 TACAATTCAA
101269122 TAAAACTCAAGTTCTTTCTTTGCAATTTGCCTTG
1 TAAAACTCAAGTTCTTTCTTTGCAATTTGCCTTG
101269156 TAAAACTCAAGTTCTTTCTTTGCAATTTGCCTTG
1 TAAAACTCAAGTTCTTTCTTTGCAATTTGCCTTG
101269190 CTTTTGTACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.44
Consensus pattern (34 bp):
TAAAACTCAAGTTCTTTCTTTGCAATTTGCCTTG
Found at i:101272138 original size:39 final size:39
Alignment explanation
Indices: 101272084--101272236 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
101272074 GAATGTTCGA
* *
101272084 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
101272123 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
101272162 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
101272201 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
101272237 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:101272252 original size:40 final size:39
Alignment explanation
Indices: 101272085--101272266 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
101272075 AATGTTCGAG
* * *
101272085 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
101272124 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
101272163 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
101272202 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
101272242 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
101272267 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:101280136 original size:18 final size:18
Alignment explanation
Indices: 101280113--101280148 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
101280103 TAATATATAT
*
101280113 TAACCCAAGTGCCCAACC
1 TAACCCAAGTACCCAACC
*
101280131 TAACCCAATTACCCAACC
1 TAACCCAAGTACCCAACC
101280149 CAATCATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.44, G:0.06, T:0.14
Consensus pattern (18 bp):
TAACCCAAGTACCCAACC
Found at i:101280190 original size:5 final size:6
Alignment explanation
Indices: 101280177--101280217 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
101280167 ATAATTTAAT
*
101280177 AAATAA AAATAA AAATTTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
101280218 AACATATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:101280205 original size:20 final size:21
Alignment explanation
Indices: 101280169--101280212 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
101280159 AATTACAAAT
101280169 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
*
101280190 AATTTAA-AACTAAAAATAAA
1 AATTTAATAAATAAAAATAAA
101280210 AAT
1 AAT
101280213 AAAAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:101280218 original size:20 final size:20
Alignment explanation
Indices: 101280180--101280218 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
101280170 ATTTAATAAA
**
101280180 TAAAAATAAAAATTTAAAAC
1 TAAAAATAAAAATAAAAAAC
101280200 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
101280219 ACATATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:101280306 original size:9 final size:9
Alignment explanation
Indices: 101280238--101280305 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
101280228 TTTATACAAA
101280238 TAATTCGGT
1 TAATTCGGT
101280247 TAATTCGGT
1 TAATTCGGT
* *
101280256 TAATTTGGG
1 TAATTCGGT
*
101280265 TAATTCGGG
1 TAATTCGGT
*
101280274 TAATTCAGT
1 TAATTCGGT
101280283 TAATTCGGT
1 TAATTCGGT
*
101280292 TAATTTGGT
1 TAATTCGGT
101280301 TAATT
1 TAATT
101280306 TTATACTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:101286563 original size:40 final size:40
Alignment explanation
Indices: 101286498--101286591 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
101286488 CCAACGTCGT
* * * *
101286498 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCTAC
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
* * *
101286536 CCATCCTTACACACCAAATATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
101286576 CCAACCCTACACACCA
1 CCAACCCTACACACCA
101286592 TAAAGTACCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 12 0.27
40 33 0.73
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
Found at i:101291152 original size:28 final size:28
Alignment explanation
Indices: 101291120--101291188 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
