Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 335 of 378
Found at i:101718821 original size:54 final size:54
Alignment explanation
Indices: 101718762--101719040 Score: 353
Period size: 54 Copynumber: 5.2 Consensus size: 54
101718752 GGGGTATTTT
* * ** * * *
101718762 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * * * *
101718816 AGTAATTCTGTAAATCAAGAGAAAAT-AGTAATTCTATAAATCGACGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * *
101718869 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
*
101718923 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
*
101718977 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
101719031 GGTAATTTTA
1 GGTAATTTTA
101719041 CAAGTCAAGG
Statistics
Matches: 196, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 41 0.21
54 155 0.79
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:101718970 original size:81 final size:80
Alignment explanation
Indices: 101718790--101719039 Score: 358
Period size: 81 Copynumber: 3.1 Consensus size: 80
101718780 GGGTATTTCT
* * * *
101718790 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAG-AAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
*
101718854 AATCGACGGTAAAAC
66 AATCGAGGGTAAAAC
* *
101718869 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTAT
1 G-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTAT
101718934 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * * * *
101718950 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGT
1 -GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTAT
101719015 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
101719031 GGTAATTTT
1 -GTAATTTT
101719040 ACAAGTCAAG
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
79 1 0.01
80 43 0.28
81 107 0.70
82 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (80 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAAC
Found at i:101719087 original size:27 final size:27
Alignment explanation
Indices: 101718763--101719093 Score: 265
Period size: 27 Copynumber: 12.3 Consensus size: 27
101718753 GGGTATTTTG
* * ** *
101718763 GTAATTTTACAAATTGAGGGTATTTCT
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101718790 GTAATTTTGTAAATCGAGGGTAAAAT-A
1 GTAATTTTATAAATCGAGGGT-AAATCA
* * * * *
101718817 GTAATTCTGTAAATCAAGAGAAAAT-A
1 GTAATTTTATAAATCGAGGGTAAATCA
* * *
101718843 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAATCA
* *
101718869 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAATCA
* * * *
101718897 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101718924 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAATCA
* * * *
101718951 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101718978 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAATCA
* * * *
101719005 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAATCA
* * * **
101719032 GTAATTTTACAAGTC-AAGGTATTTCA
1 GTAATTTTATAAATCGAGGGTAAATCA
* **
101719058 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101719085 GTATTTTTA
1 GTAATTTTA
101719094 CAAACTAAGG
Statistics
Matches: 252, Mismatches: 47, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 45 0.18
27 204 0.81
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAATCA
Found at i:101719094 original size:27 final size:26
Alignment explanation
Indices: 101719032--101719120 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
101719022 GGGTAAAACG
* *
101719032 GTAATTTTACAAGTCAAGGTATTTCA
1 GTAATTTTACAAATCAGGGTATTTCA
101719058 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATC-AGGGTATTTCA
* * *
101719085 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAA-TCAGGGTATTTCA
101719112 GTAATTTTA
1 GTAATTTTA
101719121 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 14 0.25
27 40 0.73
28 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAATCAGGGTATTTCA
Found at i:101719134 original size:27 final size:27
Alignment explanation
Indices: 101719032--101719135 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
101719022 GGGTAAAACG
*
101719032 GTAATTTTAC-AAGTCAAG-GTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* *
101719058 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
101719085 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
101719112 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
101719136 CTAAACATGG
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
26 14 0.21
27 45 0.67
28 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:101722793 original size:27 final size:28
Alignment explanation
Indices: 101722731--101722794 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
101722721 CAGTCACTTG
*
101722731 CCCACAAGGGCAAAATAGTCATTTAACA
1 CCCACAAGGGCAAAATAGTAATTTAACA
* * *
101722759 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAATAGTAATTTAACA
101722785 CCCACAAGGG
1 CCCACAAGGG
101722795 TATTTCAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTAATTTAACA
Found at i:101722805 original size:27 final size:27
Alignment explanation
Indices: 101722775--101722836 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
101722765 GGGCAAAATG
101722775 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
101722802 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
101722829 GTAATTTT
1 GTAATTTT
101722837 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:101722930 original size:27 final size:27
Alignment explanation
Indices: 101722910--101723201 Score: 325
Period size: 27 Copynumber: 10.8 Consensus size: 27
101722900 GGGTATTTCT
*
101722910 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
101722937 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
101722964 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
101722990 GATAATTTTGTAAATCAAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
101723018 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
101723045 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
101723072 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
101723099 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
101723126 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
** * * ***
101723153 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTGTAAATCGAGGGTAAAACA
**
101723180 GTAATTTTACAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
101723202 TTTCAGTATT
Statistics
Matches: 225, Mismatches: 38, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 223 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:101723202 original size:27 final size:27
Alignment explanation
Indices: 101722883--101723215 Score: 258
Period size: 27 Copynumber: 12.3 Consensus size: 27
101722873 GGGTATTTTG
* * ** *
101722883 GTAATTTTACAAATTGAGGGTATTTCT
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101722910 GTAATTTTGTAAATCGAGGGTAAAAT-A
1 GTAATTTTATAAATCGAGGGT-AAATCA
* * * **
101722937 GTAATTCTGTAAATCAAGAGAAAAAT-A
1 GTAATTTTATAAATCGAG-GGTAAATCA
* * *
101722964 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAATCA
* * *
101722990 GATAATTTTGTAAATCAAGGGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAATCA
* * * * *
101723018 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101723045 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAATCA
* * * *
101723072 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101723099 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAATCA
* * *
101723126 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAATCA
* * * **
101723153 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTATAAATCGAGGGTAAATCA
* **
101723180 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTAAATCA
*
101723207 GTATTTTTA
1 GTAATTTTA
101723216 CAAACTAAGG
Statistics
Matches: 256, Mismatches: 45, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
26 5 0.02
27 247 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAATCA
Found at i:101723216 original size:27 final size:27
Alignment explanation
Indices: 101722791--101723242 Score: 146
Period size: 27 Copynumber: 16.7 Consensus size: 27
101722781 TTACCCCACA
**
101722791 AGGGTATTTCAGTAATTTTAC-CCTAC-
1 AGGGTATTTCAGTAATTTTACAAAT-CG
* * *
101722817 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 A-GGGTATTTCAGTAATTTTACAAATCG
** *
101722844 ATGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCAGTAATTTTACAAATCG
** *
101722871 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAATCG
* **
101722899 AGGGTATTTCTGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * ** *
101722926 AGGGTAAAAT-AGTAATTCTGTAAATCA
1 AGGGT-ATTTCAGTAATTTTACAAATCG
** ** * *
101722953 AGAGAAAAAT-AGTAATTCTATAAATCG
1 AG-GGTATTTCAGTAATTTTACAAATCG
* *** ** *
101722980 ACGGTAAAAC-GATAATTTTGTAAATCA
1 AGGGTATTTCAG-TAATTTTACAAATCG
*** * ** *
101723007 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * *
101723034 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * **
101723061 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * *
101723088 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * **
101723115 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** *
101723142 AGGGTAAAACAGTAATTTTACAAGTCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
101723169 AAGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
101723196 AGGGTATTTCAGTATTTTTACAAA-CTA
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
101723223 AGGGTATTTCGGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
101723243 GTAAACTAAA
Statistics
Matches: 355, Mismatches: 61, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.02
27 342 0.96
28 5 0.01
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:101723256 original size:27 final size:27
Alignment explanation
Indices: 101723151--101723257 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 27
101723141 GAGGGTAAAA
* *
101723151 CAGTAATTTTACAAGTCGAAG-GTATTT
1 CAGTAATTTTACAA-ACTAAGAGTATTT
* *
101723178 CAGTAATTTTACAAA-TCGAGGGTATTT
1 CAGTAATTTTACAAACT-AAGAGTATTT
* *
101723205 CAGTATTTTTACAAACTAAGGGTATTT
1 CAGTAATTTTACAAACTAAGAGTATTT
* *
101723232 CGGTAATTTTAGTAAACTAA-AGTATT
1 CAGTAATTTTA-CAAACTAAGAGTATT
101723258 CTAAACATGG
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 57 0.85
28 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTAATTTTACAAACTAAGAGTATTT
Found at i:101724634 original size:12 final size:13
Alignment explanation
Indices: 101724598--101724635 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
101724588 AAATATTTGA
101724598 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
101724611 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
101724625 CTTG-TCTTAAT
1 CTTGTTCTTAAT
101724636 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:101729280 original size:47 final size:47
Alignment explanation
Indices: 101729172--101729447 Score: 163
