Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 338 of 378
Found at i:102528496 original size:22 final size:22
Alignment explanation
Indices: 102528427--102528501 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
102528417 AATAAAATTG
* *
102528427 AAATGAAAATAAAAATCAAAAGAA
1 AAATAAAAAT-AAAA-CAAAACAA
*
102528451 AAATAAAAATAAAAGAAAACAA
1 AAATAAAAATAAAACAAAACAA
*
102528473 AAATAAAAATAAGACTAAATA-AA
1 AAATAAAAATAAAAC-AAA-ACAA
102528496 AAATAA
1 AAATAA
102528502 GAGGATTCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
22 19 0.43
23 15 0.34
24 10 0.23
ACGTcount: A:0.77, C:0.04, G:0.05, T:0.13
Consensus pattern (22 bp):
AAATAAAAATAAAACAAAACAA
Found at i:102531831 original size:26 final size:26
Alignment explanation
Indices: 102531795--102531904 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
102531785 CATGTAATTC
102531795 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
102531821 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
102531847 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
102531873 TTGTCATGGAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
102531899 TTATCA
1 TTATCA
102531905 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102533143 original size:19 final size:20
Alignment explanation
Indices: 102533105--102533144 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
102533095 ACCCCGCGTC
*
102533105 ACACGCCCGTGTTTGCCACCA
1 ACACGCCCGTG-TCGCCACCA
102533126 ACACGCCCGTG-CGCCACCA
1 ACACGCCCGTGTCGCCACCA
102533145 TACATCAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.47, G:0.20, T:0.12
Consensus pattern (20 bp):
ACACGCCCGTGTCGCCACCA
Found at i:102533242 original size:11 final size:11
Alignment explanation
Indices: 102533211--102533242 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
102533201 TTTTGTTTTA
*
102533211 CATACATCAAC
1 CATACATCAGC
102533222 CATACATCAGC
1 CATACATCAGC
102533233 CATACATCAG
1 CATACATCAG
102533243 TCTTAGATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.34, G:0.06, T:0.19
Consensus pattern (11 bp):
CATACATCAGC
Found at i:102541055 original size:29 final size:29
Alignment explanation
Indices: 102540988--102541080 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
102540978 CTGTACAAAA
* * *
102540988 AAAATCCATCTCGTCAAAATAATTTTTTC
1 AAAACCCATCTCGTCAAATTTATTTTTTC
*
102541017 AAAACGCATCTCGTCAAATTTATTTTTTC
1 AAAACCCATCTCGTCAAATTTATTTTTTC
* * * *
102541046 ATATCCCATCTTGTCAAATTTATTTCTTCC
1 AAAACCCATCTCGTCAAATTTATTT-TTTC
102541076 AAAAC
1 AAAAC
102541081 AATATTTACC
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 46 0.88
30 6 0.12
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAACCCATCTCGTCAAATTTATTTTTTC
Found at i:102541505 original size:12 final size:13
Alignment explanation
Indices: 102541480--102541512 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
102541470 ACGTGTTCTG
102541480 AAATAAATATAAA
1 AAATAAATATAAA
102541493 AAATAAA-ATAAA
1 AAATAAATATAAA
102541505 AGAATAAA
1 A-AATAAA
102541513 GAAATTGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (13 bp):
AAATAAATATAAA
Found at i:102542219 original size:88 final size:89
Alignment explanation
Indices: 102542053--102542219 Score: 221
Period size: 88 Copynumber: 1.9 Consensus size: 89
102542043 CCTAATTTTT
* * * * *
102542053 TTTTTAAAAAAAAGTAATTAAGTCCCCCCTTTTTTTTTTGCACTCAATTGGATACTTGAATTTCT
1 TTTTTAAAAAAAAGCAATTAAGTCCCCAC-TTTTTTTTGGCACTCAATTGGATACTTGAATTGCA
*
102542118 AAATGCATTAAAAATACCCTCAAAC
65 AAATGCATCAAAAATACCCTCAAAC
* * *
102542143 TTTTTCAAAAAAAGCAATTAAGTCCCTAC-TTTTTTTGGCACTTAATTGGATACTTGAATTGGCA
1 TTTTTAAAAAAAAGCAATTAAGTCCCCACTTTTTTTTGGCACTCAATTGGATACTTGAATT-GCA
102542207 AAATGCA-CAAAAA
65 AAATGCATCAAAAA
102542220 AGACCCATTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 34 0.51
89 8 0.12
90 25 0.37
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (89 bp):
TTTTTAAAAAAAAGCAATTAAGTCCCCACTTTTTTTTGGCACTCAATTGGATACTTGAATTGCAA
AATGCATCAAAAATACCCTCAAAC
Found at i:102542384 original size:10 final size:9
Alignment explanation
Indices: 102542351--102542482 Score: 54
Period size: 10 Copynumber: 13.8 Consensus size: 9
102542341 ATTTATAAAA
*
102542351 ATAAAAATCA
1 ATAAAAAT-T
102542361 ATAAAAATT
1 ATAAAAATT
*
102542370 ATAAAAGTT
1 ATAAAAATT
**
102542379 ATTAAATTTT
1 A-TAAAAATT
102542389 AATAAAGAA-T
1 -ATAAA-AATT
102542399 ATAAAAA-T
1 ATAAAAATT
*
102542407 ATTTAAAATT
1 A-TAAAAATT
*
102542417 AGAAAATATT
1 ATAAAA-ATT
102542427 ATAAAAA-T
1 ATAAAAATT
*
102542435 AGTATGAAATT
1 A-TA-AAAATT
102542446 ATAAAAAAATT
1 AT--AAAAATT
* *
102542457 GTAAAATTTT
1 ATAAAA-ATT
*
102542467 ATAAAAATC
1 ATAAAAATT
102542476 ATAAAAA
1 ATAAAAA
102542483 AAATTGTAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 25
0.69 0.13 0.19
Matches are distributed among these distances:
8 6 0.06
9 37 0.40
10 40 0.43
11 9 0.10
12 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:102542480 original size:19 final size:19
Alignment explanation
Indices: 102542351--102542481 Score: 74
Period size: 19 Copynumber: 6.8 Consensus size: 19
102542341 ATTTATAAAA
*
102542351 ATAAAAATCAATAAAA-ATT
1 ATAAAAAT-TATAAAATATT
* * *
102542370 ATAAAAGTTATTAAATTTT
1 ATAAAAATTATAAAATATT
102542389 AATAAAGAA-TATAAAAATATT
1 -ATAAA-AATTAT-AAAATATT
*
102542410 -T-AAAATTAGAAAATATT
1 ATAAAAATTATAAAATATT
*
102542427 ATAAAAATAGTATGAAAT-TAT
1 ATAAAAAT--TATAAAATAT-T
* * *
102542448 AAAAAAATTGTAAAATTTT
1 ATAAAAATTATAAAATATT
*
102542467 ATAAAAATCATAAAA
1 ATAAAAATTATAAAA
102542482 AAAATTGTAA
Statistics
Matches: 85, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
17 10 0.12
18 10 0.12
19 34 0.40
20 10 0.12
21 21 0.25
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAAAAATTATAAAATATT
Found at i:102542717 original size:20 final size:19
Alignment explanation
Indices: 102542692--102542784 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
102542682 TTTAGTAGAT
102542692 AATTTTTATAATTTTTTAC
1 AATTTTTATAATTTTTTAC
102542711 GAA-TTTTA-AATTTCTTTAC
1 -AATTTTTATAATTT-TTTAC
*
102542730 ATTTTTTATAATTTTCTTAC
1 AATTTTTATAATTTT-TTAC
* ** *
102542750 AA-CTTTATAAAATTTTAT
1 AATTTTTATAATTTTTTAC
102542768 AA-TTTTATAAATTTTTT
1 AATTTTTAT-AATTTTTT
102542785 TCTATATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
18 16 0.27
19 31 0.53
20 12 0.20
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (19 bp):
AATTTTTATAATTTTTTAC
Found at i:102542831 original size:32 final size:31
Alignment explanation
Indices: 102542753--102542831 Score: 83
Period size: 30 Copynumber: 2.6 Consensus size: 31
102542743 TTCTTACAAC
* * *
102542753 TTTATAAAATTTTATA-ATTTTATAAATTTT
1 TTTATATATTTTTATATATATTATAAATTTT
* *
102542783 TTTCTATATTTCTATATATATTATAAATTTT
1 TTTATATATTTTTATATATATTATAAATTTT
102542814 TTTATA-ATTCTTT-TATAT
1 TTTATATATT-TTTATATAT
102542832 TTTTAATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 20 0.50
31 20 0.50
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (31 bp):
TTTATATATTTTTATATATATTATAAATTTT
Found at i:102559514 original size:14 final size:14
Alignment explanation
Indices: 102559489--102559523 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
102559479 ATATCCAAAC
*
102559489 AATAACAACATAAT
1 AATAATAACATAAT
*
102559503 AGTAATAACATAAT
1 AATAATAACATAAT
102559517 AATAATA
1 AATAATA
102559524 TGGTAGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.26
Consensus pattern (14 bp):
AATAATAACATAAT
Found at i:102559579 original size:21 final size:22
Alignment explanation
Indices: 102559542--102559582 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
102559532 AAATAAAGAG
*
102559542 AAAACAACAAGAAAATAGCATT
1 AAAAAAACAAGAAAATAGCATT
102559564 AAAAAAACAA-AAAATAGCA
1 AAAAAAACAAGAAAATAGCA
102559583 GTTTTTTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.71, C:0.12, G:0.07, T:0.10
Consensus pattern (22 bp):
AAAAAAACAAGAAAATAGCATT
Found at i:102562187 original size:16 final size:17
Alignment explanation
Indices: 102562156--102562188 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
102562146 AGAGTACAAA
102562156 AACTTTAAACATATTTT
1 AACTTTAAACATATTTT
*
102562173 AACTTTCAA-ATATTTT
1 AACTTTAAACATATTTT
102562189 CTTAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
AACTTTAAACATATTTT
Found at i:102563480 original size:2 final size:2
Alignment explanation
Indices: 102563473--102563510 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
102563463 CAAATTCACC
102563473 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102563511 TACTACTAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102564228 original size:20 final size:21
Alignment explanation
Indices: 102564189--102564229 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
102564179 AATAATGACT
* *
102564189 AAACTGGAAACTTTTTCAAAA
1 AAACTAGAAACTTTTGCAAAA
102564210 AAACTAGAAA-TTTTGCAAAA
1 AAACTAGAAACTTTTGCAAAA
102564230 CAGGGGTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (21 bp):
AAACTAGAAACTTTTGCAAAA
Found at i:102574918 original size:33 final size:33
Alignment explanation
Indices: 102574881--102574959 Score: 140
Period size: 33 Copynumber: 2.4 Consensus size: 33
102574871 ATTCTATCTA
102574881 CTGTCCAGCAACCAAACACTCACATTCCAACTC
1 CTGTCCAGCAACCAAACACTCACATTCCAACTC
*
102574914 CTGTCCAGCAACCAAACACTCACATTCCAGCTC
1 CTGTCCAGCAACCAAACACTCACATTCCAACTC
*
102574947 CTATCCAGCAACC
1 CTGTCCAGCAACC
102574960 TGAAACAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.32, C:0.43, G:0.08, T:0.18
Consensus pattern (33 bp):
CTGTCCAGCAACCAAACACTCACATTCCAACTC
Found at i:102593082 original size:20 final size:19
Alignment explanation
Indices: 102593054--102593151 Score: 61
Period size: 20 Copynumber: 4.9 Consensus size: 19
102593044 TTCATTATTG
*
102593054 TTTTGAATCAATTCTTTACT
1 TTTTAAATCAATTCTTTA-T
** * *
102593074 TTTTAAATCGGTTGTATAT
1 TTTTAAATCAATTCTTTAT
**
102593093 TGTTTTGATCAATTCTTTAT
1 T-TTTAAATCAATTCTTTAT
* * *
102593113 TGTTTGAATCGATTCATTATT
1 T-TTTAAATCAATTCTTTA-T
102593134 GTTTTAAATCAATTCTTT
1 -TTTTAAATCAATTCTTT
102593152 TCTGTTTAAC
Statistics
Matches: 57, Mismatches: 18, Indels: 5
0.71 0.22 0.06
Matches are distributed among these distances:
19 2 0.04
20 40 0.70
21 14 0.25
22 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.55
Consensus pattern (19 bp):
TTTTAAATCAATTCTTTAT
Found at i:102593110 original size:40 final size:40
Alignment explanation
Indices: 102593044--102593169 Score: 139
Period size: 41 Copynumber: 3.1 Consensus size: 40
102593034 CAATCTTAGT
*
102593044 TTCATTATTGTTTTGAATCAATTCTTTACTTTTTAAATCGG
1 TTCATTATTGTTTTG-ATCAATTCTTTACTTTTTAAATCGA
* *
102593085 TT-GTATATTGTTTTGATCAATTCTTTA-TTGTTTGAATCGA
1 TTCAT-TATTGTTTTGATCAATTCTTTACTT-TTTAAATCGA
* * * *
102593125 TTCATTATTGTTTTAAATCAATTCTTTTCTGTTTAACTCGA
1 TTCATTATTGTTTT-GATCAATTCTTTACTTTTTAAATCGA
102593166 TTCA
1 TTCA
102593170 AACTCTAACA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
39 2 0.03
40 32 0.45
41 36 0.51
42 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.54
Consensus pattern (40 bp):
TTCATTATTGTTTTGATCAATTCTTTACTTTTTAAATCGA
Found at i:102593817 original size:9 final size:9
Alignment explanation
Indices: 102593803--102593870 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
102593793 ATAAATATAA
102593803 AATTAACCG
1 AATTAACCG
*
102593812 AATTAATCG
1 AATTAACCG
102593821 AATTAACCG
1 AATTAACCG
*
102593830 AATTATCCG
1 AATTAACCG
* *
102593839 AATTACCCA
1 AATTAACCG
102593848 AATTAACCG
1 AATTAACCG
102593857 AATTAACCG
1 AATTAACCG
102593866 AATTA
1 AATTA
102593871 TTTGTATAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:102593902 original size:6 final size:6
Alignment explanation
Indices: 102593891--102593943 Score: 70
Period size: 6 Copynumber: 8.5 Consensus size: 6
102593881 ATTATATGTT
* *
102593891 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA
102593941 TTT
1 TTT
102593944 ATTAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 33 0.80
7 7 0.17
8 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:102594207 original size:12 final size:14
Alignment explanation
Indices: 102594185--102594218 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
102594175 TTACCGAATT
102594185 AATTCGATTAACC-
1 AATTCGATTAACCG
102594198 AATT-GATTAACCG
1 AATTCGATTAACCG
102594211 AATTCGAT
1 AATTCGAT
102594219 CGGTTAATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.42
13 8 0.42
14 3 0.16
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (14 bp):
AATTCGATTAACCG
Found at i:102594314 original size:13 final size:13
Alignment explanation
Indices: 102594296--102594328 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
102594286 TTAACTTGGA
102594296 CCACACGGCTAAG
1 CCACACGGCTAAG
102594309 CCACACGGCTAAG
1 CCACACGGCTAAG
102594322 CCACACG
1 CCACACG
102594329 CCTGTGTGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.30, C:0.42, G:0.21, T:0.06
Consensus pattern (13 bp):
CCACACGGCTAAG
Found at i:102596212 original size:29 final size:30
Alignment explanation
Indices: 102596170--102596231 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
102596160 ACTTAACAAG
102596170 CAAATGCCTCTAAAATAATAA-AAAAATAA
1 CAAATGCCTCTAAAATAATAACAAAAATAA
* *
102596199 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATAA
102596229 CAA
1 CAA
102596232 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAAATAA
Found at i:102599904 original size:26 final size:26
Alignment explanation
Indices: 102599871--102599927 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
102599861 TCCCTAATAC
102599871 TAAAATTATTCAATATTGACAACACT
1 TAAAATTATTCAATATTGACAACACT
102599897 TAAAATTATTCAATATTGACAACACT
1 TAAAATTATTCAATATTGACAACACT
102599923 TAAAA
1 TAAAA
102599928 ACTTAATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (26 bp):
TAAAATTATTCAATATTGACAACACT
Found at i:102600651 original size:16 final size:15
Alignment explanation
Indices: 102600630--102600677 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
102600620 GATGTGAATA
102600630 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
102600646 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
102600661 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
102600677 A
1 A
102600678 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:102600660 original size:8 final size:8
Alignment explanation
Indices: 102600626--102600677 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
102600616 CAATGATGTG
*
102600626 AATAATAA
1 AATATTAA
102600634 AATATATAA
1 AATAT-TAA
102600643 AATA-TAA
1 AATATTAA
102600650 AATATTAA
1 AATATTAA
*
102600658 AATATCAA
1 AATATTAA
*
102600666 AATATTAG
1 AATATTAA
102600674 AATA
1 AATA
102600678 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:102600677 original size:24 final size:24
Alignment explanation
Indices: 102600625--102600681 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
102600615 ACAATGATGT
*
102600625 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
102600649 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
102600673 GAATAATAA
1 GAATAATAA
102600682 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:102600858 original size:25 final size:23
Alignment explanation
Indices: 102600830--102600894 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 23
102600820 CGTGATAATA
*
102600830 TTAAGAATATGTACATAATATAGTG
1 TTAAGAATATATACATAATATA--G
*
102600855 TTAAAAATATATACATAATATAG
1 TTAAGAATATATACATAATATAG
102600878 TTAAG-ATATATACATAA
1 TTAAGAATATATACATAA
102600895 GATAACATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 12 0.32
23 5 0.14
25 20 0.54
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (23 bp):
TTAAGAATATATACATAATATAG
Found at i:102600942 original size:16 final size:16
Alignment explanation
Indices: 102600913--102600975 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
102600903 GTAGAAAAAA
102600913 AAAT-ATATATATATAT
1 AAATAATATA-ATATAT
102600929 AAATAATATAATAT-T
1 AAATAATATAATATAT
*
102600944 AAAGATATATAA-ATA-
1 AAATA-ATATAATATAT
* *
102600959 AAATAGTATAAAATAT
1 AAATAATATAATATAT
102600975 A
1 A
102600976 TATATATACG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.13
15 14 0.36
16 15 0.38
17 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATAATATAATATAT
Found at i:102600952 original size:25 final size:25
Alignment explanation
Indices: 102600923--102601058 Score: 88
Period size: 25 Copynumber: 5.6 Consensus size: 25
102600913 AAATATATAT
102600923 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
102600948 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
102600973 ATATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-A--TAATATAATATTAAAG
** *
102601001 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
102601023 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
102601046 AAATAT-AATAATA
1 ATATATAAATAATA
102601059 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 28 0.33
26 1 0.01
27 6 0.07
28 1 0.01
29 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:102601012 original size:23 final size:24
Alignment explanation
Indices: 102600914--102601015 Score: 77
Period size: 23 Copynumber: 4.2 Consensus size: 24
102600904 TAGAAAAAAA
*
102600914 AATATATATATATATAAATAATA--T
1 AATATA-AAATATATAAAT-ATACCT
**
102600938 AATATTAAAGATATATAAATA-AAAT
1 AATA-TAAA-ATATATAAATATACCT
* * *
102600963 AGTATAAAATATATATATATACGT
1 AATATAAAATATATAAATATACCT
*
102600987 AATATAAAATTTA-AAATATACCT
1 AATATAAAATATATAAATATACCT
102601010 AATATA
1 AATATA
102601016 TTAAAAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
23 25 0.39
24 23 0.36
25 16 0.25
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (24 bp):
AATATAAAATATATAAATATACCT
Found at i:102601580 original size:30 final size:30
Alignment explanation
Indices: 102601544--102601625 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
102601534 CAAGTGGTGG
102601544 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
102601574 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
*
102601604 TGGAGCAAGTGTGGCTAGTGGA
1 TGGAGCAAGTGTGGTTAGTGGA
102601626 TTTGGTGGTG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.26, C:0.05, G:0.44, T:0.26
Consensus pattern (30 bp):
TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
Found at i:102601653 original size:60 final size:60
Alignment explanation
Indices: 102601544--102601657 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 60
102601534 CAAGTGGTGG
* * * *
102601544 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGTATGGCTAGTGGAGTAGGTAA
* * **
102601604 TGGAGCAAGTGTGGCTAGTGGATTTGGTGGTGGA-AAATGTATGGCTAGTGGAGT
1 TGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAA-GTATGGCTAGTGGAGT
102601658 TGGTGGTGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
59 2 0.04
60 43 0.96
ACGTcount: A:0.25, C:0.04, G:0.43, T:0.28
Consensus pattern (60 bp):
TGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGTATGGCTAGTGGAGTAGGTAA
Found at i:102601679 original size:30 final size:31
Alignment explanation
Indices: 102601614--102601680 Score: 102
Period size: 30 Copynumber: 2.2 Consensus size: 31
102601604 TGGAGCAAGT
* *
102601614 GTGGCTAGTGGATTTGGTGGTGGAAAATGTA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAATGGA
102601645 -TGGCTAGTGGAGTTGGTGGTGGAAAA-GGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAATGGA
102601674 GTGGCTA
1 GTGGCTA
102601681 AAATTGGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.22, C:0.04, G:0.45, T:0.28
Consensus pattern (31 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAATGGA
Found at i:102602390 original size:15 final size:15
Alignment explanation
Indices: 102602357--102602404 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
102602347 TTGATTTTTT
* *
102602357 AAAAAGCAGAATTTG
1 AAAAAGCAAAAATTG
*
102602372 -AAAAGCATAAATTG
1 AAAAAGCAAAAATTG
*
102602386 AAAAAACAAAAATTG
1 AAAAAGCAAAAATTG
102602401 AAAA
1 AAAA
102602405 TACCTCAGCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (15 bp):
AAAAAGCAAAAATTG
Found at i:102602520 original size:89 final size:89
Alignment explanation
Indices: 102602368--102602596 Score: 386
Period size: 89 Copynumber: 2.6 Consensus size: 89
102602358 AAAAGCAGAA
* * *
102602368 TTTGAAAAGCATAAATTGAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