101291110 GCGTAGATCA
101291120 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
101291148 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
101291176 CGATA-TACCCCTA
1 CGAAATTACCCCTA
101291189 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:101293304 original size:25 final size:25
Alignment explanation
Indices: 101293267--101293374 Score: 87
Period size: 25 Copynumber: 4.3 Consensus size: 25
101293257 ACAGCTTTCT
* *
101293267 TGAGCTTCTCGATACTTGACTCTCA
1 TGAGCTTCCCGATACTTGACTCGCA
* *
101293292 TGAGCTTCCCGATATTTGGCTCGCA
1 TGAGCTTCCCGATACTTGACTCGCA
* ** *
101293317 AGAGCTTCCCGATA-TACAGCTCGTA
1 TGAGCTTCCCGATACTTGA-CTCGCA
*
101293342 TGAGCTTCCC-ATTACTT-AGCTCACA
1 TGAGCTTCCCGA-TACTTGA-CTCGCA
101293367 TGAGCTTC
1 TGAGCTTC
101293375 TCATTATATG
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
24 2 0.03
25 64 0.96
26 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (25 bp):
TGAGCTTCCCGATACTTGACTCGCA
Found at i:101294443 original size:30 final size:30
Alignment explanation
Indices: 101294409--101294482 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
101294399 ATGTGTCTTA
*
101294409 GCCGTGTGTGACACATGGCTAGATGACATG
1 GCCGTGTGTGACACATGGCCAGATGACATG
*
101294439 GCCGTGTGTGACACATGGCCAGGTGACATG
1 GCCGTGTGTGACACATGGCCAGATGACATG
* *
101294469 GCCATGTGTAACAC
1 GCCGTGTGTGACAC
101294483 CACTTGCCCG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (30 bp):
GCCGTGTGTGACACATGGCCAGATGACATG
Found at i:101295830 original size:53 final size:53
Alignment explanation
Indices: 101295745--101295951 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
101295735 TTCCTTTTTA
* * * *
101295745 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
101295798 AACTTACCATTGCCATGCCTTGGCATGTTCTTACATGGAATCTTTGCCTTATA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * ** * * *
101295851 ATAGTTTATCAATGCCATGTTTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 A-A-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* * * *
101295907 AACTTACCAATGGCATGCCTTGGCGTGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
101295952 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 46 0.38
54 34 0.28
55 39 0.32
56 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.39
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:101298821 original size:28 final size:28
Alignment explanation
Indices: 101298760--101298817 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
101298750 TTTTTTAAGT
101298760 TATATCATTATTATTTTAAAACCTTCTTA
1 TATATCATTATTATTTTAAAA-CTTCTTA
101298789 TATATCA-TATTATTTTAAAA-TT-TTA
1 TATATCATTATTATTTTAAAACTTCTTA
101298814 TATA
1 TATA
101298818 ATATTTCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.24
26 2 0.07
28 13 0.45
29 7 0.24
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (28 bp):
TATATCATTATTATTTTAAAACTTCTTA
Found at i:101298949 original size:26 final size:27
Alignment explanation
Indices: 101298910--101298976 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
101298900 ATCCCTTGTT
*
101298910 ATTT-TTTATATATAATTT-CTTTTAA
1 ATTTATTTATATATAATTTCCTTTCAA
101298935 ATTTATTTATATAT-ATTTCCTTTCAA
1 ATTTATTTATATATAATTTCCTTTCAA
* *
101298961 ATCTATTATGTATATA
1 ATTTATT-TATATATA
101298977 GTTTATTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 8 0.23
26 21 0.60
27 6 0.17
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.58
Consensus pattern (27 bp):
ATTTATTTATATATAATTTCCTTTCAA
Found at i:101302563 original size:10 final size:9
Alignment explanation
Indices: 101302545--101302611 Score: 53
Period size: 9 Copynumber: 7.1 Consensus size: 9
101302535 CAGTATTTGA
*
101302545 TTAAATTTT
1 TTAATTTTT
*
101302554 TTAATGTTT
1 TTAATTTTT
*
101302563 TTAATATTT
1 TTAATTTTT
* *
101302572 TCAATAATTT
1 TTAAT-TTTT
*
101302582 TTATTTATTT
1 TTAATT-TTT
101302592 TTAATATTTT
1 TTAAT-TTTT
101302602 TTAATTTTT
1 TTAATTTTT
101302611 T
1 T
101302612 AAAATAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
9 24 0.51
10 22 0.47
11 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.69
Consensus pattern (9 bp):
TTAATTTTT
Found at i:101302580 original size:29 final size:27