Period size: 47 Copynumber: 5.7 Consensus size: 47
101729162 TGACTGTTAA
* *
101729172 GATACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGGCAAG
1 GATACCATGTAAGACCAAGTCAAGACATGGCATTGGCACTAA-ACAAG
* * * **
101729217 GATCCCGTGTAAGACCAAGTCAAGACATGGCATCGGCACTAATTAAG
1 GATACCATGTAAGACCAAGTCAAGACATGGCATTGGCACTAAACAAG
**
101729264 GACT-CCATGTAAGACCACA-TCAAGATGTGGCATTGGCACTAAAACAAG
1 GA-TACCATGTAAGACCA-AGTCAAGACATGGCATTGGCACT-AAACAAG
* *** *
101729312 GATACCATGTAAGACCATGTTTGGAACATGGCATTTGG---TAAGATAAG
1 GATACCATGTAAGACCAAGTCAAG-ACATGGCA-TTGGCACTAA-ACAAG
* * * * **
101729359 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCAAGTCAAGACATGGCATTG----GCACTA-AA--CAAG
* * *
101729413 GAAATCATGTAAGACCATGTCAAGACATGGCATTG
1 GATACCATGTAAGACCAAGTCAAGACATGGCATTG
101729448 ATGAGTTACA
Statistics
Matches: 181, Mismatches: 29, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
45 35 0.19
46 9 0.05
47 60 0.33
48 27 0.15
49 7 0.04
50 4 0.02
52 3 0.02
53 1 0.01
54 35 0.19
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (47 bp):
GATACCATGTAAGACCAAGTCAAGACATGGCATTGGCACTAAACAAG
Found at i:101729420 original size:54 final size:53
Alignment explanation
Indices: 101729356--101729564 Score: 240
Period size: 53 Copynumber: 3.9 Consensus size: 53
101729346 TTGGTAAGAT
* *
101729356 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC-ATAAGGC
* * * *
101729410 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * * *
101729465 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGT
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
* * * *
101729518 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCA
101729565 AAAAGGAAAA
Statistics
Matches: 134, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.31
54 42 0.31
55 42 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:101729485 original size:55 final size:53
Alignment explanation
Indices: 101729356--101729552 Score: 243
Period size: 54 Copynumber: 3.7 Consensus size: 53
101729346 TTGGTAAGAT
* * *
101729356 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC-ATAAGGC
* * *
101729410 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * * *
101729465 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGT
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* *
101729518 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
101729553 ATGGTAAGTT
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 42 0.34
55 42 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:101743908 original size:20 final size:20
Alignment explanation
Indices: 101743883--101743922 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
101743873 ACAGGGACAC
101743883 GCCCGTGTGTGATTTCTTCA
1 GCCCGTGTGTGATTTCTTCA
101743903 GCCCGTGTGTGATTTCTTCA
1 GCCCGTGTGTGATTTCTTCA
101743923 ATCCGTGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.25, G:0.25, T:0.40
Consensus pattern (20 bp):
GCCCGTGTGTGATTTCTTCA
Found at i:101743928 original size:20 final size:20
Alignment explanation
Indices: 101743884--101743930 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
101743874 CAGGGACACG
*
101743884 CCCGTGTGTGATTTCTTCAG
1 CCCGTGTGTGATTTCTTCAA
101743904 CCCGTGTGTGATTTCTTCAA
1 CCCGTGTGTGATTTCTTCAA
*
101743924 TCCGTGT
1 CCCGTGT
101743931 TCAAGGCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (20 bp):
CCCGTGTGTGATTTCTTCAA
Found at i:101749632 original size:41 final size:41
Alignment explanation
Indices: 101749575--101749653 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
101749565 CTCGGAACAC
101749575 TTCTTTTTTTGTTGTAATAATCTATATTACAACCTAACATG
1 TTCTTTTTTTGTTGTAATAATCTATATTACAACCTAACATG
101749616 TTCTTTTTTTGTTGTAATAATCTATATTACAACCTAAC
1 TTCTTTTTTTGTTGTAATAATCTATATTACAACCTAAC
101749654 CTGTATACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.49
Consensus pattern (41 bp):
TTCTTTTTTTGTTGTAATAATCTATATTACAACCTAACATG
Found at i:101751870 original size:25 final size:24
Alignment explanation
Indices: 101751826--101751876 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
101751816 AAAGGCCATT
* *
101751826 TTTATATGTTGTGTATAATTGTCA
1 TTTATATGTTGTGTAGAATTGGCA
101751850 TTTATATGCTTGTTGT-GAATTGGCA
1 TTTATATG-TTG-TGTAGAATTGGCA
101751875 TT
1 TT
101751877 ATGGATACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 8 0.35
25 12 0.52
26 3 0.13
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.53
Consensus pattern (24 bp):
TTTATATGTTGTGTAGAATTGGCA
Found at i:101753190 original size:27 final size:27
Alignment explanation
Indices: 101753125--101753304 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
101753115 TTTGGTTTAC
101753125 AAAATTACCAAAATACCC-T-GCTTTGT
1 AAAATTACCAAAATACCCTTAG-TTTGT
* * *
101753151 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
101753178 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
101753205 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
101753232 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
101753259 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* **
101753286 GAAATTACTGAAATACCCT
1 AAAATTACCAAAATACCCT
101753305 CGACCTGTAA
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 17 0.12
27 119 0.87
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:101753247 original size:81 final size:80
Alignment explanation
Indices: 101753125--101753357 Score: 279
Period size: 81 Copynumber: 2.9 Consensus size: 80
101753115 TTTGGTTTAC
* *
101753125 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
101753189 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* * *
101753205 AAAATTACCAAAATACCCTTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
101753270 AATACCCCTAATTTGT
65 AATACCCCTAATTTGT
* ** ** ** * **
101753286 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
101753351 AGTACCC
65 AATACCC
101753358 TCGATTTATA
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:101753317 original size:27 final size:27
Alignment explanation
Indices: 101753287--101753361 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
101753277 CTAATTTGTG
101753287 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
101753314 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
101753341 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
101753362 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:101753372 original size:27 final size:27
Alignment explanation
Indices: 101753326--101753672 Score: 349
Period size: 27 Copynumber: 12.9 Consensus size: 27
101753316 ATTATTGAAA
* * * ***
101753326 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
*
101753353 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
101753380 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
101753407 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
101753434 TGCCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCATTT
101753461 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
101753488 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCATTT
* * * *
101753515 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCATTT
* * *
101753542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
101753569 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
101753596 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
101753623 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
101753650 TACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACC
101753673 GAAATACCCT
Statistics
Matches: 279, Mismatches: 37, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 275 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:101753373 original size:54 final size:54
Alignment explanation
Indices: 101753125--101753429 Score: 154
Period size: 54 Copynumber: 5.7 Consensus size: 54
101753115 TTTGGTTTAC
* * * * ** * ** *
101753125 AAAATTACCAAAATACCCT-GCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* * * * * * *
101753178 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCT-TAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTGT
* * * * * * * *
101753232 AAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTGT
* * ** * * **
101753286 GAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGT
1 AAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
*** *
101753340 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
****
101753394 AAAATTACCGTTTTACCCTCGATTTATAGAATTACC
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACC
101753430 ATTTTGCCCT
Statistics
Matches: 208, Mismatches: 35, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
53 21 0.10
54 180 0.87
55 7 0.03
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
Found at i:101753680 original size:27 final size:27
Alignment explanation
Indices: 101753542--101753736 Score: 97
Period size: 27 Copynumber: 7.2 Consensus size: 27
101753532 ATTATCGTTT
* * * ***
101753542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
* * **
101753569 TACCCTCGATTTACAGAATTACC-ATTT
1 TACCCTCGATTTATAAAATTACCGA-AA
* * ***
101753596 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
* * * * ***
101753623 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAA
*
101753650 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGAAA
* * *
101753677 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGAAA
* * *
101753704 TACCC-CTGATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTATAAAATTACCGAAA
101753731 TACCCT
1 TACCCT
101753737 TACTTTTTAA
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGAAA
Found at i:101753708 original size:54 final size:55
Alignment explanation
Indices: 101753650--101753789 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 55
101753640 ATTACTGTTT
*
101753650 TACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTGT-AAAATTACCA-AAA
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAAATTA-CAGAAA
* * * * * *
101753704 TACCC-CTGATTTACAAAGTTACAGAAATACCCTTACTTTTTAAAAATTATAGAAG
1 TACCCTC-GATTTACAAAATTACAGAAATACCCTCAATTTGTAAAAATTACAGAAA
* * * *
101753759 TACCATTGGTTTACAAAATTACTGAAATACC
1 TACCCTCGATTTACAAAATTACAGAAATACC
101753790 TTTGGTTTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
53 1 0.01
54 35 0.50
55 34 0.49
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (55 bp):
TACCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAAATTACAGAAA
Found at i:101753708 original size:81 final size:81
Alignment explanation
Indices: 101753326--101753718 Score: 218
Period size: 81 Copynumber: 4.9 Consensus size: 81
101753316 ATTATTGAAA
* ** * * **** *
101753326 TACCCTCGACTTGTAAAATTACCA-AAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCATAA-TACCCTCAATTTATAAAATTACCAAAATACCCTTGAT
** *
101753390 TTGTAAAATTACCGTTT
65 TTACAGAATTACCGTTT
* * ** * * * * * *** *
101753407 TACCCTCGATTTATAGAATTACCATTTTGCCCTCAGTTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATT
* *
101753472 TATAGAATTACCATTT
66 TACAGAATTACCGTTT
* * * ** * * * * **** *
101753488 TACCC-CTAATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTTTTACCCTCGA
1 TACCCTC-GATTTACAAAATTACCATAATACCCTC-AATTTATAAAATTACCAAAATACCCTTGA
*
101753551 CTTACAGAATTACCGTTT
64 TTTACAGAATTACCGTTT
* ** * * *****
101753569 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATT
*
101753634 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* *
101753650 TACCCTCGATTTACAAAATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTCGATTTACAAAATTACC-ATAATACCCTCAATTTATAAAATTACCAAAATACCCTTGAT
101753714 TTACA
65 TTACA
101753719 AAGTTACAGA
Statistics
Matches: 256, Mismatches: 50, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
80 2 0.01
81 251 0.98
82 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATT
TACAGAATTACCGTTT
Found at i:101753789 original size:27 final size:26
Alignment explanation
Indices: 101753742--101753797 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
101753732 ACCCTTACTT
*
101753742 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
101753768 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
101753795 TTT
1 TTT
101753798 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:101753915 original size:27 final size:27
Alignment explanation
Indices: 101753851--101753915 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
101753841 ACCCCTAAAA
*
101753851 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
101753878 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
101753905 GGTAAAATGAC
1 GGTAAAATGAC
101753916 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:101755103 original size:25 final size:25
Alignment explanation
Indices: 101755074--101755121 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
101755064 TTATAATATG
* * *
101755074 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
101755099 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
101755122 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:101755190 original size:20 final size:20
Alignment explanation
Indices: 101755165--101755223 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
101755155 TAAATATGGT
101755165 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
101755185 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
101755205 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
101755224 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:101755301 original size:24 final size:24
Alignment explanation
Indices: 101755274--101755440 Score: 266
Period size: 24 Copynumber: 7.0 Consensus size: 24
101755264 GAGGAAGTGA
101755274 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
101755298 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
101755322 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
101755346 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
101755369 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
101755393 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
101755417 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
101755441 ATGATAAAGC
Statistics
Matches: 137, Mismatches: 3, Indels: 5
0.94 0.02 0.03
Matches are distributed among these distances:
23 23 0.17
24 103 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:101755391 original size:71 final size:71
Alignment explanation
Indices: 101755274--101755441 Score: 266
Period size: 71 Copynumber: 2.3 Consensus size: 71
101755264 GAGGAAGTGA
101755274 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
101755339 AGTTATC
65 AGTTATC
* *
101755346 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
101755411 GTTATT
66 GTTATC
*
101755417 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
101755442 TGATAAAGCA
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
71 55 0.61
72 35 0.39
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:101755668 original size:31 final size:31
Alignment explanation
Indices: 101755632--101755695 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
101755622 CATTTACAGT
* *
101755632 AAAGGCTTCGGCCTAGTAATATGAAATCTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
101755663 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
101755694 AA
1 AA
101755696 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:101766607 original size:49 final size:47
Alignment explanation
Indices: 101766340--101766735 Score: 569
Period size: 49 Copynumber: 8.3 Consensus size: 47
101766330 CCCTTCGGGA
* *
101766340 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
101766387 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
101766434 CTTACCACACATATACACTTTCACATTCATCACAT-GGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
101766480 CTTATCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
101766527 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
101766574 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
101766623 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
101766672 CTCATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
101766721 CTTATCACATATATA
1 CTTATCACATATATA
101766736 TATCTCATAC
Statistics
Matches: 318, Mismatches: 28, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
46 39 0.12
47 138 0.43
49 141 0.44
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:101771886 original size:3 final size:3
Alignment explanation
Indices: 101771873--101771915 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
101771863 AAGAGTAGGT
101771873 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101771916 AAGAAAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:101773059 original size:13 final size:13
Alignment explanation
Indices: 101773041--101773067 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101773031 GCTCGGTAGG
101773041 GACACGCCCGTGT
1 GACACGCCCGTGT
101773054 GACACGCCCGTGT
1 GACACGCCCGTGT
101773067 G
1 G
101773068 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:101785875 original size:19 final size:19
Alignment explanation
Indices: 101785841--101785879 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
101785831 AAGTTCGTAC
*
101785841 TTTGGCCCATTTTCTCTGTT
1 TTTGGCCCAGTTTCTC-GTT
101785861 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
101785879 T
1 T
101785880 ATTTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 8 0.44
ACGTcount: A:0.03, C:0.26, G:0.18, T:0.54
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:101790050 original size:27 final size:27
Alignment explanation
Indices: 101790008--101790118 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
101789998 AATCTCATAT
* * *
101790008 TTGTAGGCTAGCATTACTGGAATACCC
1 TTGTAGGGTAGAATTACTGAAATACCC
101790035 TTGTAGGGTAGAATTACTGAAATACCC
1 TTGTAGGGTAGAATTACTGAAATACCC
**
101790062 TTGTAGGGTAGAATTACCAAAATACCC
1 TTGTAGGGTAGAATTACTGAAATACCC
**
101790089 TTGTAGGGTAGAATTACCAAAATACCC
1 TTGTAGGGTAGAATTACTGAAATACCC
101790116 TTG
1 TTG
101790119 GTTTATAAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (27 bp):
TTGTAGGGTAGAATTACTGAAATACCC
Found at i:101790130 original size:27 final size:27
Alignment explanation
Indices: 101790073--101790293 Score: 207
Period size: 27 Copynumber: 8.2 Consensus size: 27
101790063 TGTAGGGTAG
** *
101790073 AATTACCAAAATACCCTTG-TAGGGTAG
1 AATTACCAAAATACCCTTGAT-TTGTAA
* *
101790100 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
101790127 AATTACCAAAATACCCTAG-TTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
101790153 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
101790180 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
* ** *
101790207 AATTACTAAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
101790234 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * **
101790261 AATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
101790288 AATTAC
1 AATTAC
101790294 TATTTTACTC
Statistics
Matches: 165, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
26 24 0.15
27 136 0.82
28 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:101790131 original size:54 final size:53
Alignment explanation
Indices: 101790028--101790194 Score: 201
Period size: 54 Copynumber: 3.1 Consensus size: 53
101790018 GCATTACTGG
** ** *
101790028 AATACCCTTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCAA
1 AATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGT-TTGTAAAATTACCAA
*
101790082 AATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTATAAAATTACCAA
1 AATACCCTTGTAGGGTAGAATTACCAAAATACCCTT-GTTTGTAAAATTACCAA
* ** * *
101790136 AATACCCTAGT-TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AATACCCTTGTAGGGTAGAATTACCAAAATA-CCCTTGTTTGTAAAATTACCAA
101790189 AATACC
1 AATACC
101790195 TCTGATTTGT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
53 38 0.38
54 59 0.60
55 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (53 bp):
AATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGTTTGTAAAATTACCAA
Found at i:101790188 original size:80 final size:80
Alignment explanation
Indices: 101790073--101790293 Score: 239
Period size: 80 Copynumber: 2.7 Consensus size: 80
101790063 TGTAGGGTAG
* ** * *
101790073 AATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
1 AATTACCAAAATACCCTAGT-TTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAA
**
101790138 TACCCT-AGTTTGTAA
65 TACCCTCAACTTGTAA
* * *
101790153 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCTCTGATTTGTGAAATTACTAAA
1 AATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCT-TGATTTATAAAATTACCAAA
101790217 ATACCCTCAACTTGTAA
64 ATACCCTCAACTTGTAA
** * * * * *
101790234 AATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTAC
1 AATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTAC
101790294 TATTTTACTC
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.03
80 57 0.49
81 54 0.46
82 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAAT
ACCCTCAACTTGTAA
Found at i:101790291 original size:81 final size:80
Alignment explanation
Indices: 101790100--101790295 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 80
101790090 TGTAGGGTAG
* * * **
101790100 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAAT
1 AATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTAACTTGTAAAATTACCAAAAT
* *
101790165 ACCCCTAGTTTGTAA
66 ACCCCGAGCTTGTAA
* * **
101790180 AATTACCAAAATA-CCTCTGATTTGTGAAATTACTAAAATACCCTCAACTTGTAAAATTACTGAA
1 AATTACCAAAATACCCTC-GATTTATAAAATTACTAAAATACCCT-AACTTGTAAAATTACCAAA
101790244 ATACCCTCGA-CTTGTAA
64 ATACCC-CGAGCTTGTAA
* *
101790261 AATTACCAAAGTACCCTCGATTTACAAAATTACTA
1 AATTACCAAAATACCCTCGATTTATAAAATTACTA
101790296 TTTTACTCTC
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
79 3 0.03
80 35 0.36
81 53 0.55
82 6 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTAACTTGTAAAATTACCAAAAT
ACCCCGAGCTTGTAA
Found at i:101790310 original size:27 final size:27
Alignment explanation
Indices: 101790272--101790627 Score: 455
Period size: 27 Copynumber: 13.2 Consensus size: 27
101790262 ATTACCAAAG
*
101790272 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
101790299 TACTCTCAATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
101790326 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* *
101790353 CACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
101790380 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
101790407 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
101790434 TACCCTTGCTTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
101790461 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
101790488 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
101790515 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
101790542 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
101790569 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * *
101790596 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
101790623 TACCC
1 TACCC
101790628 CTAGGGTGTT
Statistics
Matches: 287, Mismatches: 38, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 284 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:101791174 original size:6 final size:6
Alignment explanation
Indices: 101791135--101791265 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
101791125 TTGCATTTAC
* * *
101791135 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
101791184 -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
101791234 ATTCTC ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
101791266 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.05
6 79 0.82
7 9 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:101791230 original size:31 final size:31
Alignment explanation
Indices: 101791135--101791244 Score: 121
Period size: 31 Copynumber: 3.4 Consensus size: 31
101791125 TTGCATTTAC
* * *
101791135 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
101791166 ATTCTGATTCTAATTCTGTCACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACC------TGATTCTG
101791203 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
101791234 ATTCTCATTCT
1 ATTCTGATTCT
101791245 CATTTTGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
31 38 0.57
37 29 0.43
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:101791254 original size:37 final size:37
Alignment explanation
Indices: 101791134--101791256 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 37
101791124 ATTGCATTTA
* *
101791134 CATTCTGATTTTGATTCTGTTACCTGATACTGATTCT
1 CATTCTGATTTTGATTCTGTCACCTGATTCTGATTCT
* * *
101791171 GATTCT-A-----ATTCTGTCACCTAATTTTGATTCT
1 CATTCTGATTTTGATTCTGTCACCTGATTCTGATTCT
* *
101791202 GATTCTGATTCTGATTCTGTCACCTGATTCTGATTCT
1 CATTCTGATTTTGATTCTGTCACCTGATTCTGATTCT
*
101791239 CATTCTCATTTTGATTCT
1 CATTCTGATTTTGATTCT
101791257 AGTTCTGATA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
31 26 0.37
32 1 0.01
36 1 0.01
37 42 0.60
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (37 bp):
CATTCTGATTTTGATTCTGTCACCTGATTCTGATTCT
Found at i:101792642 original size:24 final size:24
Alignment explanation
Indices: 101792564--101792699 Score: 96
Period size: 24 Copynumber: 5.6 Consensus size: 24
101792554 TTTAAAGGTC
* *
101792564 CGCACACATAGTGCTCTTACTCAT-T
1 CGCACACATAGTGC-CATA-TAATCT
* * *
101792589 CGCACACATAGTGCCGTGT-TTCCT
1 CGCACACATAGTGCCATATAAT-CT
* *
101792613 CACACACATAGTGCTATATAATCT
1 CGCACACATAGTGCCATATAATCT
* * *
101792637 CGCACACATAGTGCCATGTAGTTTT
1 CGCACACATAGTGCCATATA-ATCT
* ** *
101792662 TGCACACATAGTGCCGCATAACCT
1 CGCACACATAGTGCCATATAATCT
101792686 CGCACACATAGTGC
1 CGCACACATAGTGC
101792700 TGAAATTTCT
Statistics
Matches: 86, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 51 0.59
25 33 0.38
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (24 bp):
CGCACACATAGTGCCATATAATCT
Found at i:101792668 original size:49 final size:47
Alignment explanation
Indices: 101792564--101792699 Score: 132
Period size: 49 Copynumber: 2.8 Consensus size: 47
101792554 TTTAAAGGTC
* *
101792564 CGCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGTGTTTCCT
1 CGCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGTGTTT-CT
*
101792613 CACACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-T
1 CGCACACATAGTGCTATATAATCTCGCACACATAGTGCC--GT-GTTTCT
* *** *
101792662 TGCACACATAGTGCCGCATAACCTCGCACACATAGTGC
1 CGCACACATAGTGCTATATAATCTCGCACACATAGTGC
101792700 TGAAATTTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
48 16 0.22
49 48 0.65
50 6 0.08
51 4 0.05
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (47 bp):
CGCACACATAGTGCTATATAATCTCGCACACATAGTGCCGTGTTTCT
Found at i:101797066 original size:9 final size:9
Alignment explanation
Indices: 101797052--101797077 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
101797042 TAAAATTTGA
101797052 AATTTAAAT
1 AATTTAAAT
101797061 AATTTAAAT
1 AATTTAAAT
101797070 AATTTAAA
1 AATTTAAA
101797078 AACCATTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTTAAAT
Found at i:101805459 original size:80 final size:80
Alignment explanation
Indices: 101805326--101805493 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
101805316 TGAATGATAC
* ** *
101805326 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
101805390 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
101805406 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAA-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
101805470 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101805486 CC-GGCTAA
1 CCGGGCTAA
101805494 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 8 0.11
80 65 0.86
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:101805488 original size:40 final size:40
Alignment explanation
Indices: 101805326--101805493 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
101805316 TGAATGATAC
* * * *
101805326 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
101805366 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
101805406 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
101805446 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
101805486 CC-GGCTAA
1 CCGGGCTAA
101805494 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 8 0.08
40 91 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:101813549 original size:80 final size:80
Alignment explanation
Indices: 101813416--101813583 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
101813406 TGAATGATAC
* ** *
101813416 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
101813480 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
101813496 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAA-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
101813560 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101813576 CC-GGCTAA
1 CCGGGCTAA
101813584 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 8 0.11
80 65 0.86
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:101813578 original size:40 final size:40
Alignment explanation
Indices: 101813416--101813583 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
101813406 TGAATGATAC
* * * *
101813416 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
101813456 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
101813496 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
101813536 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
101813576 CC-GGCTAA
1 CCGGGCTAA
101813584 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 8 0.08
40 91 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:101821642 original size:80 final size:80
Alignment explanation
Indices: 101821509--101821676 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
101821499 TGAATGATAC
* ** *
101821509 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
101821573 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
101821589 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAA-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
101821653 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101821669 CC-GGCTAA
1 CCGGGCTAA
101821677 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 8 0.11
80 65 0.86
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:101821671 original size:40 final size:40
Alignment explanation
Indices: 101821509--101821676 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
101821499 TGAATGATAC
* * * *
101821509 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
101821549 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
101821589 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
101821629 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
101821669 CC-GGCTAA
1 CCGGGCTAA
101821677 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 8 0.08
40 91 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:101824353 original size:49 final size:49
Alignment explanation
Indices: 101824286--101824808 Score: 851
Period size: 49 Copynumber: 10.8 Consensus size: 49
101824276 ATTCACATTA
* * *
101824286 GCCATTCGG-CTTACCACATATATATTACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATA-TACACTTTCACATTCATCACATCG
*
101824335 GCCATTAGGCC-TATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
101824383 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
101824432 GCCATTAGGCCTTATGCACATATATACACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTAT-CACATATATATACACTTTCACATTCATCACATCG
*
101824482 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
101824531 GCCATTAGGCCTTATCAC--ATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
101824578 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
101824627 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
101824676 GCCATTAGGCCTTAGCACATATATACACACTTTCACATTCATCACATC-
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
101824724 GCCATTA-GCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
101824772 GCCATTAGGCCTTATCACATATATATACACTTTCACA
1 GCCATTAGGCCTTATCACATATATATACACTTTCACA
101824809 AATTTTAATA
Statistics
Matches: 443, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 81 0.18
48 47 0.11
49 268 0.60
50 47 0.11
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:101824547 original size:22 final size:22
Alignment explanation
Indices: 101824522--101824597 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
101824512 TTTCACATTC
101824522 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
101824544 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
101824568 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
101824591 ATCACAT
1 ATCACAT