1 TTTGAAGAGCAGAAATTG-AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
102602433 ACCTCTCGCAATATAAGTTGATTTT
65 ACCTCTCGCAATATAAGTTGATTTT
* * *
102602458 TTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
102602523 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATAAGTTGATTTT
102602547 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCC
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCC
102602597 TCAAAACAGA
Statistics
Matches: 129, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 113 0.88
90 16 0.12
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (89 bp):
TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
CCTCTCGCAATATAAGTTGATTTT
Found at i:102602573 original size:14 final size:14
Alignment explanation
Indices: 102602556--102602582 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102602546 TTTTGAAGAG
102602556 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
102602570 CAGAAATTGAAAA
1 CAGAAATTGAAAA
102602583 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:102602608 original size:33 final size:33
Alignment explanation
Indices: 102602566--102602629 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
102602556 CAGAAATTGA
102602566 AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
102602599 AAAACAGAAATTGAAAATACCTCAGCGTGCC
1 AAAACAGAAATTGAAAATACCTCAGCGTGCC
102602630 CTGAGGCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (33 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
Found at i:102602695 original size:14 final size:14
Alignment explanation
Indices: 102602678--102602704 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102602668 TTTTGAAGAG
102602678 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
102602692 CAGAAATTGAAAA
1 CAGAAATTGAAAA
102602705 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:102602698 original size:122 final size:122
Alignment explanation
Indices: 102602481--102602838 Score: 680
Period size: 122 Copynumber: 2.9 Consensus size: 122
102602471 AATTGGAAAG
*
102602481 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
102602546 TTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTCAAAA
66 TTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTCAAAA
102602603 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
102602668 TTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTCAAAA
66 TTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTCAAAA
102602725 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* *
102602790 TTTTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGT
65 TTTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGT
102602839 ACCCTGAGGC
Statistics
Matches: 232, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
122 183 0.79
123 49 0.21
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (122 bp):
CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCTCAAAA
Found at i:102602730 original size:33 final size:33
Alignment explanation
Indices: 102602688--102602751 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
102602678 CAGAAATTGA
102602688 AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
102602721 AAAACAGAAATTGAAAATACCTCAGCGTGCC
1 AAAACAGAAATTGAAAATACCTCAGCGTGCC
102602752 CTGAGGCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (33 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCTC
Found at i:102602832 original size:90 final size:90
Alignment explanation
Indices: 102602721--102603145 Score: 755
Period size: 89 Copynumber: 4.7 Consensus size: 90
102602711 AGCGTGCCTC
102602721 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
102602786 ATTTTTTTTGAAGAGCAGAAATTGA
66 ATTTTTTTTGAAGAGCAGAAATTGA
* * *
102602811 AAAACATAAATTGAAATTACCTCAGCGTACCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
102602876 A-TTTTTTTGAAGAACAGAAATTGA
66 ATTTTTTTTGAAGAGCAGAAATTGA
* * *
102602900 AAAACAGAAATTGAAAATACCTCAGCGCGCCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
102602965 A-TTTTTTTGAAGAGCAGAAATTGA
66 ATTTTTTTTGAAGAGCAGAAATTGA
102602989 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
102603054 ATTTTTTTTGAAGAGCAGAAATTGA
66 ATTTTTTTTGAAGAGCAGAAATTGA
* *
102603079 AAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
102603144 AT
66 AT
102603146 CTTTGGAACA
Statistics
Matches: 318, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
89 167 0.53
90 151 0.47
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTGAAGAGCAGAAATTGA
Found at i:102602905 original size:14 final size:14
Alignment explanation
Indices: 102602882--102602916 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
102602872 GTTGATTTTT
*
102602882 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
102602896 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
102602910 TTGAAAA
1 TTGAAAA
102602917 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:102602996 original size:14 final size:14
Alignment explanation
Indices: 102602979--102603005 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102602969 TTTTGAAGAG
102602979 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
102602993 CAGAAATTGAAAA
1 CAGAAATTGAAAA
102603006 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:102612912 original size:16 final size:15
Alignment explanation
Indices: 102612891--102612938 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
102612881 GATGTGAATA
102612891 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
102612907 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
102612922 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
102612938 A
1 A
102612939 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:102612921 original size:8 final size:8
Alignment explanation
Indices: 102612887--102612938 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
102612877 CAATGATGTG
*
102612887 AATAATAA
1 AATATTAA
102612895 AATATATAA
1 AATAT-TAA
102612904 AATA-TAA
1 AATATTAA
102612911 AATATTAA
1 AATATTAA
*
102612919 AATATCAA
1 AATATTAA
*
102612927 AATATTAG
1 AATATTAA
102612935 AATA
1 AATA
102612939 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:102612938 original size:24 final size:24
Alignment explanation
Indices: 102612886--102612942 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
102612876 ACAATGATGT
*
102612886 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
102612910 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
102612934 GAATAATAA
1 GAATAATAA
102612943 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:102613101 original size:22 final size:19
Alignment explanation
Indices: 102613051--102613108 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
102613041 ATACTACATC
102613051 AATATGTACATATATAAAA
1 AATATGTACATATATAAAA
** *
102613070 AATAAATACATGATAATATTAA
1 AATATGTACAT-AT-ATA-AAA
102613092 AATATGTACATAATATA
1 AATATGTACAT-ATATA
102613109 GTGTTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 6 0.20
22 13 0.43
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AATATGTACATATATAAAA
Found at i:102613146 original size:22 final size:21
Alignment explanation
Indices: 102613069--102613149 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 21
102613059 CATATATAAA
* *
102613069 AAATAAATACATGATAATA-TT
1 AAATATATACATAAT-ATAGTT
*
102613090 AAAATATGTACATAATATAGTGTT
1 -AAATATATACATAATATA--GTT
*
102613114 AAAAATATACATAATATAGTT
1 AAATATATACATAATATAGTT
102613135 AAGATATATACATAA
1 AA-ATATATACATAA
102613150 GATAACATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
21 8 0.16
22 23 0.47
23 16 0.33
24 2 0.04
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
AAATATATACATAATATAGTT
Found at i:102613194 original size:16 final size:16
Alignment explanation
Indices: 102613165--102613227 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
102613155 CATGTAGAAA
102613165 AAAT-ATATATATATAT
1 AAATAATATA-ATATAT
102613181 AAATAATATAATAT-T
1 AAATAATATAATATAT
*
102613196 AAAGATATATAA-ATA-
1 AAATA-ATATAATATAT
* *
102613211 AAATAGTATAAAATAT
1 AAATAATATAATATAT
102613227 A
1 A
102613228 TATATACGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.13
15 14 0.36
16 15 0.38
17 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATAATATAATATAT
Found at i:102613204 original size:25 final size:25
Alignment explanation
Indices: 102613175--102613307 Score: 86
Period size: 25 Copynumber: 5.6 Consensus size: 25
102613165 AAATATATAT
102613175 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
102613200 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
102613225 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
**
102613251 A-ATATACCT-A-AT-ATATTAAAG
1 ATATATAAATAATATAATATTAAAG
*
102613272 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
102613295 AAATAT-AATAATA
1 ATATATAAATAATA
102613308 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 20
0.71 0.13 0.17
Matches are distributed among these distances:
19 1 0.01
20 5 0.06
21 9 0.11
22 2 0.02
23 13 0.15
24 9 0.11
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:102613863 original size:30 final size:30
Alignment explanation
Indices: 102613829--102613919 Score: 155
Period size: 30 Copynumber: 3.0 Consensus size: 30
102613819 AATGGAGCAA
* *
102613829 GTGTGGCTAGTGGATTTGGTGGTGGAAAAT
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
102613859 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
102613889 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
102613919 G
1 G
102613920 CTAAGATTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.21, C:0.03, G:0.48, T:0.27
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:102620367 original size:13 final size:15
Alignment explanation
Indices: 102620333--102620372 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
102620323 ATATTTCCAC
*
102620333 TCTATTGAATTTTAT
1 TCTATTAAATTTTAT
102620348 TCT-TT-AATTTTAT
1 TCTATTAAATTTTAT
102620361 T-TATTAAATTTT
1 TCTATTAAATTTT
102620373 GTCTCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 11 0.48
14 8 0.35
15 3 0.13
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (15 bp):