Alignment explanation
Indices: 101302548--101302651 Score: 77
Period size: 33 Copynumber: 3.6 Consensus size: 27
101302538 TATTTGATTA
*
101302548 AATTTTTTAATGTTTTTAATATTTTCAAT
1 AATTTTTTAATATTTTTAATATTTT--AT
* *
101302577 AA-TTTTTATTTATTTTTAATATTTTTT
1 AATTTTTTA-ATATTTTTAATATTTTAT
*
101302604 AATTTTTTAAAATAAATTTTTAAAATATTTTTT
1 AATTTTTT--AAT--ATTTTT--AATATTTTAT
101302637 AATTTTTTAA-ATTTT
1 AATTTTTTAATATTTT
101302652 AAAAATTAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
27 3 0.05
28 16 0.25
29 17 0.27
30 1 0.02
31 8 0.13
33 18 0.29
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (27 bp):
AATTTTTTAATATTTTTAATATTTTAT
Found at i:101302627 original size:8 final size:9
Alignment explanation
Indices: 101302551--101302613 Score: 65
Period size: 10 Copynumber: 6.8 Consensus size: 9
101302541 TTGATTAAAT
*
101302551 TTTTTAATG
1 TTTTTAATA
101302560 TTTTTAATA
1 TTTTTAATA
*
101302569 TTTTCAATAA
1 TTTTTAAT-A
*
101302579 TTTTTATTTA
1 TTTTTA-ATA
101302589 TTTTTAATA
1 TTTTTAATA
101302598 TTTTTTAAT-
1 -TTTTTAATA
101302607 TTTTTAA
1 TTTTTAA
101302614 AATAAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
8 7 0.15
9 17 0.37
10 21 0.46
11 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTTAATA
Found at i:101302636 original size:13 final size:13
Alignment explanation
Indices: 101302603--101302638 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
101302593 TAATATTTTT
101302603 TAATTTTTTAAAA
1 TAATTTTTTAAAA
*
101302616 TAAATTTTTAAAA
1 TAATTTTTTAAAA
101302629 T-ATTTTTTAA
1 TAATTTTTTAA
101302639 TTTTTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATTTTTTAAAA
Found at i:101302642 original size:41 final size:39
Alignment explanation
Indices: 101302549--101302662 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 39
101302539 ATTTGATTAA
* * **
101302549 ATTTTTTAATGTTTTTAATATTTT-CAATAATTTTTATTT
1 ATTTTTTAAT-TTTTTAATTTTTTAAAATAATTTTTAAAT
*
101302588 ATTTTTAATATTTTTTAATTTTTTAAAATAAATTTTTAAAAT
1 ATTTTTTA-ATTTTTTAATTTTTTAAAAT-AATTTTT-AAAT
* *
101302630 ATTTTTTAATTTTTTAAATTTTAAAAATTAATT
1 ATTTTTTAATTTTTTAATTTTTTAAAA-TAATT
101302663 AAAATGCTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
39 19 0.31
40 5 0.08
41 28 0.45
42 10 0.16
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (39 bp):
ATTTTTTAATTTTTTAATTTTTTAAAATAATTTTTAAAT
Found at i:101303117 original size:12 final size:13
Alignment explanation
Indices: 101303102--101303162 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
101303092 TTGACAATGC
101303102 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
*
101303115 TTTTAAAAAGTG-
1 TTTTGAAAAGTGT
* * *
101303127 TTGTGAAAAAATAT
1 TTTTG-AAAAGTGT
*
101303141 TTTTGAGAAGTGT
1 TTTTGAAAAGTGT
101303154 TTTTGAAAA
1 TTTTGAAAA
101303163 ATTTAAGTGT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
12 3 0.08
13 29 0.81
14 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.43
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:101303764 original size:3 final size:3
Alignment explanation
Indices: 101303756--101303794 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
101303746 TGATTCACCG
* * *
101303756 TCA TCA TCA CCA TCA TCA TCG TCG TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
101303795 CTTTCTCGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.36, G:0.05, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:101305329 original size:72 final size:72
Alignment explanation
Indices: 101305185--101305422 Score: 358
Period size: 72 Copynumber: 3.3 Consensus size: 72
101305175 AAAATCATAT
**
101305185 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAA-TCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
101305247 TACCAAAC
65 AACCAAAC
*
101305255 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
101305320 ACCAAAC
66 ACCAAAC
* *
101305327 ATAAACAACCATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAAGTT-AATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAA-TTCAATATCCAAA
101305391 AACCAAAC
65 AACCAAAC
* *
101305399 ATAAATAACTATTGGTAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
101305423 TTTAGCATTT
Statistics