101824598 ATATACACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:101824617 original size:96 final size:96
Alignment explanation
Indices: 101824286--101824808 Score: 838
Period size: 96 Copynumber: 5.4 Consensus size: 96
101824276 ATTCACATTA
* * *
101824286 GCCATTCGG-CTTACCACATATATATTACACTTTCACATTCATCACGTCGGCCATTAGGCC-TAT
1 GCCATTAGGCCTTATCACATATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
101824349 CACATATATACACACTTTCACATTCATCACATCG
65 CAC--ATATACACACTTTCACATTCATCACATCG
*
101824383 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-
*
101824448 CACATATATACACATTTTCACATTCATCACATCG
65 CAC--ATATACACACTTTCACATTCATCACATCG
*
101824482 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
101824547 ACATATACACACTTTCACATTCATCACATCG
66 ACATATACACACTTTCACATTCATCACATCG
*
101824578 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
101824643 ACATATACATACACTTTCACATTCATCACATCG
66 ACATATAC--ACACTTTCACATTCATCACATCG
* *
101824676 GCCATTAGGCCTTAGCACATATATACACACTTTCACATTCATCACATC-GCCATTA-GCCTTATC
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
101824739 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATAC--ACACTTTCACATTCATCACATCG
101824772 GCCATTAGGCCTTATCACATATATATACACTTTCACA
1 GCCATTAGGCCTTATCACATATATATACACTTTCACA
101824809 AATTTTAATA
Statistics
Matches: 409, Mismatches: 12, Indels: 11
0.95 0.03 0.03
Matches are distributed among these distances:
96 174 0.43
97 49 0.12
98 89 0.22
99 97 0.24
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (96 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATACACACTTTCACATTCATCACATCG
Found at i:101824652 original size:145 final size:145
Alignment explanation
Indices: 101824286--101824808 Score: 856
Period size: 145 Copynumber: 3.6 Consensus size: 145
101824276 ATTCACATTA
* * * *
101824286 GCCATTCGG-CTTACCACATATATATTACACTTTCACATTCATCACGTCGGCCATTAGGCC-TAT
1 GCCATTAGGCCTTATCACATATATA-CACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
101824349 CACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACT
65 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC--ACACT
101824414 TTCACATTCATCACATCG
128 TTCACATTCATCACATCG
*
101824432 GCCATTAGGCCTTATGCACATATATACACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTAT-CACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
101824497 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTT
65 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTT
101824562 CACATTCATCACATCG
130 CACATTCATCACATCG
101824578 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
101824643 ACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCACATATATACACACTT
66 ACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACACACTT
101824708 TCACATTCATCACATC-
129 TCACATTCATCACATCG
* * *
101824724 GCCATTA-GCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
101824788 ACATATATATACACTTTCACA
66 ACATATACATACACTTTCACA
101824809 AATTTTAATA
Statistics
Matches: 359, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
145 173 0.48
146 53 0.15
147 64 0.18
148 69 0.19
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (145 bp):
GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTC
ACATTCATCACATCG
Found at i:101828617 original size:40 final size:40
Alignment explanation
Indices: 101828568--101828919 Score: 623
Period size: 40 Copynumber: 8.8 Consensus size: 40
101828558 CCAGCATGAT
* * *
101828568 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
101828608 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
101828648 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
101828688 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
101828728 TGCTCTTCGAAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
101828768 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
101828808 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
101828848 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
101828888 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
101828920 CTCAATTCTC
Statistics
Matches: 304, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 304 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:101830979 original size:49 final size:49
Alignment explanation
Indices: 101830914--101831471 Score: 990
Period size: 49 Copynumber: 11.4 Consensus size: 49
101830904 TTTACCACAT
* *
101830914 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
101830963 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
101831012 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
101831061 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
101831110 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
101831159 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
101831208 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
101831257 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
101831306 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
101831355 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
101831404 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
101831453 ATATATATACACTTTCACA
1 ATATATACACACTTTCACA
101831472 AATTTTAATA
Statistics
Matches: 487, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 487 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:101837295 original size:38 final size:38
Alignment explanation
Indices: 101837236--101837334 Score: 135
Period size: 38 Copynumber: 2.6 Consensus size: 38
101837226 ATTTGATGTG
* * *
101837236 TATCCGGCTTAAAACCCGCAGGCTTCATGCTGGTAAAA
1 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTAAAA
* **
101837274 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTAAAA
*
101837312 TATCCGGGATAAATCCTGCAGGC
1 TATCCGGGTTAAATCCTGCAGGC
101837335 CTAGTGCTGG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTAAAA
Found at i:101837342 original size:38 final size:38
Alignment explanation
Indices: 101837263--101837352 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 38
101837253 GCAGGCTTCA
** * * *
101837263 TGCTGGTAAAATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGATAAATCCTGCAGGCCTAG
101837301 TGCTGGTATTATATCCGGGATAAATCCTGCAGGCCTAG
1 TGCTGGTATTATATCCGGGATAAATCCTGCAGGCCTAG
101837339 TGCTGGTATTATAT
1 TGCTGGTATTATAT
101837353 TGGGCCCTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGATAAATCCTGCAGGCCTAG
Found at i:101837559 original size:43 final size:43
Alignment explanation
Indices: 101837350--101837546 Score: 315
Period size: 43 Copynumber: 4.6 Consensus size: 43
101837340 GCTGGTATTA
* *
101837350 TATT-GGGCCCTCGTGCCTAGTAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
* *
101837392 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
* *
101837435 TATTCGGGCTTTCGTGCCTAGTAGACTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
*
101837478 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
*
101837521 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGTAGGC
101837547 GTAATGCCGG
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
42 4 0.03
43 138 0.97
ACGTcount: A:0.11, C:0.23, G:0.34, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
Found at i:101842057 original size:24 final size:23
Alignment explanation
Indices: 101842030--101842084 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
101842020 TTACCCAGGC
101842030 TAAATAG-GAAACTCATAAGAGTTT
1 TAAATAGAG-AACTCAT-AGAGTTT
*
101842054 TAAATCAGAGAGCTCATAGAGTTT
1 TAAAT-AGAGAACTCATAGAGTTT
101842078 TACAATA
1 TA-AATA
101842085 ACTCTGAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 15 0.56
25 11 0.41
26 1 0.04
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (23 bp):
TAAATAGAGAACTCATAGAGTTT
Found at i:101843689 original size:3 final size:3
Alignment explanation
Indices: 101843681--101843740 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
101843671 ATGTAGTGAA
*
101843681 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
101843729 ATT ATT ATT ATT
1 ATT ATT ATT ATT
101843741 TAAAACAGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:101844206 original size:19 final size:20
Alignment explanation
Indices: 101844182--101844220 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
101844172 AAAATATCAA
*
101844182 TTTT-AACCCTTTAAATTTT
1 TTTTAAACCCTTAAAATTTT
*
101844201 TTTTAAACTCTTAAAATTTT
1 TTTTAAACCCTTAAAATTTT
101844221 GAAATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTAAACCCTTAAAATTTT
Found at i:101844541 original size:2 final size:2
Alignment explanation
Indices: 101844534--101844569 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
101844524 ATGATAAATT
*
101844534 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101844570 AATGTATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:101848469 original size:10 final size:10
Alignment explanation
Indices: 101848454--101848480 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
101848444 AAATAAAGAG
101848454 AAAAAAAATC
1 AAAAAAAATC
101848464 AAAAAAAATC
1 AAAAAAAATC
101848474 AAAAAAA
1 AAAAAAA
101848481 GACCTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:101849348 original size:44 final size:43
Alignment explanation
Indices: 101849311--101849896 Score: 468
Period size: 44 Copynumber: 13.3 Consensus size: 43
101849301 CTGTAATTTT
* * * *
101849311 AGGGAGATAGGATTAGTAGCTTCAATCTGCTCTACTGTAACTTT
1 AGGGAGATAAGATT-GTAGCTTTAATCTGCTCTACTGCAACTTC
* * * * *
101849355 AGAGG-TATAAGATTGACATCTTCAACCTGCTCTACTGCAACTTC
1 AG-GGAGATAAGATTG-TAGCTTTAATCTGCTCTACTGCAACTTC
* *
101849399 AGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC
1 AGGGAGATAA-GATTGTAGCTTTAATCTGCTCTACTGCAACTTC
*
101849443 AGAGAGATAAGATTTGTAGCTTTAATCTGCT-TCACTGCAACTTC
1 AGGGAGATAAGA-TTGTAGCTTTAATCTGCTCT-ACTGCAACTTC
* *
101849487 AGGGAGATAAGATCTGTGGCTTTAATCTGCTCCACTGCAACTTC
1 AGGGAGATAAGAT-TGTAGCTTTAATCTGCTCTACTGCAACTTC
* *** * *
101849531 AGGGAGATAAGGTT-TTTTTTTAACCTGCTTCT-CTGCAAATTC
1 AGGGAGATAAGATTGTAGCTTTAATCTGC-TCTACTGCAACTTC
* * * *
101849573 AAGGAAAT-AGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTT
1 AGGGAGATAAG-ATT-GTAGCTTTAATCTGCTCTACTGCAACTTC
* * * *
101849617 AGGGAGATAAGATTGGTA-TTTTCAGTATGCTCCACTGCAACTTC
1 AGGGAGATAAGATT-GTAGCTTT-AATCTGCTCTACTGCAACTTC
** * * *
101849661 AGGGAGATAAGACTTGTAATTTTCAATCTACTCCACTACAACTTC
1 AGGGAGATAAGA-TTGTAGCTTT-AATCTGCTCTACTGCAACTTC
* * * *
101849706 AGGGAGATAAGACTCGTA-ATTTCGACCTGCTCTACTGCAACTTC
1 AGGGAGATAAGA-TTGTAGCTTT-AATCTGCTCTACTGCAACTTC
* * * *
101849750 AGAGAGATAAGTTTTATAGCTTTAATCTGCTCTACTGCAACTTT
1 AGGGAGATAAG-ATTGTAGCTTTAATCTGCTCTACTGCAACTTC
* * * *
101849794 AGAGAGATAAGATTTGCTATCTTTGATCTACT-TCACTGCAACTTC
1 AGGGAGATAAGA-TTG-TAGCTTTAATCTGCTCT-ACTGCAACTTC
* * * * *
101849839 AAGGAGATAAGATCTGTGGCTTTAATTTGCTCCACTACAACTTC
1 AGGGAGATAAGAT-TGTAGCTTTAATCTGCTCTACTGCAACTTC
*
101849883 AGAGAGATAAGATT
1 AGGGAGATAAGATT
101849897 TGCCATAATG
Statistics