TCTATTAAATTTTAT
Found at i:102620690 original size:38 final size:38
Alignment explanation
Indices: 102620642--102620731 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
102620632 TTTTTCCATA
*
102620642 TTTT-AAATAAAAATATGA-AATTTTTTAAAATATATAT
1 TTTTAAAATAAAAATATGATAATTTTTTAAAA-ATAAAT
*
102620679 TTTTAAAATAAAAA-ATTATAATTTTTTAAAAATAAAT
1 TTTTAAAATAAAAATATGATAATTTTTTAAAAATAAAT
**
102620716 TATAAAAAATAAAAAT
1 T-TTTAAAATAAAAAT
102620732 TCTTTAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
37 13 0.29
38 32 0.71
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (38 bp):
TTTTAAAATAAAAATATGATAATTTTTTAAAAATAAAT
Found at i:102620715 original size:21 final size:22
Alignment explanation
Indices: 102620667--102620720 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
102620657 TGAAATTTTT
*
102620667 TAAAATATATATTTTTAAAATAA
1 TAAATTATA-ATTTTTAAAATAA
* *
102620690 AAAATTATAATTTTTTAAA-AA
1 TAAATTATAATTTTTAAAATAA
102620711 TAAATTATAA
1 TAAATTATAA
102620721 AAAATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 11 0.41
22 9 0.33
23 7 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TAAATTATAATTTTTAAAATAA
Found at i:102621266 original size:27 final size:25
Alignment explanation
Indices: 102621215--102621267 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
102621205 AATTATGATT
*
102621215 TGTTTTAAAAATAAAATATTAAAAA
1 TGTTTTAAAAATAAAAAATTAAAAA
*
102621240 TGTTTTAAAAATATAAAAAATTTAAAA
1 TGTTTT-AAAA-ATAAAAAATTAAAAA
102621267 T
1 T
102621268 TCAATGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 4 0.17
27 14 0.58
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (25 bp):
TGTTTTAAAAATAAAAAATTAAAAA
Found at i:102621454 original size:15 final size:16
Alignment explanation
Indices: 102621434--102621463 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102621424 TTTAAAGAGT
102621434 TTTTATTT-TTTAAAC
1 TTTTATTTATTTAAAC
102621449 TTTTATTTATTTAAA
1 TTTTATTTATTTAAA
102621464 ATAATATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTATTTATTTAAAC
Found at i:102622485 original size:30 final size:31
Alignment explanation
Indices: 102622438--102622503 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 31
102622428 TCGCCTTTTC
*
102622438 ATAATGAAATTTTTTTAATTCAAATTAATAT
1 ATAATGAAATATTTTTAATTCAAATTAATAT
102622469 ATAATGAAA-ATTTTTAATTCAAATTAATAT
1 ATAATGAAATATTTTTAATTCAAATTAATAT
102622499 ATAAT
1 ATAAT
102622504 AATAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.74
31 9 0.26
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (31 bp):
ATAATGAAATATTTTTAATTCAAATTAATAT
Found at i:102628491 original size:26 final size:26
Alignment explanation
Indices: 102628454--102628589 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
102628444 TGATACAAAT
* *
102628454 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102628480 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
102628506 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102628532 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102628558 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102628584 TGATAA
1 TGATAA
102628590 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:102630622 original size:137 final size:137
Alignment explanation
Indices: 102630376--102630662 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
102630366 GAGTAGTCTC
* *
102630376 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGAATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
* *
102630441 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATAGTAATCTGAAAAGGGCTCTGGCCCAGTACC
102630506 ACTGTTA
131 ACTGTTA
102630513 CCCAAATGGGCTTGAATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
1 CCCAAATGGGCTTGAATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
102630578 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATAGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATAGTAATCTGAAAAGGGCTCTGGCCCAGTACC
102630643 ACTGTTA
131 ACTGTTA
**
102630650 CCTGAATGGGCTT
1 CCCAAATGGGCTT
102630663 AGGCCAATGG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGAATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATAGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:102631939 original size:12 final size:12
Alignment explanation
Indices: 102631922--102631960 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
102631912 ATTCGGGGAA
102631922 GAGGCCGTGGTC
1 GAGGCCGTGGTC
102631934 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
102631946 GAGGTCGTGGTC
1 GAGGCCGTGGTC
102631958 GAG
1 GAG
102631961 ACCGAGGTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.10, C:0.21, G:0.51, T:0.18
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:102634559 original size:66 final size:66
Alignment explanation
Indices: 102634487--102634652 Score: 228
Period size: 66 Copynumber: 2.5 Consensus size: 66
102634477 CATTCATACA
* *
102634487 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
*
102634552 T
66 C
* * * * *
102634553 TCATTCATAACACGTTTAAGTAAGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
102634618 C
66 C
* *
102634619 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
102634653 GACCATAACA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
64 21 0.24
66 65 0.76
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
C
Found at i:102635341 original size:86 final size:86
Alignment explanation
Indices: 102635057--102635520 Score: 474
Period size: 86 Copynumber: 5.4 Consensus size: 86
102635047 TCCTAACCCC
* * * * * * *
102635057 CCCTAAGTAGTAGGAAAACAGATCGAAGATGACGAGCCTTAACCCCCTAAGCAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAA
*
102635122 GTTGAATTGCAGATCTTATCT
66 GTTGAATTACAGATCTTATCT
* * *
102635143 CCCTAAGCAGTAGTGAAGCAGATCAAAAACGAAGAACCTTAAACTCCCTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGGGTAACA
*
102635208 AGTTGAATTGCAGATCTTATCT
65 AGTTGAATTACAGATCTTATCT
* * *
102635230 CCCTAAGCAGTAGTGG-AGCATATCGAAGACGAAGAACCTTAAATCCTTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAG-GGAAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACA
*
102635294 GGTTGAATTACAGATCTTATCT
65 AGTTGAATTACAGATCTTATCT
* **
102635316 CCCTAAGCAGTAGGGAAGCAGATCGAAGACAAAGGGCCTT-AACCCCTTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGAACCTTAAACCCC-TAAGCAGTAGGGTAACA
* * *
102635380 GGCT-AATTTACAGATCTTAAC-
65 AGTTGAA-TTACAGATCTTATCT
* * * * ** * *
102635401 CCCTAAGCAATAGGGAAACAGATCGAAGATGATG-GGCTTTAACCCTCTAAGTAGTAGGGTAACA
1 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGAACCTTAAACCC-CTAAGCAGTAGGGTAACA
* * * * *
102635465 AGCTAAATTTAC-GAGCTTTAACC
65 AGTTGAA-TTACAGATC-TTATCT
*
102635488 CCCTAAGCAGTAAGTGGAA-CAGATCGTAGACGA
1 CCCTAAGCAGT-AG-GGAAGCAGATCGAAGACGA
102635521 CGAATCTCGC
Statistics
Matches: 328, Mismatches: 38, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
84 4 0.01
85 64 0.20
86 152 0.46
87 89 0.27
88 15 0.05
89 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAA
GTTGAATTACAGATCTTATCT
Found at i:102641441 original size:20 final size:20
Alignment explanation
Indices: 102641406--102641443 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102641396 TTTTATTTTA
102641406 AGAATTATTAATAATTAATT
1 AGAATTATTAATAATTAATT
102641426 AGAATATATTAA-AATTAA
1 AGAAT-TATTAATAATTAA
102641444 AATATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
AGAATTATTAATAATTAATT
Found at i:102643008 original size:17 final size:17
Alignment explanation
Indices: 102642986--102643020 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
102642976 TTAGATCTAA
* *
102642986 AAATAAGTTTAGGTTTT
1 AAATAAGTATAAGTTTT
102643003 AAATAAGTATAAGTTTT
1 AAATAAGTATAAGTTTT
102643020 A
1 A
102643021 TGAAGTTGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (17 bp):
AAATAAGTATAAGTTTT
Found at i:102644519 original size:20 final size:22
Alignment explanation
Indices: 102644494--102644543 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
102644484 TAATATAAAT
102644494 ATATATAATT-ATTATT-TAAC
1 ATATATAATTAATTATTATAAC
*
102644514 ATATATAATTAATTTTTATAAC
1 ATATATAATTAATTATTATAAC
102644536 ATAATATA
1 AT-ATATA
102644544 TTCGGGCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.38
21 5 0.19
22 6 0.23
23 5 0.19
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATATAATTAATTATTATAAC
Found at i:102644526 original size:24 final size:26
Alignment explanation
Indices: 102644481--102644544 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 26
102644471 TAGGTTAGTG
*
102644481 ATTTAATATAAATATATATAATTATT
1 ATTTAACATAAATATATATAATTATT
*
102644507 ATTTAACATATATA-AT-TAATT-TT
1 ATTTAACATAAATATATATAATTATT
*
102644530 -TATAACAT-AATATAT
1 ATTTAACATAAATATAT
102644545 TCGGGCTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.09
22 9 0.27
23 2 0.06
24 5 0.15
25 2 0.06
26 12 0.36
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAACATAAATATATATAATTATT
Found at i:102644945 original size:13 final size:14
Alignment explanation
Indices: 102644921--102644949 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
102644911 AAGATTTGAT
102644921 TTTTATTTTTATTA
1 TTTTATTTTTATTA
102644935 TTTTA-TTTTATTA
1 TTTTATTTTTATTA
102644948 TT
1 TT
102644950 AAATTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:102645830 original size:26 final size:26
Alignment explanation
Indices: 102645794--102645929 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
102645784 TGATACAAAT
102645794 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102645820 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102645846 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102645872 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102645898 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
102645924 TGATAA
1 TGATAA
102645930 GAATTTCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:102647397 original size:26 final size:26
Alignment explanation
Indices: 102647367--102647464 Score: 128
Period size: 26 Copynumber: 3.8 Consensus size: 26
102647357 AAAAGTAGCT
* * * *
102647367 AAATTACTATAATACCCCTATGTGGA
1 AAATTACTGTTATACCCCTAGGTGCA