Matches: 155, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
70 25 0.16
71 21 0.14
72 107 0.69
73 2 0.01
ACGTcount: A:0.55, C:0.15, G:0.07, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:101313825 original size:77 final size:77
Alignment explanation
Indices: 101313693--101313847 Score: 274
Period size: 77 Copynumber: 2.0 Consensus size: 77
101313683 TTCCAGAGAG
* *
101313693 TCTATATCTTGTTCACTAAAGTTTTATACCCTGTGGATTTGCCAAGGAGATCAACAATAACACAT
1 TCTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACAT
101313758 TACTCCATGCTT
66 TACTCCATGCTT
* *
101313770 TCTATATCTTGTTCACTAAGGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATATCACAT
1 TCTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACAT
101313835 TACTCCATGCTT
66 TACTCCATGCTT
101313847 T
1 T
101313848 AGTCTAACAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (77 bp):
TCTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACAT
TACTCCATGCTT
Found at i:101315335 original size:15 final size:16
Alignment explanation
Indices: 101315300--101315338 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
101315290 TGTATATGAT
*
101315300 ATTATTTCTAATTTAA
1 ATTATTTTTAATTTAA
*
101315316 TTTATTTTTAA-TTAA
1 ATTATTTTTAATTTAA
101315331 ATTATTTT
1 ATTATTTT
101315339 AAAATAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTATTTTTAATTTAA
Found at i:101315480 original size:33 final size:31
Alignment explanation
Indices: 101315414--101315495 Score: 89
Period size: 33 Copynumber: 2.6 Consensus size: 31
101315404 AAAATGCTGT
*
101315414 AATCA-AAAAA-TAAAAAAAAAACTGATAAA
1 AATCATAAAAATTAAAAAAAAAACTGACAAA
**
101315443 AATCATAAAAATTGAAAATAAAAAACTGACACC
1 AATCATAAAAATT-AAAA-AAAAAACTGACAAA
101315476 AATCATTAAAAA-TAAAAAAA
1 AATCA-TAAAAATTAAAAAAA
101315496 TATAAAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 5 0.11
30 5 0.11
31 4 0.09
32 8 0.18
33 17 0.38
34 6 0.13
ACGTcount: A:0.70, C:0.10, G:0.04, T:0.17
Consensus pattern (31 bp):
AATCATAAAAATTAAAAAAAAAACTGACAAA
Found at i:101327061 original size:18 final size:19
Alignment explanation
Indices: 101327038--101327073 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
101327028 ATATTTTATT
*
101327038 TTATTAC-ACTTTAAAACG
1 TTATTACTACTTAAAAACG
101327056 TTATTACTACTTAAAAAC
1 TTATTACTACTTAAAAAC
101327074 ATATTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.39
Consensus pattern (19 bp):
TTATTACTACTTAAAAACG
Found at i:101327863 original size:31 final size:30
Alignment explanation
Indices: 101327813--101327878 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 30
101327803 TTTTTTAGTA
101327813 AAATTTGACCCAAACCTTTTAAAAAGAGTC
1 AAATTTGACCCAAACCTTTTAAAAAGAGTC
*
101327843 AAATTTGA-CCATTAACCTTTTAAAAAGAGTT
1 AAATTTGACCCA--AACCTTTTAAAAAGAGTC
101327874 AAATT
1 AAATT
101327879 ATTTTTTAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 3 0.09
30 8 0.24
31 22 0.67
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (30 bp):
AAATTTGACCCAAACCTTTTAAAAAGAGTC
Found at i:101335677 original size:2 final size:2
Alignment explanation
Indices: 101335670--101335696 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
101335660 TTCCCCAAGG
101335670 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
101335697 TTCAAAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:101347748 original size:26 final size:26
Alignment explanation
Indices: 101347636--101347836 Score: 85
Period size: 26 Copynumber: 7.8 Consensus size: 26
101347626 CTTTAATATT
* * **
101347636 TTTATATATTATGTATCTTAAATCCC
1 TTTATATATTATTTATTTTAAATTGC
* * *
101347662 TTTTTACATTATCTATTTTAAA-T-C
1 TTTATATATTATTTATTTTAAATTGC
* * *
101347686 GTT-TATA-TA-TTATCTTAAA-TGA
1 TTTATATATTATTTATTTTAAATTGC
* *
101347708 TTTCATAAATGATTTATTTTAAATTGC
1 TTT-ATATATTATTTATTTTAAATTGC
* **
101347735 TTTATATATTATTTCATTTTGAATTAT
1 TTTATATATTATTT-ATTTTAAATTGC
* * * * *
101347762 TTTGTATACTAATTTGTTTTCAATT-A
1 TTTATATA-TTATTTATTTTAAATTGC
* *
101347788 TTT-TATATGATTTACTTTAAATTGC
1 TTTATATATTATTTATTTTAAATTGC
101347813 TTTTATAGTATCTATTCTATTTTA
1 -TTTATA-TAT-TATT-TATTTTA
101347837 TTTCTATCAT
Statistics
Matches: 129, Mismatches: 32, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
