Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 341 of 378
Found at i:103042546 original size:46 final size:46
Alignment explanation
Indices: 103042481--103042754 Score: 363
Period size: 46 Copynumber: 6.0 Consensus size: 46
103042471 TTATCTTTGA
* * * * *
103042481 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* *
103042527 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
103042573 CACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
103042619 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
103042665 CACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
**
103042711 CATGTTAACATGGTATCTTTCAACCATGGTCTTACAT-ATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCAT
103042755 TTCAGAGAGC
Statistics
Matches: 201, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 4 0.02
46 197 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:103042752 original size:92 final size:92
Alignment explanation
Indices: 103042486--103042758 Score: 433
Period size: 92 Copynumber: 3.0 Consensus size: 92
103042476 TTTGACATGA
* * * * *
103042486 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAA
*
103042550 CCATGGTCTTATTCATTTCATGTCACGC
65 CCATGGTCTTATTCATTTCATTTCACGC
103042578 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
103042643 CATGGTCTTATTCATTTCATTTCACGC
66 CATGGTCTTATTCATTTCATTTCACGC
**
103042670 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTAACATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
*
103042735 CATGGTCTTACAT-ATTTCATTTCA
66 CATGGTCTTA-TTCATTTCATTTCA
103042759 GAGAGCACAC
Statistics
Matches: 170, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
91 4 0.02
92 165 0.97
93 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATTTCACGC
Found at i:103044909 original size:11 final size:11
Alignment explanation
Indices: 103044893--103044957 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
103044883 ATATATACTA
103044893 AATAAAATAAT
1 AATAAAATAAT
103044904 AATAAAATAAT
1 AATAAAATAAT
*
103044915 AA-AATATAATT
1 AATAAAATAA-T
*
103044926 AA-AAATTAA-
1 AATAAAATAAT
* *
103044935 ATTAAAATATT
1 AATAAAATAAT
*
103044946 AATAAACTAAT
1 AATAAAATAAT
103044957 A
1 A
103044958 TTTATTTATT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
9 1 0.02
10 11 0.26
11 30 0.71
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:103046231 original size:21 final size:21
Alignment explanation
Indices: 103046189--103046231 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
103046179 TTTGAGACCT
**
103046189 TAACATGATAGTGCTTGGAAC
1 TAACATGATAGTGCTTACAAC
* *
103046210 TAACATGATGGTGTTTACAAC
1 TAACATGATAGTGCTTACAAC
103046231 T
1 T
103046232 CTCGTTGATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (21 bp):
TAACATGATAGTGCTTACAAC
Found at i:103053691 original size:28 final size:28
Alignment explanation
Indices: 103053660--103053714 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
103053650 AGTTGTAGGG
**
103053660 TTAATTTTTCTACTTTTTCTTGTTCTTT
1 TTAATTTTTCTACGATTTCTTGTTCTTT
*
103053688 TTAATTTTTCTGCGATTTCTTGTTCTT
1 TTAATTTTTCTACGATTTCTTGTTCTT
103053715 GTCATTTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.11, C:0.15, G:0.07, T:0.67
Consensus pattern (28 bp):
TTAATTTTTCTACGATTTCTTGTTCTTT
Found at i:103065058 original size:22 final size:22
Alignment explanation
Indices: 103065009--103065059 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
103064999 TGGACATATA
103065009 TAATTAGAG-TTCAAATATTGTG
1 TAATTA-AGTTTCAAATATTGTG
*
103065031 TAATTAAGTTTCAAAT-TTTTG
1 TAATTAAGTTTCAAATATTGTG
103065052 TATATTAA
1 TA-ATTAA
103065060 TTACAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (22 bp):
TAATTAAGTTTCAAATATTGTG
Found at i:103069141 original size:44 final size:45
Alignment explanation
Indices: 103069058--103069142 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 45
103069048 TAGGATCTGA
* * * *
103069058 TATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACT
1 TATGTATTTACGTGTAAGACCACGTCTAGGACATAGGCATCAACT
*
103069103 TATG-ATTTACGTGTAAGACCATGTCTAGGACATAGGCATC
1 TATGTATTTACGTGTAAGACCACGTCTAGGACATAGGCATC
103069143 GTATTTGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 31 0.89
45 4 0.11
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (45 bp):
TATGTATTTACGTGTAAGACCACGTCTAGGACATAGGCATCAACT
Found at i:103069225 original size:43 final size:43
Alignment explanation
Indices: 103069068--103069226 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
103069058 TATGTATTTT
103069068 CGTGTAAGACCACGTCTGGGACGTTGGCATC-A-ACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATA-TT-TGA-TTA
* * * * *
103069112 CGTGTAAGACCATGTCTAGGACATAGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * * *
103069154 CGTGTAAAACC-CTATATGGGACGGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTA
* * *
103069197 CATGTAAGACCACGTTTGGGACTTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
103069227 TGTAAGAGCT
Statistics
Matches: 90, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
42 25 0.28
43 34 0.38
44 30 0.33
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:103080229 original size:43 final size:43
Alignment explanation
Indices: 103080074--103080230 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
103080064 TGTGTTTTCG
* * **
103080074 TGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * * *
103080118 TGTAAGACCATGTCTGGGACATCGGTATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
*
103080160 TGTAAGACC-CTGTATGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
103080203 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
103080231 TGTACGAGTT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.30
43 38 0.42
44 26 0.29
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:103083606 original size:42 final size:42
Alignment explanation
Indices: 103083543--103083693 Score: 239
Period size: 42 Copynumber: 3.6 Consensus size: 42
103083533 CTTCATATGG
* * *
103083543 ACTTCATATAGACTTACTAAGCATATGGATAATTGCTTATTA
1 ACTTCATATGGACTTAATAAGCATATGGGTAATTGCTTATTA
*
103083585 ACTTCATATGGACTTAATAAGCATGTGGGTAATTGCTTATTA
1 ACTTCATATGGACTTAATAAGCATATGGGTAATTGCTTATTA
*
103083627 ACTTCATATGGACTTAATAAGCATGTGGGTAATTGCTTATTA
1 ACTTCATATGGACTTAATAAGCATATGGGTAATTGCTTATTA
**
103083669 ACTTCATATGGACTTGCTAAGCATA
1 ACTTCATATGGACTTAATAAGCATA
103083694 AAGCTTACCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 102 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (42 bp):
ACTTCATATGGACTTAATAAGCATATGGGTAATTGCTTATTA
Found at i:103086559 original size:22 final size:23
Alignment explanation
Indices: 103086520--103086563 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
103086510 ATAAGTATTT
103086520 CTTATTCACATTTTTAAATAAAG
1 CTTATTCACATTTTTAAATAAAG
103086543 CTTATTCACA-TTTTAAATAAA
1 CTTATTCACATTTTTAAATAAA
103086564 AAATTTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (23 bp):
CTTATTCACATTTTTAAATAAAG
Found at i:103098591 original size:25 final size:25
Alignment explanation
Indices: 103098557--103098606 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
103098547 GACTTAAAGG
103098557 ATTTAGTCAACATGTCCCATTCTTC
1 ATTTAGTCAACATGTCCCATTCTTC
103098582 ATTTAGTCAACATGTCCCATTCTTC
1 ATTTAGTCAACATGTCCCATTCTTC
103098607 TGTGCCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (25 bp):
ATTTAGTCAACATGTCCCATTCTTC
Found at i:103099177 original size:42 final size:43
Alignment explanation
Indices: 103099115--103099208 Score: 154
Period size: 42 Copynumber: 2.2 Consensus size: 43
103099105 CCTTTTTTTG
* *
103099115 TTGCCATTTGTTTTTTCATACTTTCTCTA-ATGGCCAAACTGC
1 TTGCCATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGC
103099157 TTGCCATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGC
1 TTGCCATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGC
*
103099200 TTGCAATTT
1 TTGCCATTT
103099209 TTGCATTGAG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 27 0.56
43 21 0.44
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (43 bp):
TTGCCATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGC
Found at i:103102454 original size:246 final size:248
Alignment explanation
Indices: 103102018--103102755 Score: 933
Period size: 246 Copynumber: 2.9 Consensus size: 248
103102008 CAGTGTCATG
* * * * *
103102018 GTTGATAGATGTACCCTTTGTAGCGGTATTAACACCTAGGATGCCATCAATGGCTTTGAGATTAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTAGGATGCTATCAATGGCCTTGAGATTAT
** * ** * *
103102083 CTTCCCCTGATGGTGATGCATCCATGATACCTTGTTGACGAGACATATTTTGTATTTGTTCACCA
66 CTTCCATTGATTGTGATGTGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCA
* * * * * *
103102148 TTTTTTATGCTACTCAAGCTCTTAGCTTCTCCTGCTGAAGTTGATAAGCTAGCGTTGGCTTCAGC
131 TTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGC
* ** * *
103102213 TTCAGCTAAAATTTTGGACTTGTGTTCAGAATCTTCTGGTTTTGATGC-TTT-
196 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
* *
103102264 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAAGGGCCTTGAGATTAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTAGGATGCTATCAATGGCCTTGAGATTAT
* * *
103102329 CTTCCATTGATTGTGACGTGTCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTGACCA
66 CTTCCATTGATTGTGATGTGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCA
* * * * * *
103102394 ATTCTAATGTTATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAAC
131 TTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGC
*
103102459 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTTTGGCTTTGATGCTTTTGCA
196 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTT--A
*
103102514 GCAAATTCATGGTCGATAGATGTACCCTTTGTAGCATTATCAACATCTAGGATGCTATCAATGGC
1 G--------T--T-GATAGATGTACCCTTTGTAGCGTTATCAACATCTAGGATGCTATCAATGGC
* * * *
103102579 CATGCA-ATTATCTTCCATTGATTGTGATGTGCCCATGATACCTTCTTGTCGATACATATTTTGT
55 CTTG-AGATTATCTTCCATTGATTGTGATGTGTCCATGATACCTTCTTGACGAGACATATTTTGT
*
103102643 ATCTGTTCACCATTTTTTATGTAATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGC
119 ATCTGTTCACCATTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGC
* * *
103102708 ATTGGCTTCGGCTTTGGCTAATCTTTTGGATTTATGTTCAGAATCTTC
184 ATTGGCTTCAGCTTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTC
103102756 AATAGATCCT
Statistics
Matches: 420, Mismatches: 56, Indels: 17
0.85 0.11 0.03
Matches are distributed among these distances:
246 208 0.50
247 3 0.01
250 1 0.00
258 1 0.00
260 1 0.00
261 205 0.49
262 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (248 bp):
GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTAGGATGCTATCAATGGCCTTGAGATTAT
CTTCCATTGATTGTGATGTGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCA
TTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGC
TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
Found at i:103102731 original size:261 final size:261
Alignment explanation
Indices: 103102267--103102754 Score: 780
Period size: 261 Copynumber: 1.9 Consensus size: 261
103102257 ATGCTTTGTT
* * *
103102267 GATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAAGGGCCTTGAGATTATCTT
1 GATAGATGTACCCTTTGTAGCATTATCAACATCTAGGATGCTATCAAGGGCCATGAGATTATCTT
* *
103102332 CCATTGATTGTGACGTGTCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTGACCAATT
66 CCATTGATTGTGACGTGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAATT
*
103102397 CTAATGTTATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
131 CTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
*
103102462 GGCTAATCTTTTGGATTTGTGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
196 GGCTAATCTTTTGGATTTATGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
103102527 C
261 C
*
103102528 GATAGATGTACCCTTTGTAGCATTATCAACATCTAGGATGCTATCAATGGCCATGCA-ATTATCT
1 GATAGATGTACCCTTTGTAGCATTATCAACATCTAGGATGCTATCAAGGGCCATG-AGATTATCT
* * * * *
103102592 TCCATTGATTGTGATGTGCCCATGATACCTTCTTGTCGATACATATTTTGTATCTGTTCACCATT
65 TCCATTGATTGTGACGTGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAAT
* * * * **
103102657 TTTTATGTAATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCGGCTT
130 TCTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTT
*
103102722 TGGCTAATCTTTTGGATTTATGTTCAGAATCTT
195 CGGCTAATCTTTTGGATTTATGTTCAGAATCTT
103102755 CAATAGATCC
Statistics
Matches: 206, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
261 205 1.00
262 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (261 bp):
GATAGATGTACCCTTTGTAGCATTATCAACATCTAGGATGCTATCAAGGGCCATGAGATTATCTT
CCATTGATTGTGACGTGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAATT
CTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
GGCTAATCTTTTGGATTTATGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
C
Found at i:103117589 original size:18 final size:18
Alignment explanation
Indices: 103117563--103117597 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103117553 TCGTAACGTT
*
103117563 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
103117581 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
103117598 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:103118287 original size:26 final size:26
Alignment explanation
Indices: 103118209--103118338 Score: 185
Period size: 26 Copynumber: 5.1 Consensus size: 26
103118199 GCCTAGCCTC
103118209 TTTCAAT-AACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
103118233 TTTCGGTAAACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
103118258 TTTCAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
** *
103118284 TTTCGGTAAACTGGGGCATAAGCTCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
103118310 TTTTAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
103118336 TTT
1 TTT
103118339 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
24 5 0.05
25 33 0.35
26 55 0.59
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:103118333 original size:52 final size:51
Alignment explanation
Indices: 103118209--103118338 Score: 219
Period size: 52 Copynumber: 2.6 Consensus size: 51
103118199 GCCTAGCCTC
103118209 TTTCAAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
*
103118258 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCTCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCT
*
103118310 TTTTAATAAACTGGGGCATAAGCCCTTTT
1 TTTCAATAAACTGGGGCATAAGCCCTTTT
103118339 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
49 7 0.09
50 10 0.13
51 25 0.33
52 34 0.45
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (51 bp):
TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
Found at i:103118413 original size:20 final size:20
Alignment explanation
Indices: 103118388--103118462 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
103118378 TTATGAATTC
*
103118388 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
103118408 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103118428 GTCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
103118448 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
103118463 TCCCACGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:103118518 original size:25 final size:25
Alignment explanation
Indices: 103118490--103118537 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
103118480 ATAATTAAAC
* *
103118490 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
103118515 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
103118538 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:103124722 original size:2 final size:2
Alignment explanation
Indices: 103124715--103124740 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
103124705 AAAATGTTGA
103124715 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
103124741 TACAAATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103144881 original size:20 final size:20
Alignment explanation
Indices: 103144858--103144934 Score: 59
Period size: 20 Copynumber: 3.7 Consensus size: 20
103144848 ATTATTATGT
*
103144858 TTCTATTTATATTTTTTTTA
1 TTCTATTTATATTTTATTTA
*
103144878 TTCTA-ATACTATTATTATTTA
1 TTCTATTTA-TATT-TTATTTA
103144899 -TCTATTTATATTTCTACTATTA
1 TTCTATTTATATTT-TA-T-TTA
* *
103144921 TTATATTTCTATTT
1 TTCTATTTATATTT
103144935 ATTATATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.07
20 19 0.42
21 9 0.20
22 3 0.07
23 11 0.24
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (20 bp):
TTCTATTTATATTTTATTTA
Found at i:103144903 original size:14 final size:13
Alignment explanation
Indices: 103144847--103144985 Score: 52
Period size: 14 Copynumber: 9.9 Consensus size: 13
103144837 TTATTGCTAT
103144847 TATTATTATGTTTC
1 TATTATTAT-TTTC
103144861 TATT-TATATTTT-
1 TATTAT-TATTTTC
* * * *
103144873 TTTTATTCTAATAC
1 TATTATTAT-TTTC
103144887 TATTATTATTTATC
1 TATTATTATTT-TC
103144901 TATT-TATATTTCTAC
1 TATTAT-TATTT-T-C
103144916 TATTATTATATTTC
1 TATTATTAT-TTTC
*
103144930 TATTTATTATATTTT
1 TA-TTATTAT-TTTC
* *
103144945 TATCTCTATTTATATAC
1 TA--T-TA-TTATTTTC
*
103144962 TAATATTATTTTC
1 TATTATTATTTTC
103144975 -ATTATTATTTT
1 TATTATTATTTT
103144986 TCTTATATAT
Statistics
Matches: 94, Mismatches: 18, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
12 15 0.16
13 14 0.15
14 30 0.32
15 22 0.23
16 4 0.04
17 5 0.05
18 4 0.04
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (13 bp):
TATTATTATTTTC
Found at i:103144906 original size:29 final size:28
Alignment explanation
Indices: 103144864--103144937 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
103144854 ATGTTTCTAT
*
103144864 TTATATTT-TTTTTATTCTAATACTATTA
1 TTATATTTCTATTTATT-TAATACTATTA
**
103144892 TTAT-TTATCTATTTATATTTCTACTATTA
1 TTATATT-TCTATTTAT-TTAATACTATTA
103144921 TTATATTTCTATTTATT
1 TTATATTTCTATTTATT
103144938 ATATTTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 2 0.05
28 6 0.15
29 28 0.72
30 3 0.08
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (28 bp):
TTATATTTCTATTTATTTAATACTATTA
Found at i:103144940 original size:15 final size:15
Alignment explanation
Indices: 103144849--103144943 Score: 64
Period size: 15 Copynumber: 6.7 Consensus size: 15
103144839 ATTGCTATTA
*
103144849 TTATTATGTTTCTAT
1 TTATTATATTTCTAT
103144864 TTA-TAT-TTT-T-T
1 TTATTATATTTCTAT
* * *
103144875 TTATTCTAATACTA-
1 TTATTATATTTCTAT
103144889 TTATTAT-TTATCTA-
1 TTATTATATT-TCTAT
103144903 -T-TTATATTTCTACT
1 TTATTATATTTCTA-T
103144917 ATTATTATATTTCTAT
1 -TTATTATATTTCTAT
103144933 TTATTATATTT
1 TTATTATATTT
103144944 TTATCTCTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 22
0.69 0.07 0.24
Matches are distributed among these distances:
11 4 0.06
12 11 0.17
13 8 0.13
14 13 0.21
15 14 0.22
16 2 0.03
17 11 0.17
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.65
Consensus pattern (15 bp):
TTATTATATTTCTAT
Found at i:103144942 original size:23 final size:23
Alignment explanation
Indices: 103144916--103144982 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 23
103144906 ATATTTCTAC
103144916 TATTATTATATTTCTATTTATTA
1 TATTATTATATTTCTATTTATTA
*
103144939 TATT-TT-TATCTCTATTTATATA
1 TATTATTATATTTCTATTTAT-TA
*
103144961 CTAATATTAT-TTTC-A-TTATTA
1 -TATTATTATATTTCTATTTATTA
103144982 T
1 T
103144983 TTTTCTTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
21 14 0.38
22 8 0.22
23 8 0.22
24 5 0.14
25 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTATTATATTTCTATTTATTA
Found at i:103145049 original size:15 final size:16
Alignment explanation
Indices: 103145026--103145062 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
103145016 AACATTCTAT
103145026 TTATT-TATTTATTTA
1 TTATTATATTTATTTA
*
103145041 TT-TTATATTTTTTTA
1 TTATTATATTTATTTA
103145056 TTATTAT
1 TTATTAT
103145063 GTATTTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 2 0.11
15 13 0.68
16 4 0.21
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTATATTTATTTA
Found at i:103145067 original size:18 final size:19
Alignment explanation
Indices: 103145027--103145069 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
103145017 ACATTCTATT
* *
103145027 TATTTATTTATTTATTTTA
1 TATTTTTTTATTTATTATA
*
103145046 TATTTTTTTA-TTATTATG