Matches: 438, Mismatches: 80, Indels: 49
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.00
42 27 0.06
43 15 0.03
44 309 0.71
45 85 0.19
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (43 bp):
AGGGAGATAAGATTGTAGCTTTAATCTGCTCTACTGCAACTTC
Found at i:101849621 original size:130 final size:130
Alignment explanation
Indices: 101849317--101849671 Score: 391
Period size: 130 Copynumber: 2.7 Consensus size: 130
101849307 TTTTAGGGAG
* * * * *
101849317 ATAGGATTAGTAGCTTCAATCTGCTCTACTGTAACTTTAGAGG-TATAAGATT-GACATCTTCAA
1 ATAGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAG-GGAGATAAGATTGGAC-T-TT-AA
* * * *
101849380 CCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAG
62 TCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAACCTGCTCTACTGCAAATTCAG
*
101849445 AGAG
127 AGAA
* * * *
101849449 ATA-AGATTTGTAGCTTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATCTGTGGCTTTAAT
1 ATAGA-ATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT-TG-GACTTTAAT
**
101849513 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTT-T-TTTTTAACCTGCTTCT-CTGCAAATTCA-
63 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAACCTGC-TCTACTGCAAATTCAG
101849574 AGGAA
127 A-GAA
* * *
101849579 ATAGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTATTTTCAGTA
1 ATAGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGG-ACTTT-AATC
101849644 TGCTCCACTGCAACTTCAGGGAGATAAG
64 TGCTCCACTGCAACTTCAGGGAGATAAG
101849672 ACTTGTAATT
Statistics
Matches: 190, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
128 1 0.01
129 6 0.03
130 97 0.51
131 7 0.04
132 73 0.38
133 3 0.02
134 1 0.01
135 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (130 bp):
ATAGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGACTTTAATCTG
CTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAACCTGCTCTACTGCAAATTCAGAGAA
Found at i:101849703 original size:89 final size:87
Alignment explanation
Indices: 101849311--101849896 Score: 518
Period size: 88 Copynumber: 6.7 Consensus size: 87
101849301 CTGTAATTTT
* * * * * ** *
101849311 AGGGAGATAGGATTAGTAGCTTCAATCTGCTCTACTGTAACTTTAGAG-GTATAAGATTGACATC
1 AGGGAGATAAGATT-GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAG-ATAAGATTGGTATT
* *
101849375 TTCAACCTGCTCTACTGCAACTTC
64 TTCAATCTGCTCCACTGCAACTTC
* * * * *
101849399 AGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCT
1 AGGGAGATAA-GATTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTA-TT
*
101849464 TT-AATCTGCTTCACTGCAACTTC
64 TTCAATCTGCTCCACTGCAACTTC
* * * *
101849487 AGGGAGATAAGATCTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTT--TTTTT
1 AGGGAGATAAGAT-TGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTATTT
* * * * *
101849550 TTAACCTGCTTCTCTGCAAATTC
65 TCAATCTGCTCCACTGCAACTTC
* * * *
101849573 AAGGAAAT-AGAATTAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTATT
1 AGGGAGATAAG-ATT-GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTATT
* *
101849637 TTCAGTATGCTCCACTGCAACTTC
64 TTCAATCTGCTCCACTGCAACTTC
** * * * * * *
101849661 AGGGAGATAAGACTTGTAATTTTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTCGTAAT
1 AGGGAGATAAGA-TTGTAGCTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTATT
* * *
101849726 TTCGACCTGCTCTACTGCAACTTC
64 TTCAATCTGCTCCACTGCAACTTC
* * * * * *
101849750 AGAGAGATAAGTTTTATAGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATC
1 AGGGAGATAAG-ATTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TTGGTAT-
* * *
101849815 TTT-GATCTACTTCACTGCAACTTC
63 TTTCAATCTGCTCCACTGCAACTTC
* * * *
101849839 AAGGAGATAAGATCTGTGGCTTTAATTTGCTCCACTACAACTTCAGAGAGATAAGATT
1 AGGGAGATAAGAT-TGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
101849897 TGCCATAATG
Statistics
Matches: 402, Mismatches: 80, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
85 6 0.01
86 67 0.17
87 2 0.00
88 178 0.44
89 146 0.36
90 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (87 bp):
AGGGAGATAAGATTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGTATTTT
CAATCTGCTCCACTGCAACTTC
Found at i:101849870 original size:133 final size:132
Alignment explanation
Indices: 101849313--101849898 Score: 516
Period size: 133 Copynumber: 4.4 Consensus size: 132
101849303 GTAATTTTAG
* * * * * * *
101849313 GGAGATAGGAT-TAGTAGCTTCAATCTGCTCTACTGTAACTTTAGAG-GTATAAGA-TTGACATC
1 GGAGATAAGATCTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAG-ATAAGATTTG-TAGC
* * * * * *
101849375 TTCAACCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGC-TCTACTGCAA
64 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-TATCTTTAATCTACTTC-ACTGCAA
101849439 CTTC-A
127 CTTCAA
* * * * *
101849444 GAGAGATAAGAT-TTGTAGCTTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATCTGTGGCT
1 G-GAGATAAGATCTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCT
* * * * * *
101849508 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTT-TTTTTAACCTGCTTCTCTGCAAATT
65 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTATCTTTAATCTACTTCACTGCAACTT
101849572 CAA
130 CAA
* * * * *
101849575 GGAAAT-AGAAT-TAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTA-TT
1 GGAGATAAG-ATCTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCT
* * * * *
101849637 TTCAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAT-TTTCAATCTACTCCACTACA
65 TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-TTATCTTT-AATCTACTTCACTGCA
*
101849701 ACTTCAG
126 ACTTCAA
* * * * * * *
101849708 GGAGATAAGA-CTCGTA-ATTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGTTTTATAGCT
1 GGAGATAAGATCTAGTAGCTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCT
* * * *
101849771 TTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTTGATCTACTTCACTGCAAC
65 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT--TATCTTTAATCTACTTCACTGCAAC
101849836 TTCAA
128 TTCAA
* * *
101849841 GGAGATAAGATCT-GTGGCTTTAATTTGCTCCACTACAACTTCAGAGAGATAAGATTTG
1 GGAGATAAGATCTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG
101849899 CCATAATGAC
Statistics
Matches: 365, Mismatches: 70, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
129 5 0.01
130 97 0.27
131 9 0.02
132 89 0.24
133 152 0.42
134 13 0.04
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (132 bp):
GGAGATAAGATCTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTT
TAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTATCTTTAATCTACTTCACTGCAACTTC
AA
Found at i:101849899 original size:89 final size:87
Alignment explanation
Indices: 101849134--101849898 Score: 514
Period size: 88 Copynumber: 8.6 Consensus size: 87
101849124 ATTCAGATAA
* * * * * * *
101849134 ATAAGACCTGTAG-TTTCAATCTACTCCGCTGCAACTTCAGGGACATAAGATTTGTGGTTTTTAG
1 ATAAGATCTGTAGCTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT--ATTTTAA
* * * * *
101849198 TCGGCTCCGCTACAATTTCAAGGAG
63 TCTGCTTCACTGCAACTTCAAGGAG
* * * * * **
101849223 ATAAGACTTGCTATGGTAGATTTAATCCGAC-CTACTGCAACTTTAGAG-GTATAGGATTCATCA
1 ATAAGA--T-C--T-GTAGCTTTAATCTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGT-A
* * * *
101849286 TTTTAAT-TCGCTTCACTGTAATTTTAGGGAG
57 TTTTAATCT-GCTTCACTGCAACTTCAAGGAG
* * * * * * *
101849317 ATAGGAT-TAGTAGCTTCAATCTGCTCTACTGTAACTTTAGAG-GTATAAGA-TTGACATCTTCA
1 ATAAGATCT-GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAG-ATAAGATTTG-TAT-TTTA
* *
101849379 ACCTGC-TCTACTGCAACTTCAGGGAG
62 ATCTGCTTC-ACTGCAACTTCAAGGAG
* * * * *
101849405 ATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATC
1 ATAAGATCTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTA-TTTTAATC
*
101849470 TGCTTCACTGCAACTTCAGGGAG
65 TGCTTCACTGCAACTTCAAGGAG
* * * * *
101849493 ATAAGATCTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTT-TTTTTTAACCT
1 ATAAGATCTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTATTTTAATCT
* * *
101849557 GCTTCTCTGCAAATTCAAGGAA
66 GCTTCACTGCAACTTCAAGGAG
* * * *
101849579 AT-AGAAT-TAGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTATTTTCAG
1 ATAAG-ATCT-GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTATTTT-AA
* * *
101849642 TATGCTCCACTGCAACTTCAGGGAG
63 TCTGCTTCACTGCAACTTCAAGGAG
** * * * * * **
101849667 ATAAGA-CTTGTAATTTTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTCGTAATTTCGA
1 ATAAGATC-TGTAGCTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT-ATTTTAA
*
101849731 CCTGC-TCTACTGCAACTTC-AGAGAG
63 TCTGCTTC-ACTGCAACTTCAAG-GAG
* * * * * *
101849756 ATAAGTTTTATAGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTTGAT
1 ATAAGATCTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAT-TTTAAT
*
101849821 CTACTTCACTGCAACTTCAAGGAG
64 CTGCTTCACTGCAACTTCAAGGAG
* * *
101849845 ATAAGATCTGTGGCTTTAATTTGCTCCACTACAACTTCAGAGAGATAAGATTTG
1 ATAAGATCTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG
101849899 CCATAATGAC
Statistics
Matches: 530, Mismatches: 110, Indels: 72
0.74 0.15 0.10
Matches are distributed among these distances:
85 3 0.01
86 69 0.13
87 12 0.02
88 229 0.43
89 146 0.28
90 8 0.02
92 2 0.00
94 28 0.05
95 29 0.05
96 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (87 bp):
ATAAGATCTGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTATTTTAATCT
GCTTCACTGCAACTTCAAGGAG
Found at i:101858542 original size:13 final size:13
Alignment explanation
Indices: 101858520--101858552 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
101858510 AAGGATTTGT
101858520 TTAT-TAAACTAA
1 TTATCTAAACTAA
101858532 TTATCTAAACTAA
1 TTATCTAAACTAA
*
101858545 TTAACTAA
1 TTATCTAA
101858553 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:101862923 original size:40 final size:40
Alignment explanation
Indices: 101862868--101862945 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
101862858 TAAACTAAGG
101862868 GTGCACAGAGAGAAAATTGGGAAAAAGCTTTTGGGAAAGC
1 GTGCACAGAGAGAAAATTGGGAAAAAGCTTTTGGGAAAGC
101862908 GTGCACAGAGAGAAAATTGGGAAAAAGCTTTTGGGAAA
1 GTGCACAGAGAGAAAATTGGGAAAAAGCTTTTGGGAAA
101862946 ACTCGATTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.18
Consensus pattern (40 bp):
GTGCACAGAGAGAAAATTGGGAAAAAGCTTTTGGGAAAGC
Found at i:101872226 original size:22 final size:21
Alignment explanation
Indices: 101872178--101872222 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
101872168 CTAAAGTTTG
* *
101872178 AAATTATAAAAGAATATAAGT
1 AAATAATAAAAGAATATAAAT
101872199 AAATAATAAAACGAATA-AAAT
1 AAATAATAAAA-GAATATAAAT
101872220 AAA
1 AAA
101872223 ATAAGTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (21 bp):
AAATAATAAAAGAATATAAAT
Found at i:101884667 original size:15 final size:15
Alignment explanation
Indices: 101884637--101884677 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
101884627 ATGAGTCTTC
101884637 AAAAATAAATAGAAAAT
1 AAAAAT-AA-AGAAAAT
*
101884654 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
101884669 AAAAATAAA
1 AAAAATAAA
101884678 ATGAGTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 15 0.68