102647393 AAATTACTGTTATA-CCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
*
102647418 AAATTACCGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
*
102647444 AAATTACCGTTATA-CCCTAGG
1 AAATTACTGTTATACCCCTAGG
102647465 GTTAATTTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
25 29 0.44
26 37 0.56
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:102647420 original size:25 final size:26
Alignment explanation
Indices: 102647378--102647464 Score: 133
Period size: 25 Copynumber: 3.4 Consensus size: 26
102647368 AATTACTATA
* * *
102647378 ATACCCCTATGTGGAAAATTACTGTT
1 ATACCCCTAGGTGCAAAATTACCGTT
102647404 ATA-CCCTAGGTGCAAAATTACCGTT
1 ATACCCCTAGGTGCAAAATTACCGTT
102647429 ATACCCCTAGGTGCAAAATTACCGTT
1 ATACCCCTAGGTGCAAAATTACCGTT
102647455 ATA-CCCTAGG
1 ATACCCCTAGG
102647465 GTTAATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
25 29 0.51
26 28 0.49
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACCCCTAGGTGCAAAATTACCGTT
Found at i:102647608 original size:27 final size:27
Alignment explanation
Indices: 102647567--102647705 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
102647557 GAGGAAGCGT
*
102647567 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
102647594 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
102647621 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
102647648 TCTGGTGGC-CTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
102647675 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
102647701 TCTGG
1 TCTGG
102647706 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 18 0.18
27 76 0.76
28 6 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:102647652 original size:54 final size:54
Alignment explanation
Indices: 102647567--102647705 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
102647557 GAGGAAGCGT
* * *
102647567 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGC-CTGCCACAAATATCTGTA
* *
102647621 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
* *
102647675 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
102647706 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 26 0.34
54 51 0.66
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
Found at i:102651668 original size:26 final size:26
Alignment explanation
Indices: 102651609--102651743 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
102651599 TGATACAAAT
102651609 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
102651634 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102651660 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102651686 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102651712 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102651738 TGATAA
1 TGATAA
102651744 GAATTTCATG
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:102653398 original size:27 final size:27
Alignment explanation
Indices: 102653357--102653469 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
102653347 GAGGAAGCGT
*
102653357 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
102653384 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
102653411 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
102653439 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
102653465 TCTGG
1 TCTGG
102653470 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:102653462 original size:54 final size:54
Alignment explanation
Indices: 102653355--102653469 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
102653345 TGGAGGAAGC
*
102653355 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
102653409 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
102653463 GTTCTGG
1 GTTCTGG
102653470 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:102654489 original size:3 final size:3
Alignment explanation
Indices: 102654483--102654645 Score: 147
Period size: 3 Copynumber: 54.3 Consensus size: 3
102654473 TTTTTTTTAC
* *
102654483 TAT TAT T-T ATAT TTAT TAT TAT TAT TAT TAT TAT TAC TAT CAT TAT
1 TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
102654529 TAT T-T TAC TAT TAC AAT TAT TTT CTAT AAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
*
102654574 TTT TAT CT-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TCAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * *
102654619 TA- TAG TAC TAT TAT TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
102654646 TTTGTTATCC
Statistics
Matches: 130, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
2 8 0.06
3 113 0.87
4 9 0.07
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:102655231 original size:125 final size:126
Alignment explanation
Indices: 102655015--102655244 Score: 291
Period size: 125 Copynumber: 1.8 Consensus size: 126
102655005 TTTTTTTCAC
* * * * *
102655015 AAAATAGAGGTAATATTTCGTGTTTGGAAGTTCGAGAAATCGTGCCCTACCGTGCTGAGTTTTGA
1 AAAATAGAGGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCGTGCTGAGTTTCGA
** * * * * * *
102655080 TTTTTCGTTTGACCGAATAACTAAATATCGTTTTGAAATTCCATCCATGTTTTCTTAAATT
66 TTTACCGTATAACCAAATAACCAAATATCCTTTTAAAATTCCATCCATGTTTTCTTAAATT
* ** *
102655141 AAAAT-GAGGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATTGTGCTGGGTTTCGA
1 AAAATAGAGGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCGTGCTGAGTTTCGA
*
102655205 TTTACCGTATAACCAAATAGCCAAATATCCTTTTAAAATT
66 TTTACCGTATAACCAAATAACCAAATATCCTTTTAAAATT
102655245 TCAAATGTAT
Statistics
Matches: 86, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
125 81 0.94
126 5 0.06
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (126 bp):
AAAATAGAGGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCGTGCTGAGTTTCGA
TTTACCGTATAACCAAATAACCAAATATCCTTTTAAAATTCCATCCATGTTTTCTTAAATT
Found at i:102656431 original size:26 final size:26
Alignment explanation
Indices: 102656395--102656504 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
102656385 TGATACAAAT
102656395 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
102656421 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102656447 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
102656473 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
102656499 TGATAA
1 TGATAA
102656505 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:102658152 original size:27 final size:27
Alignment explanation
Indices: 102658111--102658223 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
102658101 GAGGAAGCGT
*
102658111 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
102658138 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
102658165 TCTGGTGGCTCTGCCACGATTATCTATA
1 TCTGGTGGCTCTGCCACAAATATCT-GA
* * * *
102658193 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
102658219 TCTGG
1 TCTGG
102658224 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:102658216 original size:54 final size:54
Alignment explanation
Indices: 102658109--102658223 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
102658099 TGGAGGAAGC
*
102658109 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * * *
102658163 GTTCTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCT-GATCTGGTGACTCTGCCACATATATCT
102658217 GTTCTGG
1 GTTCTGG
102658224 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:102662403 original size:25 final size:23
Alignment explanation
Indices: 102662351--102662405 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
102662341 TATAAATAGT
102662351 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
102662374 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
102662399 AATAGTG
1 AATAGTG
102662406 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:102662486 original size:22 final size:22
Alignment explanation
Indices: 102662461--102662535 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
102662451 TATGAAATAG
*
102662461 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
102662483 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
102662508 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
102662530 AGATAA
1 ATATAA
102662536 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:102662505 original size:25 final size:25
Alignment explanation
Indices: 102662467--102662673 Score: 117
Period size: 25 Copynumber: 8.4 Consensus size: 25
102662457 ATAGATATAA
* *
102662467 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
102662492 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
102662515 -TAAAATATATACATAAGATAACATGTAG
1 AAAAAATATATACAT-A-AT-ATA-GTAT
* *
102662543 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
102662568 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * * *
102662593 AATATATATATACGTAATATAGAAT
1 AAAAAATATATACATAATATAGTAT
** * *
102662618 -TTAGA-ATATACCTAATATA-T-T
1 AAAAAATATATACATAATATAGTAT
*
102662639 AAAAGAATATAT--ATAATATAATATT
1 AAAA-AATATATACATAATATAGTA-T
102662664 AAAAAATATA
1 AAAAAATATA
102662674 ATAATAACAA
Statistics
Matches: 138, Mismatches: 31, Indels: 27
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 20 0.14
23 17 0.12
24 15 0.11
25 68 0.49
26 2 0.01
27 2 0.01
28 2 0.01
29 11 0.08
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:102663229 original size:30 final size:30
Alignment explanation
Indices: 102663161--102663229 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
102663151 TAGGTACAAG
*
102663161 TGGTGGTGAAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
* *
102663191 AGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
102663221 TGGTGGTGG
1 TGGTGGTGG
102663230 CAAAGGCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
Found at i:102664463 original size:27 final size:27
Alignment explanation
Indices: 102664426--102664587 Score: 197
Period size: 27 Copynumber: 6.0 Consensus size: 27
102664416 AGCATGGCTG
* *
102664426 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
102664452 CCAGATACAGATA-ATCATGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
102664480 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
102664507 CCAGATC-GATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
102664533 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