1 TATTTTTTTATTTATTATA
103145064 TATTTT
1 TATTTT
103145070 AACTTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
TATTTTTTTATTTATTATA
Found at i:103145149 original size:24 final size:23
Alignment explanation
Indices: 103145051--103145149 Score: 62
Period size: 24 Copynumber: 4.2 Consensus size: 23
103145041 TTTTATATTT
*
103145051 TTTTAT-TATTATGTATTTTAAC
1 TTTTATATATTATGTATTTAAAC
* * *
103145073 TTTT-TATATAACGCTCATTTCAAAT
1 TTTTATATATTATG-T-ATTT-AAAC
*
103145098 TTTTATACATTACT-TACTTTAATA-
1 TTTTATATATTA-TGTA-TTTAA-AC
103145122 TTTTATATATTATGTATTTCAAAC
1 TTTTATATATTATGTATTT-AAAC
103145146 TTTT
1 TTTT
103145150 TTTTACACAT
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
21 1 0.02
22 9 0.16
23 6 0.10
24 26 0.45
25 11 0.19
26 5 0.09
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (23 bp):
TTTTATATATTATGTATTTAAAC
Found at i:103147791 original size:14 final size:15
Alignment explanation
Indices: 103147772--103147802 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
103147762 TAATACACAT
103147772 AATTGTTCA-ATAAA
1 AATTGTTCATATAAA
103147786 AATTGTTCATATAAA
1 AATTGTTCATATAAA
103147801 AA
1 AA
103147803 AAAAAGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
AATTGTTCATATAAA
Found at i:103149822 original size:15 final size:15
Alignment explanation
Indices: 103149798--103149827 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103149788 GGTATGGAGC
103149798 GATTACGGTAATTGT
1 GATTACGGTAATTGT
*
103149813 GATTATGGTAATTGT
1 GATTACGGTAATTGT
103149828 TTGCCCTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
GATTACGGTAATTGT
Found at i:103149991 original size:9 final size:9
Alignment explanation
Indices: 103149973--103150003 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
103149963 ATATTTACTT
103149973 AAAT-TTAA
1 AAATATTAA
103149981 AAATATTAA
1 AAATATTAA
103149990 AAATATTAA
1 AAATATTAA
103149999 AAATA
1 AAATA
103150004 AATAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATATTAA
Found at i:103151082 original size:13 final size:13
Alignment explanation
Indices: 103151064--103151089 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103151054 TTTTCTTCAT
103151064 TGATTCCTATGTC
1 TGATTCCTATGTC
103151077 TGATTCCTATGTC
1 TGATTCCTATGTC
103151090 ATTAACTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
TGATTCCTATGTC
Found at i:103156212 original size:31 final size:32
Alignment explanation
Indices: 103156162--103156228 Score: 86
Period size: 31 Copynumber: 2.1 Consensus size: 32
103156152 TAAGCCTTGT
103156162 AAAAATTTTAAAAATTTTAATTA-AATCCC-TC
1 AAAAATTTTAAAAATTTTAATTAGAA-CCCTTC
*
103156193 AAAAGTTTTGAAAAA-TTTAATTAGAACCCTTC
1 AAAAATTTT-AAAAATTTTAATTAGAACCCTTC
103156225 AAAA
1 AAAA
103156229 TTTGATGCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
31 19 0.59
32 13 0.41
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.34
Consensus pattern (32 bp):
AAAAATTTTAAAAATTTTAATTAGAACCCTTC
Found at i:103158857 original size:24 final size:24
Alignment explanation
Indices: 103158812--103158858 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
103158802 ATAAAAACTA
*
103158812 AACCCTAAAAACTTGAAAACAAAG
1 AACCCTAAAAACGTGAAAACAAAG
*
103158836 AACCCTCAAAACGT-AAACACAAA
1 AACCCTAAAAACGTGAAA-ACAAA
103158859 ATTCTCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.57, C:0.26, G:0.06, T:0.11
Consensus pattern (24 bp):
AACCCTAAAAACGTGAAAACAAAG
Found at i:103162231 original size:38 final size:37
Alignment explanation
Indices: 103162170--103162350 Score: 184
Period size: 38 Copynumber: 4.7 Consensus size: 37
103162160 ATTTGATGTG
* *
103162170 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TGTGCTGGAATTA
103162210 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGC-TTGTGCTGG-AATTA
* *
103162248 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGAATTA
* * *
103162286 TATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGG-CTTGTGCTGGAATTA
* * *
103162324 TATCTGAGTTTAAAGTCCCGTAGGCTT
1 TATCCG-GGTTAAA-TCCCGCAGGCTT
103162351 CATGCTGGTG
Statistics
Matches: 124, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
37 3 0.02
38 87 0.70
39 18 0.15
40 16 0.13
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (37 bp):
TATCCGGGTTAAATCCCGCAGGCTTGTGCTGGAATTA
Found at i:103164358 original size:3 final size:3
Alignment explanation
Indices: 103164343--103164632 Score: 76
Period size: 3 Copynumber: 95.7 Consensus size: 3
103164333 TTCAAAATTA
* *
103164343 ATT ATT TTT ATT ATT ATT TTCT ATT ATT A-T ATTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * * * * * * *
103164389 GTT -TT ACT ACT ATT ACT ACT ATT ATC CTT GTT GACAT AGT A-T ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -A-TT ATT ATT A-TT
* * * * **
103164435 ATT -TCT ATT ATT TTCT ATT ATT GTC ATT ATT AAT ATAT ACC ATT ATT
1 ATT AT-T ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
* * * *
103164482 ATT ATT AAT A-T ATT ATT ATT ATT ATT AAT ATT ATC ATT ATTT ACAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT A-TT
* * * * * * * * **
103164528 GTT ATT ATTT CTT TTT CTT TTT CTT TTT ATT ATG GCT -TT ATT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
103164573 ATT ACT ATT ATT ACT ATT TTT ATCT -TT ATT ATT ATT ATT A-T CTT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
*
103164617 ATT -TT ATT ACT ATT AT
1 ATT ATT ATT ATT ATT AT
103164633 CAATTTTGTA
Statistics
Matches: 207, Mismatches: 60, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
2 14 0.07
3 173 0.84
4 19 0.09
5 1 0.00
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:103164385 original size:31 final size:32
Alignment explanation
Indices: 103164344--103164403 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
103164334 TCAAAATTAA
* *
103164344 TTATTTTTATTATTATTTT-CTATTATTATAT
1 TTATTATTATTATTATTTTACTACTATTATAT
*
103164375 TTATTATTATTATTGTTTTACTACTATTA
1 TTATTATTATTATTATTTTACTACTATTA
103164404 CTACTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (32 bp):
TTATTATTATTATTATTTTACTACTATTATAT
Found at i:103164697 original size:16 final size:18
Alignment explanation
Indices: 103164666--103164698 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
103164656 TTGTATTATT
103164666 TCTATTATTATATTTTCA
1 TCTATTATTATATTTTCA
103164684 TCTA-TATT-TATTTTC
1 TCTATTATTATATTTTC
103164699 TTATTACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (18 bp):
TCTATTATTATATTTTCA
Found at i:103164725 original size:17 final size:17
Alignment explanation
Indices: 103164700--103164738 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
103164690 TTTATTTTCT
*
103164700 TATTACTTATCTATTTA
1 TATTTCTTATCTATTTA
*
103164717 TATTTCTTATTTATTTA
1 TATTTCTTATCTATTTA
103164734 TATTT
1 TATTT
103164739 TTGTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTCTTATCTATTTA
Found at i:103166822 original size:26 final size:26
Alignment explanation
Indices: 103166793--103166874 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
103166783 TGGTACAAAT
103166793 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103166819 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103166845 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103166871 TGAT
1 TGAT
103166875 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103171835 original size:19 final size:20
Alignment explanation
Indices: 103171794--103171845 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
103171784 GCCTTTTTTT
*
103171794 TGCATT-CATTTCATTCATT
1 TGCATTACATTTCATTCATA
*
103171813 TGCATTACATTTCA-TCGTA
1 TGCATTACATTTCATTCATA
*
103171832 TGCATTAAATTTCA
1 TGCATTACATTTCA
103171846 CGAAAAAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 22 0.76
20 7 0.24
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (20 bp):
TGCATTACATTTCATTCATA
Found at i:103179969 original size:44 final size:42
Alignment explanation
Indices: 103179808--103180036 Score: 138
Period size: 44 Copynumber: 5.3 Consensus size: 42
103179798 TCCATGAGGT
* * * *
103179808 AGTAATGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGC
1 AGTAGTGGAGCAGATCGAAG-CCAC-AATCTTATCTTCCTAAGC
** ** * * *
103179852 AGTAGTGGAATAGATTTAAGCCACCATCCTATCTGCCTAAGC
1 AGTAGTGGAGCAGATCGAAGCCACAATCTTATCTTCCTAAGC
* * * ***
103179894 AGTAATGGAGTAG-GCTGAAAATTACAGATCTTATCTTCCTAAGC
1 AGTAGTGGAGCAGATC-G-AAGCCACA-ATCTTATCTTCCTAAGC
* ** *
103179938 AGTAGTGAAGCAGATCGAAGACGGCGAATCTTGTC-TCTCTAAGC
1 AGTAGTGGAGCAGATCGAAG-CCAC-AATCTTATCTTC-CTAAGC
* ** * *
103179982 AGTAGTGGAGCAAATTTAAGCCACCATCTTATCTCCCTAAGC
1 AGTAGTGGAGCAGATCGAAGCCACAATCTTATCTTCCTAAGC
103180024 AGTAGTGGAGCAG
1 AGTAGTGGAGCAG
103180037 GTTGAAACCA
Statistics
Matches: 137, Mismatches: 40, Indels: 18
0.70 0.21 0.09
Matches are distributed among these distances:
42 50 0.36
43 14 0.10
44 71 0.52
45 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (42 bp):
AGTAGTGGAGCAGATCGAAGCCACAATCTTATCTTCCTAAGC
Found at i:103179999 original size:130 final size:132
Alignment explanation
Indices: 103179781--103180043 Score: 370
Period size: 130 Copynumber: 2.0 Consensus size: 132
103179771 AACATCGGTG
* * *
103179781 AATTCACAGATCTTATCTCCATGAGGTAGTAATGGAGCAGATCGAAGACGACGAATCTTGTCTCC
1 AATTCACAGATCTTATCTCCATGAAGCAGTAATGAAGCAGATCGAAGACGACGAATCTTGTCTCC
* * * *
103179846 CTAAGCAGTAGTGGAATAGATTTAAGCCACCATCCTATCTGCCTAAGCAGTAATGGAGTAGGCTG
66 CTAAGCAGTAGTGGAACAAATTTAAGCCACCATCCTATCTCCCTAAGCAGTAATGGAGCAGGCTG
103179911 AA
131 AA
* *
103179913 AATT-ACAGATCTTATCTTCC-T-AAGCAGTAGTGAAGCAGATCGAAGACGGCGAATCTTGTCTC
1 AATTCACAGATCTTATC-TCCATGAAGCAGTAATGAAGCAGATCGAAGACGACGAATCTTGTCTC
* * * * *
103179975 TCTAAGCAGTAGTGGAGCAAATTTAAGCCACCATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTT
65 CCTAAGCAGTAGTGGAACAAATTTAAGCCACCATCCTATCTCCCTAAGCAGTAATGGAGCAGGCT
103180040 GAA
130 GAA
103180043 A
1 A
103180044 CCATAATTCG
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
130 96 0.83
131 13 0.11
132 7 0.06
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (132 bp):
AATTCACAGATCTTATCTCCATGAAGCAGTAATGAAGCAGATCGAAGACGACGAATCTTGTCTCC