16 2 0.09
17 5 0.23
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:101899449 original size:50 final size:51
Alignment explanation
Indices: 101899372--101899500 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
101899362 GACCATGGCA
* *
101899372 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
101899423 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
101899473 ACAAGTGAAAAGTGGTAGATTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
101899501 CTGATTAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:101899514 original size:31 final size:31
Alignment explanation
Indices: 101899476--101899686 Score: 298
Period size: 31 Copynumber: 6.8 Consensus size: 31
101899466 ACAAATGACA
* *
101899476 AGTGAAAAGTGGTAGATTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
101899507 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
101899538 AGTGAAAAGTGGTAGCTTCTGCTGCCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
101899569 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
101899600 AGTGAAAAATGGTAGCTCCGACTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
101899631 AATGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
101899662 AGTGAATAA-TGGTAGCTTCGGCTAC
1 AGTGAA-AAGTGGTAGCTTCGGCTAC
101899687 AAGTGACAAG
Statistics
Matches: 162, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
31 160 0.99
32 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:101899880 original size:49 final size:48
Alignment explanation
Indices: 101899708--101899877 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 48
101899698 AATTTCCGTA
* * * * *
101899708 TAAGACCATATCTGGGATATGGCATCG-GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTA-TGTG
* * * *
101899755 TAAGACCATATCTGGGATATGGCATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTATGTG
*
101899801 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTATGTG
1 TAAGACCATAGCTGGGATATGGCATCGA-ATGTGATATGTGATTATGTG
* *
101899850 TAAGACCATAGCTGGGCTATGACATCGA
1 TAAGACCATAGCTGGGATATGGCATCGA
101899878 TATATGAAGA
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
46 26 0.24
47 37 0.35
48 14 0.13
49 30 0.28
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTATGTG
Found at i:101903793 original size:21 final size:21
Alignment explanation
Indices: 101903767--101903810 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
101903757 ATAGGGTTTG
*
101903767 TTTTCATATACTAGTAAACCA
1 TTTTCAGATACTAGTAAACCA
101903788 TTTTCAGATACTAGTAAACCA
1 TTTTCAGATACTAGTAAACCA
101903809 TT
1 TT
101903811 CATTCATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (21 bp):
TTTTCAGATACTAGTAAACCA
Found at i:101907109 original size:44 final size:44
Alignment explanation
Indices: 101907050--101907139 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
101907040 TGTCAATGAG
101907050 CACTCACCGAAACGAACGTAATAGACCCAACCATGACGGAAGCA
1 CACTCACCGAAACGAACGTAATAGACCCAACCATGACGGAAGCA
101907094 CACTCACCGAAACGAACGTAATAGACCCAACCATGACGGAAGCA
1 CACTCACCGAAACGAACGTAATAGACCCAACCATGACGGAAGCA
101907138 CA
1 CA
101907140 AGCATGCTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.41, C:0.32, G:0.18, T:0.09
Consensus pattern (44 bp):
CACTCACCGAAACGAACGTAATAGACCCAACCATGACGGAAGCA
Found at i:101909278 original size:17 final size:19
Alignment explanation
Indices: 101909244--101909281 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
101909234 ATTATATTTC
101909244 AAAATATTAATTTGAATAA
1 AAAATATTAATTTGAATAA
101909263 AAAATATT-ATTT-AATAA
1 AAAATATTAATTTGAATAA
101909280 AA
1 AA
101909282 TTTAATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 4 0.21
19 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (19 bp):
AAAATATTAATTTGAATAA
Found at i:101911751 original size:14 final size:14
Alignment explanation
Indices: 101911712--101911751 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
101911702 ATAAATATGA
101911712 TAATATATTTTAATT
1 TAAT-TATTTTAATT
* *
101911727 TAATAAATTTAATT
1 TAATTATTTTAATT
101911741 TAATTATTTTA
1 TAATTATTTTA
101911752 TAGATCAACG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATTATTTTAATT
Found at i:101914767 original size:90 final size:90
Alignment explanation
Indices: 101914607--101914873 Score: 329
Period size: 90 Copynumber: 3.0 Consensus size: 90
101914597 GCACAAAAAT
* * * * * * *
101914607 TTATAGGTTAATACACTGTCAGACGGTTGTGAATGCATAACATATTTGTACATGAGAGCTGCCAG
1 TTATAGATTAATACACTGCCAGATGGTTGTGAATGCACAACATATTTGCACATAAGAGCTGCCAA
* *
101914672 AAAATGGGTGGGTGAACCACTAGTG
66 AAAATGGGTGGATGAACCACCAGTG
* * * * * *
101914697 TTGTAGATTAATACATTGCCAGATGGTTGTGAATGTAGAACGTATTTGCATATAAGAGCTGCCAA
1 TTATAGATTAATACACTGCCAGATGGTTGTGAATGCACAACATATTTGCACATAAGAGCTGCCAA
*
101914762 AAAATGGGTTGATGAACCACCAGTG
66 AAAATGGGTGGATGAACCACCAGTG
* * *
101914787 TTATAGGTTAATACACTGCCAGATTGTTGTGAATGCACAACATATTTGCAGATAAGAGCTGCC-A
1 TTATAGATTAATACACTGCCAGATGGTTGTGAATGCACAACATATTTGCACATAAGAGCTGCCAA
* **
101914851 GAAATTTGTGGATGAACCACCAG
66 AAAATGGGTGGATGAACCACCAG
101914874 AGTTGCAAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
89 20 0.13
90 130 0.87
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (90 bp):
TTATAGATTAATACACTGCCAGATGGTTGTGAATGCACAACATATTTGCACATAAGAGCTGCCAA
AAAATGGGTGGATGAACCACCAGTG
Found at i:101915448 original size:11 final size:11
Alignment explanation
Indices: 101915432--101915463 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
101915422 AAAGGCACAT
*
101915432 GGCCATGTTGG
1 GGCCATGTGGG
101915443 GGCCATGTGGG
1 GGCCATGTGGG
101915454 GGCCATGTGG
1 GGCCATGTGG
101915464 TCCACACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.19, G:0.50, T:0.22
Consensus pattern (11 bp):
GGCCATGTGGG
Found at i:101916903 original size:13 final size:13
Alignment explanation
Indices: 101916885--101916923 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
101916875 CTAAATTATA
101916885 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
*
101916898 ATTTTAGTAAAAC
1 ATTTTAGTAAAAT
* *
101916911 CTTTTTGTAAAAT
1 ATTTTAGTAAAAT
101916924 CGAGAGTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:101918558 original size:11 final size:11
Alignment explanation
Indices: 101918544--101918573 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
101918534 GAAAGGAATG
101918544 AGAAACGGGCC
1 AGAAACGGGCC
101918555 AGAAACGGGCC
1 AGAAACGGGCC
*
101918566 AAAAACGG
1 AGAAACGG
101918574 AGTAAATGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.33, T:0.00
Consensus pattern (11 bp):
AGAAACGGGCC
Found at i:101919832 original size:7 final size:6
Alignment explanation
Indices: 101919819--101919870 Score: 59
Period size: 6 Copynumber: 8.0 Consensus size: 6
101919809 ATTTAATTTA
*
101919819 ATTTTT ATTATTT ATTTTT AATTTT ATTTTTT ATTTTT ATTAATTT ATTTTT
1 ATTTTT ATT-TTT ATTTTT ATTTTT A-TTTTT ATTTTT ATT--TTT ATTTTT
101919871 CTTTCTCTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 23 0.57
7 11 0.28
8 6 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:101919837 original size:13 final size:12
Alignment explanation
Indices: 101919819--101919870 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 12
101919809 ATTTAATTTA
101919819 ATTTTTATTATTT
1 ATTTTTATT-TTT
*
101919832 ATTTTTAATTTT
1 ATTTTTATTTTT
101919844 ATTTTTTATTTTT
1 A-TTTTTATTTTT
101919857 ATTAATTTATTTTT
1 ATT--TTTATTTTT
101919871 CTTTCTCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
12 6 0.18
13 19 0.56
14 9 0.26
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:101919842 original size:25 final size:22
Alignment explanation
Indices: 101919810--101919870 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 22
101919800 TTTCTTGCAA
101919810 TTTAATTTAATTTTTATTATTTATT
1 TTTAATTT-ATTTTT-TTATTT-TT
101919835 TTTAATTT-TATTTTTTATTTTT
1 TTTAATTTAT-TTTTTTATTTTT
*
101919857 ATTAATTTATTTTT
1 TTTAATTTATTTTT
101919871 CTTTCTCTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
22 13 0.39
23 8 0.24
24 4 0.12
25 8 0.24
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTAATTTATTTTTTTATTTTT
Found at i:101919843 original size:19 final size:20
Alignment explanation
Indices: 101919815--101919857 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
101919805 TGCAATTTAA
101919815 TTTAATTTTTATTATTTATT
1 TTTAATTTTTATTATTTATT
*
101919835 TTTAA-TTTTATTTTTTATT
1 TTTAATTTTTATTATTTATT
101919854 TTTA
1 TTTA
101919858 TTAATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTAATTTTTATTATTTATT
Found at i:101926730 original size:46 final size:46
Alignment explanation
Indices: 101926680--101926851 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
101926670 TGGTTGAGCA
*
101926680 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
101926726 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
101926773 TCCGAACTCGTTGAGTTGAGT-CGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
101926818 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101926852 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 23 0.22
46 47 0.45
47 24 0.23
49 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:101926835 original size:92 final size:93
Alignment explanation
Indices: 101926677--101926846 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
101926667 GGATGGTTGA
* *
101926677 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
101926742 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
101926770 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
101926834 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
101926847 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 48 0.67
93 24 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101927113 original size:19 final size:20
Alignment explanation
Indices: 101927076--101927113 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
101927066 ATAAGGTGGT
101927076 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
101927096 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
101927114 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:101933456 original size:17 final size:18
Alignment explanation
Indices: 101933424--101933458 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
101933414 TTCCAAGCCC
*
101933424 CGTTTTTAATGTTCTTTA
1 CGTTTTTAATGATCTTTA
101933442 CGTTTTTAA-GATCTTTA
1 CGTTTTTAATGATCTTTA
101933459 AAGCATGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
CGTTTTTAATGATCTTTA
Found at i:101935046 original size:38 final size:38
Alignment explanation
Indices: 101934963--101935102 Score: 210
Period size: 38 Copynumber: 3.7 Consensus size: 38
101934953 CCGCACAAAG
* * * *
101934963 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGC-CAATT
101935003 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
*
101935041 GCCTTCGGGCTTAGCCCGGATATCATAACTC-ACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
