Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 343 of 378
Found at i:103603744 original size:29 final size:29
Alignment explanation
Indices: 103603711--103603842 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
103603701 GTGACGAGAT
103603711 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103603740 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
103603769 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
103603798 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
103603827 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
103603843 AAATCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
28 2 0.02
29 88 0.98
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:103611204 original size:29 final size:28
Alignment explanation
Indices: 103611171--103611300 Score: 138
Period size: 29 Copynumber: 4.6 Consensus size: 28
103611161 GTGACGAGAT
103611171 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCG-GCTGGAAATATA
103611200 TGGCACTAAGTGTGC-GCTGGAAATATA
1 TGGCACTAAGTGTGCGGCTGGAAATATA
* ***
103611227 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCG-GCTGGAAATATA
* * **
103611256 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGC-GGCTGGAAAT-ATA
103611285 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
103611301 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
27 27 0.31
28 3 0.03
29 56 0.64
30 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGGCTGGAAATATA
Found at i:103611226 original size:27 final size:27
Alignment explanation
Indices: 103611171--103611242 Score: 126
Period size: 27 Copynumber: 2.6 Consensus size: 27
103611161 GTGACGAGAT
103611171 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGC--GCTGGAAATATA
103611200 TGGCACTAAGTGTGCGCTGGAAATATA
1 TGGCACTAAGTGTGCGCTGGAAATATA
103611227 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
103611243 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
27 28 0.65
29 15 0.35
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGCTGGAAATATA
Found at i:103612936 original size:33 final size:33
Alignment explanation
Indices: 103612863--103612937 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
103612853 GTACCTCTCC
* * *
103612863 TACATCACCTTCCTCACCAGATTCTACCTTTTC
1 TACATCACCTTCATCACCAGATTCTACCCTTTA
* *
103612896 TAGATCACCTTCATCATCAGATTCTACCCCTTTA
1 TACATCACCTTCATCACCAGATTCTA-CCCTTTA
103612930 T-CATCACC
1 TACATCACC
103612938 CTCCCCATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 29 0.83
34 6 0.17
ACGTcount: A:0.24, C:0.37, G:0.04, T:0.35
Consensus pattern (33 bp):
TACATCACCTTCATCACCAGATTCTACCCTTTA
Found at i:103614998 original size:15 final size:15
Alignment explanation
Indices: 103614978--103615009 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
103614968 CATTTCACTA
*
103614978 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
103614993 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
103615008 TT
1 TT
103615010 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:103616945 original size:113 final size:108
Alignment explanation
Indices: 103616746--103617045 Score: 323
Period size: 113 Copynumber: 2.7 Consensus size: 108
103616736 ATAGATGGAG
* * *
103616746 TTTTAGCGGCGTTTTTCAAAAAACGCCGCAATAGGTCGACCTTTAGCTGCGTTTTTTGAAAAACG
1 TTTTAGCGGCGTTTTTC-AAAAACGCCGCAATAGATC-AACTTTAGCGGCGTTTTTTGAAAAACG
* ** *
103616811 CTGCTAAAAGGTTAATCAAAACGACGTCGTTTTAC-ATGAGCTTAACA
64 CCGCTAAAAGGTTAAGAAAAACGACGTCATTTT-CTATGAGCTT--CA
* * *
103616858 TTTTAGTGGCAGTTTTACAAAAACGCCGCCATAGATCAAACTTTAGCGGCGTTTTTTAGAAAAAC
1 TTTTAGCGGC-GTTTTTCAAAAACGCCGCAATAGATC-AACTTTAGCGGCGTTTTTT-GAAAAAC
* * *
103616923 GCCACTAAAATGTTAAGAAAAACGACGTTATTTTCTATGAGCTTCA
63 GCCGCTAAAAGGTTAAGAAAAACGACGTCATTTTCTATGAGCTTCA
* * *
103616969 TTGGCACTAGCGGCGTTTTCTCGAAAACGCCGCAATAGATCAACTTTAGCGGCATTTTTTTGAAA
1 TT----TTAGCGGCGTTTT-TCAAAAACGCCGCAATAGATCAACTTTAGCGGC-GTTTTTTGAAA
103617034 AACGCCGCTAAA
60 AACGCCGCTAAA
103617046 GGAAACCTAT
Statistics
Matches: 158, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
111 4 0.03
112 44 0.28
113 48 0.30
114 32 0.20
115 30 0.19
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (108 bp):
TTTTAGCGGCGTTTTTCAAAAACGCCGCAATAGATCAACTTTAGCGGCGTTTTTTGAAAAACGCC
GCTAAAAGGTTAAGAAAAACGACGTCATTTTCTATGAGCTTCA
Found at i:103617138 original size:153 final size:153
Alignment explanation
Indices: 103616901--103617197 Score: 402
Period size: 153 Copynumber: 1.9 Consensus size: 153
103616891 GATCAAACTT
* * * *
103616901 TAGCGGCGTTTTTTAGAAAAACGCCACTAAAATGTTAAGAAAAACGACGTTATTTTCTATGAGCT
1 TAGCGGCGTTTTTCAAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCT
* * * *
103616966 TCATTGGCACTAGCGGCGTTTTCTCGAAAACGCCGCAATAGATC-AACTTTAGCGGCATTTTTTT
66 CCATTGGCACTAGCGGCGTTTT-TCAAAAACGCCGCAAAAGATCAAACTTTAGCGG--TGTTTTT
103617030 G-AAAAACGCCGCTAAAGGAAACCTA
128 GAAAAAACGCCGCTAAAGGAAACCTA
* * * * *
103617055 TAGCGGCG-TTTTCAAAAAAACGTCGCTAAAATGTTAAGGAAAACGACGTCGTTTTATATGTGCT
1 TAGCGGCGTTTTTCAAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCT
* * *
103617119 CCTTTGGCAGTAGTGGCGTTTTTCAAAAACGCCGCAAAAGATCAAACTTTAGCGGTGTTTTTGAA
66 CCATTGGCACTAGCGGCGTTTTTCAAAAACGCCGCAAAAGATCAAACTTTAGCGGTGTTTTTGAA
103617184 AAAACGCCGCTAAA
131 AAAACGCCGCTAAA
103617198 ATGTTATATA
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
151 7 0.06
152 34 0.27
153 76 0.61
154 8 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (153 bp):
TAGCGGCGTTTTTCAAAAAAACGCCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCT
CCATTGGCACTAGCGGCGTTTTTCAAAAACGCCGCAAAAGATCAAACTTTAGCGGTGTTTTTGAA
AAAACGCCGCTAAAGGAAACCTA
Found at i:103617698 original size:15 final size:14
Alignment explanation
Indices: 103617680--103617722 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
103617670 CTTAATATTT
103617680 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
103617695 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
103617710 TTATGATTTAGGG
1 TTATGGTTTAGGG
103617723 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:103617729 original size:14 final size:13
Alignment explanation
Indices: 103617687--103617748 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 13
103617677 TTTTTATAGG
*
103617687 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
103617702 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
103617716 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
**
103617730 TTTATGTTTTATGA
1 TTTA-GGGTTATGA
103617744 TTTAG
1 TTTAG
103617749 AGTTTGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.17
14 20 0.49
15 13 0.32
16 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:103617768 original size:28 final size:28
Alignment explanation
Indices: 103617710--103617768 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
103617700 GGTTTAAGGG
**
103617710 TTATGATTTAGGGTTGATGATTTATGTT
1 TTATGATTTAGGGTTGATGATTTATAAT
* *
103617738 TTATGATTTAGAGTTTGA-GGTTTATAAT
1 TTATGATTTAG-GGTTGATGATTTATAAT
103617766 TTA
1 TTA
103617769 GAAGGTTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGATGATTTATAAT
Found at i:103618178 original size:14 final size:14
Alignment explanation
Indices: 103618145--103618189 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
103618135 CTAGTATTCG
103618145 GGGTTTA-GGTTT-
1 GGGTTTATGGTTTA
103618157 GGGTTTTATGGTTTA
1 GGG-TTTATGGTTTA
*
103618172 GGGTTTATGGTATA
1 GGGTTTATGGTTTA
103618186 GGGT
1 GGGT
103618190 CAGAGTCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 3 0.10
13 4 0.14
14 19 0.66
15 3 0.10
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (14 bp):
GGGTTTATGGTTTA
Found at i:103618301 original size:7 final size:7
Alignment explanation
Indices: 103618286--103618359 Score: 94
Period size: 7 Copynumber: 10.6 Consensus size: 7
103618276 TTTTTAGTGT
103618286 TTTAGGG
1 TTTAGGG
*
103618293 TTCAGGG
1 TTTAGGG
103618300 TTTAGGG
1 TTTAGGG
103618307 TTTAGGG
1 TTTAGGG
** *
103618314 CCTAAGG
1 TTTAGGG
*
103618321 CTTAGGG
1 TTTAGGG
103618328 TTTAGGG
1 TTTAGGG
*
103618335 TTTAGGA
1 TTTAGGG
103618342 TTTAGGG
1 TTTAGGG
103618349 TTTAGGG
1 TTTAGGG
103618356 TTTA
1 TTTA
103618360 ATTTTGGAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 57 1.00
ACGTcount: A:0.18, C:0.05, G:0.38, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:103622572 original size:9 final size:9
Alignment explanation
Indices: 103622549--103622675 Score: 94
Period size: 9 Copynumber: 13.6 Consensus size: 9
103622539 ATTGATCATT
*
103622549 ACTTAAATA
1 ACTTACATA
*
103622558 AATTACATA
1 ACTTACATA
103622567 ACTTACATA
1 ACTTACATA
* *
103622576 ACTCATATA
1 ACTTACATA
103622585 AC-TACATA
1 ACTTACATA
*
103622593 ATTTACATAACA
1 ACTTACAT---A
103622605 ACTTACATA
1 ACTTACATA
* *
103622614 ACTCACATT
1 ACTTACATA
*
103622623 ACTTAAATA
1 ACTTACATA
*
103622632 AATTACATA
1 ACTTACATA
*
103622641 ACTCACATA
1 ACTTACATA
*
103622650 ACGTACATAACA
1 ACTTACAT---A
103622662 ACTTACATA
1 ACTTACATA
103622671 ACTTA
1 ACTTA
103622676 ACTAATACAT
Statistics
Matches: 90, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
8 5 0.06
9 69 0.77
12 16 0.18
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:103622612 original size:38 final size:39
Alignment explanation
Indices: 103622549--103622642 Score: 124
Period size: 38 Copynumber: 2.5 Consensus size: 39
103622539 ATTGATCATT
*
103622549 ACTTAAATAAATTACAT---AACTTACATAACTCATATA
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
* * *
103622585 AC-TACATAATTTACATAACAACTTACATAACTCACATT
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
103622623 ACTTAAATAAATTACATAAC
1 ACTTAAATAAATTACATAAC
103622643 TCACATAACG
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
35 12 0.25
36 2 0.04
38 19 0.40
39 15 0.31
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (39 bp):
ACTTAAATAAATTACATAACAACTTACATAACTCACATA
Found at i:103628235 original size:21 final size:21
Alignment explanation
Indices: 103628209--103628252 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
103628199 TCAACTTAGA
*
103628209 GCGGAGGCAGCAGCGCGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
103628230 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
103628251 GC
1 GC
103628253 AGAGCAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.23, G:0.57, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:103628623 original size:42 final size:42