CTAAGCAGTAGTGGAACAAATTTAAGCCACCATCCTATCTCCCTAAGCAGTAATGGAGCAGGCTG
AA
Found at i:103180173 original size:88 final size:88
Alignment explanation
Indices: 103180048--103180577 Score: 765
Period size: 88 Copynumber: 6.0 Consensus size: 88
103180038 TTGAAACCAT
* * * *
103180048 AATTCGTATTTTCTTGAAGTTTCAACGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
* * * *
103180113 CCATTGGAGTGGGTCGAAGCCCC
66 GCATTGGAGCGGCTCGAAGCCAC
* * * * * *
103180136 AATTTGTATCTCCTTAAAGTTTCAGCAGAGTATATCGATGCTACAAATCTCTTCTCCCTAAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
103180201 GCATTGGAGCGGCTCGAAGCCAC
66 GCATTGGAGCGGCTCGAAGCCAC
*
103180224 AATTCGTATCTCCTTGAAG-TTCTAGCGGAGTAAATCGAGGCTACAAATCTCTTCTCCCTGAAAT
1 AATTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAAT
* * *
103180288 GGTATTGGAGCGGCTCAAAACCAC
65 GGCATTGGAGCGGCTCGAAGCCAC
* *
103180312 AATTCGTATCTCATTGAAGTTTCAGCGGAGTAGATCGACGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
*
103180377 GCATTGGAGCAGCTCGAAGCCAC
66 GCATTGGAGCGGCTCGAAGCCAC
* * * **
103180400 AATTCGTATCTCCTTAAAGTTCCAGCGGAGTAGATCGATGCTACAAATCTCTTCTCATTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
*
103180465 GCATTGGAGCGACTCGAAGCCAC
66 GCATTGGAGCGGCTCGAAGCCAC
* * *
103180488 AATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGCTACAAATCTCTTCTTCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
*
103180553 GCATTGGAGCGGCTTGAAGCCAC
66 GCATTGGAGCGGCTCGAAGCCAC
103180576 AA
1 AA
103180578 ATCACAAACC
Statistics
Matches: 396, Mismatches: 44, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
87 3 0.01
88 390 0.98
89 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (88 bp):
AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATG
GCATTGGAGCGGCTCGAAGCCAC
Found at i:103180749 original size:96 final size:95
Alignment explanation
Indices: 103180631--103180803 Score: 231
Period size: 96 Copynumber: 1.8 Consensus size: 95
103180621 AGTTACAAGT
* *
103180631 CTTATCTCCCTAAAGTTACAGTGGAGCAGACTGTAGATAGCGAA-TCTTATCTCCCTTAAGTTGC
1 CTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATA-C-AAGTCTTATCTCCCTGAAGTTGC
* *
103180695 AGTGGAGTAGATTGAAGCTAGAAATCACAAAC
64 AGTAGAGCAGATTGAAGCTAGAAATCACAAAC
* * ** * *
103180727 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAATTTGCAG
1 CTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
103180792 TAGAGCAGATTG
66 TAGAGCAGATTG
103180804 GAGATAGCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
94 2 0.03
95 31 0.47
96 33 0.50
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (95 bp):
CTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
TAGAGCAGATTGAAGCTAGAAATCACAAAC
Found at i:103180798 original size:140 final size:140
Alignment explanation
Indices: 103180566--103180817 Score: 387
Period size: 140 Copynumber: 1.8 Consensus size: 140
103180556 TTGGAGCGGC
103180566 TTGAAGCCACAAATCACAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGT
1 TTGAAGCCACAAATCACAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGT
* * *
103180631 CTTATCTCCCTAAAGTTACAGTGGAGCAGACTGTAGATAGCGAATCTTATCTCCCTTAAGTTGCA
66 CTTATCTCCCTAAAGTTACAGTAGAGCAGACTGGAGATAGCAAATCTTATCTCCCTTAAGTTGCA
103180696 GTGGAGTAGA
131 GTGGAGTAGA
* * * * **
103180706 TTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 TTGAAGCCACAAATCACAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGT
* * * *
103180771 CTTATCTCCCTGAATTTGCAGTAGAGCAGATTGGAGATAGCAAATCT
66 CTTATCTCCCTAAAGTTACAGTAGAGCAGACTGGAGATAGCAAATCT
103180818 CATTTCTCTG
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
140 99 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (140 bp):
TTGAAGCCACAAATCACAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGT
CTTATCTCCCTAAAGTTACAGTAGAGCAGACTGGAGATAGCAAATCTTATCTCCCTTAAGTTGCA
GTGGAGTAGA
Found at i:103180840 original size:140 final size:140
Alignment explanation
Indices: 103180531--103180851 Score: 383
Period size: 140 Copynumber: 2.3 Consensus size: 140
103180521 ATCAAGGCTA
* * * * * *
103180531 CAAATCTCTTCTTCCTGAA-ATGGCATTGGAGCGGCTTGAAGCCACAAATCACAAACCTTATCTC
1 CAAATCTCATCTCCCTGAAGAT-GCAGTGGAACAGATTGAAGCCACAAATCACAAACCTTATCTC
*
103180595 CCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAG
65 CCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGTCTTATCTCCCTAAAGTTACAGTAGAGCAG
*
103180660 ACTGTAGATAG
130 ACTGGAGATAG
* * * * ** * *
103180671 CGAATCTTATCTCCCTTAAGTTGCAGTGGAGTAGATTGAAGCTAGAAATCACAAACCTTATCTCC
1 CAAATCTCATCTCCCTGAAGATGCAGTGGAACAGATTGAAGCCACAAATCACAAACCTTATCTCC
* * ** * * *
103180736 CTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAATTTGCAGTAGAGCAGA
66 CTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGTCTTATCTCCCTAAAGTTACAGTAGAGCAGA
*
103180801 TTGGAGATAG
131 CTGGAGATAG
* * *
103180811 CAAATCTCATTTCTCTGAAGATGCGGTGGAACAGATTGAAG
1 CAAATCTCATCTCCCTGAAGATGCAGTGGAACAGATTGAAG
103180852 TTATAAATAG
Statistics
Matches: 149, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
140 148 0.99
141 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (140 bp):
CAAATCTCATCTCCCTGAAGATGCAGTGGAACAGATTGAAGCCACAAATCACAAACCTTATCTCC
CTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGTCTTATCTCCCTAAAGTTACAGTAGAGCAGA
CTGGAGATAG
Found at i:103180978 original size:132 final size:134
Alignment explanation
Indices: 103180823--103181108 Score: 452
Period size: 137 Copynumber: 2.1 Consensus size: 134
103180813 AATCTCATTT
* **
103180823 CTCTGAAGA-TGCGGTGGAACAGATTGAAGTTATAAAT-AGATCTTATCCCT-TGAAGTTTTAGT
1 CTCTGAA-ATTGCAGTGGAACAGATTGAAGTTATAAATAAGATCTTATCCCTCTGAAGTTACAGT
*
103180885 AGAGCAGATCATAGAAAATCTTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAACCT
65 AGAGCAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAACCT
103180950 TATCC
130 TATCC
*
103180955 CTCTGAAATTGCAGTGGAACAGATTGAAGTTATAAATAAACAGATCTTATCTCTCTGAAGTTACA
1 CTCTGAAATTGCAGTGGAACAGATTGAAGTTATAAAT--A-AGATCTTATCCCTCTGAAGTTACA
103181020 GTAGAGCAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAAC
63 GTAGAGCAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAAC
103181085 CTTATCC
128 CTTATCC
* *
103181092 CCCTGAAATTACAGTGG
1 CTCTGAAATTGCAGTGG
103181109 GGCAAGTTAA
Statistics
Matches: 141, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
131 1 0.01
132 34 0.24
136 12 0.09
137 94 0.67
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (134 bp):
CTCTGAAATTGCAGTGGAACAGATTGAAGTTATAAATAAGATCTTATCCCTCTGAAGTTACAGTA
GAGCAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAACCTT
ATCC
Found at i:103182694 original size:31 final size:32
Alignment explanation
Indices: 103182653--103182712 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
103182643 TAAAAATTAA
* *
103182653 TTATTTTTATTATTATTTT-CTATTATTATAT
1 TTATTATTATTATTATTTTACTACTATTATAT
*
103182684 TTATTATTATTATTGTTTTACTACTATTA
1 TTATTATTATTATTATTTTACTACTATTA
103182713 CTACTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (32 bp):
TTATTATTATTATTATTTTACTACTATTATAT
Found at i:103182791 original size:19 final size:18
Alignment explanation
Indices: 103182769--103182817 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
103182759 TATTATTGTC
103182769 ATTATTAATATATACCATT
1 ATTATTAATATATA-CATT
*
103182788 ATTATTAATAATATATATT
1 ATTATTAAT-ATATACATT
103182807 ATTATTAATAT
1 ATTATTAATAT
103182818 TATCGTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 2 0.07
19 21 0.75
20 5 0.18
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTAATATATACATT
Found at i:103182794 original size:22 final size:22
Alignment explanation
Indices: 103182769--103182819 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
103182759 TATTATTGTC
103182769 ATTATTAATATATACCATTATT
1 ATTATTAATATATACCATTATT
* **
103182791 ATTAATAATATATATTATTATT
1 ATTATTAATATATACCATTATT
*
103182813 AATATTA
1 ATTATTA
103182820 TCGTTATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTATTAATATATACCATTATT
Found at i:103182806 original size:16 final size:16
Alignment explanation
Indices: 103182787--103182817 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103182777 TATATACCAT
103182787 TATTATTAATAATATA
1 TATTATTAATAATATA
*
103182803 TATTATTATTAATAT
1 TATTATTAATAATAT
103182818 TATCGTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTAATAATATA
Found at i:103182876 original size:3 final size:3
Alignment explanation
Indices: 103182870--103182987 Score: 57
Period size: 3 Copynumber: 40.3 Consensus size: 3
103182860 TATTATGGCT
* * * *
103182870 TTA TTA TTA TTA CTA TTA TTA CTA TTT TTA TCT- TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * *
103182915 TTA TTA TCA -TC TTA TT- TTA TTA CTA TTA TCAA TT- TTG TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * *
103182958 CTA TTA CTA TT- GTA TTA TTA CTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
103182988 ATTTTCATCT
Statistics
Matches: 81, Mismatches: 27, Indels: 14
0.66 0.22 0.11
Matches are distributed among these distances:
2 6 0.07
3 72 0.89
4 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:103183036 original size:17 final size:17
Alignment explanation
Indices: 103183011--103183049 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
103183001 TTTATTTTCT
*
103183011 TATTACTTATCTATTTA
1 TATTTCTTATCTATTTA
*
103183028 TATTTCTTATTTATTTA
1 TATTTCTTATCTATTTA
103183045 TATTT
1 TATTT
103183050 TTGTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTCTTATCTATTTA
Found at i:103183074 original size:17 final size:17
Alignment explanation
Indices: 103183042--103183076 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
103183032 TCTTATTTAT
* *
103183042 TTATATTTTTGTTATTA
1 TTATATTTTAGGTATTA
103183059 TTATATTTTAGGTATTA
1 TTATATTTTAGGTATTA
103183076 T
1 T
103183077 ATCTCTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (17 bp):
TTATATTTTAGGTATTA
Found at i:103183111 original size:26 final size:26
Alignment explanation
Indices: 103183055--103183112 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
103183045 TATTTTTGTT