102664560 CCAGATCAGATA-ATTGTGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
102664587 C
1 C
102664588 TAGGACGCTT
Statistics
Matches: 119, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
26 29 0.24
27 74 0.62
28 16 0.13
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:102664540 original size:53 final size:54
Alignment explanation
Indices: 102664426--102664587 Score: 247
Period size: 53 Copynumber: 3.0 Consensus size: 54
102664416 AGCATGGCTG
* * ** *
102664426 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
*
102664480 CCAGAACAGATATATGTGGCAGAGCCACCAGATC-GATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
102664533 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
102664587 C
1 C
102664588 TAGGACGCTT
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
53 49 0.49
54 32 0.32
55 18 0.18
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
Found at i:102666250 original size:26 final size:26
Alignment explanation
Indices: 102666214--102666347 Score: 241
Period size: 26 Copynumber: 5.2 Consensus size: 26
102666204 TGAAATTCCA
102666214 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102666240 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
102666266 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
102666292 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
102666318 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
102666344 ATCA
1 ATCA
102666348 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:102667295 original size:102 final size:103
Alignment explanation
Indices: 102667180--102667369 Score: 314
Period size: 102 Copynumber: 1.8 Consensus size: 103
102667170 AAAATAGATT
*
102667180 TTGAAAATACCTCGGTATGTGACTC-GAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTT
1 TTGAAAATACCTCGGCATGTGA-TCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
102667243 G-CAAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
65 GACAAA-CATAAATTGAAAAAAAATAAAAATAAAAATCAA
*
102667282 TTGAAAATACCTCGGCGTGTGATCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCGGCATGTGATCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTT
102667347 GACAAACATAAATTGAAAAAAAA
65 GACAAACATAAATTGAAAAAAAA
102667370 AGAAATTGAA
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
101 2 0.02
102 53 0.65
104 23 0.28
105 4 0.05
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (103 bp):
TTGAAAATACCTCGGCATGTGATCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG
ACAAACATAAATTGAAAAAAAATAAAAATAAAAATCAA
Found at i:102667423 original size:91 final size:89
Alignment explanation
Indices: 102667280--102667636 Score: 355
Period size: 91 Copynumber: 3.9 Consensus size: 89
102667270 AATAAAAATC
* * * * *
102667280 AATTGAAAATACCTCGGCGTGTGATCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTT
1 AATTGAAAATACCTCAGC-TGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
*
102667344 TTTGACAA-ACATAAATTGAAAAAAAAAGA
63 TTTGA-AACACAGAAATTG--AAAAAAAGA
* * *
102667373 AATTGAAAATATCTCAGCTTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
1 AATTGAAAATACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
* * *
102667437 GGAAAAACA-AAATTTGAAAAACAGA
65 TGAAACACAGAAA-TTGAAAAAAAGA
* ** * *
102667462 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGC-TGT-CCT-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
* *
102667527 TTTGAAACACAGAAATTGAAGAATAGA
63 TTTGAAACACAGAAATTGAAAAAAAGA
* * * * *
102667554 AATGGAAAACACCTCAG-TGTCTTGAGGTTCAACTCACCCCTCGCAATATGAGCTGATTTTTTTT
1 AATTGAAAATACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTT
*
102667618 GAAAGACAGAAATTGAAAA
66 GAAACACAGAAATTGAAAA
102667637 TACCTCAACG
Statistics
Matches: 226, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
88 55 0.24
89 28 0.12
90 9 0.04
91 75 0.33
92 37 0.16
93 22 0.10
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (89 bp):
AATTGAAAATACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTT
GAAACACAGAAATTGAAAAAAAGA
Found at i:102667470 original size:13 final size:14
Alignment explanation
Indices: 102667438--102667470 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
102667428 TGATTTTTTG
102667438 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
102667452 GAAAAACAGAATTT
1 GAAAAACAAAATTT
102667466 GAAAA
1 GAAAA
102667471 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:102667501 original size:182 final size:179
Alignment explanation
Indices: 102667282--102667615 Score: 449
Period size: 182 Copynumber: 1.8 Consensus size: 179
102667272 TAAAAATCAA
* * * * *
102667282 TTGAAAATACCTCGGCGTGTGATCGGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTT
1 TTGAAAATACCTCAGCGTGTGATCGAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
* * * * *
102667346 TGACAA-ACATAAATTGAAAAAAAAAGAAATTGAAAATATCTCAGCTTGTCCTGAGGCTGAACTC
66 TGA-AACACAGAAATTG--AAAAAAAGAAATGGAAAACACCTCAG--TGTCCTGAGGCTCAACTC
* *
102667410 ACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
126 ACCCCTCGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
102667464 TTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGA-TCGAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * *
102667528 TTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGTGTCTTGAGGTTCAACTCACCC
65 TTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCCTGAGGCTCAACTCACCC
102667593 CTCGCAATATGAGCTGATTTTTT
130 CTCGCAATATGAGCTGATTTTTT
102667616 TTGAAAGACA
Statistics
Matches: 133, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
179 40 0.30
181 21 0.16
182 52 0.39
183 20 0.15
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (179 bp):
TTGAAAATACCTCAGCGTGTGATCGAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCCTGAGGCTCAACTCACCCC
TCGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:102667823 original size:75 final size:75
Alignment explanation
Indices: 102667542--102668146 Score: 670
Period size: 73 Copynumber: 8.3 Consensus size: 75
102667532 AACACAGAAA
* * * * * *
102667542 TTGAAGAATAGAAATGGAAAACACCTC-A-GTGTCTTGAGGTTCAACTCACCCCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
102667605 GCTGATTTTTT
66 GTTGA-TTTTT
* * *
102667616 TTGAAAGACAGAAATTGAAAATACCTCAACGTATCTTGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
102667681 GTTGA--TTT
66 GTTGATTTTT
* * * * * * *
102667689 TTGACAAATAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
102667752 GTTGATTTTT
66 GTTGATTTTT
* *
102667762 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
102667827 GCTGATTTTT
66 GTTGATTTTT
** *
102667837 TT--TTAA-AGACA--G-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
102667896 GTTGA--TTT
66 GTTGATTTTT
* * * * * * * *
102667904 TTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
102667969 GTTGGTTTTT
66 GTTGATTTTT
* * *
102667979 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTTGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
102668044 GTTGA--GTT
66 GTTGATTTTT
* * * * *
102668052 TTGACAAACCA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TTGA-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
102668116 AGTTGATTTTT
65 AGTTGATTTTT
* * *
102668127 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
102668147 AACGAAAATT
Statistics
Matches: 442, Mismatches: 71, Indels: 36
0.81 0.13 0.07
Matches are distributed among these distances:
67 5 0.01
69 51 0.12
70 4 0.01
71 35 0.08
72 6 0.01
73 160 0.36
74 37 0.08
75 109 0.25
76 35 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:102668031 original size:217 final size:216
Alignment explanation
Indices: 102667542--102668126 Score: 775
Period size: 217 Copynumber: 2.7 Consensus size: 216
102667532 AACACAGAAA
* * * * * *
102667542 TTGAAGAATAGAAATGGAAAACACCTC-A-GTGTCTTGAGGTTCAACTCACCCCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
* * *
102667605 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTATCTTGAGGCTCAACTTACCTC
66 GCTGATTTTTTTTCAAAGAC----A-TG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * * *
102667670 TCGCAATATGAGTTGATTTTTGACAAATAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
125 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCCTAAGGCTCAACT
102667735 CACCTATCGCAATATGAGTTGATTTTT
190 CACCTATCGCAATATGAGTTGATTTTT
102667762 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
*
102667827 GCTGATTTTTTTTTAAAGACA-GAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
66 GCTGATTTTTTTTCAAAGACATGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
102667891 TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACC
131 TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCCTAAGGCTCAACTCACC
*
102667956 TATCGCAATATGAGTTGGTTTTT
194 TATCGCAATATGAGTTGATTTTT
* * *
102667979 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCT-TGCAATATA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCT-CAATATG
* * ** * * * * *
102668043 AGTTGA-GTTTTGACAAACCAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
65 AGCTGATTTTTTTTCAAA--GACA-TGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
102668107 CGCAATATGAGTTGATTTTT
126 CGCAATATGAGTTGATTTTT
102668127 TTAGAAACAT
Statistics
Matches: 328, Mismatches: 27, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
215 82 0.25
216 9 0.03
217 103 0.31
218 3 0.01
220 27 0.08
221 52 0.16
222 52 0.16
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (216 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
GCTGATTTTTTTTCAAAGACATGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCCTAAGGCTCAACTCACCTA
TCGCAATATGAGTTGATTTTT
Found at i:102668047 original size:148 final size:147
Alignment explanation
Indices: 102667542--102668213 Score: 664
Period size: 148 Copynumber: 4.5 Consensus size: 147
102667532 AACACAGAAA
* * * * * * *
102667542 TTGAAGAATAGAAATGGAAAACACCTCAGTGTCTTGAGGTTCAACTCACCCCTCGCAATATGAGC
1 TTGAAAAACAGAAATTGAAAATACCTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
102667607 TGATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTATCTTGAGGCTCAACTTACCTCT
66 TGA--TTTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
102667671 CGCAATATGAGTTGA--TTT
128 CGCAATATGAGTTGATTTTT