Alignment explanation
Indices: 103628549--103628795 Score: 332
Period size: 42 Copynumber: 5.7 Consensus size: 42
103628539 ACTGGGCAAA
103628549 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTT-TAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
103628592 TTAGCGGCGTTTTTTTTAAAGCGCCGTTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTGGTCT
* ** *
103628634 TTAGTGGCGCTTTTTTCATAAAAATGCCGCTAAAATTCCTGGTCT
1 TTAGCGGCG-TTTTTT--TAAAAGCGCCGCTAAAAGTCCTGGTCT
103628679 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTGGTCT
* * *
103628721 TTAACGGTGTTTTTTTAAAAGCGCCGCTAAAAGTCCTAGTCT
1 TTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
103628763 TTAGCAGCGCTTTTTTCATAAAAACGCCGCTAA
1 TTAGCGGCG-TTTTTT--TAAAAGCGCCGCTAA
103628796 TTTTACCGGT
Statistics
Matches: 179, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
42 102 0.57
43 27 0.15
44 6 0.03
45 44 0.25
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTGGTCT
Found at i:103628703 original size:87 final size:85
Alignment explanation
Indices: 103628549--103628795 Score: 343
Period size: 87 Copynumber: 2.9 Consensus size: 85
103628539 ACTGGGCAAA
*
103628549 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTTAAAGC
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAGC
*
103628614 GCCGTTAAAAGTCCTGGTCT
66 GCCGCTAAAAGTCCTGGTCT
* ** *
103628634 TTAGTGGCGCTTTTTTCATAAAAATGCCGCTAAAATTCCTGGTCTTTAGCGGCGTTTTTTTAAAA
1 TTAGCGGCG-TTTTTT-ATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAAAA
103628699 GCGCCGCTAAAAGTCCTGGTCT
64 GCGCCGCTAAAAGTCCTGGTCT
* * * *
103628721 TTAACGGTGTTTTTT-TAAAAGCGCCGCTAAAAGTCCTAGTCTTTAGCAGCGCTTTTTTCATAAA
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCG-TTTTTT--TAAA
*
103628785 AACGCCGCTAA
63 AGCGCCGCTAA
103628796 TTTTACCGGT
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
84 31 0.22
85 14 0.10
86 12 0.08
87 85 0.60
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (85 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAGC
GCCGCTAAAAGTCCTGGTCT
Found at i:103628705 original size:129 final size:130
Alignment explanation
Indices: 103628549--103628795 Score: 415
Period size: 129 Copynumber: 1.9 Consensus size: 130
103628539 ACTGGGCAAA
* *
103628549 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTTAAAGC
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAACGGCGTTTTTTTAAAAGC
* * ** *
103628614 GCCGTTAAAAGTCCTGGTCTTTAGTGGCGCTTTTTTCATAAAAATGCCGCTAAAATTCCTGGTCT
66 GCCGCTAAAAGTCCTAGTCTTTAGCAGCGCTTTTTTCATAAAAACGCCGCTAAAATTCCTGGTCT
*
103628679 TTAGCGGCGTTTTTT-TAAAAGCGCCGCTAAAAGTCCTGGTCTTTAACGGTGTTTTTTTAAAAGC
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAACGGCGTTTTTTTAAAAGC
103628743 GCCGCTAAAAGTCCTAGTCTTTAGCAGCGCTTTTTTCATAAAAACGCCGCTAA
66 GCCGCTAAAAGTCCTAGTCTTTAGCAGCGCTTTTTTCATAAAAACGCCGCTAA
103628796 TTTTACCGGT
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
129 94 0.86
130 15 0.14
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (130 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAACGGCGTTTTTTTAAAAGC
GCCGCTAAAAGTCCTAGTCTTTAGCAGCGCTTTTTTCATAAAAACGCCGCTAAAATTCCTGGTCT
Found at i:103629906 original size:43 final size:43
Alignment explanation
Indices: 103629845--103629931 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
103629835 ATAGTTTCCT
103629845 TTGGTTTTGATCATGTCTCCACTAGAACCATCGAATAATACAA
1 TTGGTTTTGATCATGTCTCCACTAGAACCATCGAATAATACAA
103629888 TTGGTTTTGATCATGTCTCCACTAGAACCATCGAATAATACAA
1 TTGGTTTTGATCATGTCTCCACTAGAACCATCGAATAATACAA
103629931 T
1 T
103629932 CAACCTTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (43 bp):
TTGGTTTTGATCATGTCTCCACTAGAACCATCGAATAATACAA
Found at i:103635737 original size:26 final size:26
Alignment explanation
Indices: 103635701--103635755 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
103635691 TCTTTATACT
103635701 TTTAGAATTTACTCTTTATTTTTCAA
1 TTTAGAATTTACTCTTTATTTTTCAA
*
103635727 TTTAGAATTTACTCTTTATTTTTTAA
1 TTTAGAATTTACTCTTTATTTTTCAA
103635753 TTT
1 TTT
103635756 TCAAAATTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTAGAATTTACTCTTTATTTTTCAA
Found at i:103644545 original size:16 final size:17
Alignment explanation
Indices: 103644516--103644555 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
103644506 TTTAAAATTT
*
103644516 ATAAAAATATTAAAAAA
1 ATAAAAATACTAAAAAA
*
103644533 ATAAAAAT-CTAAAGAA
1 ATAAAAATACTAAAAAA
103644549 ATAAAAA
1 ATAAAAA
103644556 GTTCATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (17 bp):
ATAAAAATACTAAAAAA
Found at i:103645058 original size:5 final size:5
Alignment explanation
Indices: 103645048--103645075 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
103645038 ATTGTGATTC
103645048 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
103645076 AACGATGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:103647369 original size:48 final size:48
Alignment explanation
Indices: 103647317--103647410 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
103647307 TCTGCAATGC
103647317 AGAAGTAGCCTCTGAGAAAGGAACGCGCAAGGAATTTTCAGTGGTAAG
1 AGAAGTAGCCTCTGAGAAAGGAACGCGCAAGGAATTTTCAGTGGTAAG
103647365 AGAAGTAGCCTCTGAGAAAGGAACGCGCAAGGAATTTTCAGTGGTA
1 AGAAGTAGCCTCTGAGAAAGGAACGCGCAAGGAATTTTCAGTGGTA
103647411 CGATAGTGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (48 bp):
AGAAGTAGCCTCTGAGAAAGGAACGCGCAAGGAATTTTCAGTGGTAAG
Found at i:103649155 original size:6 final size:7
Alignment explanation
Indices: 103649139--103649163 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
103649129 CAAAATTGAT
103649139 AAAAAGA
1 AAAAAGA
103649146 AAAAAGA
1 AAAAAGA
103649153 AAAAAGA
1 AAAAAGA
103649160 AAAA
1 AAAA
103649164 TCAATTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:103653856 original size:19 final size:18
Alignment explanation
Indices: 103653815--103653857 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
103653805 TTTAGATATA
*
103653815 AAATAATAAAATATGTAT
1 AAATAATAAAATATGGAT
* *
103653833 TAATAATTATAATATGGAT
1 AAATAA-TAAAATATGGAT
103653852 AAATAA
1 AAATAA
103653858 GATAAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (18 bp):
AAATAATAAAATATGGAT
Found at i:103657726 original size:21 final size:20
Alignment explanation
Indices: 103657708--103657833 Score: 76
Period size: 20 Copynumber: 6.2 Consensus size: 20
103657698 TGCTTTCCGT
*
103657708 TTAGCTCTTATGAGCTTCCG
1 TTAGCTCTTATGAGCTTCAG
* * *
103657728 TTAACTCATATGAGTTTCAG
1 TTAGCTCTTATGAGCTTCAG
* * * * *
103657748 TTAACCCTTTTGGGGTTTCAG
1 TTAGCTCTTAT-GAGCTTCAG
* *
103657769 TTCAGCTCTGATAAGCTTCAG
1 TT-AGCTCTTATGAGCTTCAG
* *
103657790 TTAGC-CTT-TGGGCTTCCG
1 TTAGCTCTTATGAGCTTCAG
* *
103657808 TTTAGCACTTATGTGCTTCAG
1 -TTAGCTCTTATGAGCTTCAG
103657829 TTAGC
1 TTAGC
103657834 CTTCGGGCTT
Statistics
Matches: 80, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
18 7 0.09
19 7 0.09
20 35 0.44
21 26 0.32
22 5 0.06
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (20 bp):
TTAGCTCTTATGAGCTTCAG
Found at i:103657741 original size:20 final size:20
Alignment explanation
Indices: 103657702--103657752 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
103657692 CGTGTTTGCT
* *
103657702 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
103657723 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
103657743 TTCAGTTAAC
1 TTCCGTTAAC
103657753 CCTTTTGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:103657829 original size:39 final size:39
Alignment explanation
Indices: 103657783--103657922 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
103657773 GCTCTGATAA
*
103657783 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
103657822 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* * *
103657861 GCTTCAGCTAGACTTCGGGCTTCAGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
** *
103657900 GCTTCAACTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
103657923 AGATCACGAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:103657884 original size:18 final size:18
Alignment explanation
Indices: 103657861--103657924 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
103657851 GCACTTATGT
103657861 GCTTCAGCTAGACTTCGG
1 GCTTCAGCTAGACTTCGG
* * *
103657879 GCTTCAGTTTAGCACTTATGT
1 GCTTCAG-CTAG-ACTT-CGG
*
103657900 GCTTCAACTAGACTTCGG
1 GCTTCAGCTAGACTTCGG
103657918 GCTTCAG
1 GCTTCAG
103657925 ATCACGATGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
18 14 0.40
19 7 0.20
20 7 0.20
21 7 0.20
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (18 bp):
GCTTCAGCTAGACTTCGG
Found at i:103658826 original size:16 final size:16
Alignment explanation
Indices: 103658807--103658839 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
103658797 GAATAATCTA
*
103658807 TGTTTCTTTTCTTCTT
1 TGTTTCTTTTATTCTT
103658823 TGTTTCTTTTATTCTT
1 TGTTTCTTTTATTCTT
103658839 T
1 T
103658840 TACTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTTATTCTT
Found at i:103658882 original size:3 final size:3
Alignment explanation
Indices: 103658865--103658929 Score: 80
Period size: 3 Copynumber: 21.7 Consensus size: 3
103658855 ATGTATTAGT
103658865 TAA TAA -AA TTAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
103658910 T-A TAA CAA TATT TAA TAA TA
1 TAA TAA TAA TA-A TAA TAA TA
103658930 TTATTATAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 4 0.07
3 46 0.85
4 4 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:103660206 original size:26 final size:25
Alignment explanation
Indices: 103660165--103660213 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
103660155 TCTCATTCCT
103660165 ATTTTACCCTAGTAAAAATTTGACG
1 ATTTTACCCTAGTAAAAATTTGACG
* *
103660190 ATTTTACGCTTAGTAAAATTTTGA
1 ATTTTAC-CCTAGTAAAAATTTGA
103660214 GAAAATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (25 bp):
ATTTTACCCTAGTAAAAATTTGACG
Found at i:103660484 original size:10 final size:10
Alignment explanation
Indices: 103660458--103660487 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
103660448 CTATTTCTCT
103660458 ATTTCTATTC
1 ATTTCTATTC
103660468 A-TTCTATTC
1 ATTTCTATTC
103660477 ATTTCTATTC
1 ATTTCTATTC
103660487 A
1 A
103660488 AACTCACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTCTATTC
Found at i:103663136 original size:29 final size:30
Alignment explanation
Indices: 103663089--103663156 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
103663079 TGGCCCAAGA
* * *
103663089 GTAAATACTCAAAATTTAAGGGATTAA-AGT
1 GTAAATA-TCAAAAGTTAAAGGACTAATAGT
*
103663119 GTAAATATGAAAAGTTAAAGGACTAATAGT
1 GTAAATATCAAAAGTTAAAGGACTAATAGT
*
103663149 GCAAATAT
1 GTAAATAT
103663157 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTAAAGGACTAATAGT
Found at i:103663454 original size:2 final size:2
Alignment explanation
Indices: 103663449--103663486 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
103663439 GTGTGGGAAA
103663449 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
103663487 TATCCATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:103664748 original size:24 final size:25
Alignment explanation
Indices: 103664721--103664769 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
103664711 TTTTTTTTAT
*
103664721 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
103664745 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
103664770 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:103664762 original size:25 final size:23
Alignment explanation
Indices: 103664733--103664797 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
103664723 AATAAAAAAC
*
103664733 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
103664758 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
103664779 -TTAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
103664798 AAAAATAAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 11 0.29
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:103664792 original size:19 final size:20
Alignment explanation
Indices: 103664759--103664797 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
103664749 TCAAATACAT
103664759 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
103664779 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
103664798 AAAAATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:103665034 original size:17 final size:18
Alignment explanation
Indices: 103664991--103665036 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
103664981 CTAAAGTTAC
*
103664991 TTAAAATTAAAAATAAAT
1 TTAATATTAAAAATAAAT
* *
103665009 TT-TTTTTAAAAAT-AAT
1 TTAATATTAAAAATAAAT
103665025 TTAATATTAAAA
1 TTAATATTAAAA
103665037 TCGGGCAGGG
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
16 5 0.23
17 15 0.68
18 2 0.09
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAATATTAAAAATAAAT
Found at i:103665700 original size:21 final size:21
Alignment explanation
Indices: 103665661--103665700 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
103665651 GTAATTTTGT
* * *
103665661 TTAGAACATTAATTGAATGTA
1 TTAGAACATGAAATAAATGTA
103665682 TTAGAACATGAAATAAATG
1 TTAGAACATGAAATAAATG
103665701 AAAACGACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (21 bp):
TTAGAACATGAAATAAATGTA
Found at i:103667426 original size:4 final size:4
Alignment explanation
Indices: 103667417--103667469 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
103667407 ACTATGTGCT
103667417 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
103667465 TGTA T
1 TGTA T
103667470 ATTTATGTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:103669508 original size:27 final size:26
Alignment explanation
Indices: 103669434--103669527 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 26
103669424 TATGTCATTC
* * * *
103669434 TTTAATTTGCTTTGTGTATTATTGAT
1 TTTAAATTGTTTTATGTATTATTCAT
* * ** *
103669460 TTTAAAATGCTTTATACATTATTTAT
1 TTTAAATTGTTTTATGTATTATTCAT
103669486 TTTAAACTTGTTTTATGTATTATTCAT
1 TTTAAA-TTGTTTTATGTATTATTCAT
103669513 TTTAAATTGTTTTAT
1 TTTAAATTGTTTTAT
103669528 TGTTTACTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 35 0.62
27 21 0.38
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTAAATTGTTTTATGTATTATTCAT
Found at i:103675652 original size:83 final size:83
Alignment explanation
Indices: 103675564--103675726 Score: 283
Period size: 83 Copynumber: 2.0 Consensus size: 83
103675554 TAGTAAAGGT
103675564 AAAATTACACTTT-AGCCTCTAAAAATTATAAAGATATAGACTATAAAAAATTAAAATTTCGTTC
1 AAAATTACA-TTTAAGCCTCTAAAAATTATAAAGATATAGACTATAAAAAATTAAAATTTCGTTC
103675628 GACCCCCTAAAAAATTATA
65 GACCCCCTAAAAAATTATA
** *
103675647 AAAATTTGATTTAATCCTCTAAAAATTATAAAGATATAGACTATAAAAAATTAAAATTTCGTTCG
1 AAAATTACATTTAAGCCTCTAAAAATTATAAAGATATAGACTATAAAAAATTAAAATTTCGTTCG
103675712 ACCCCCTAAAAAATT
66 ACCCCCTAAAAAATT
103675727 GTTTTGGCTT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
82 3 0.04
83 73 0.96
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (83 bp):
AAAATTACATTTAAGCCTCTAAAAATTATAAAGATATAGACTATAAAAAATTAAAATTTCGTTCG
ACCCCCTAAAAAATTATA
Found at i:103677788 original size:21 final size:21
Alignment explanation
Indices: 103677764--103677807 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
103677754 TTAAACACTA
*
103677764 AGAGTCCTATCCTAATCACAT
1 AGAGTCCTATCCCAATCACAT
* *
103677785 AGAGTCTTATCCCATTCACAT
1 AGAGTCCTATCCCAATCACAT
103677806 AG
1 AG
103677808 CTCATTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (21 bp):
AGAGTCCTATCCCAATCACAT
Found at i:103685439 original size:15 final size:15
Alignment explanation
Indices: 103685419--103685449 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
103685409 TTGAGTTAAT
103685419 TATTCAATTTAGTGC
1 TATTCAATTTAGTGC
103685434 TATTCAATTTAGTGC
1 TATTCAATTTAGTGC
103685449 T
1 T
103685450 TAAAATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (15 bp):
TATTCAATTTAGTGC
Found at i:103686396 original size:53 final size:53
Alignment explanation
Indices: 103686316--103686424 Score: 193
Period size: 53 Copynumber: 2.1 Consensus size: 53
103686306 AGAGAATAAC
*
103686316 AACCCTTAACAGCCTGGCAATGGTTACTTAAAACGGTGCGTTTTGTGCGAAA-A
1 AACCCTTAACAGCCTGGCAACGGTTACTTAAAACGGTGCGTTTTGTGC-AAACA
103686369 AACCCTTAACAGCCTGGCAACGGTTACTTAAAACGGTGCGTTTTGTGCAAACA
1 AACCCTTAACAGCCTGGCAACGGTTACTTAAAACGGTGCGTTTTGTGCAAACA
103686422 AAC
1 AAC
103686425 TAAGCCAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
52 3 0.06
53 51 0.94
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (53 bp):
AACCCTTAACAGCCTGGCAACGGTTACTTAAAACGGTGCGTTTTGTGCAAACA
Found at i:103687815 original size:11 final size:11
Alignment explanation
Indices: 103687782--103687815 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
103687772 GAACAAAAGT
103687782 AGCAAAAC-AA
1 AGCAAAACAAA
103687792 AGCTAAAACAAA
1 AGC-AAAACAAA
103687804 AGCAAAACAAA
1 AGCAAAACAAA
103687815 A
1 A
103687816 ATAACTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 14 0.64
12 5 0.23
ACGTcount: A:0.71, C:0.18, G:0.09, T:0.03
Consensus pattern (11 bp):
AGCAAAACAAA
Found at i:103691865 original size:35 final size:35
Alignment explanation
Indices: 103691839--103692103 Score: 336
Period size: 35 Copynumber: 7.6 Consensus size: 35
103691829 CATGGCAAAG
*
103691839 TGTGAAACATAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
103691874 TGTGAAATGTAGGTATGGTATTAACCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
103691909 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
103691944 TGTGAAACGTAAGTATGGTATTAACCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
103691979 TGTGAAACGTAGGTATAGAATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
103692014 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
** * ** * *
103692049 TAAG-AACATAGGTATGACAT-TTACCATACCAAGT
1 TGTGAAACGTAGGTATGGTATCAT-CCATACCGAGT
*
103692083 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
103692104 TTCAATAAGG
Statistics
Matches: 195, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
33 1 0.01
34 24 0.12
35 170 0.87
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
Found at i:103691960 original size:70 final size:70
Alignment explanation
Indices: 103691839--103692104 Score: 374
Period size: 70 Copynumber: 3.8 Consensus size: 70
103691829 CATGGCAAAG
*
103691839 TGTGAAACATAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACATAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
103691904 CGAGT
66 CGAGT
* *
103691909 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAAGTATGGTATTAACCATAC
1 TGTGAAACATAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
103691974 CGAGT
66 CGAGT
* * * *
103691979 TGTGAAACGTAGGTATAGAATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTATCCATAC
1 TGTGAAACATAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
*
103692044 TGAGT
66 CGAGT
** ** * * *
103692049 TAAG-AACATAGGTATGACAT-TTACCATACCAAGTTGTGAAATGTAGGTATGGTATT
1 TGTGAAACATAGGTATGGTATCAT-CCATACCGAGTTGTGAAACGTAGGTATGGTATT
103692105 TCAATAAGGA
Statistics
Matches: 178, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
68 1 0.01
69 43 0.24
70 134 0.75
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (70 bp):
TGTGAAACATAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
CGAGT
Found at i:103693720 original size:10 final size:9
Alignment explanation
Indices: 103693694--103693724 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
103693684 TTGTGTGTTC
103693694 TTTATTTTA
1 TTTATTTTA
103693703 TTTATTTTA
1 TTTATTTTA
103693712 TTCTATTTTA
1 TT-TATTTTA
103693722 TTT
1 TTT
103693725 TTCTCAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:103698172 original size:10 final size:9
Alignment explanation
Indices: 103698146--103698176 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
103698136 TTGTGTGTTC
103698146 TTTATTTTA
1 TTTATTTTA
103698155 TTTATTTTA
1 TTTATTTTA
103698164 TTCTATTTTA
1 TT-TATTTTA
103698174 TTT
1 TTT
103698177 TTCACATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:103699424 original size:21 final size:21
Alignment explanation
Indices: 103699366--103699426 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
103699356 AGGCACTTTA
103699366 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGT-TTT-AGGCACCTCG
* * * *
103699389 TGTGCCATATCAGGCACCTCG
1 TGTGTCGTTTTAGGCACCTCG
103699410 TGTGTCGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
103699427 TTTATGTGTC
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 23 0.77
22 1 0.03
23 6 0.20
ACGTcount: A:0.15, C:0.26, G:0.26, T:0.33
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:103699434 original size:21 final size:21