103183055 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
*
103183080 -TCTATTTATA-TTTATGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
103183106 ATTATTT
1 ATTATTT
103183113 TACTATTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 1 0.04
25 11 0.39
26 15 0.54
27 1 0.04
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:103184441 original size:18 final size:20
Alignment explanation
Indices: 103184415--103184460 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
103184405 TTAGTTTGAA
103184415 TTTGT-ATTTAAAAAATTA-
1 TTTGTCATTTAAAAAATTAG
*
103184433 TTT-TCATTTAAAAATTTAG
1 TTTGTCATTTAAAAAATTAG
103184452 TTTGTCATT
1 TTTGTCATT
103184461 GGTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 15 0.62
19 3 0.12
20 5 0.21
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (20 bp):
TTTGTCATTTAAAAAATTAG
Found at i:103184921 original size:43 final size:41
Alignment explanation
Indices: 103184873--103185070 Score: 209
Period size: 43 Copynumber: 4.6 Consensus size: 41
103184863 AAAATTAAAA
* * * *
103184873 AAACGCCGCTAAAGACTATGACTTTTAGCGGCGCTTTTTTCGC
1 AAACGCCGCTAAAGACCA-GACCTTTAGCGGCGC-TTTTCCAC
* * *
103184916 AAACGCCGCTAAAGACCACAGCTTTTAGCGGCGCTTTTCCCC
1 AAACGCCGCTAAAGACCAGA-CCTTTAGCGGCGCTTTTCCAC
103184958 AAAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCTAC
1 -AAACGCCGCTAAAGACCA-GACCTTTAGCGGCGCTTTTCC-AC
* * * *
103185002 AAACGCCGCTATAA-AACAAACCTTTCGCGACGCTTTTCTCAC
1 AAACGCCGCTA-AAGACCAGACCTTTAGCGGCGCTTTTC-CAC
103185044 AAACGCCGCTAAAGACCATGACCTTTA
1 AAACGCCGCTAAAGACCA-GACCTTTA
103185071 AAAAAATATT
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
41 2 0.02
42 40 0.30
43 87 0.65
44 4 0.03
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (41 bp):
AAACGCCGCTAAAGACCAGACCTTTAGCGGCGCTTTTCCAC
Found at i:103185067 original size:85 final size:86
Alignment explanation
Indices: 103184872--103185070 Score: 244
Period size: 86 Copynumber: 2.3 Consensus size: 86
103184862 CAAAATTAAA
* * * * * *
103184872 AAAACGCCGCTAAAGACTATGACTTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAAGACCACAG
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACACAA
* * *
103184937 CTTTTAGCGGCGCTTTTCCCC
66 CCTTTAGCGACGCTTTTCCAC
*
103184958 AAAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTC-CTACAAACGCCGCTATAA-AACA-
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTC-ACAAACGCCGCTA-AAGAACAC
*
103185020 AACCTTTCGCGACGCTTTTCTCAC
64 AACCTTTAGCGACGCTTTTC-CAC
103185044 -AAACGCCGCTAAAGACCATGACCTTTA
1 AAAACGCCGCTAAAGACCATGACCTTTA
103185071 AAAAAATATT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
85 43 0.44
86 53 0.54
87 2 0.02
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (86 bp):
AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAACACAA
CCTTTAGCGACGCTTTTCCAC
Found at i:103188333 original size:16 final size:16
Alignment explanation
Indices: 103188312--103188347 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
103188302 TTATGCAACT
103188312 TTAATTAATCCCATCG
1 TTAATTAATCCCATCG
103188328 TTAATTAATCCCATCG
1 TTAATTAATCCCATCG
103188344 TTAA
1 TTAA
103188348 CTGGAGCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (16 bp):
TTAATTAATCCCATCG
Found at i:103188642 original size:3 final size:3
Alignment explanation
Indices: 103188634--103188703 Score: 54
Period size: 3 Copynumber: 23.7 Consensus size: 3
103188624 ATCTTCACTC
* * * * *
103188634 TCT TCT TCT TCC TCC TCT CCC TCT TC- TCT TCC TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
103188681 TCT TCC TCGT TCT CCT TC- TCT TC
1 TCT TCT TC-T TCT TCT TCT TCT TC
103188704 AATATCTATT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
2 4 0.08
3 46 0.88
4 2 0.04
ACGTcount: A:0.00, C:0.44, G:0.01, T:0.54
Consensus pattern (3 bp):
TCT
Found at i:103189152 original size:7 final size:7
Alignment explanation
Indices: 103189140--103189174 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
103189130 ATATGGACTA
103189140 AAATTTT
1 AAATTTT
103189147 AAATTTT
1 AAATTTT
*
103189154 AAATATT
1 AAATTTT
103189161 AAATTTT
1 AAATTTT
*
103189168 AAGTTTT
1 AAATTTT
103189175 TTATTTTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:103190980 original size:27 final size:27
Alignment explanation
Indices: 103190948--103191222 Score: 358
Period size: 27 Copynumber: 10.2 Consensus size: 27
103190938 AAAGTACTCC
103190948 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
103190975 CAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
103191002 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
103191029 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
103191056 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
103191083 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
103191110 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
103191137 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
103191164 C-ATTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
103191191 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
103191218 TGATT
1 CGATT
103191223 ATGAAATTAC
Statistics
Matches: 215, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
26 3 0.01
27 209 0.97
28 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:103191257 original size:27 final size:27
Alignment explanation
Indices: 103191227--103191422 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
103191217 TTGATTATGA
*
103191227 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
103191254 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
103191281 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
103191308 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
103191335 AATTATCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
103191362 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
103191389 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
103191416 AATTACC
1 AATTACC
103191423 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:103191659 original size:27 final size:26
Alignment explanation
Indices: 103191621--103191703 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 26
103191611 TGGAGGAAGC
103191621 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
103191648 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* *
103191674 GTATCTGGTGACTCA-GTCACAATATCT
1 GT-TCTGGTGGCT-ATGCCACAATATCT
103191701 GTT
1 GTT
103191704 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:103191823 original size:22 final size:22
Alignment explanation
Indices: 103191791--103191849 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
103191781 CCCGTTATTA
*
103191791 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
103191813 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
103191835 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
103191850 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:103192044 original size:27 final size:25
Alignment explanation
Indices: 103192014--103192087 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
103192004 TAGGTGGGTT
*
103192014 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
103192041 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
103192068 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
103192088 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:103192214 original size:6 final size:6
Alignment explanation
Indices: 103192205--103192475 Score: 222
Period size: 6 Copynumber: 44.8 Consensus size: 6
103192195 TTGCATTCAC
* *
103192205 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
103192254 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
103192302 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * * *
103192351 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTA ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
103192400 ATTCTG ATTCTG A-TCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
*
103192447 ATTCTG -TTACTG ATTCTG ATTCTA ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
103192476 CATTTTGGTT
Statistics
Matches: 214, Mismatches: 27, Indels: 48
0.74 0.09 0.17
Matches are distributed among these distances:
5 21 0.10
6 174 0.81
7 15 0.07
8 4 0.02
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:103192267 original size:30 final size:30
Alignment explanation
Indices: 103192205--103192475 Score: 316
Period size: 30 Copynumber: 9.4 Consensus size: 30
103192195 TTGCATTCAC
* *
103192205 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
103192236 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
103192266 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
103192290 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
103192321 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
103192351 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * * *
103192375 ATTCTAATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
103192406 ATTCTGA-TCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
103192435 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
103192465 ATTCTAATTCT
1 ATTCTGATTCT
103192476 CATTTTGGTT
Statistics
Matches: 208, Mismatches: 17, Indels: 31
0.81 0.07 0.12
Matches are distributed among these distances:
24 44 0.21
26 2 0.01
29 16 0.08
30 92 0.44
31 54 0.26
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:103192345 original size:85 final size:85
Alignment explanation
Indices: 103192205--103192475 Score: 499
Period size: 85 Copynumber: 3.2 Consensus size: 85
103192195 TTGCATTCAC
103192205 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
103192270 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
103192290 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
103192355 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* * *
103192375 ATTCTAATTTTGATTCTGTCACCTAATTCTGATTCTGA-TCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
103192439 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
103192459 ATTCTGATTCTAATTCT
1 ATTCTGATTCTGATTCT