21 9 0.07
22 4 0.03
23 3 0.02
24 18 0.14
25 5 0.04
26 42 0.33
27 31 0.24
28 8 0.06
29 3 0.02
30 6 0.05
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.56
Consensus pattern (26 bp):
TTTATATATTATTTATTTTAAATTGC
Found at i:101347769 original size:27 final size:27
Alignment explanation
Indices: 101347719--101347791 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
101347709 TTCATAAATG
* ** * *
101347719 ATTTATTTTAAATTGCTTTATATA-TT
1 ATTTATTTTCAATTATTTTGTATACTA
*
101347745 ATTTCATTTTGAATTATTTTGTATACTA
1 ATTT-ATTTTCAATTATTTTGTATACTA
*
101347773 ATTTGTTTTCAATTATTTT
1 ATTTATTTTCAATTATTTT
101347792 ATATGATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.11
27 29 0.76
28 5 0.13
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (27 bp):
ATTTATTTTCAATTATTTTGTATACTA
Found at i:101347877 original size:22 final size:23
Alignment explanation
Indices: 101347845--101347887 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
101347835 TATTTCTATC
*
101347845 ATTTTAGAATTTTTTTATATTTT
1 ATTTTAGAATTGTTTTATATTTT
101347868 ATTTTA-AATTGTTTTATATT
1 ATTTTAGAATTGTTTTATATT
101347888 ATTTATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (23 bp):
ATTTTAGAATTGTTTTATATTTT
Found at i:101351596 original size:19 final size:20
Alignment explanation
Indices: 101351569--101351611 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
101351559 CTTTTTTGCA
* *
101351569 TTCATTCATTTGCACTACAT
1 TTCATTCATATGCACTAAAT
*
101351589 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCACTAAAT
101351608 TTCA
1 TTCA
101351612 CAAAAAGACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (20 bp):
TTCATTCATATGCACTAAAT
Found at i:101359735 original size:44 final size:45
Alignment explanation
Indices: 101359624--101360096 Score: 322
Period size: 44 Copynumber: 10.6 Consensus size: 45
101359614 AAATCATAAG
* * ** *
101359624 TCTTATCTCCCTGAAGTTGCAGGGGAGCA-GACTGAAGATAATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-GAAGATAGCAAA
* *
101359669 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTCGAAGTTA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * * * * * * *
101359713 CCTCATCTCCTTGAAGTTGCAGTAGAGTAGGT-TAAAATAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * * * *
101359757 TCTTATCTCTCC-GAAGTTGCTGTGCAGCA-GACTGAAGATAGTAGA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGGTC-GAAGATAGCAAA
* * *
101359802 TCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * * * * *
101359846 CCTCATCTCCCTGAAGTTGCGGTGGAGCAGGT-TAAAATAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * * * * *
101359890 TCTTATCTCCCCGAAGTTGCGGTGAAGCA-GACTGAAGATAGTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTC-GAAGATAGCAAA
* * * * * * *
101359935 TCTTATTTCCCAGAAGTTGCAGTAGAGCAGATCAAAGTTA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * * * *
101359979 CCTTATCTCTCTGAAGTTGCGGTGGAGCAAGTTGAAGATA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
* * ***
101360023 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGAAT-GAAGATAATGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTCGAAGATAGCAAA
* *
101360068 TCTCATC-CCACTGGAGTTGCAGTGGAGCA
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCA
101360097 TATTGAAGCT
Statistics
Matches: 326, Mismatches: 88, Indels: 28
0.74 0.20 0.06
Matches are distributed among these distances:
43 10 0.03
44 180 0.55
45 132 0.40
46 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTCGAAGATAGCAAA
Found at i:101359861 original size:133 final size:133
Alignment explanation
Indices: 101359621--101360096 Score: 611
Period size: 133 Copynumber: 3.6 Consensus size: 133
101359611 TACAAATCAT
* * *
101359621 AAGTCTTATCTCCCTGAAGTTGCAGGGGAGCAGACTGAAGATAATAGATCTTATCTCTCTGAAGT
1 AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAATAGATCTTATCTCCCTGAAGT
* * * *
101359686 TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCTTGAAGTTGCAGTAGAGTAGGTTAAAAT
66 TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAAT
101359751 AGC
131 AGC
* *
101359754 AAGTCTTATCTCTCC-GAAGTTGCTGTGCAGCAGACTGAAGATAGTAGATCTTATCTCCCTGAAG
1 AAGTCTTATCTC-CCTGAAGTTGCTGTGGAGCAGACTGAAGATAATAGATCTTATCTCCCTGAAG