* * * * * * *
102667689 TTGACAAATAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGT
1 TTGAAAAACAGAAATTGAAAATACCTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
102667754 TGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCT
66 TGA-TTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
*
102667819 CAATATGAGCTGATTTTT
130 CAATATGAGTTGATTTTT
** *
102667837 TT--TTAA-AGACA--G-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
102667896 GTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACCTATC
64 GTTGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
102667960 GCAATATGAGTTGGTTTTT
129 GCAATATGAGTTGATTTTT
* * *
102667979 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTTGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
102668044 GTTGA-GTTTTGACAAACCAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTC
64 GTTGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
102668108 GCAATATGAGTTGATTTTT
129 GCAATATGAGTTGATTTTT
* *
102668127 TTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 TT-G-----------AAAAACA-G-AAATTGAAAATACCTCA--GTGTCTTGAGGCTCAACTCAC
102668192 CTCTCGCAATATGAGTTGATTT
50 CTCTCGCAATATGAGTTGATTT
102668214 GAAAAGCAGA
Statistics
Matches: 444, Mismatches: 54, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
142 76 0.17
143 2 0.00
144 39 0.09
145 7 0.02
146 69 0.16
147 61 0.14
148 127 0.29
149 1 0.00
160 6 0.01
161 2 0.00
162 53 0.12
163 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTT
Found at i:102668347 original size:99 final size:99
Alignment explanation
Indices: 102668152--102668447 Score: 407
Period size: 99 Copynumber: 3.0 Consensus size: 99
102668142 AAAAAAACGA
*
102668152 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTGA
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
* * * *
102668216 AAAGCAGAATTTGTAAGGCAAAAATTGAAAAACAG
66 AAAGCAGAAATTGAAAAGCAGAAATTG-AAAACAG
*
102668251 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTGGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG
*
102668316 AAAAACAGAAATT-AAAAGCAGAAATTGAAAACAG
65 AAAAGCAGAAATTGAAAAGCAGAAATTGAAAACAG
* ** * *
102668350 AAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTG
* * *
102668415 AAAAGCATAAATTGAAAAAACGGAAATTGAAAA
65 AAAAGCAGAAATTG-AAAAGCAGAAATTGAAAA
102668448 TATCTCAGCG
Statistics
Matches: 175, Mismatches: 17, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
99 132 0.75
100 12 0.07
101 31 0.18
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (99 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AAAGCAGAAATTGAAAAGCAGAAATTGAAAACAG
Found at i:102668359 original size:13 final size:13
Alignment explanation
Indices: 102668316--102668359 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
102668306 TGGATTTTTG
102668316 AAAAACAGAAATT
1 AAAAACAGAAATT
*
102668329 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
102668342 GAAAACAGAAATT
1 AAAAACAGAAATT
102668355 AAAAA
1 AAAAA
102668360 TACCTTGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:102680771 original size:24 final size:24
Alignment explanation
Indices: 102680727--102680789 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
102680717 TTGTAATAAT
* *
102680727 AATATATACACAATATTGTATTTTAA
1 AATATATACATAATA--GTATTTGAA
* *
102680753 AATATATATATAATAGTATTTGAG
1 AATATATACATAATAGTATTTGAA
102680777 AATATATACATAA
1 AATATATACATAA
102680790 GATGATATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 19 0.59
26 13 0.41
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (24 bp):
AATATATACATAATAGTATTTGAA
Found at i:102680874 original size:11 final size:11
Alignment explanation
Indices: 102680847--102680891 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
102680837 ATGGCATTAA
*
102680847 AAAATATATAC
1 AAAATATATAT
*
102680858 ATAATATATAT
1 AAAATATATAT
*
102680869 AAAATACATAT
1 AAAATATATAT
*
102680880 AATATATATAT
1 AAAATATATAT
102680891 A
1 A
102680892 CGTATTAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATATAT
Found at i:102681447 original size:11 final size:12
Alignment explanation
Indices: 102681416--102681447 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
102681406 AGAAAAAAAA
102681416 GAAGAGAG-AGG
1 GAAGAGAGAAGG
102681427 GAAGAGAGAAGG
1 GAAGAGAGAAGG
102681439 G-AGAGAGAA
1 GAAGAGAGAA
102681448 AAGAGGGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:102681452 original size:18 final size:18
Alignment explanation
Indices: 102681400--102681452 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
102681390 ATTTGGGGAG
* * *
102681400 AGGGAAAGAAAAAAAAGA
1 AGGGAGAGAGAAAAGAGA
* * *
102681418 AGAGAGAGGGAAGAGAGA
1 AGGGAGAGAGAAAAGAGA
102681436 AGGGAGAGAGAAAAGAG
1 AGGGAGAGAGAAAAGAG
102681453 GGGGAAGGGG
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (18 bp):
AGGGAGAGAGAAAAGAGA
Found at i:102681569 original size:12 final size:13
Alignment explanation
Indices: 102681552--102681601 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
102681542 AAAAGGTATT
102681552 TTTGTTTT-TATA
1 TTTGTTTTATATA
102681564 TTTGTTTTATATA
1 TTTGTTTTATATA
*
102681577 TATATATTTTATTATA
1 T-T-TGTTTTA-TATA
102681593 TTT-TTTTAT
1 TTTGTTTTAT
102681602 TATGATGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 9 0.27
13 10 0.30
14 2 0.06
15 7 0.21
16 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTGTTTTATATA
Found at i:102681601 original size:13 final size:13
Alignment explanation
Indices: 102681548--102681604 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 13
102681538 CCAGAAAAGG
*
102681548 TATTTTTGTTTTTA
1 TATTTTT-TTATTA
102681562 TATTTGTTTTATATA
1 TATTT-TTTTAT-TA
*
102681577 TATATATTTTATTA
1 TAT-TTTTTTATTA
102681591 TATTTTTTTATTA
1 TATTTTTTTATTA
102681604 T
1 T
102681605 GATGTATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 10 0.27
14 13 0.35
15 13 0.35
16 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TATTTTTTTATTA
Found at i:102682019 original size:19 final size:19
Alignment explanation
Indices: 102681995--102682037 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
102681985 GGTTTCTTGG
102681995 TTTTTTTGGGGGTTAGGTT
1 TTTTTTTGGGGGTTAGGTT
***
102682014 TTTTTTTTTTGGTTAGGTT
1 TTTTTTTGGGGGTTAGGTT
102682033 TTTTT
1 TTTTT
102682038 GAGAGGGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.70
Consensus pattern (19 bp):
TTTTTTTGGGGGTTAGGTT
Found at i:102684024 original size:22 final size:22
Alignment explanation
Indices: 102683983--102684024 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
102683973 TATAGTGTAA
* *
102683983 AAAATACATACATAATATAATT
1 AAAATACATACACAAGATAATT
*
102684005 AAAATATATACACAAGATAA
1 AAAATACATACACAAGATAA
102684025 CATGTAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAATACATACACAAGATAATT
Found at i:102684068 original size:25 final size:25
Alignment explanation
Indices: 102684040--102684173 Score: 75
Period size: 25 Copynumber: 5.5 Consensus size: 25
102684030 AGAAAAAAAA
102684040 ATATAAATAATATAGTATTAAAGAT
1 ATATAAATAATATAGTATTAAAGAT
* * *
102684065 ATATACATAAAATAGTA-TAATATAT
1 ATATAAATAATATAGTATTAA-AGAT
** * *
102684090 ATATACGTAATATAGAATT-TAGA-
1 ATATAAATAATATAGTATTAAAGAT
** *
102684113 ATATACCTAATATA-T-TAAAAGAAT
1 ATATAAATAATATAGTATTAAAG-AT
* *
102684137 ATATATATATAATATAATATTAAA-AA
1 ATATA-A-ATAATATAGTATTAAAGAT
102684163 ATAT-AATAATA
1 ATATAAATAATA
102684174 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 16, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 20 0.24
24 11 0.13
25 32 0.38
26 13 0.15
27 1 0.01
28 4 0.05
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATAAATAATATAGTATTAAAGAT
Found at i:102684168 original size:15 final size:15
Alignment explanation
Indices: 102684124--102684170 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
102684114 TATACCTAAT
102684124 ATATTAAAAGAATAT-
1 ATATTAAAA-AATATA
* *
102684139 ATA-TATATAATATA
1 ATATTAAAAAATATA
102684153 ATATTAAAAAATATA
1 ATATTAAAAAATATA
102684168 ATA
1 ATA
102684171 ATAACAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.19
14 6 0.23
15 15 0.58
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
ATATTAAAAAATATA
Found at i:102684495 original size:16 final size:16
Alignment explanation
Indices: 102684457--102684495 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
102684447 CTCAAAAAAA
*
102684457 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
102684473 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
102684489 AATAACT
1 AAAAACT
102684496 CTTCTTCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:102684690 original size:30 final size:30
Alignment explanation
Indices: 102684656--102684781 Score: 207
Period size: 30 Copynumber: 4.2 Consensus size: 30
102684646 GTACAAGTGC
*
102684656 TGGTGGAGCAAGTGTGGCTAATGGAGTAGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
102684686 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
* *
102684716 TGGTGGAGCGAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
*
102684746 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
*
102684776 TAGTGG
1 TGGTGG
102684782 CAAAAGCTAG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 91 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.25
Consensus pattern (30 bp):
TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
Found at i:102688017 original size:84 final size:84
Alignment explanation
Indices: 102687911--102688707 Score: 1035
Period size: 84 Copynumber: 9.4 Consensus size: 84
102687901 GAGTAGATTA
* * *
102687911 AAGACAGTGAACCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAGAAAATACAGATCTCCTCTAA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
102687976 ACAGTAGTGGAGCAGATCG
66 ACAGTAGTGGAGCAGATCG
* * *
102687995 AAGACAGTGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATATCCCCTAA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
* * *
102688060 ACAGTAGTAGATCAGATCA
66 ACAGTAGTGGAGCAGATCG
*
102688079 AAGACAGTGAGCCTTAACCCCATAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
102688144 ACAGTAGTGGAGCAGATCG
66 ACAGTAGTGGAGCAGATCG
* * * * *