103192476 CATTTTGGTT
Statistics
Matches: 180, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
84 59 0.33
85 121 0.67
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:103193718 original size:3 final size:3
Alignment explanation
Indices: 103193710--103193753 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
103193700 TTAAATAGTA
103193710 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
103193754 AAGAGAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:103196846 original size:2 final size:2
Alignment explanation
Indices: 103196839--103196870 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
103196829 AAGACAATAA
103196839 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103196871 TACCTTTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103198590 original size:241 final size:241
Alignment explanation
Indices: 103198167--103198653 Score: 893
Period size: 241 Copynumber: 2.0 Consensus size: 241
103198157 ATGAATTAAT
103198167 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
103198232 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
* **
103198297 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATTTTAAAATTTTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
103198362 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
103198408 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
103198473 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGTTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
103198538 CTGTAAGATATAATGGATCCTCTCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
* * *
103198603 AAAAAGACTTGGAAGAAGTTCTATCGATCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
103198649 TTTAT
1 TTTAT
103198654 AACCTTAATT
Statistics
Matches: 237, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
241 237 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:103198900 original size:9 final size:9
Alignment explanation
Indices: 103198832--103198998 Score: 127
Period size: 9 Copynumber: 17.6 Consensus size: 9
103198822 ATTGATCATT
*
103198832 ACTTAAATA
1 ACTTACATA
*
103198841 AATTACATA
1 ACTTACATA
*
103198850 ACTTATATA
1 ACTTACATA
* *
103198859 ACTCATATA
1 ACTTACATA
*
103198868 ACTTACACA
1 ACTTACATA
*
103198877 ATTTACATAACA
1 ACTTACAT---A
103198889 ACTTACATA
1 ACTTACATA
*
103198898 ACTCACATA
1 ACTTACATA
103198907 ACTTACATA
1 ACTTACATA
*
103198916 ATTTACATAACA
1 ACTTACAT---A
103198928 ACTTACATA
1 ACTTACATA
*
103198937 ACTCACATA
1 ACTTACATA
103198946 ACTTACATA
1 ACTTACATA
*
103198955 ATTTACATA
1 ACTTACATA
*
103198964 ACTCACATA
1 ACTTACATA
* *
103198973 ACGTACACAACA
1 AC-T-TAC-ATA
103198985 ACTTACATA
1 ACTTACATA
103198994 ACTTA
1 ACTTA
103198999 ACTAATACAT
Statistics
Matches: 126, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
9 99 0.79
10 3 0.02
11 4 0.03
12 20 0.16
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:103198902 original size:39 final size:39
Alignment explanation
Indices: 103198849--103198965 Score: 207
Period size: 39 Copynumber: 3.0 Consensus size: 39
103198839 TAAATTACAT
* * *
103198849 AACTTATATAACTCATATAACTTACACAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
103198888 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
103198927 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
103198966 TCACATAACG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:103198949 original size:57 final size:57
Alignment explanation
Indices: 103198888--103198996 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
103198878 TTTACATAAC
* ** *
103198888 AACTTACATAACTCACATAACTTACATAATTTACATAACAACTTACATAACTCACAT
1 AACTTACATAACTCACATAACTCACATAACGTACACAACAACTTACATAACTCACAT
* *
103198945 AACTTACATAATTTACATAACTCACATAACGTACACAACAACTTACATAACT
1 AACTTACATAACTCACATAACTCACATAACGTACACAACAACTTACATAACT
103198997 TAACTAATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (57 bp):
AACTTACATAACTCACATAACTCACATAACGTACACAACAACTTACATAACTCACAT
Found at i:103198988 original size:39 final size:37
Alignment explanation
Indices: 103198832--103198994 Score: 186
Period size: 39 Copynumber: 4.3 Consensus size: 37
103198822 ATTGATCATT
* * * *
103198832 ACTTAAATAAATTACAT-AACTTATATAACTCATATA
1 ACTTACATAATTTACATAAACTTACATAACTCACATA
*
103198868 ACTTACACAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
103198907 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
* *
103198946 ACTTACATAATTTACAT-AACTCACATAACGTACACAACA
1 ACTTACATAATTTACATAAACTTACATAAC-T-CAC-ATA
103198985 ACTTACATAA
1 ACTTACATAA
103198995 CTTAACTAAT
Statistics
Matches: 113, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
36 25 0.22
37 1 0.01
38 3 0.03
39 84 0.74
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (37 bp):
ACTTACATAATTTACATAAACTTACATAACTCACATA
Found at i:103205363 original size:21 final size:21
Alignment explanation
Indices: 103205333--103205391 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
103205323 CTAAATTAAG
**
103205333 AACCCTTAACCCTTAACCCTTA
1 AACCC-TAACCCTTAAAACTTA
*
103205355 ATCCCTAACACC-TAAAACTTA
1 AACCCTAAC-CCTTAAAACTTA
*
103205376 AACCCCAACCCTTAAA
1 AACCCTAACCCTTAAA
103205392 CCACACTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.07
21 22 0.73
22 6 0.20
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (21 bp):
AACCCTAACCCTTAAAACTTA
Found at i:103205862 original size:16 final size:17
Alignment explanation
Indices: 103205837--103205870 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
103205827 GGGGATATAA
*
103205837 TTTAGTGTTT-AGGGTT
1 TTTAGGGTTTAAGGGTT
103205853 TTTAGGGTTTAAGGGTT
1 TTTAGGGTTTAAGGGTT
103205870 T
1 T
103205871 ACTCTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (17 bp):
TTTAGGGTTTAAGGGTT
Found at i:103206046 original size:42 final size:40
Alignment explanation
Indices: 103205941--103206071 Score: 147
Period size: 41 Copynumber: 3.2 Consensus size: 40
103205931 GTTATATGAC
* * * * *
103205941 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCGATATTGCTCT-AT
* *
103205982 TTTTAGCAGCGATTTATA-AAAAAACGCCGATATTTCTCTAT
1 TTTTAGCGGCG-TTT-TACAAAAAACGCCGATATTGCTCTAT
*
103206023 TTTTAGCGGCGTTTTAACAAAAAACGCCGATATTGCTCCAT
1 TTTTAGCGGCGTTTT-ACAAAAAACGCCGATATTGCTCTAT
103206064 TTTTAGCG
1 TTTTAGCG
103206072 TGCTCTGTGT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 4 0.05
41 50 0.66
42 19 0.25
43 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGATATTGCTCTAT
Found at i:103207961 original size:29 final size:27
Alignment explanation
Indices: 103207897--103207962 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 27
103207887 TGATTAAACG
103207897 TAATC-ATT-TTAATATTAAATTAATA
1 TAATCTATTATTAATATTAAATTAATA
103207922 TAATACTTATTATTAA-ATTAAATTTAATA
1 TAAT-C-TATTATTAATATTAAA-TTAATA
103207951 TTAAATCTATTA
1 -T-AATCTATTA
103207963 AATTAATAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
25 4 0.12
26 1 0.03
28 9 0.26
29 15 0.44
30 2 0.06
31 3 0.09
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (27 bp):
TAATCTATTATTAATATTAAATTAATA
Found at i:103208016 original size:20 final size:20
Alignment explanation
Indices: 103207946--103208017 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
103207936 AAATTAAATT
* *
103207946 TAATATTAAATCTATTAAAT
1 TAATATTAAATATATTAAAA
* *
103207966 TAATA-GAATATTTATGTATAAGA
1 TAATATTAA-ATATAT-TA-AA-A
103207989 TAAATATTAAATATATTAAAA
1 T-AATATTAAATATATTAAAA
103208010 TAATATTA
1 TAATATTA
103208018 TTTTTGGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
19 2 0.05
20 17 0.41
21 4 0.10
22 4 0.10
23 3 0.07
24 9 0.22
25 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (20 bp):
TAATATTAAATATATTAAAA
Found at i:103215108 original size:5 final size:5
Alignment explanation
Indices: 103215100--103215132 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
103215090 TTCAAAACAA
103215100 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
103215133 GGAAATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:103228309 original size:25 final size:27
Alignment explanation
Indices: 103228272--103228321 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
103228262 TCAAACATGC
103228272 ATTTAGGTCAATTTAAC-CCTAGGGAT
1 ATTTAGGTCAATTTAACTCCTAGGGAT
* *
103228298 ATTTTGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
103228322 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGAT
Found at i:103229902 original size:25 final size:26
Alignment explanation
Indices: 103229808--103229916 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
103229798 CATGAAATTC
103229808 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
103229834 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
103229860 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
103229886 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
103229911 TTATCA
1 TTATCA
103229917 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 22 0.27
26 59 0.73
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:103234107 original size:25 final size:27
Alignment explanation
Indices: 103234070--103234119 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
103234060 TCAAACATGC
103234070 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
103234096 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
103234120 TAAAACTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:103235693 original size:25 final size:26
Alignment explanation
Indices: 103235599--103235707 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
103235589 CATGAAATTC
103235599 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
103235625 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
103235651 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
103235677 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
103235702 TTATCA
1 TTATCA
103235708 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:103238781 original size:26 final size:26
Alignment explanation