* *
101359818 TTGCAGTGGAACAGGTTGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAA
65 TTGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAA
101359883 TAGC
130 TAGC
* * * * * *
101359887 AAGTCTTATCTCCCCGAAGTTGCGGTGAAGCAGACTGAAGATAGTAGATCTTATTTCCCAGAAGT
1 AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAATAGATCTTATCTCCCTGAAGT
* * * * * * * *
101359952 TGCAGTAGAGCAGATCAAAGTTACAGACCTTATCTCTCTGAAGTTGCGGTGGAGCAAGTTGAAGA
66 TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTT-AAAA
101360017 TA-C
130 TAGC
* * * *
101360020 AAATCTTATCTCCCTGAAGTTG-TAGTGGAGCAGAATGAAGATAAT-GAATCTCATC-CCACTGG
1 AAGTCTTATCTCCCTGAAGTTGCT-GTGGAGCAGACTGAAGATAATAG-ATCTTATCTCC-CTGA
101360082 AGTTGCAGTGGAGCA
63 AGTTGCAGTGGAGCA
101360097 TATTGAAGCT
Statistics
Matches: 301, Mismatches: 36, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
132 5 0.02
133 289 0.96
134 7 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (133 bp):
AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAATAGATCTTATCTCCCTGAAGT
TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAAT
AGC
Found at i:101359995 original size:89 final size:88
Alignment explanation
Indices: 101359625--101360053 Score: 225
Period size: 89 Copynumber: 4.8 Consensus size: 88
101359615 AATCATAAGT
* * * *
101359625 CTTATCTCCCTGAAGTTGCAGG-GGAGC-AGACTGAAGATA-ATAGATCTTATCTCTCTGAAGTT
1 CTTATCTCCCCGAAGTTGC-GGTGAAGCAAG-CTGAAGATACA-A-ATCTTATCTCCCAGAAGTT
* * * *
101359687 GCAGTGGAGCAGGTCGAAGTTACAAAC
62 GCAGTAGAGCAGATCAAAGTTACAGAC
* ** * * * * * *
101359714 CTCATCTCCTTGAAGTTGCAGT-AGAG-TAGGTTAAAATAGCAAGTCTTATCTCTCC-GAAGTTG
1 CTTATCTCCCCGAAGTTGCGGTGA-AGCAAGCTGAAGATA-CAAATCTTATCTC-CCAGAAGTTG
* * * * *
101359776 CTGT-GCAGCAGA-CTGAAGATAGTAGAT
63 CAGTAG-AGCAGATC-AAAGTTA-CAGAC
* * * * * * * * *
101359803 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGGTTGAAGTTACAAACCTCATCTCCCTGAAGTTGCG
1 CTTATCTCCCCGAAGTTGCGGT-GAAGCAAGCTGAAGATACAAATCTTATCTCCCAGAAGTTGCA
* * * * *
101359867 GTGGAGCAGGTTAAA-ATAGCA-AGT
65 GTAGAGCAGATCAAAGTTA-CAGA-C
* * *
101359891 CTTATCTCCCCGAAGTTGCGGTGAAGC-AGACTGAAGATAGTAGATCTTATTTCCCAGAAGTTGC
1 CTTATCTCCCCGAAGTTGCGGTGAAGCAAG-CTGAAGATA-CAAATCTTATCTCCCAGAAGTTGC
101359955 AGTAGAGCAGATCAAAGTTACAGAC
64 AGTAGAGCAGATCAAAGTTACAGAC
* * * * * *
101359980 CTTATCTCTCTGAAGTTGCGGTGGAGCAAGTTGAAGATACAAATCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCCGAAGTTGCGGTGAAGCAAGCTGAAGATACAAATCTTATCTCCCAGAAGTTGCAG
*
101360045 TGGAGCAGA
66 TAGAGCAGA
101360054 ATGAAGATAA
Statistics
Matches: 260, Mismatches: 58, Indels: 45
0.72 0.16 0.12
Matches are distributed among these distances:
87 7 0.03
88 102 0.39
89 136 0.52
90 14 0.05
91 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (88 bp):
CTTATCTCCCCGAAGTTGCGGTGAAGCAAGCTGAAGATACAAATCTTATCTCCCAGAAGTTGCAG
TAGAGCAGATCAAAGTTACAGAC
Found at i:101361073 original size:2 final size:2
Alignment explanation
Indices: 101361066--101361097 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
101361056 GAACATTCAA
101361066 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101361098 TAGTTTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101361738 original size:22 final size:21
Alignment explanation
Indices: 101361691--101361738 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
101361681 TTACATTATC
*
101361691 TATTTTAAATCGTTTATATAT
1 TATTTTAAATCGTTTATAAAT
101361712 TATTTTAAAT-GATTTCATAAAT
1 TATTTTAAATCG-TTT-ATAAAT
101361734 TATTT
1 TATTT
101361739 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 10 0.42
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
TATTTTAAATCGTTTATAAAT
Found at i:101361785 original size:27 final size:26
Alignment explanation
Indices: 101361652--101361851 Score: 83
Period size: 26 Copynumber: 7.7 Consensus size: 26
101361642 CTTTAATATT
* * ***
101361652 TTTATATATTATGTATCTTAAACCCC
1 TTTATATATTATTTATTTTAAATTAC
* * *
101361678 TTTTTACATTATCTATTTTAAA-T-C
1 TTTATATATTATTTATTTTAAATTAC
* *
101361702 GTT-TATA-TA-TTATTTTAAATGA-
1 TTTATATATTATTTATTTTAAATTAC
*
101361724 TTTCATAAATTATTTATTTTAAATTAC
1 TTT-ATATATTATTTATTTTAAATTAC
* **
101361751 TTTATATATTATTTCATTTTGAATTGT