102688163 AAGACAGTGAGCGTTAAACCCTTAAGCAGTAGGGCAACAGGCTGGAAAATACAGATCTCCCCTAA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
102688228 ACAGTAGTGGAGCAGATCG
66 ACAGTAGTGGAGCAGATCG
* *
102688247 AAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAAATACATATCTCCCCTAA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
102688312 ACAGTAGTGGAGCAGATCG
66 ACAGTAGTGGAGCAGATCG
** *
102688331 AAGACAGTGAGCCTTAACCCTTTGAGCAGTAGGGTAACAGGCT-GAAAAATACAGATCTCCCCTA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAG-AAAATACAGATCTCCCCTA
102688395 AACAGTAGTGGAGCAGATCG
65 AACAGTAGTGGAGCAGATCG
* ** *
102688415 AAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCT-GAAAAATACAGATCTCCCCTA
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAG-AAAATACAGATCTCCCCTA
* * *
102688479 AATAGTAGTGGAGTAGATTG
65 AACAGTAGTGGAGCAGATCG
* ** * * *
102688499 AAGTCAGCAAGCATTAACCCCCTAAGCAGTAGAGTAACAGGCTA-AAAATTACAGATCTTATATC
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAA-TACAGATC---T-CC
* *
102688563 CCTAAGCAGTAGTGGAGCAAATCG
61 CCTAAACAGTAGTGGAGCAGATCG
* * * *
102688587 AAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAGCAGGCT-GAAGATTATAGATCTTATCTC
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAA-AATACAGATC---TC-C
* * *
102688651 CCTAAGCAGTAGTGGAGCGGATAG
61 CCTAAACAGTAGTGGAGCAGATCG
* * * * *
102688675 GAGACGGTGAGCCTTATCCCTCTAAGTAGTAGG
1 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGG
102688708 AAAATATGCT
Statistics
Matches: 632, Mismatches: 71, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
83 5 0.01
84 505 0.80
87 1 0.00
88 120 0.19
89 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (84 bp):
AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
ACAGTAGTGGAGCAGATCG
Found at i:102688402 original size:40 final size:39
Alignment explanation
Indices: 102688357--102688486 Score: 95
Period size: 40 Copynumber: 3.2 Consensus size: 39
102688347 ACCCTTTGAG
102688357 CAGTAGGGTAACAGGCTGAAAAATACAGATCTCCCCTAAA
1 CAGTAGGGTAACA-GCTGAAAAATACAGATCTCCCCTAAA
* * * * *
102688397 CAGTAGTGG-AGCAGATCG-AAGATAGCA-AGCCTTAACCCCCTAAG
1 CAGTAG-GGTAACAGCT-GAAAAATA-CAGA-TC-T---CCCCTAAA
102688441 CAGTAGGGTAACAAGCTGAAAAATACAGATCTCCCCTAAA
1 CAGTAGGGTAAC-AGCTGAAAAATACAGATCTCCCCTAAA
*
102688481 TAGTAG
1 CAGTAG
102688487 TGGAGTAGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 24
0.66 0.11 0.24
Matches are distributed among these distances:
39 8 0.12
40 25 0.37
41 3 0.04
43 3 0.04
44 19 0.28
45 9 0.13
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (39 bp):
CAGTAGGGTAACAGCTGAAAAATACAGATCTCCCCTAAA
Found at i:102688654 original size:44 final size:44
Alignment explanation
Indices: 102688518--102688662 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 44
102688508 AGCATTAACC
* * * * * *
102688518 CCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCTTATAT
1 CCCTAAGCAGTAGGGTAGCAGGCTGAAGATTATAGATCTTATCT
** *** * * *
102688562 CCCTAAGCAGTAGTGG-AGCA-AATCGAAGACGGT-GAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAGCAGGCT-GAAGATTATAGA-TCTTATCT
102688606 CCCTAAGCAGTAGGGTAGCAGGCTGAAGATTATAGATCTTATCT
1 CCCTAAGCAGTAGGGTAGCAGGCTGAAGATTATAGATCTTATCT
102688650 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
102688663 TGGAGCGGAT
Statistics
Matches: 73, Mismatches: 22, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
43 5 0.07
44 64 0.88
45 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAGCAGGCTGAAGATTATAGATCTTATCT
Found at i:102688691 original size:44 final size:43
Alignment explanation
Indices: 102688555--102688706 Score: 121
Period size: 44 Copynumber: 3.5 Consensus size: 43
102688545 AATTACAGAT
* **
102688555 CTTATATCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCGGAT-GAAGACGGTGAGC
* * * *** *
102688599 CTTAACCCCCTAAGCAGTAG-GGTAGCAGGCTGAAGATTAT-AGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGC-GGATGAAGACGGTGAG-C
*
102688643 CTTATCTCCCTAAGCAGTAGTGGAGCGGATAGGAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCGGAT-GAAGACGGTGAGC
*
102688687 CTTATC-CCTCTAAGTAGTAG
1 CTTATCTCC-CTAAGCAGTAG
102688707 GAAAATATGC
Statistics
Matches: 82, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
43 9 0.11
44 68 0.83
45 5 0.06
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (43 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCGGATGAAGACGGTGAGC
Found at i:102688779 original size:88 final size:87
Alignment explanation
Indices: 102687868--102688843 Score: 483
Period size: 84 Copynumber: 11.4 Consensus size: 87
102687858 AGCAGACTGA
* * * * ** * * * *
102687868 AAATTACAGATCTTATCTCCCTAAGTAATAAG-GGAGTAGATTAAAGACAGTGAACCTTAACCCC
1 AAATTATAGATCTTATCTCCCTAAGCAGT-AGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCC
** *
102687932 CTAAGCAGTAGGGTAATAGGCTAG
65 CTAAGCAGTAGGAAAACAGGCT-G
* * * * * * **
102687956 AAAATACAGATC---TC-CTCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAAACCCC
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
**
102688017 TAAGCAGTAGGGTAACAGGCTGG
66 TAAGCAGTAGGAAAACAGGCT-G
* * * * * * * * * *
102688040 AAAATACAGA---TATC-CCCTAAACAGTAGTAGATCAGATCAAAGACAGTGAGCCTTAACCCCA
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
**
102688101 TAAGCAGTAGGGTAACAGGCTAG
66 TAAGCAGTAGGAAAACAGGCT-G
* * * * * * ** *
102688124 AAAATACAGATC---TC-CCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCGTTAAACCCT
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
**
102688185 TAAGCAGTAGGGCAACAGGCTGG
66 TAAGCAGTAGGAAAACAGGCT-G
* * * * * *
102688208 AAAATACAGATC---TC-CCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCC
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
* **
102688269 TAAGTAGTAGGGTAACAGGCTAG
66 TAAGCAGTAGGAAAACAGGCT-G
* * * * * *
102688292 AAA--AT--A-CATATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCT
1 AAATTATAGATCTTATCT-CCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCC
* * **
102688352 TTGAGCAGTAGGGTAACAGGCTG
65 CTAAGCAGTAGGAAAACAGGCTG
* * * * ** ** *
102688375 AAAAATACAGATC---TC-CCCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCCTTAACCCC
1 -AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCC
** *
102688436 CTAAGCAGTAGGGTAACAAGCTG
65 CTAAGCAGTAGGAAAACAGGCTG
* * ** * * * * * ** * *
102688459 AAAAATACAGATC---TC-CCCTAAATAGTAGTGGAGTAGATTGAAGTCAGCAAGCATTAACCCC
1 -AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCC
* *
102688520 CTAAGCAGTA-GAGTAACAGGCTAA
65 CTAAGCAGTAGGA-AAACAGGCT-G
* * * * *
102688544 AAATTACAGATCTTATATCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCC
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
** *
102688609 TAAGCAGTAGGGTAGCAGGCTG
66 TAAGCAGTAGGAAAACAGGCTG
* *
102688631 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATAG-GAGACGGTGAGCCTTATCCC
1 AA-ATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAG-GACGGTGAGCCTTATCCC
* * * *
102688695 TCTAAGTAGTAGGAAAATATGCTGG
64 CCTAAGCAGTAGGAAAACAGGCT-G
* * * * * *
102688720 AAATTATAGATTTTATCTCCCTTAGTAGTAGTGGAGCAGATCGAGGACAGTAAGCCTTATCTCCC
1 AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
* *
102688785 T--G-AGTAGCAACGGAGCAGGCTG
66 TAAGCAGTAGGAA---AACAGGCTG
* * * *
102688807 AAGATTACAAATCATATCTCCCTAAGCAGTAGCGGAG
1 AA-ATTATAGATCTTATCTCCCTAAGCAGTAGTGGAG
102688844 AAAATTGAAA
Statistics
Matches: 753, Mismatches: 104, Indels: 62
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.00
80 1 0.00
82 3 0.00
83 4 0.01
84 499 0.66
85 9 0.01
86 4 0.01
87 6 0.01
88 220 0.29
89 6 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
AAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGTGAGCCTTATCCCCC
TAAGCAGTAGGAAAACAGGCTG
Found at i:102689225 original size:16 final size:16
Alignment explanation
Indices: 102689208--102689238 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
102689198 TGATTTTTAT
102689208 TTTTATTTT-TTATTA
1 TTTTATTTTATTATTA
102689223 TTTTATTTTATTATTA
1 TTTTATTTTATTATTA
102689239 AATTAGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATTTTATTATTA
Found at i:102689925 original size:16 final size:19
Alignment explanation
Indices: 102689904--102689953 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
102689894 TTACTGTTAG
102689904 TATTTTT-TTATTT-T-TT
1 TATTTTTATTATTTATATT
102689920 TATTTTACTATTATTTATATT
1 TATTTT--TATTATTTATATT
102689941 TATTTTTATTATT
1 TATTTTTATTATT
102689954 ATTATTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.21
18 1 0.03
19 13 0.45
20 1 0.03
21 8 0.28
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (19 bp):
TATTTTTATTATTTATATT
Found at i:102689934 original size:3 final size:3
Alignment explanation
Indices: 102689919--102690099 Score: 167
Period size: 3 Copynumber: 60.7 Consensus size: 3
102689909 TTTTATTTTT
* *
102689919 TTA TT- TTA CTA TTA TT- TATA TTTA TTT TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * *
102689964 TTA CTA TCA TTA TTA TT- TTA CTA TTA CAA TTA TTT TCTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
102690009 TTA TTA TTA TTA TCT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
102690054 TTA TTA TTA TTA TT- TTCA TTA -TA GTA CTA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
102690098 TT
1 TT
102690100 TTTGTTATCC
Statistics
Matches: 145, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
2 10 0.07
3 127 0.88
4 7 0.05
5 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:102691468 original size:30 final size:30
Alignment explanation
Indices: 102691434--102691496 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
102691424 ACTTATTTTA
102691434 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
102691464 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
102691494 TTG
1 TTG
102691497 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:102692763 original size:25 final size:25
Alignment explanation
Indices: 102692729--102692780 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
102692719 GTGGGGGAGA
102692729 ATATTTGGCCAAAAACTCTAACACC
1 ATATTTGGCCAAAAACTCTAACACC
102692754 ATATTTGGCCAAAAACTCTAACACC
1 ATATTTGGCCAAAAACTCTAACACC
102692779 AT
1 AT
102692781 TACTAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (25 bp):
ATATTTGGCCAAAAACTCTAACACC
Done.