Indices: 103238744--103238827 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
103238734 TGATACAAAT
* *
103238744 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
103238770 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
103238796 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
103238822 TGATAA
1 TGATAA
103238828 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:103245719 original size:46 final size:46
Alignment explanation
Indices: 103245662--103245890 Score: 237
Period size: 46 Copynumber: 5.0 Consensus size: 46
103245652 AGTGTGCTCT
** *
103245662 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGAAATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* **
103245708 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGAAATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
103245754 GTGACATGAAATGAATAAGATCATGGTTGAAACATACCATGGCAAC
1 CTGAAATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
103245800 ATGACGA-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGA-AATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * * * *
103245847 ATG-ACGGAAAACGAGTAAAACCATAGTTGAAAGATACTATGGCA
1 CTGAAATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
103245891 TCATGTCGAA
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
46 121 0.75
47 40 0.25
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGAAATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:103245843 original size:93 final size:92
Alignment explanation
Indices: 103245667--103245895 Score: 255
Period size: 93 Copynumber: 2.5 Consensus size: 92
103245657 GCTCTCTGAA
** * * * * **
103245667 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAACATACCATGGCAACATGAGATGAAATGAATAAGACCAT
*
103245732 GGTTGAAAGATACCATGGCAACGTGAC
66 GGTTGAAAGATACCATGGCAACATGAC
*
103245759 ATGAAATGAATAAGATCATGGTTGAAACATACCATGGCAACATGACGA-GAAAATGAATAAGACC
1 ATGAAATGAATAAGACCATGGTTGAAACATACCATGGCAACATGA-GATG-AAATGAATAAGACC
103245823 ATGGTTGAAAGATACCATGGCAACATGAC
64 ATGGTTGAAAGATACCATGGCAACATGAC
* * * * * * * *
103245852 -GGAAAACGAGTAAAACCATAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAACATACCATGGCAACATG
103245896 TCGAAGATAA
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
92 41 0.36
93 74 0.64
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAACATACCATGGCAACATGAGATGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:103247194 original size:15 final size:16
Alignment explanation
Indices: 103247167--103247196 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
103247157 TATAACAATT
103247167 AATATATATTATATAA
1 AATATATATTATATAA
103247183 AATATA-ATTATATA
1 AATATATATTATATA
103247197 TTAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:103247197 original size:22 final size:21
Alignment explanation
Indices: 103247157--103247199 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
103247147 ATGTAATGTT
103247157 TATAACAATTAATATATATTA
1 TATAACAATTAATATATATTA
103247178 TATAA-AATATAATTATATATTA
1 TATAACAAT-TAA-TATATATTA
103247200 GTTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 3 0.15
21 8 0.40
22 9 0.45
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TATAACAATTAATATATATTA
Found at i:103262904 original size:16 final size:16
Alignment explanation
Indices: 103262883--103262914 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103262873 GCCCAATAAC
*
103262883 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
103262899 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
103262915 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:103264385 original size:14 final size:15
Alignment explanation
Indices: 103264362--103264402 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
103264352 TTAATACTAC
103264362 GTTATGTATATATAT
1 GTTATGTATATATAT
*
103264377 -TTATATATAT-TAT
1 GTTATGTATATATAT
103264390 GTTATGTATATAT
1 GTTATGTATATAT
103264403 TTTGAACACC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.14
14 18 0.82
15 1 0.05
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (15 bp):
GTTATGTATATATAT
Found at i:103264619 original size:2 final size:2
Alignment explanation
Indices: 103264612--103264643 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
103264602 TATGTATTAC
103264612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103264644 TCTGATTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103264803 original size:35 final size:31
Alignment explanation
Indices: 103264738--103264831 Score: 89
Period size: 35 Copynumber: 2.8 Consensus size: 31
103264728 CTAGATTTTA
* *
103264738 TATTCTTATATGTATATTATTACATTTATTT
1 TATTCTTATATATATATTATTACATGTATTT
103264769 TATTCTTATCATATATATTATCAATACATGTATTT
1 TATTCTTAT-ATATATATTAT---TACATGTATTT
*
103264804 TATTATATGTATATATATATTATGTACA
1 TA-T-TCT-TATATATATATTAT-TACA
103264832 CATATTAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
31 9 0.17
32 10 0.19
35 16 0.31
36 1 0.02
37 13 0.25
38 3 0.06
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.54
Consensus pattern (31 bp):
TATTCTTATATATATATTATTACATGTATTT
Found at i:103267381 original size:9 final size:9
Alignment explanation
Indices: 103267367--103267402 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
103267357 ATTGATAGGC
103267367 TATTTTATT
1 TATTTTATT
103267376 TATTTT-TT
1 TATTTTATT
103267384 TATTTTATT
1 TATTTTATT
103267393 TATTTTATT
1 TATTTTATT
103267402 T
1 T
103267403 TTGTTGTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TATTTTATT
Found at i:103272978 original size:36 final size:36
Alignment explanation
Indices: 103272909--103272979 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
103272899 GTAAAGTACC
* *
103272909 TCAGTCAAAATAGATTTGAAAGGCTGCTAAACTGAG
1 TCAGTCAAAATAGATTCGAAAGGCTACTAAACTGAG
* * *
103272945 TCAGTCAGAATAGATTCGAAAGGTTACTGAACTGA
1 TCAGTCAAAATAGATTCGAAAGGCTACTAAACTGA
103272980 ATAGAGTCTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (36 bp):
TCAGTCAAAATAGATTCGAAAGGCTACTAAACTGAG
Found at i:103275487 original size:49 final size:49
Alignment explanation
Indices: 103275430--103275524 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
103275420 TGTCCTAACA
103275430 GACTTCATATGTTACCATAGCCCAACTATGGTCTTACACAACATAAGCG
1 GACTTCATATGTTACCATAGCCCAACTATGGTCTTACACAACATAAGCG
*** * *
103275479 GACTTCATATGTTGTTATAGCCCAGCTATGGTCTTATACAACATAA
1 GACTTCATATGTTACCATAGCCCAACTATGGTCTTACACAACATAA
103275525 TCTCGTGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (49 bp):
GACTTCATATGTTACCATAGCCCAACTATGGTCTTACACAACATAAGCG
Found at i:103279002 original size:28 final size:28
Alignment explanation
Indices: 103278962--103279019 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
103278952 ATTTTTTTAA
*
103278962 CTTGAACCCTAAACCATAGATCTTGGAC
1 CTTGAACCCTAAACCATAGACCTTGGAC
*
103278990 CTTGGACCCTAAACCATAGACCTTGGAC
1 CTTGAACCCTAAACCATAGACCTTGGAC
103279018 CT
1 CT
103279020 AGGATTCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (28 bp):
CTTGAACCCTAAACCATAGACCTTGGAC
Found at i:103279495 original size:14 final size:14
Alignment explanation
Indices: 103279457--103279486 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103279447 TGGACTTTAA
103279457 ACCATAGATCCTAG
1 ACCATAGATCCTAG
*
103279471 ACCATGGATCCTAG
1 ACCATAGATCCTAG
103279485 AC
1 AC
103279487 TTTAGATCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (14 bp):
ACCATAGATCCTAG
Found at i:103280555 original size:20 final size:21
Alignment explanation
Indices: 103280530--103280571 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
103280520 AAATTTTCAA
103280530 TAAATA-AAAAATAAAATTAT
1 TAAATATAAAAATAAAATTAT
* *
103280550 TAAATATTAAATTAAAATTAT
1 TAAATATAAAAATAAAATTAT
103280571 T
1 T
103280572 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATATAAAAATAAAATTAT
Found at i:103281372 original size:182 final size:183
Alignment explanation
Indices: 103281101--103281468 Score: 684
Period size: 182 Copynumber: 2.0 Consensus size: 183
103281091 GCGACACCTT
* * *
103281101 AATATTTTATAATAGAGTAGGCGATATCATCCTGACAGCCTGCCGCCGATGTGACTCGGTTATGG
1 AATATTTTATAATAGAGTAGGCGACATCATCCTGACAGCCTGCCGCCGATGTGACTCGGTCACGG
103281166 TTCAAGTTCCAATACCCAATAAAATTAATTATATCAATG-TTTTTTTCAAGCTTTTGGTTTAAAA
66 TTCAAGTTCCAATACCCAATAAAATTAATTATATCAATGTTTTTTTTCAAGCTTTTGGTTTAAAA
*
103281230 CATATATATAAATATTATTTTATTATTATAAAAGAGGGTTGGTTTGGTTCCTC
131 CATATATATAAATATTATTTTATTATTATAAAAGAGGGTTGGTTTGGTCCCTC
103281283 AATATTTTATAATAGAGTAGGCGACATCATCCTGACAGCCTGCCGCCGATGTGACTCGGTCACGG
1 AATATTTTATAATAGAGTAGGCGACATCATCCTGACAGCCTGCCGCCGATGTGACTCGGTCACGG
*
103281348 TTCAAGTTCCAGTACCCAATAAAATTAATTATATCAATGTTTTTTTTCAAGCTTTTGGTTTAAAA
66 TTCAAGTTCCAATACCCAATAAAATTAATTATATCAATGTTTTTTTTCAAGCTTTTGGTTTAAAA
103281413 CATATATATAAATATTATTTTATTATTATAAAAGAGGGTTGGTTTGGTCCCTC
131 CATATATATAAATATTATTTTATTATTATAAAAGAGGGTTGGTTTGGTCCCTC
103281466 AAT
1 AAT
103281469 CCCCCCACAC
Statistics
Matches: 180, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
182 100 0.56
183 80 0.44
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (183 bp):
AATATTTTATAATAGAGTAGGCGACATCATCCTGACAGCCTGCCGCCGATGTGACTCGGTCACGG
TTCAAGTTCCAATACCCAATAAAATTAATTATATCAATGTTTTTTTTCAAGCTTTTGGTTTAAAA
CATATATATAAATATTATTTTATTATTATAAAAGAGGGTTGGTTTGGTCCCTC
Found at i:103281862 original size:22 final size:22
Alignment explanation
Indices: 103281834--103281888 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
103281824 GAATCCACAA
103281834 TCCCCTTCAAGCGACTCTACTT
1 TCCCCTTCAAGCGACTCTACTT
103281856 TCCCCTTCAAGCGACTCTACTT
1 TCCCCTTCAAGCGACTCTACTT
*
103281878 TCCCCTCCAAG
1 TCCCCTTCAAG
103281889 ATATCTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.18, C:0.44, G:0.09, T:0.29
Consensus pattern (22 bp):
TCCCCTTCAAGCGACTCTACTT
Found at i:103289879 original size:3 final size:3
Alignment explanation
Indices: 103289873--103289904 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
103289863 AAAAGCGTCT
103289873 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
103289905 AAGGTTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (3 bp):