1 TTTATATATTATTT-ATTTTAAATTAC
* * * * *
101361778 TTTGTATACTAATTTGTTTTCAATCA-
1 TTTATATA-TTATTTATTTTAAATTAC
* * *
101361804 TTT-TATATGATTTACTTTAAATTTC
1 TTTATATATTATTTATTTTAAATTAC
101361829 TTTTATAGTATCTATTCTATTTT
1 -TTTATA-TAT-TATT-TATTTT
101361852 CTTTCTATCA
Statistics
Matches: 129, Mismatches: 30, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
21 9 0.07
22 4 0.03
23 3 0.02
24 17 0.13
25 6 0.05
26 46 0.36
27 28 0.22
28 8 0.06
29 3 0.02
30 5 0.04
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTATATATTATTTATTTTAAATTAC
Found at i:101361888 original size:24 final size:25
Alignment explanation
Indices: 101361861--101361914 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
101361851 TCTTTCTATC
101361861 ATTTTAGAAATT-TTTCTATA-T-TTT
1 ATTTTA-AAATTGTTT-TATATTATTT
101361885 ATTTT-AAATTGTTTTATATTATTT
1 ATTTTAAAATTGTTTTATATTATTT
101361909 ATTTTA
1 ATTTTA
101361915 CTTCTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 9 0.35
23 4 0.15
24 13 0.50
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (25 bp):
ATTTTAAAATTGTTTTATATTATTT
Found at i:101364314 original size:10 final size:10
Alignment explanation
Indices: 101364299--101364324 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
101364289 CAATAAGTAA
101364299 TTTTTTTTAT
1 TTTTTTTTAT
101364309 TTTTTTTTAT
1 TTTTTTTTAT
101364319 TTTTTT
1 TTTTTT
101364325 GCTAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:101364630 original size:3 final size:3
Alignment explanation
Indices: 101364622--101364667 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
101364612 GCAATAACTT
101364622 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
101364668 TAAAAAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:101369076 original size:19 final size:18
Alignment explanation
Indices: 101369052--101369087 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
101369042 TAATAAATTA
*
101369052 TTTAATATTATAATTTTAT
1 TTTAATAATA-AATTTTAT
101369071 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
101369088 AAAATCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:101373562 original size:21 final size:22
Alignment explanation
Indices: 101373529--101373571 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
101373519 ATAAAAGCTT
*
101373529 CAAAAATATTAAT-TTTGTTAAA
1 CAAAAATAATAATATTT-TTAAA
101373551 CAAAAA-AATAATATTTTTAAA
1 CAAAAATAATAATATTTTTAAA
101373572 GGGATAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (22 bp):
CAAAAATAATAATATTTTTAAA
Found at i:101373874 original size:26 final size:26
Alignment explanation
Indices: 101373838--101373888 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
101373828 TGTACTGGAT
101373838 ATATAATTCCTTCGAAGTGATGAACA
1 ATATAATTCCTTCGAAGTGATGAACA
101373864 ATATAATTCCTTCGAAGTGATGAAC
1 ATATAATTCCTTCGAAGTGATGAAC
101373889 TTGAGTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (26 bp):
ATATAATTCCTTCGAAGTGATGAACA
Found at i:101377503 original size:49 final size:49
Alignment explanation
Indices: 101377431--101377660 Score: 289
Period size: 49 Copynumber: 4.6 Consensus size: 49
101377421 AGTACGCATT
* * * *
101377431 GTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACTTA
1 GTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGGTACACGTA
* * *
101377480 GTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACC-AACTATCTGGTACACGTA
* * * * *
101377530 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATA
1 GTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CTATCTGGTACACGTA
* * * *
101377581 GTAGCCTGCACTTAGTACTACGCATGCGACCAACAATCTGGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGGTACACGTA
101377630 GTAGCCTGCACTTAGTACTACACACGTGACC
1 GTAGCCTGCACTTAGTACTACACACGTGACC
101377661 TCACAATAGC
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 69 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
GTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGGTACACGTA
Found at i:101377654 original size:100 final size:99
Alignment explanation
Indices: 101377431--101377660 Score: 336
Period size: 100 Copynumber: 2.3 Consensus size: 99
101377421 AGTACGCATT
* * *