Alignment explanation
Indices: 103699356--103699438 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
103699346 TTTACCGATC
* *
103699356 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGT-TTT
* * * * *
103699378 CAGGCACCTCGTGTGCCATATC
1 -AGGCACCTCATGTGTCGTTTT
*
103699400 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
103699421 AGGCACTTTATGTGTCGT
1 AGGCACCTCATGTGTCGT
103699439 GTACTGATCA
Statistics
Matches: 46, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
21 32 0.70
22 1 0.02
23 13 0.28
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:103702747 original size:12 final size:11
Alignment explanation
Indices: 103702712--103702745 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
103702702 AAACAAATGC
103702712 AGCAAAAC-AA
1 AGCAAAACAAA
103702722 AGCTAAAACAAA
1 AGC-AAAACAAA
103702734 AGCAAAACAAA
1 AGCAAAACAAA
103702745 A
1 A
103702746 AGAACTGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 14 0.64
12 5 0.23
ACGTcount: A:0.71, C:0.18, G:0.09, T:0.03
Consensus pattern (11 bp):
AGCAAAACAAA
Found at i:103706203 original size:40 final size:40
Alignment explanation
Indices: 103706159--103706247 Score: 97
Period size: 41 Copynumber: 2.2 Consensus size: 40
103706149 GAACAATAGT
* * *
103706159 GGCGTTTTACCAAAAACGCCGCTAAAAACGGAGCAATACC
1 GGCGTTTTACCAAAAACGCCACTAAAAACAGAGAAATACC
**** *
103706199 GGCGTTTTTTGTTAAAACGCCACTAAAAACAGAGAAATAGC
1 GGCG-TTTTACCAAAAACGCCACTAAAAACAGAGAAATACC
103706240 GGCGTTTT
1 GGCGTTTT
103706248 TGGCAAAACG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (40 bp):
GGCGTTTTACCAAAAACGCCACTAAAAACAGAGAAATACC
Found at i:103706351 original size:41 final size:40
Alignment explanation
Indices: 103706171--103706348 Score: 194
Period size: 41 Copynumber: 4.4 Consensus size: 40
103706161 CGTTTTACCA
* * * *
103706171 AAAACGCCGCTAAAAACGGAGCAATACCGGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACAGAGCAATAGCGGCG-CTTTTGGT
* * * *
103706212 AAAACGCCACTAAAAACAGAGAAATAGCGGCGTTTTTGGC
1 AAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGGT
* * *
103706252 AAAACGCCGTTAAAAAACAAAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCT-AAAAACAGAGCAATAGCGGCGCTTTTGGT
* * * *
103706293 AAAACGCTGCTAAAAGCCGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAA-ACAGAGCAATAGCGGCGCTTTTGGT
103706334 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
103706349 GCCATATAAC
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 19 0.16
41 97 0.84
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGGT
Found at i:103706714 original size:21 final size:20
Alignment explanation
Indices: 103706677--103706719 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
103706667 ATTATAGTTT
103706677 AGGGTTTACGTTATATGGTTA
1 AGGGTTTACGTT-TATGGTTA
*
103706698 AGGGTTTAATGTTTATGAGTTA
1 AGGGTTT-ACGTTTATG-GTTA
103706720 CTATTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (20 bp):
AGGGTTTACGTTTATGGTTA
Found at i:103706779 original size:32 final size:32
Alignment explanation
Indices: 103706724--103706785 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
103706714 GAGTTACTAT
* *
103706724 TTTAAGGTTTAGGGATTATGGTTTAAGTGTGG
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
* * *
103706756 TTTAAGGGTTGGGGTTTAAGGTTTAGGTGT
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGT
103706786 AAGGGGTCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (32 bp):
TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
Found at i:103706805 original size:15 final size:15
Alignment explanation
Indices: 103706785--103706820 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
103706775 GGTTTAGGTG
103706785 TAAGGGGTCAGGGGT
1 TAAGGGGTCAGGGGT
103706800 TAAGGGGTCAGGGGT
1 TAAGGGGTCAGGGGT
103706815 TAAGGG
1 TAAGGG
103706821 TTAAGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.06, G:0.53, T:0.19
Consensus pattern (15 bp):
TAAGGGGTCAGGGGT
Found at i:103706827 original size:15 final size:15
Alignment explanation
Indices: 103706757--103706838 Score: 66
Period size: 15 Copynumber: 5.7 Consensus size: 15
103706747 TAAGTGTGGT
103706757 TTAAGGGTT--GGGG
1 TTAAGGGTTCAGGGG
* *
103706770 TTTAA-GGTTTAGGTG
1 -TTAAGGGTTCAGGGG
*
103706785 -TAAGGGGTCAGGGG
1 TTAAGGGTTCAGGGG
*
103706799 TTAAGGGGTCAGGGG
1 TTAAGGGTTCAGGGG
*
103706814 TTAAGGGTT-AAGGG
1 TTAAGGGTTCAGGGG
*
103706828 TTAAAGGTTCA
1 TTAAGGGTTCA
103706839 TGATTCAGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
13 7 0.12
14 23 0.41
15 26 0.46
ACGTcount: A:0.23, C:0.04, G:0.44, T:0.29
Consensus pattern (15 bp):
TTAAGGGTTCAGGGG
Found at i:103706950 original size:21 final size:22
Alignment explanation
Indices: 103706913--103706955 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
103706903 TAGTTTTTTT
103706913 AGGGTTTACGTTATATG-GTTA
1 AGGGTTTACGTTATATGAGTTA
*
103706934 AGGGTTTAATGTT-TATGAGTTA
1 AGGGTTT-ACGTTATATGAGTTA
103706956 CTATTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGGTTTACGTTATATGAGTTA
Found at i:103707015 original size:32 final size:32
Alignment explanation
Indices: 103706960--103707021 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
103706950 GAGTTACTAT
* *
103706960 TTTAAGGTTTAGGGATTATGGTTTAAGTGTGG
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
* * *
103706992 TTTAAGGGTTGGGGTTTAAGGTTTAGGTGT
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGT
103707022 AAGGGTTCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (32 bp):
TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
Found at i:103707111 original size:236 final size:236
Alignment explanation
Indices: 103706674--103707134 Score: 691
Period size: 236 Copynumber: 2.0 Consensus size: 236
103706664 ATCATTATAG
103706674 TTTAGGGTTTACGTTATATGGTTAAGGGTTTAATGTTTATGAGTTACTATTTTAAGGTTTAGGGA
1 TTTAGGGTTTACGTTATATGGTTAAGGGTTTAATGTTTATGAGTTACTATTTTAAGGTTTAGGGA
103706739 TTATGGTTTAAGTGTGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGGGTCAGGGGTTAAG
66 TTATGGTTTAAGTGTGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGGGTCAGGGGTTAAG
* * * * * * * *
103706804 GGGTCAGGGGTTAAGGGTTAAGGGTTAAAGGTTCATGATTCAGGGTTCATGTTTTAATATTTATG
131 GGGTCAAGGGTTAAAGGTTAAGGATTAAAGGTTCATGATTCAAGATTCATGGTTTAAGATTTAAG
103706869 GTTTAGGGATTAAGAGTTTAGGGTTTAAATTAATTAGTTTT
196 GTTTAGGGATTAAGAGTTTAGGGTTTAAATTAATTAGTTTT
103706910 TTTAGGGTTTACGTTATATGGTTAAGGGTTTAATGTTTATGAGTTACTATTTTAAGGTTTAGGGA
1 TTTAGGGTTTACGTTATATGGTTAAGGGTTTAATGTTTATGAGTTACTATTTTAAGGTTTAGGGA
*
103706975 TTATGGTTTAAGTGTGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGGTTCAGGGG-T---
66 TTATGGTTTAAGTGTGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGGGTCAGGGGTTAAG
* * * * *
103707036 ---T-AAGGGTT-AA-G----GG-TTAAAGGTTCATGATTCAGGGTTCATGTTTTAATATTTATG
131 GGGTCAAGGGTTAAAGGTTAAGGATTAAAGGTTCATGATTCAAGATTCATGGTTTAAGATTTAAG
103707090 GTTTAGGGATTAAGAGTTTAGGGTTTAAATTAATTAGTTTT
196 GTTTAGGGATTAAGAGTTTAGGGTTTAAATTAATTAGTTTT
103707131 TTTA
1 TTTA
103707135 ATTTATATGA
Statistics
Matches: 222, Mismatches: 3, Indels: 15
0.93 0.01 0.06
Matches are distributed among these distances:
221 86 0.39
222 2 0.01
226 1 0.00
227 1 0.00
228 6 0.03
229 1 0.00
235 1 0.00
236 124 0.56
ACGTcount: A:0.24, C:0.03, G:0.31, T:0.42
Consensus pattern (236 bp):
TTTAGGGTTTACGTTATATGGTTAAGGGTTTAATGTTTATGAGTTACTATTTTAAGGTTTAGGGA
TTATGGTTTAAGTGTGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGGGTCAGGGGTTAAG
GGGTCAAGGGTTAAAGGTTAAGGATTAAAGGTTCATGATTCAAGATTCATGGTTTAAGATTTAAG
GTTTAGGGATTAAGAGTTTAGGGTTTAAATTAATTAGTTTT
Found at i:103707635 original size:41 final size:42
Alignment explanation
Indices: 103707585--103707672 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
103707575 AATTAAAATT
**
103707585 AAAATTGAGCAATAGTGGCG-TTTTTAG-GTAAAACGCCGTAA
1 AAAATTGAGCAATAGTGGCGTTTTTTAGTG-AAAACGCCACAA
*
103707626 AAAATTGAGCTATAGTGGCGTTTTTTAGTGAAAACGCCACAA
1 AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCACAA
103707668 AAAAT
1 AAAAT
103707673 CTAAAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 19 0.45
42 22 0.52
43 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (42 bp):
AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCACAA
Found at i:103707670 original size:42 final size:41
Alignment explanation
Indices: 103707585--103707672 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 41
103707575 AATTAAAATT
**
103707585 AAAATTGAGCAATAGTGGCGTTTTTAGGTAAAACGCCGTAA
1 AAAATTGAGCAATAGTGGCGTTTTTAGGTAAAACGCCACAA
*
103707626 AAAATTGAGCTATAGTGGCGTTTTTTA-GTGAAAACGCCACAA
1 AAAATTGAGCAATAGTGGCG-TTTTTAGGT-AAAACGCCACAA
103707668 AAAAT
1 AAAAT
103707673 CTAAAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 21 0.50
42 21 0.50
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (41 bp):
AAAATTGAGCAATAGTGGCGTTTTTAGGTAAAACGCCACAA
Found at i:103712525 original size:21 final size:21
Alignment explanation
Indices: 103712496--103712543 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
103712486 TCAACTTAGA
**
103712496 GCGGAGGCAGTAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
*
103712517 GCGGTGGCAACAGCGAGGGAG
1 GCGGAGGCAACAGCGAGGGAG
*
103712538 GTGGAG
1 GCGGAG
103712544 CAGAACAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.15, G:0.56, T:0.06
Consensus pattern (21 bp):
GCGGAGGCAACAGCGAGGGAG
Found at i:103713023 original size:42 final size:43
Alignment explanation
Indices: 103712840--103713150 Score: 385
Period size: 43 Copynumber: 7.3 Consensus size: 43
103712830 GGGCAAATTC
* *
103712840 GCGGCGTTTTTTAAAAAAGCGCTGC-AAATAGTCCTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAA-AGTCCCGGTCTTTA
* * *
103712883 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCTCGATCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
* *
103712926 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCCGATCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
*
103712969 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
* ** * *
103713012 ACGGCG-TTTTTAAATTAGTGCCGCTAAAAGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
* * *
103713054 GCTGCG-TTTTTATAAAAGCGCCGCGAAAGGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
** * * **
103713096 GTAGCGTTTTTTAAAAATGCGCCGCTAAAAGTCTTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
*