TCC
Found at i:103292200 original size:23 final size:23
Alignment explanation
Indices: 103292166--103292228 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
103292156 TGCACTGAAA
* *
103292166 TGCCAC-TACACTTGCATCGTAG
1 TGCCACTTTCACTTGCATCATAG
*
103292188 TGCCACTTTCACTTGCACCATAG
1 TGCCACTTTCACTTGCATCATAG
* *
103292211 TGCCACTATCATTTGCAT
1 TGCCACTTTCACTTGCAT
103292229 TCTTACTCAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 6 0.18
23 28 0.82
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (23 bp):
TGCCACTTTCACTTGCATCATAG
Found at i:103294895 original size:27 final size:27
Alignment explanation
Indices: 103294828--103294906 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
103294818 ATAGCCTCTA
* * *
103294828 TGGCGAACTCTGAAA-AAATAGCATTTG
1 TGGCAAACTCTGAAAGGAA-AGCCTTTG
*
103294855 TGGCGAACTCTGAAAGGAAAGCCTTTG
1 TGGCAAACTCTGAAAGGAAAGCCTTTG
* * * *
103294882 TGGCAAATTTTGAATGGAATGCCTT
1 TGGCAAACTCTGAAAGGAAAGCCTT
103294907 GGAGGCATAC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 42 0.95
28 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (27 bp):
TGGCAAACTCTGAAAGGAAAGCCTTTG
Found at i:103297907 original size:64 final size:64
Alignment explanation
Indices: 103297834--103298044 Score: 146
Period size: 64 Copynumber: 3.2 Consensus size: 64
103297824 CTGGGCCAGA
*
103297834 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* ** * ** *
103297898 GCCCATTTCAAAATACATGCAACATCAATAAACATATG-C-AAG-CCC--ATTTGGGTAACAGTG
1 GCCCATTTC-AGAT---T-----A-CAATAAAC-TGGGCCTTAGCCCCTTATTCAGATAACA---
* *
103297958 GTACTGGGCCAGA-
52 GTA-TGGCCCATAG
*
103297971 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
103298035 GCCCATTTCA
1 GCCCATTTCA
103298045 AAATACATGC
Statistics
Matches: 105, Mismatches: 21, Indels: 42
0.62 0.12 0.25
Matches are distributed among these distances:
62 2 0.02
63 16 0.15
64 23 0.22
65 6 0.06
67 9 0.09
68 1 0.01
69 1 0.01
70 9 0.09
72 6 0.06
73 14 0.13
74 16 0.15
75 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:103298046 original size:137 final size:137
Alignment explanation
Indices: 103297800--103298086 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
103297790 TATTGGGCCT
**
103297800 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
103297865 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
103297930 CATATGC
131 CATATGC
103297937 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
103298002 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
103298067 CATATGC
131 CATATGC
103298074 AAGCCCATTTGGG
1 AAGCCCATTTGGG
103298087 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:103299908 original size:26 final size:26
Alignment explanation
Indices: 103299872--103299981 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
103299862 CATGAAATTC
*
103299872 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
103299898 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
103299924 TTATTATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
103299950 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
103299976 TTATCA
1 TTATCA
103299982 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:103308239 original size:43 final size:45
Alignment explanation
Indices: 103308187--103308270 Score: 127
Period size: 43 Copynumber: 1.9 Consensus size: 45
103308177 AATTATTGTT
*
103308187 ATTAAATTTTATTAAAATTATTATTAAA-ATAA-TAAATAATTTA
1 ATTAAATTTTAATAAAATTATTATTAAATATAATTAAATAATTTA
* *
103308230 ATTATATTTTAATATAATTATTATTAAATATAATTAAATAA
1 ATTAAATTTTAATAAAATTATTATTAAATATAATTAAATAA
103308271 AAAATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 25 0.69
44 4 0.11
45 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (45 bp):
ATTAAATTTTAATAAAATTATTATTAAATATAATTAAATAATTTA
Found at i:103308247 original size:16 final size:16
Alignment explanation
Indices: 103308223--103308265 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
103308213 AAATAATAAA
*
103308223 TAATTTAATTA-TATTT
1 TAATATAATTATTA-TT
103308239 TAATATAATTATTATT
1 TAATATAATTATTATT
*
103308255 AAATATAATTA
1 TAATATAATTA
103308266 AATAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 22 0.92
17 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATATAATTATTATT
Found at i:103308279 original size:43 final size:42
Alignment explanation
Indices: 103308192--103308289 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 42
103308182 TTGTTATTAA
* * *
103308192 ATTTTATTAAAATTATTATTAAAATAATAAATAATTTAATTAT
1 ATTTTAATAAAATTATTATTAAAATAATAAATAA-TAAAATAT
*
103308235 ATTTTAATATAATTATTATTAAATATAATTAAATAA-AAAATAT
1 ATTTTAATAAAATTATTATTAAA-ATAA-TAAATAATAAAATAT
103308278 ATAATTTAATAA
1 AT--TTTAATAA
103308290 CATTCTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
43 28 0.61
44 4 0.09
45 14 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (42 bp):
ATTTTAATAAAATTATTATTAAAATAATAAATAATAAAATAT
Found at i:103309272 original size:42 final size:38
Alignment explanation
Indices: 103309216--103309309 Score: 170
Period size: 38 Copynumber: 2.5 Consensus size: 38
103309206 TGAACTAACA
103309216 GTATGCTGCAGATTGATTGCAAAAAGAAGACATGAAAT
1 GTATGCTGCAGATTGATTGCAAAAAGAAGACATGAAAT
*
103309254 GTATGTTGCAGATTGATTGCAAAAAGAAGACATGAAAT
1 GTATGCTGCAGATTGATTGCAAAAAGAAGACATGAAAT
*
103309292 GTATGCTGCAGATCGATT
1 GTATGCTGCAGATTGATT
103309310 AGAACCAGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (38 bp):
GTATGCTGCAGATTGATTGCAAAAAGAAGACATGAAAT
Found at i:103311455 original size:22 final size:22
Alignment explanation
Indices: 103311430--103311473 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
103311420 AATTATTAAC
*
103311430 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
*
103311452 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAATTAATTTT
103311474 GGTCATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:103313298 original size:20 final size:20
Alignment explanation
Indices: 103313254--103313298 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
103313244 TAGGCTTCGA
* *
103313254 CTCACAGGAGTTGAAGGGAG
1 CTCACAGGAGTTAAAGAGAG
103313274 CTCACAGGAGTTAAAGAGAG
1 CTCACAGGAGTTAAAGAGAG
*
103313294 TTCAC
1 CTCAC
103313299 GGTCCCAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (20 bp):
CTCACAGGAGTTAAAGAGAG
Found at i:103316743 original size:27 final size:27
Alignment explanation
Indices: 103316705--103316812 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 27
103316695 AGCGTCCTAT
* *
103316705 TGGCTATGCCACAAATATCTGATCTAG
1 TGGCTCTGCCACAAATATCTGATCTGG
*
103316732 TGGCTCTGCCACATATATCT-ATTCTGG
1 TGGCTCTGCCACAAATATCTGA-TCTGG
* *
103316759 TGGCTCTGCCACGATTATCTGTATCTGG
1 TGGCTCTGCCACAAATATCTG-ATCTGG
* * * *
103316787 TGACTCTGTCAC-ATTATCTGTTCTGG
1 TGGCTCTGCCACAAATATCTGATCTGG
103316813 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.09
27 47 0.68
28 15 0.22
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGGCTCTGCCACAAATATCTGATCTGG
Found at i:103316778 original size:54 final size:54
Alignment explanation
Indices: 103316705--103316812 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
103316695 AGCGTCCTAT
*
103316705 TGGCTATGCCACAAATATCTG-ATCTAGTGGCTCTGCCACATATATCTATTCTGG
1 TGGCTATGCCACAAATATCTGTATCTAGTGACTCTGCCACAT-TATCTATTCTGG
* * * * * *
103316759 TGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTGTTCTGG
1 TGGCTATGCCACAAATATCTGTATCTAGTGACTCTGCCACATTATCTATTCTGG
103316813 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
TGGCTATGCCACAAATATCTGTATCTAGTGACTCTGCCACATTATCTATTCTGG
Found at i:103322300 original size:70 final size:69
Alignment explanation
Indices: 103322158--103322834 Score: 344
Period size: 70 Copynumber: 9.7 Consensus size: 69
103322148 TCCCATTGTT
* * * * * * *
103322158 ATCTTAAGGCTCGCAAGTTCAATACCACATCCTCTAAAATAGATAGGAAGAACTAAGGCTCCCAA
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCTAA-GCT-CTAA
*
103322223 -TTATG
64 GCTATG
* * *
103322228 ATCTTAAGGCTCGCAGGTTTAATACCACAGCCTCTAAAATAGTTAGCAAGAGTTCAAGCTCTAAG
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCT-AAGCTCTAAG
*
103322293 CTGTG
65 CTATG
* * * * * * * * **
103322298 ATCTTAGGGCTTGCAGTTTTAATACCGTAGCCCCCAAAAATAGTTAACGAA-AGCTAAAGCTCCC
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAG-CCTCTAAAATAGTTAGC-AAGAGCT-AAGCTCTA
103322362 AGCTAT-
63 AGCTATG
* * * * * * ** * **
103322368 AGTATTAAGGCTTGTAAGTTTAACACCATAGCCTCTAAAATAGTTAGCTAGAGCTAAGCTCCCAG
1 A-TCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCTAAGCTCTAAG
* *
103322433 CTGTA
65 CTATG
** * * * * * * *** * *
103322438 ATCTTGGGGCCCTCAGGTTCAGTATCC-TAGCCCCCAAAAATAGTTAATGAGGGTTAAGGCTCTC
1 ATCTTAAGGCTCGCAGGTTCAATA-CCGCAG-CCTCTAAAATAGTTAGCAAGAGCTAA-GCTCT-
103322502 AA-CTATG
62 AAGCTATG
* * * * * * * * * * *
103322509 ATATTAATGCTAGCAGGTTTAATATCGCAACCCCGAAAAATAGTTAACAAGAGCTAAGGCTTTTA
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTC-TAAAATAGTTAGCAAGAGCTAA-GCTCTAA
* *
103322574 GTTTTG
64 GCTATG
* * * * * * *
103322580 ATCTTAAGGCTCGCAGGTTCAATACTGTATCCTCTAAAACAGTTAGCGAGAGTTAAGGCTCCCAA
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCTAA-GCT-CTAA
103322645 -CTATG
64 GCTATG
* * * *
103322650 ATCTTAAGGCTCGTAGGTTCAATACCGTAGCCTCTAAAATAGTTAGCGAGAGCTCAAGCTCTCAG
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCT-AAGCTCTAAG
*
103322715 CTGTG
65 CTATG
* * * * ** * *
103322720 ATCTTAAGGTTTGTAGGATCAATGTCGCAGCCTCTAAAACT-GTTAGCGAGAGCTCAAGCTCTTA
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAA-TAGTTAGCAAGAGCT-AAGCTCTAA
*
103322784 -CTTGTG
64 GC-TATG
** * * *
103322790 ATCTTAAGGCTCATAGGTTCAACACCACAGCCTCTAAAACAGTTA
1 ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTA
103322835 TTGTAAGCTG
Statistics
Matches: 467, Mismatches: 120, Indels: 40
0.74 0.19 0.06
Matches are distributed among these distances:
69 35 0.07
70 299 0.64
71 130 0.28
72 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (69 bp):
ATCTTAAGGCTCGCAGGTTCAATACCGCAGCCTCTAAAATAGTTAGCAAGAGCTAAGCTCTAAGC
TATG
Done.