101377431 GTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACTTAGTAGCCTGCACTTAGT
1 GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGT
* * *
101377496 ACTACACACGTGACCTAACCATTTGATACACGTA
66 ACTACACACGCGACCTAACAATCTGATACACGTA
* *
101377530 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTA
1 GTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACTTA
* * *
101377595 GTACTACGCATGCGACC-AACAATCTGGTACACGTA
64 GTACTACACACGCGACCTAACAATCTGATACACGTA
101377630 GTAGCCTGCACTTAGTACTACACACGTGACC
1 GTAGCCTGCACTTAGTACTACACACGTGACC
101377661 TCACAATAGC
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
99 29 0.25
100 47 0.40
101 41 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGT
ACTACACACGCGACCTAACAATCTGATACACGTA
Found at i:101380550 original size:20 final size:20
Alignment explanation
Indices: 101380513--101380550 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101380503 TGATGGGGAG
*
101380513 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
101380533 CAAGAA-ATCAAAGCTGGA
1 CAAGAATATC-AAGCTGGA
101380551 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:101382562 original size:46 final size:46
Alignment explanation
Indices: 101382495--101382706 Score: 277
Period size: 46 Copynumber: 4.6 Consensus size: 46
101382485 AACCTGTGTG
* *
101382495 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* *
101382541 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGT-
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* * * *
101382586 GAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
*
101382632 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG-A
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGTA
* * *
101382677 GTAAGACCATAGTTGAAAGACACTATGGCA
1 -TAAGACCATGGTTGAAAGATACCATGGCA
101382707 TCACGTCAAA
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
45 41 0.27
46 110 0.73
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
Found at i:101382651 original size:91 final size:92
Alignment explanation
Indices: 101382491--101382706 Score: 301
Period size: 91 Copynumber: 2.4 Consensus size: 92
101382481 TGGCAACCTG
* * * *
101382491 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTATAAGACCATGGTTGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGA
* * *
101382556 AAGATACCATGGCAACCTGATATG-AGA
66 AAGATACCATGGCAACATGACA-GAAAA
*
101382583 TGTG-AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGA
101382647 AAGATACCATGGCAACATGACAGAAAA
66 AAGATACCATGGCAACATGACAGAAAA
* * * *
101382674 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
101382707 TCACGTCAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
90 1 0.01
91 80 0.73
92 29 0.26
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (92 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGA
AAGATACCATGGCAACATGACAGAAAA
Found at i:101382682 original size:137 final size:130
Alignment explanation
Indices: 101382442--101382706 Score: 338
Period size: 137 Copynumber: 2.0 Consensus size: 130
101382432 AGTGTGCTCT
*
101382442 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * * *
101382507 TGAAAGATACCATGGCAACCTGATATGAGATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATGTATAAGACCATAGTTGAAAGACACCATGGCAAC
* *
101382572 CTGATATGAGATGTG-AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
101382636 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG-AGTAAGACCATAGTTGAAAGACA
58 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGTA-TAAGACCATAGTTGAAAGACA
*
101382699 CTATGGCA
121 CCATGGCA
101382707 TCACGTCAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
129 32 0.28
130 14 0.12
132 2 0.02
135 1 0.01
136 2 0.02
137 65 0.56
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGACATGAAATGTATAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:101385896 original size:20 final size:20
Alignment explanation
Indices: 101385859--101385896 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101385849 TGATGGGGAG
*
101385859 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
101385879 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
101385897 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Done.