103713139 GCGGCATTTTTT
1 GCGGCGTTTTTT
103713151 TCGAAAAAAC
Statistics
Matches: 234, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
42 71 0.30
43 160 0.68
44 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (43 bp):
GCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCCGGTCTTTA
Found at i:103716712 original size:31 final size:31
Alignment explanation
Indices: 103716674--103716853 Score: 265
Period size: 31 Copynumber: 5.8 Consensus size: 31
103716664 ACAAATGACA
*
103716674 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
103716705 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
103716736 AATGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
103716767 AGTAAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
103716798 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
103716829 AAT-AAATAGTGGTAGCTTCGGCTAC
1 AGTGAAA-AGTGGTAGCTTCGGCTAC
103716854 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
30 5 0.04
31 128 0.95
32 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:103717080 original size:42 final size:42
Alignment explanation
Indices: 103716972--103717069 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
103716962 TATGTGATTC
*
103716972 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
* *
103717014 GTGTAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
103717056 GTGTAAGACCATAG
1 GTGTAAGACCATAG
103717070 TTGAACTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 1 0.02
42 51 0.98
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:103729792 original size:31 final size:28
Alignment explanation
Indices: 103729736--103729802 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 28
103729726 TAGAGTTTCA
*
103729736 CATGTAT-AATTGCACTAAATTAAAGTT
1 CATGTATAAATTGCACTAAATCAAAGTT
103729763 CATGTATACAATTGCACATTAAATCAAAGTT
1 CATGTATA-AATTGCAC--TAAATCAAAGTT
*
103729794 CACGTATAA
1 CATGTATAA
103729803 TTTTGAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 7 0.21
29 8 0.24
30 1 0.03
31 18 0.53
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (28 bp):
CATGTATAAATTGCACTAAATCAAAGTT
Found at i:103736941 original size:19 final size:20
Alignment explanation
Indices: 103736901--103736942 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
103736891 GTCCCATTAT
* *
103736901 TTTTTTTGTTTTAATATTTA
1 TTTTTATGTTTTAATATGTA
103736921 TTTTTATGTTTTAA-ATGTA
1 TTTTTATGTTTTAATATGTA
103736940 TTT
1 TTT
103736943 GATTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (20 bp):
TTTTTATGTTTTAATATGTA
Found at i:103736952 original size:25 final size:23
Alignment explanation
Indices: 103736915--103736960 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
103736905 TTTGTTTTAA
*
103736915 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
103736938 TATTTGATTTATTATATTTTAAA
1 TATTT-ATTT-TTATATTTTAAA
103736961 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:103737030 original size:16 final size:15
Alignment explanation
Indices: 103737002--103737031 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
103736992 AAATTAATAT
103737002 GGCCGGGTCGGGCCG
1 GGCCGGGTCGGGCCG
103737017 GGCCGGGCTCGGGCC
1 GGCCGGG-TCGGGCC
103737032 TACCATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.37, G:0.57, T:0.07
Consensus pattern (15 bp):
GGCCGGGTCGGGCCG
Found at i:103737803 original size:2 final size:2
Alignment explanation
Indices: 103737796--103737825 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
103737786 TCATTTCTAA
103737796 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103737826 GTTTATTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103738887 original size:29 final size:27
Alignment explanation
Indices: 103738797--103738916 Score: 107
Period size: 31 Copynumber: 4.2 Consensus size: 27
103738787 GAACTTGACA
*
103738797 TTTTTTT-CTAATTTCGTACCTAAACT
1 TTTTTTTCCTAATTTGGTACCTAAACT
* * *
103738823 TTTTTTGGCCCAAATTGGTACCTAAACT
1 TTTTTT-TCCTAATTTGGTACCTAAACT
* *
103738851 TCACTTTTTCTTAATTTGGTACCTAAACTTGGT
1 T--TTTTTTCCTAATTTGGTACCTAAAC----T
*
103738884 TTTTTTTCCTAATTTGGTACTTAAACT
1 TTTTTTTCCTAATTTGGTACCTAAACT
103738911 TTTTTT
1 TTTTTT
103738917 AGGTTCAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
26 6 0.08
27 7 0.09
28 17 0.23
29 16 0.22
30 4 0.05
31 22 0.30
33 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (27 bp):
TTTTTTTCCTAATTTGGTACCTAAACT
Found at i:103739200 original size:58 final size:59
Alignment explanation
Indices: 103739056--103739200 Score: 183
Period size: 58 Copynumber: 2.5 Consensus size: 59
103739046 AATGTTTGAT
*
103739056 AAGTTGAAGTACCAAA-TAGAACAAAAAAATGATTAAGTGTCAAATTAGGAAAAAGAGTC
1 AAGTTG-AGTACCAAATTAGGACAAAAAAATGATTAAGTGTCAAATTAGGAAAAAGAGTC
* *
103739115 AAGTTGAGTACCAAATT-GGATCCAAAAAA-GATTAAGTGTCAACTTAGGAAAAAGTA-TC
1 AAGTTGAGTACCAAATTAGGA-CAAAAAAATGATTAAGTGTCAAATTAGGAAAAAG-AGTC
*
103739173 AAGTTTAGATACCAAATTAGGA-AAAAAA
1 AAGTTGAG-TACCAAATTAGGACAAAAAA
103739201 TGTCAAATTC
Statistics
Matches: 76, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
58 49 0.64
59 24 0.32
60 3 0.04
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (59 bp):
AAGTTGAGTACCAAATTAGGACAAAAAAATGATTAAGTGTCAAATTAGGAAAAAGAGTC
Found at i:103741883 original size:27 final size:27
Alignment explanation
Indices: 103741853--103741946 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
103741843 AACGATCACC
* *
103741853 ACCACCACCACGACGAACTCTTGCATG
1 ACCACCACCACCACGAACACTTGCATG
*
103741880 ACCACCACCACCATGAACACTTGCATG
1 ACCACCACCACCACGAACACTTGCATG
*
103741907 ACCACCACCACCACCACGAACACCTGCATG
1 ---ACCACCACCACCACGAACACTTGCATG
*
103741937 ACCAACACCA
1 ACCACCACCA
103741947 TGAACATCAT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 33 0.57
30 25 0.43
ACGTcount: A:0.34, C:0.45, G:0.11, T:0.11
Consensus pattern (27 bp):
ACCACCACCACCACGAACACTTGCATG
Found at i:103741884 original size:30 final size:29
Alignment explanation
Indices: 103741850--103741946 Score: 126
Period size: 30 Copynumber: 3.3 Consensus size: 29
103741840 GGGAACGATC
*
103741850 ACCACCACCACCACGACGAACTCTTGCATG
1 ACCACCACCACCAC-ACGAACACTTGCATG
*
103741880 ACCACCACCA-C-CATGAACACTTGCATG
1 ACCACCACCACCACACGAACACTTGCATG
*
103741907 ACCACCACCACCACCACGAACACCTGCATG
1 ACCACCACCACCA-CACGAACACTTGCATG
*
103741937 ACCAACACCA
1 ACCACCACCA
103741947 TGAACATCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 23 0.39
28 2 0.03
29 1 0.02
30 33 0.56
ACGTcount: A:0.34, C:0.45, G:0.10, T:0.10
Consensus pattern (29 bp):
ACCACCACCACCACACGAACACTTGCATG
Found at i:103741964 original size:57 final size:56
Alignment explanation
Indices: 103741850--103741957 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 56
103741840 GGGAACGATC
* * * *
103741850 ACCACCACCACCACGACGAACTCTTGCATGACCACCACCACCATGAACACTTGCATG
1 ACCACCACCACCACCACGAACACCTGCATGACCA-CACCACCATGAACACATGCATG
103741907 ACCACCACCACCACCACGAACACCTGCATGACCA-A-CACCATGAACATCATG
1 ACCACCACCACCACCACGAACACCTGCATGACCACACCACCATGAACA-CATG
103741958 ACCATGAGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
54 11 0.24
55 4 0.09
57 31 0.67
ACGTcount: A:0.34, C:0.43, G:0.11, T:0.12
Consensus pattern (56 bp):
ACCACCACCACCACCACGAACACCTGCATGACCACACCACCATGAACACATGCATG
Found at i:103745633 original size:42 final size:42
Alignment explanation
Indices: 103745580--103745667 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
103745570 AACAAAAAAG
103745580 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
1 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
103745622 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
1 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
103745664 AAAA
1 AAAA
103745668 TAGTAAAATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (42 bp):
AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
Found at i:103746617 original size:12 final size:12
Alignment explanation
Indices: 103746602--103746639 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
103746592 TCAAAAAACT
*
103746602 GAGAAAAAGAAG
1 GAGAAGAAGAAG
103746614 GAGAAGAAGAAG
1 GAGAAGAAGAAG
*
103746626 AAGAAGAAG-AG
1 GAGAAGAAGAAG
103746637 GAG
1 GAG
103746640 CAGGAGGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (12 bp):
GAGAAGAAGAAG
Found at i:103747758 original size:31 final size:30
Alignment explanation
Indices: 103747705--103747773 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
103747695 ATACATGAAT
*
103747705 TTTAATTTGGTGTAATTATATACGTAAAAC
1 TTTAATTTGGTGTAAATATATACGTAAAAC
* *
103747735 TTTAATTGTGGT-TCAAATATATACTTGAAAC
1 TTTAATT-TGGTGT-AAATATATACGTAAAAC
103747766 TTTAATTT
1 TTTAATTT
103747774 TGATTTAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.26
31 25 0.74
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (30 bp):
TTTAATTTGGTGTAAATATATACGTAAAAC
Found at i:103747968 original size:29 final size:30
Alignment explanation
Indices: 103747915--103747971 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
103747905 AAGTTGGATC
103747915 AAATCAAAATTTCATGTATAAAATTGCATA
1 AAATCAAAATTTCATGTATAAAATTGCATA
*
103747945 AAATCAAAA-TTCATGTATATAATTGCA
1 AAATCAAAATTTCATGTATAAAATTGCA
103747972 CATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTGCATA
Found at i:103747992 original size:31 final size:29
Alignment explanation
Indices: 103747919--103747995 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
103747909 TGGATCAAAT
*
103747919 CAAAATTTCATGTATAAAATTGCATAAAAT
1 CAAAATTT-ATGTATAAAATTGCATAAAAC
* * *
103747949 CAAAATTCATGTATATAATTGCACATTAAAC
1 CAAAATTTATGTATAAAATTG--CATAAAAC
*
103747980 CATAATTTATGTATAA
1 CAAAATTTATGTATAA
103747996 TTTTGGTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 12 0.32
30 7 0.18
31 19 0.50
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (29 bp):
CAAAATTTATGTATAAAATTGCATAAAAC
Found at i:103748073 original size:6 final size:6
Alignment explanation
Indices: 103748062--103748089 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
103748052 TAATTTTAAA
103748062 AAATTT AAATTT AAATTT AAATTT AAAT
1 AAATTT AAATTT AAATTT AAATTT AAAT
103748090 ATATGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:103748287 original size:23 final size:21
Alignment explanation
Indices: 103748249--103748292 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
103748239 ATAATATTAA