101935078 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
101935103 CTCGAACATT
Statistics
Matches: 95, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
37 30 0.32
38 36 0.38
39 20 0.21
40 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
Found at i:101943081 original size:39 final size:39
Alignment explanation
Indices: 101942914--101943095 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
101942904 TCGTTCAAAC
* * ** * **
101942914 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
101942954 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
101942994 GCCTTCGGGCTTAGCCCGGATATCATAACTCGC-CAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
101943032 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
101943071 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
101943096 CTCGAACATT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:101945851 original size:80 final size:80
Alignment explanation
Indices: 101945718--101945885 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
101945708 TGAATGATAC
* ** *
101945718 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
101945782 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
101945798 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAA-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
101945862 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101945878 CC-GGCTAA
1 CCGGGCTAA
101945886 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 8 0.11
80 65 0.86
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:101945880 original size:40 final size:40
Alignment explanation
Indices: 101945718--101945885 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
101945708 TGAATGATAC
* * * *
101945718 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
101945758 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
101945798 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
101945838 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
101945878 CC-GGCTAA
1 CCGGGCTAA
101945886 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 8 0.08
40 91 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:101951497 original size:27 final size:26
Alignment explanation
Indices: 101951449--101951508 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
101951439 GCGAGGCTGC
*
101951449 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
101951476 CAGATATTGTGCCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
101951502 CATATAT
1 CAGATAT
101951509 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:101951510 original size:2 final size:2
Alignment explanation
Indices: 101951503--101951530 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
101951493 CCACCAGAAC
101951503 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101951531 GTGGATTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101951580 original size:26 final size:27
Alignment explanation
Indices: 101951551--101951602 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
101951541 GCGAGGTTGC
*
101951551 CAGATAT-TGTGACGAAGTCACCAGAA
1 CAGATATATGTGACGAAGCCACCAGAA
* *
101951577 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATATATGTGACGAAGCCACCAGA
101951603 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (27 bp):
CAGATATATGTGACGAAGCCACCAGAA
Found at i:101952229 original size:26 final size:27
Alignment explanation
Indices: 101952200--101952253 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
101952190 TCACACAAGT
*
101952200 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
101952226 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
101952253 T
1 T
101952254 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:101952284 original size:27 final size:27
Alignment explanation
Indices: 101952254--101952398 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
101952244 GGGGCAAAAT
* * * *
101952254 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
101952281 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
101952308 GGTAATTCTATCCTATAGGGGT-TTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
101952334 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
101952361 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
101952388 AATAATTCTAC
1 GGTAATTCTAC
101952399 AACTTATCCA
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.22
27 82 0.78
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:101952347 original size:53 final size:54
Alignment explanation
Indices: 101952254--101952398 Score: 202
Period size: 53 Copynumber: 2.7 Consensus size: 54
101952244 GGGGCAAAAT
* * * * **
101952254 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* * *
101952308 GGTAATTCTATCCTATAGGGGT-TTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
101952361 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
101952399 AACTTATCCA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 49 0.61
54 31 0.39
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
Found at i:101955843 original size:22 final size:22
Alignment explanation
Indices: 101955818--101955875 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
101955808 CATGAAGCAA
101955818 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
101955840 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
* *
101955862 TCCCATACCTCCAC
1 CCCCATACCCCCAC
101955876 AGTCCTTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.55, G:0.03, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:101970334 original size:72 final size:73
Alignment explanation
Indices: 101970213--101970364 Score: 195
Period size: 72 Copynumber: 2.1 Consensus size: 73
101970203 GAGTTAAGCC
*
101970213 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATCGCTAGAGGTAAGTTGAGCCTCGGG-GCATG
1 TTTTCAATTTTTGTTTTTCAAAATCAACTCATATCGCTAGAGGTAAGTTGAGCCTCGGGCACATG
*
101970276 CTGAGGTA
66 CCGAGGTA
** * *
101970284 TTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTG-TGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTTTGT-TTTTCAAAATCAACTCATATCGCT-AGAGGTAAGTTGAGCCTCGGG-CAC
101970347 ATGCCGAGGTA
63 ATGCCGAGGTA
101970358 TTTTCAA
1 TTTTCAA
101970365 AATCTGTTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
71 5 0.07
72 43 0.61
73 4 0.06
74 18 0.26
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (73 bp):
TTTTCAATTTTTGTTTTTCAAAATCAACTCATATCGCTAGAGGTAAGTTGAGCCTCGGGCACATG
CCGAGGTA
Found at i:101971224 original size:22 final size:22
Alignment explanation
Indices: 101971199--101971256 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
101971189 CATGAAGCAA
101971199 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
101971221 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
* *
101971243 TCCCATACCTCCAC
1 CCCCATACCCCCAC
101971257 AGTCCTCGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.55, G:0.03, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:101972717 original size:2 final size:2
Alignment explanation
Indices: 101972710--101972746 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
101972700 GGTTATGTGT
101972710 TA TA TA TA T- TA GTA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T
101972747 TAGTATTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:101980046 original size:64 final size:66
Alignment explanation
Indices: 101979941--101980126 Score: 198
Period size: 67 Copynumber: 2.8 Consensus size: 66
101979931 CATCATGTGT
* * * *
101979941 ACAAGAGAGCTACAAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTA-TG-CGTACACCA
1 ACAAGAGAGCTAC--GAGA-TA-AATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCA
101980004 TGTAG
62 TGTAG
* * ** *
101980009 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCCTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTA-GTGAAGGACACCATGT
101980074 AG
65 AG
* *
101980076 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACT-AGTG
101980127 TTCACCATGT
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
64 24 0.24
65 2 0.02
66 26 0.27
67 33 0.34
68 13 0.13
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCATGTA
G
Found at i:101984286 original size:14 final size:14
Alignment explanation
Indices: 101984267--101984293 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101984257 TATCAAAATA
101984267 ATAATCAAGAACAC
1 ATAATCAAGAACAC
101984281 ATAATCAAGAACA
1 ATAATCAAGAACA
101984294 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.19, G:0.07, T:0.15
Consensus pattern (14 bp):
ATAATCAAGAACAC
Found at i:101985105 original size:23 final size:23
Alignment explanation
Indices: 101985075--101985119 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
101985065 GTGGCTTAAG
101985075 TTAGTATACCCTACATGTTTGGT
1 TTAGTATACCCTACATGTTTGGT
101985098 TTAGTATACCCTACATGTTTGG
1 TTAGTATACCCTACATGTTTGG
101985120 CATGGCCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (23 bp):
TTAGTATACCCTACATGTTTGGT
Found at i:101988202 original size:2 final size:2
Alignment explanation
Indices: 101988195--101988223 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
101988185 GAGACTAGTC
101988195 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
101988224 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:101992066 original size:15 final size:15
Alignment explanation
Indices: 101992034--101992079 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
101992024 AATTTAGTTG
*
101992034 ATAAAGAAAAATAAA
1 ATAAACAAAAATAAA
* *
101992049 ATAAACAAATATATA
1 ATAAACAAAAATAAA
*
101992064 ATAAATAAAAATAAA
1 ATAAACAAAAATAAA
101992079 A
1 A
101992080 ATAGAATTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (15 bp):
ATAAACAAAAATAAA
Found at i:101994700 original size:2 final size:2
Alignment explanation
Indices: 101994687--101994728 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
101994677 AATTACACCA
*
101994687 AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
101994729 CTAACATTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:101995147 original size:34 final size:34
Alignment explanation
Indices: 101995083--101995147 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
101995073 AAAGGAAAAC
**
101995083 AGAAAACCATAAAAAATAATCAAATAACAATCTA
1 AGAAAACCATAAAAAATAAAAAAATAACAATCTA
* *
101995117 AGAAAATCATAAAAAATAAAAAAATTACAAT
1 AGAAAACCATAAAAAATAAAAAAATAACAAT
101995148 AATTTTTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.68, C:0.11, G:0.03, T:0.18
Consensus pattern (34 bp):
AGAAAACCATAAAAAATAAAAAAATAACAATCTA
Found at i:102001958 original size:3 final size:3
Alignment explanation
Indices: 102001950--102001987 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
102001940 CTCCGCCTTT
102001950 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
102001988 GGAGGATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Done.