*
103748249 ATTTTATCAGAGTTAACATTT
1 ATTTTATCAGAATTAACATTT
*
103748270 ATTTTATAACAGAATTAATATTT
1 ATTTTAT--CAGAATTAACATTT
103748293 TTATAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (21 bp):
ATTTTATCAGAATTAACATTT
Found at i:103748367 original size:47 final size:49
Alignment explanation
Indices: 103748292--103748387 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
103748282 AATTAATATT
* * *
103748292 TTTATAATTTCTTTTAATTTAAAGTTAAATTACAAATGAAAATAAATTG
1 TTTATAATTTATTTTAATTTAAAATTAAACTACAAATGAAAATAAATTG
* *
103748341 TTTATAA-TTATTTT-ATTTAAAATTAAACTGCAAATGAAAATATATTG
1 TTTATAATTTATTTTAATTTAAAATTAAACTACAAATGAAAATAAATTG
103748388 ACATCATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 29 0.69
48 6 0.14
49 7 0.17
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (49 bp):
TTTATAATTTATTTTAATTTAAAATTAAACTACAAATGAAAATAAATTG
Found at i:103752548 original size:46 final size:46
Alignment explanation
Indices: 103752485--103752843 Score: 495
Period size: 46 Copynumber: 7.8 Consensus size: 46
103752475 TTCGACATGA
* * * * * *
103752485 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
* ** **
103752531 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATGTCACGT
*
103752578 TGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
* * *
103752624 TGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATGTAACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
*
103752670 TGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
* *
103752716 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
* * * *
103752762 TGCCATGGTATCTTTCAACCATTGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
103752808 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
103752844 TCTATCAGAG
Statistics
Matches: 287, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 3 0.01
46 246 0.86
47 38 0.13
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
Found at i:103755009 original size:11 final size:11
Alignment explanation
Indices: 103754993--103755044 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
103754983 TATACTAAAT
103754993 AAATAATAATA
1 AAATAATAATA
*
103755004 AAATAAT-ATT
1 AAATAATAATA
* *
103755014 AAATATCTCATA
1 AAATA-ATAATA
*
103755026 AAATATTAATA
1 AAATAATAATA
103755037 AAATAATA
1 AAATAATA
103755045 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:103755601 original size:20 final size:18
Alignment explanation
Indices: 103755576--103755621 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
103755566 TCAACAGTGA
103755576 AAAAAAAACGCTAAAAACAG
1 AAAAAAAA-GCTAAAAA-AG
* *
103755596 AAAAAAAAGCTGAAAATG
1 AAAAAAAAGCTAAAAAAG
103755614 AAAAAAAA
1 AAAAAAAA
103755622 AATAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 7 0.29
20 8 0.33
ACGTcount: A:0.74, C:0.09, G:0.11, T:0.07
Consensus pattern (18 bp):
AAAAAAAAGCTAAAAAAG
Found at i:103755622 original size:20 final size:19
Alignment explanation
Indices: 103755573--103755623 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
103755563 TCATCAACAG
*
103755573 TGAAAAAAAAACGCTAAAA
1 TGAAAAAAAAAAGCTAAAA
** *
103755592 ACAGAAAAAAAAGCTGAAAA
1 TGAAAAAAAAAAGCT-AAAA
103755612 TGAAAAAAAAAA
1 TGAAAAAAAAAA
103755624 TAAAAAAATA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.73, C:0.08, G:0.12, T:0.08
Consensus pattern (19 bp):
TGAAAAAAAAAAGCTAAAA
Found at i:103755828 original size:23 final size:23
Alignment explanation
Indices: 103755797--103755848 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
103755787 TTTCAGGAAC
*
103755797 AAAAAAGGAGAAGAAGAA-AAAG
1 AAAAAAGGAGAAGAAAAAGAAAG
103755819 AAAAGAAGGAGAAGAAAAAGAAAG
1 AAAA-AAGGAGAAGAAAAAGAAAG
103755843 AAAAAA
1 AAAAAA
103755849 AGGGGGAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 15 0.56
24 8 0.30
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (23 bp):
AAAAAAGGAGAAGAAAAAGAAAG
Found at i:103756339 original size:17 final size:17
Alignment explanation
Indices: 103756309--103756380 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 17
103756299 CCTTTTACAA
* *
103756309 AAAATAGTATAAAAAAT
1 AAAATACTAGAAAAAAT
103756326 AAAATACT--AAAAAAT
1 AAAATACTAGAAAAAAT
* * *
103756341 ATATTAAT-GAAAAAAT
1 AAAATACTAGAAAAAAT
* *
103756357 AAAATACGAGAAGAAAT
1 AAAATACTAGAAAAAAT
103756374 AAAATAC
1 AAAATAC
103756381 GAAAAAAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
15 12 0.27
16 11 0.25
17 21 0.48
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (17 bp):
AAAATACTAGAAAAAAT
Found at i:103756654 original size:134 final size:136
Alignment explanation
Indices: 103756449--103756875 Score: 500
Period size: 152 Copynumber: 3.0 Consensus size: 136
103756439 ATAAATTATG
* * * **
103756449 AAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAAAAATACGAACAAGGTGCCAAAGGCAG
1 AAAATAATATATTTTAAAAAATAAAATACGAAAATAAAAAAATACGAACAAAGTG-CAAAATCAG
* *
103756514 GGTTATTTATTAAATTAATAT-AAAAAA-ACTTAAATAATACATTTAAAATATTTTTTGCTAAAA
65 GGTTATTTATTAAATTAATATAAAAAAACACTTAAATAATACATTTGAAACATTTTTTGCTAAAA
103756577 TAATATA
130 TAATATA
* * *
103756584 AAAATAATATATTTTAAAAAATAATATACAAAAAT-AAAAAATACGAATAAAGTGCTAAAATCAG
1 AAAATAATATATTTTAAAAAATAAAATACGAAAATAAAAAAATACGAACAAAGTGC-AAAATCAG
**
103756648 GGTTATTTATTAAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACTAAAA
65 GGTTATTTATTAAATTAATATAAAAAAACACTTAAATAATACATTTGAAACATT-T-T--T----
** *
103756713 TAATATAAAGAAATAAAATA
122 T--GCT--A-AAATAATATA
* * *
103756733 CGAAAATAATATATTTTAAAAAATAAGATACGAAAATAAAAAAATAGGAAGAAAGTGGCAAAATC
1 --AAAATAATATATTTTAAAAAATAAAATACGAAAATAAAAAAATACGAACAAAGT-GCAAAATC
*
103756798 AGGGTTATTTATTAAATTAATATAAAAAAACACTTACATAATACATTTGAAACATTTTTTGCTAA
63 AGGGTTATTTATTAAATTAATATAAAAAAACACTTAAATAATACATTTGAAACATTTTTTGCTAA
103756863 AATAATATA
128 AATAATATA
103756872 AAAA
1 AAAA
103756876 ATAAAATACG
Statistics
Matches: 247, Mismatches: 25, Indels: 38
0.80 0.08 0.12
Matches are distributed among these distances:
133 1 0.00
134 42 0.17
135 37 0.15
136 23 0.09
137 5 0.02
138 1 0.00
139 9 0.04
140 2 0.01
142 1 0.00
144 2 0.01
146 1 0.00
148 2 0.01
149 9 0.04
150 1 0.00
151 34 0.14
152 75 0.30
153 2 0.01
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (136 bp):
AAAATAATATATTTTAAAAAATAAAATACGAAAATAAAAAAATACGAACAAAGTGCAAAATCAGG
GTTATTTATTAAATTAATATAAAAAAACACTTAAATAATACATTTGAAACATTTTTTGCTAAAAT
AATATA
Found at i:103756832 original size:152 final size:151
Alignment explanation
Indices: 103756584--103756921 Score: 554
Period size: 152 Copynumber: 2.2 Consensus size: 151
103756574 AAATAATATA
* *
103756584 AAAATAATATATTTTAAAAAATAATATACAAAAAT-AAAAAATACGAATAAAGTGCTAAAATCAG
1 AAAATAATATATTTTAAAAAATAATATACGAAAATAAAAAAATACGAAGAAAGTGCTAAAATCAG
103756648 GGTTATTTATTAAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACTAAAA
66 GGTTATTTATTAAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACTAAAA
103756713 TAATATAAAGAAATAAAATACG
131 TAATATAAA-AAATAAAATACG
* *
103756735 AAAATAATATATTTTAAAAAATAAGATACGAAAATAAAAAAATAGGAAGAAAGTGGC-AAAATCA
1 AAAATAATATATTTTAAAAAATAATATACGAAAATAAAAAAATACGAAGAAAGT-GCTAAAATCA
** * * * *
103756799 GGGTTATTTATTAAATTAATATAAAAAAACACTTACATAATACATTTGAAACATTTTTTGCTAAA
65 GGGTTATTTATTAAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACTAAA
103756864 ATAATATAAAAAATAAAATACG
130 ATAATATAAAAAATAAAATACG
103756886 AAAATAATATATTTTAAAAAATAATATACGAAAATA
1 AAAATAATATATTTTAAAAAATAATATACGAAAATA
103756922 TTTTACTTAT
Statistics
Matches: 174, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
151 80 0.46
152 92 0.53
153 2 0.01
ACGTcount: A:0.58, C:0.06, G:0.07, T:0.28
Consensus pattern (151 bp):
AAAATAATATATTTTAAAAAATAATATACGAAAATAAAAAAATACGAAGAAAGTGCTAAAATCAG
GGTTATTTATTAAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACTAAAA
TAATATAAAAAATAAAATACG
Found at i:103759491 original size:27 final size:27
Alignment explanation
Indices: 103759461--103759529 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
103759451 ACAATAATAA
*
103759461 TAACTAACAATAATTAGGG-TTTTTTAC
1 TAAC-AACAATAATAAGGGTTTTTTTAC
*
103759488 TAACAATAATAATAAGGGTTTTTTTAC
1 TAACAACAATAATAAGGGTTTTTTTAC
* *
103759515 TAACAATATTAATAA
1 TAACAACAATAATAA
103759530 CTAACAACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.32
27 26 0.68
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (27 bp):
TAACAACAATAATAAGGGTTTTTTTAC
Found at i:103759505 original size:26 final size:27
Alignment explanation
Indices: 103759469--103759529 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
103759459 AATAACTAAC
*
103759469 AATAATTAGGG-TTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
103759495 AATAATAAGGGTTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
*
103759522 ATTAATAA
1 AATAATAA
103759530 CTAACAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.41
Consensus pattern (27 bp):
AATAATAAGGGTTTTTTTACTAACAAT
Found at i:103759836 original size:19 final size:19
Alignment explanation
Indices: 103759812--103759876 Score: 103
Period size: 19 Copynumber: 3.4 Consensus size: 19
103759802 TTTTTTTTTA
103759812 TTTTTTCGTTTTCAGCTTT
1 TTTTTTCGTTTTCAGCTTT
* *
103759831 TTTTTTCGTTTTTAGCTCT
1 TTTTTTCGTTTTCAGCTTT
103759850 TTTTTTCGTTTTCAGCCTTT
1 TTTTTTCGTTTTCAG-CTTT
103759870 TTTTTTC
1 TTTTTTC
103759877 ACTGTTGAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 31 0.76
20 10 0.24
ACGTcount: A:0.05, C:0.17, G:0.09, T:0.69
Consensus pattern (19 bp):
TTTTTTCGTTTTCAGCTTT
Found at i:103760071 original size:2 final size:2
Alignment explanation
Indices: 103760064--103760095 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
103760054 ATTGTTACTT
103760064 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
103760096 AAGTATTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:103766954 original size:29 final size:29
Alignment explanation
Indices: 103766885--103766954 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
103766875 AAAGTATACT
* *
103766885 TATTTTTATACTTTGATATTTAAATTTTC
1 TATTTTTATATTTTGATACTTAAATTTTC
*
103766914 T-TTTTGTCTATTTTGATACTTAAATTTTC
1 TATTTT-TATATTTTGATACTTAAATTTTC
103766943 TATTTTTATATT
1 TATTTTTATATT
103766955 CTGTAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.11
29 27 0.77
30 4 0.11
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.64
Consensus pattern (29 bp):
TATTTTTATATTTTGATACTTAAATTTTC
Found at i:103780582 original size:9 final size:9
Alignment explanation
Indices: 103780568--103780592 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
103780558 ATCATAGAAT
103780568 TTTTTTTTA
1 TTTTTTTTA
103780577 TTTTTTTTA
1 TTTTTTTTA
103780586 TTTTTTT
1 TTTTTTT
103780593 GCAAAATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:103781431 original size:46 final size:46
Alignment explanation
Indices: 103781206--103781433 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
103781196 TTATCTTTGG
* * * *
103781206 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* *
103781252 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* **
103781298 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
103781344 CATGTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
103781390 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
103781434 TTCAGAGAGC
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 161 0.98
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:103785509 original size:10 final size:10
Alignment explanation
Indices: 103785496--103785529 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
103785486 ATTTTTTTAA
*
103785496 ATGTATTTAT
1 ATGTATATAT
103785506 ATGTATATAT
1 ATGTATATAT
103785516 ATGTATATAT
1 ATGTATATAT
103785526 ATGT
1 ATGT
103785530 CTTCTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
ATGTATATAT
Found at i:103792210 original size:44 final size:44
Alignment explanation
Indices: 103792162--103792261 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 44
103792152 TTAGCCACTG
**
103792162 GTCTTATC-TCTCTGAAGTAGCAA-GAGAGCAGGTTGAAAA-TACAA
1 GTCTTATCTTCT-TGAAGTAGCAAGGA-AGCAGACTGAAAATTAC-A
*
103792206 GTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACA
1 GTCTTATCTTCTTGAAGTAGCAAGGAAGCAGACTGAAAATTACA
103792250 GATCTTATCTTC
1 G-TCTTATCTTC
103792262 ATGTATCGGC
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 31 0.63
45 18 0.37
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (44 bp):
GTCTTATCTTCTTGAAGTAGCAAGGAAGCAGACTGAAAATTACA
Found at i:103792362 original size:178 final size:178
Alignment explanation
Indices: 103792060--103792461 Score: 673
Period size: 178 Copynumber: 2.3 Consensus size: 178
103792050 GGGTAACAGG
* ** *
103792060 CTGAAAATTACAGATCTTATC-TCTATGTATCGGCTATGGAGTAGATCGAAAATGGTGAGTCTTA
1 CTGAAAATTACAGATCTTATCTTC-ATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTA
**
103792124 TCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTGAAGTAGCAAGAGA
65 TCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAAGTAGCAAGAGA
*
103792189 GCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGA
130 GCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
103792238 CTGAAAATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTAT
*
103792303 CTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCT-AAGGTAGCAAGAGA
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAA-GTAGCAAGAGA
* *
103792367 GCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGA
130 GCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
*
103792416 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 CTGAAAATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGAT
103792462 TTTAGCCACC
Statistics
Matches: 211, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
177 2 0.01
178 207 0.98
179 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (178 bp):
CTGAAAATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTAT
CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAAGTAGCAAGAGAG
CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
Found at i:103792387 original size:44 final size:43
Alignment explanation
Indices: 103792339--103792542 Score: 132
Period size: 44 Copynumber: 4.6 Consensus size: 43
103792329 TTTAGCCACC
* *
103792339 AGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACA
1 AGTCTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACA
* * *
103792383 AGTCTTATCT-TCCTGAGGTATCAAGGAAGCAGACTGAAAATTAC-
1 AGTCTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGA-TACA
* * ** ** *
103792427 AGATCTTATCTC-CATGTA--TCGGCTATGGAGCAGATTTTAGCCACC
1 AG-TCTTATCTCTC-TG-AGGT-AGC-AAGGAGCAGATTGAAGATACA
* *
103792472 AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
1 AGTCTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACA
*
103792516 AGTCTTATCT-TCTTGGGGTAGCAAGGA
1 AGTCTTATCTCTC-TGAGGTAGCAAGGA
103792543 AGCAAACTGA
Statistics
Matches: 120, Mismatches: 25, Indels: 31
0.68 0.14 0.18
Matches are distributed among these distances:
43 9 0.08
44 81 0.68
45 26 0.22
46 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCTCTGAGGTAGCAAGGAGCAGATTGAAGATACA
Found at i:103792444 original size:133 final size:133
Alignment explanation
Indices: 103792297--103792594 Score: 515
Period size: 133 Copynumber: 2.2 Consensus size: 133
103792287 AAATGGCGAG
* *
103792297 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* *
103792362 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
103792427 AGA
131 AGA
*
103792430 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* *
103792495 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGGGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
103792560 AGA
131 AGA
* *
103792563 TCTTATCTACATGTATCGGCTATAGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
103792595 CAGAAATGGC
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 156 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
AGA
Found at i:103792637 original size:311 final size:311
Alignment explanation
Indices: 103792119--103792766 Score: 1109
Period size: 311 Copynumber: 2.1 Consensus size: 311
103792109 AAATGGTGAG
** *
103792119 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTGAAGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCA
*
103792184 AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
* * *
103792249 AGATCTTATCTTCATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCTATGTATC
131 AGATCTTATCTACATGTATCGGCTATAGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATC
*
103792314 GGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTA-AGGTAGCAAGAGAGCAGGTTGAAG
196 GGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTC-AGAGGTAGCAAGAGAGCAAGTTGAAG
*
103792378 ATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGACTGAAAATTACAGA
260 ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGA
*
103792430 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCA
* *
103792495 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGGGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
* * *
103792560 AGATCTTATCTACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATT
131 AGATCTTATCTACATGTATCGGCTATAGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATC
**
103792625 GGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAGGTAGCAAGAGAGCAAGTTGAAGA
196 GGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCAGAGGTAGCAAGAGAGCAAGTTGAAGA
* *
103792690 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATTATAGA
261 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGA
103792741 TCTTATCTCCATGTATCGGCTATGGA
1 TCTTATCTCCATGTATCGGCTATGGA
103792767 ATAGATCAAA
Statistics
Matches: 317, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
310 1 0.00
311 316 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (311 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCA
AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
AGATCTTATCTACATGTATCGGCTATAGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATC
GGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCAGAGGTAGCAAGAGAGCAAGTTGAAGA
TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGA
Found at i:103793036 original size:44 final size:44
Alignment explanation
Indices: 103792988--103793073 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
103792978 ATCGGCTATG
** * *
103792988 GAGCAGATTTTAGCCACCAGTCTTATC-TCTCTGAGGTAGCAAGA
1 GAGCAGATTGAAGACACAAGTCTTATCTTC-CTGAGGTAGCAAGA
* *
103793032 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 GAGCAGATTGAAGACACAAGTCTTATCTTCCTGAGGTAGCAA
103793074 TGAAACAGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
GAGCAGATTGAAGACACAAGTCTTATCTTCCTGAGGTAGCAAGA
Found at i:103793059 original size:489 final size:487
Alignment explanation
Indices: 103792060--103792956 Score: 1449
Period size: 489 Copynumber: 1.8 Consensus size: 487
103792050 GGGTAACAGG
* * *
103792060 CTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGTAGATCGAAAATGGTGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCTATGTATCGGCTATAGAGCAGATCGAAAATGGCGAGTCTTAT
*
103792125 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTGAAGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAAGTAGCAAGAGAG
* *
103792190 CAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCT
131 CAAGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCT
* * *
103792255 TATCTTCATGTATCGGCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCTATGTATCGGCTAT
196 TATCTCCATGTATCGGCTATGGAACAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
* *
103792320 GGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAG
261 GGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAGATACAAG
* * * *
103792385 TCTTATCTTCCTGAGGTATCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
326 TCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTACAGATCTTATCTACATGTATCGGC
* * ** * *
103792450 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
391 TATAGAGCAGA-TTCAGAAACCAGCCTTATCTCTCTGA-GTAGCAAGAGAGCAGATTGAAGACAC
*
103792515 AAGTCTTATCTTCTTGGGGTAGCAAGGAAGCAAA
454 AAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAA
103792549 CTGAAAATTACAGATCTTATCTAC-ATGTATCGGCTATAGAGCAGATC-AGAAATGGCGAGTCTT
1 CTGAAAATTACAGATCTTATCT-CTATGTATCGGCTATAGAGCAGATCGA-AAATGGCGAGTCTT
* *
103792612 ATCTCCATGTATTGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAGGTAGCAAGAG
64 ATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAAGTAGCAAGAG
* * *
103792677 AGCAAGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATTATAGAT
129 AGCAAGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGAT
* * *
103792742 CTTATCTCCATGTATCGGCTATGGAATAGATCAAAAATGGTGAGTCTTATCTCCATGTATCGGCT
194 CTTATCTCCATGTATCGGCTATGGAACAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCT
*
103792807 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGTAAGAGAGCAGGTTAAAGATACA
259 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAGATACA
*
103792872 AGTCTTATCTTCCTGAGGTGGCAAGGAAGCAAACTAAAAATTACAGATCTTATCTACATGTATCG
324 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTACAGATCTTATCTACATGTATCG
103792937 GCTATAGAGCAGA-TCAGAAA
389 GCTATAGAGCAGATTCAGAAA
103792957 TGGCGAGTCT
Statistics
Matches: 377, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
487 4 0.01
488 1 0.00
489 371 0.98
490 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (487 bp):
CTGAAAATTACAGATCTTATCTCTATGTATCGGCTATAGAGCAGATCGAAAATGGCGAGTCTTAT
CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAAGTAGCAAGAGAG
CAAGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCT
TATCTCCATGTATCGGCTATGGAACAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
GGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAGATACAAG
TCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTACAGATCTTATCTACATGTATCGGC
TATAGAGCAGATTCAGAAACCAGCCTTATCTCTCTGAGTAGCAAGAGAGCAGATTGAAGACACAA
GTCTTATCTTCTTGAGGTAGCAAGGAAGCAAA
Found at i:103794378 original size:178 final size:178
Alignment explanation
Indices: 103792430--103794375 Score: 3072
Period size: 178 Copynumber: 10.9 Consensus size: 178
103792420 AAATTACAGA
103792430 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
103792495 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGGGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * *
103792560 AGATCTTATCTACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* ** * *
103792608 TCTTATCTCCATGTATTGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCAGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
103792673 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATTAT
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
** *
103792738 AGATCTTATCTCCATGTATCGGCTATGGAATAGATCAAAAATGGTGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* *
103792786 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGTA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * * *
103792851 AGAGAGCAGGTTAAAGATACAAGTCTTATCTTCCTGAGGTGGCAAGGAAGCAAACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * *
103792916 AGATCTTATCTACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
103792964 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
103793029 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGGAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* *
103793094 AGATCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* *
103793142 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
103793207 AAAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
*
103793272 AGATCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
103793320 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
*
103793385 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * *
103793450 AGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* *
103793498 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTGGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
103793563 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * *
103793628 AGATCATATCTCTATGTATCGTCTATGGAGCAGATCAAAAATGGCGAG
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* * *
103793676 TCTTATCTCCATGTATCGGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
**
103793741 AGAGAGCATATTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTA
* * * *
103793805 CAGATCATATCTCCATGTATCGGCTATGAAGCAGATCGAAAATAGCGAG
130 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* *
103793854 TCTTATCTACATGTATCGGCTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
*
103793919 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT-AAATATTA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTA
** * * * * *
103793983 CAGATCTTATCTCCATGTATCCACTATGGAGCAGATCGAAGACGGTGAA
130 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* * * *
103794032 CCTTATCTCCATGTATCGGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
** * *
103794097 AGAGAGCATATTGAAGATACAAGTCTTATCATCCTGAGGTAGCAAGAAAGCAGACT-AAAGATTA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTA
* * * *
103794161 CAGATCATATCTCCATGTATCGGCTATGAAGCAGATCGAAAATAGCGAG
130 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
103794210 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
*
103794275 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT-AAATATTA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTA
**
103794339 CAGATCTTATCTCCATGTATCCACTATGGAGCAGATC
130 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATC
103794376 GAAGACGGCG
Statistics
Matches: 1622, Mismatches: 145, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
177 3 0.00
178 1619 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (178 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
Found at i:103794548 original size:88 final size:88
Alignment explanation
Indices: 103794389--103794597 Score: 276
Period size: 88 Copynumber: 2.4 Consensus size: 88
103794379 GACGGCGAAC
* * * * *
103794389 CTTATCTCCCTAAGTAGTAATGGAGCAGATCGAAGACGGCGAGCCTTAACCCCCTAGGCAGGAGG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAAGCAGGAGG
* **
103794454 GTAACAGGCGGGAAATTACAAAT
66 GAAACAGGCGAAAAATTACAAAT
* * *
103794477 CTTATCTCTCTAAGCAGTAGTGGGGCAGATTGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAAGCAGGAGG
* * *
103794542 GAAACAGGCTAAAAATTGCAGAT
66 GAAACAGGCGAAAAATTACAAAT
*
103794565 CTTATCTCT-TAAACAGTAGTGGAGCAGATTGAA
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAA
103794598 ACGAGTTCCT
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 22 0.21
88 83 0.79
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (88 bp):
CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAAGCAGGAGG
GAAACAGGCGAAAAATTACAAAT
Found at i:103796214 original size:10 final size:10
Alignment explanation
Indices: 103796201--103796234 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
103796191 TTTTTTTTAA
*
103796201 ATGTATTTAT
1 ATGTATATAT
103796211 ATGTATATAT
1 ATGTATATAT
103796221 ATGTATATAT
1 ATGTATATAT
103796231 ATGT
1 ATGT
103796235 CTTCTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
ATGTATATAT
Found at i:103798952 original size:30 final size:31
Alignment explanation
Indices: 103798896--103798954 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
103798886 ATAAAAATTA
103798896 ATATAATAATAAATTTAGTATTTAATTTTTAT
1 ATATAATAATAAATTTAGTA-TTAATTTTTAT
*
103798928 ATATTATAAT-AATTTAGTCA-TAATTTT
1 ATATAATAATAAATTTAGT-ATTAATTTT
103798955 AAAAAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 7 0.28
31 8 0.32
32 10 0.40
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (31 bp):
ATATAATAATAAATTTAGTATTAATTTTTAT
Found at i:103799231 original size:3 final size:3
Alignment explanation
Indices: 103799223--103799250 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
103799213 CTCTCCCTCT
103799223 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
103799251 ATTTTTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.32, T:0.32
Consensus pattern (3 bp):
CTG
Found at i:103800572 original size:20 final size:20
Alignment explanation
Indices: 103800547--103800585 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
103800537 CAAGTTTAAA
103800547 TTTATA-GTAATTATTTTTAT
1 TTTATATGT-ATTATTTTTAT
*
103800567 TTTATATGTATTTTTTTTA
1 TTTATATGTATTATTTTTA
103800586 ATGAGATACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTATATGTATTATTTTTAT
Found at i:103803123 original size:22 final size:22
Alignment explanation
Indices: 103803098--103803167 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
103803088 TTTTTATTTG
103803098 ACTTCGCGATTTTAAATTTGTC
1 ACTTCGCGATTTTAAATTTGTC
** ** * *
103803120 ACTT--AAATATAAAAATTATTTG
1 ACTTCGCGAT-TTTAAATT-TGTC
103803142 ACTTCGCGATTTTAAATTTGTC
1 ACTTCGCGATTTTAAATTTGTC
103803164 ACTT
1 ACTT
103803168 AAATATATTT
Statistics
Matches: 32, Mismatches: 12, Indels: 8
0.62 0.23 0.15
Matches are distributed among these distances:
20 2 0.06
21 6 0.19
22 16 0.50
23 6 0.19
24 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.44
Consensus pattern (22 bp):
ACTTCGCGATTTTAAATTTGTC
Found at i:103803140 original size:44 final size:44
Alignment explanation
Indices: 103803091--103803174 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
103803081 ATATTTTTTT
103803091 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
1 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
103803135 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATA
1 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATA
103803175 TTTTTATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (44 bp):
TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
Found at i:103804211 original size:19 final size:18
Alignment explanation
Indices: 103804189--103804268 Score: 54
Period size: 19 Copynumber: 4.2 Consensus size: 18
103804179 ATGATCTTTT
103804189 AAATTTTAAAATATTTAAA
1 AAATTTTAAAAT-TTTAAA
* **
103804208 AAA-TTAAAAATTTATTTTTA
1 AAATTTTAAAA--T-TTTAAA
*
103804228 AAATTTTAAAATTATTGAA
1 AAATTTTAAAATT-TTAAA
* *
103804247 AAAGTTTAAAATTATAAA
1 AAATTTTAAAATTTTAAA
103804265 AAAT
1 AAAT
103804269 ATTTGTTTAA
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
18 13 0.28
19 19 0.40
20 9 0.19
21 6 0.13
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
AAATTTTAAAATTTTAAA
Found at i:103804234 original size:8 final size:8
Alignment explanation
Indices: 103804185--103804265 Score: 51
Period size: 8 Copynumber: 10.0 Consensus size: 8
103804175 TTAAATGATC
103804185 TTTT-AAA
1 TTTTAAAA
103804192 TTTTAAAA
1 TTTTAAAA
103804200 TATTTAAAA
1 T-TTTAAAA
**
103804209 AATTAAAA
1 TTTTAAAA
* *
103804217 ATTT--AT
1 TTTTAAAA
103804223 TTTTAAAA
1 TTTTAAAA
103804231 TTTTAAAA
1 TTTTAAAA
103804239 TTATTGAAAAA
1 TT-TT--AAAA
*
103804250 GTTTAAAA
1 TTTTAAAA
*
103804258 TTATAAAA
1 TTTTAAAA
103804266 AATATTTGTT
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
6 4 0.07
7 4 0.07
8 34 0.59
9 9 0.16
10 2 0.03
11 5 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
TTTTAAAA
Done.