Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 348 of 378
Found at i:104792313 original size:13 final size:13
Alignment explanation
Indices: 104792295--104792463 Score: 52
Period size: 13 Copynumber: 13.1 Consensus size: 13
104792285 TAGTTATTAA
104792295 AAAATATATACAT
1 AAAATATATACAT
***
104792308 AAAATAATATGTTT
1 AAAAT-ATATACAT
*
104792322 AAAATATATATAT
1 AAAATATATACAT
*
104792335 AAATAATATAGTA-TT
1 -AA-AATATA-TACAT
104792350 AAAAATATATACAT
1 -AAAATATATACAT
* * *
104792364 GATATATATAAAAT
1 AAAATATAT-ACAT
* *
104792378 ATAATAT-TA-AA
1 AAAATATATACAT
*
104792389 AAGATATATATACGT
1 AA-A-ATATATACAT
*
104792404 AATATATATA-A-
1 AAAATATATACAT
*
104792415 AAAATGTATACAT
1 AAAATATATACAT
*
104792428 --AATATAGTA-TT
1 AAAATATA-TACAT
*
104792439 AAAATATTTACAT
1 AAAATATATACAT
104792452 --AATATATACAT
1 AAAATATATACAT
104792463 A
1 A
104792464 TTAGAAATAA
Statistics
Matches: 113, Mismatches: 26, Indels: 35
0.65 0.15 0.20
Matches are distributed among these distances:
11 26 0.23
12 7 0.06
13 38 0.34
14 28 0.25
15 12 0.11
16 2 0.02
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (13 bp):
AAAATATATACAT
Found at i:104792358 original size:14 final size:14
Alignment explanation
Indices: 104792294--104792429 Score: 67
Period size: 13 Copynumber: 10.1 Consensus size: 14
104792284 ATAGTTATTA
*
104792294 AAAAATATATACAT
1 AAAAATATATATAT
*
104792308 -AAAATA-ATATGTT
1 AAAAATATATAT-AT
*
104792321 TAAAATATATATAT
1 AAAAATATATATAT
104792335 AAATAATATAGTAT-T
1 AAA-AATATA-TATAT
*
104792350 AAAAATATATACAT
1 AAAAATATATATAT
*
104792364 ---GATATATATA-
1 AAAAATATATATAT
*
104792374 AAATATA-ATAT-T
1 AAAAATATATATAT
*
104792386 AAAAAGATATATAT
1 AAAAATATATATAT
**
104792400 ACGTAATATATATA-
1 A-AAAATATATATAT
* *
104792414 AAAAATGTATACAT
1 AAAAATATATATAT
104792428 AA
1 AA
104792430 TATAGTATTA
Statistics
Matches: 91, Mismatches: 17, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
11 8 0.09
12 12 0.13
13 24 0.26
14 21 0.23
15 23 0.25
16 3 0.03
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (14 bp):
AAAAATATATATAT
Found at i:104792377 original size:65 final size:65
Alignment explanation
Indices: 104792300--104792444 Score: 168
Period size: 65 Copynumber: 2.2 Consensus size: 65
104792290 ATTAAAAAAT
* * * * *
104792300 ATATACATAAAATAAT-ATGTTTAAAATATATATATAAATAATATAGTATTAAAAATATATACAT
1 ATATATATAAAATAATAATATTAAAAAGATATATATAAATAATATA-TATAAAAAATATATACAT
*
104792364 G
65 A
** *
104792365 ATATATATAAAAT-ATAATATTAAAAAGATATATATACGTAATATATATAAAAAATGTATACATA
1 ATATATATAAAATAATAATATTAAAAAGATATATATAAATAATATATATAAAAAATATATACATA
104792429 ATATAGTATTAAAATA
1 ATATA-TA-TAAAATA
104792445 TTTACATAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 23 0.34
65 38 0.57
66 6 0.09
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (65 bp):
ATATATATAAAATAATAATATTAAAAAGATATATATAAATAATATATATAAAAAATATATACATA
Found at i:104792396 original size:38 final size:37
Alignment explanation
Indices: 104792327--104792416 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 37
104792317 TGTTTAAAAT
* *
104792327 ATATATATAAATAATATAGTATT-AAAAATATATACATG
1 ATATATAT-AA-AATATAATATTAAAAAATATATACATA
*
104792365 ATATATATAAAATATAATATTAAAAAGATATATATACGTA
1 ATATATATAAAATATAATATT-AAAA-A-ATATATACATA
104792405 ATATATATAAAA
1 ATATATATAAAA
104792417 AATGTATACA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
36 10 0.22
37 2 0.04
38 11 0.24
39 1 0.02
40 21 0.47
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (37 bp):
ATATATATAAAATATAATATTAAAAAATATATACATA
Found at i:104792409 original size:36 final size:36
Alignment explanation
Indices: 104792327--104792416 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 36
104792317 TGTTTAAAAT
* *
104792327 ATATATATAAATAATATAGTATTAAAAATATATACATG
1 ATATATAT-AA-AATATAATATTAAAAATATATACACG
*
104792365 ATATATATAAAATATAATATTAAAAAGATATATATACG
1 ATATATATAAAATATAATATT-AAAA-ATATATACACG
104792403 TAATATATATAAAA
1 --ATATATATAAAA
104792417 AATGTATACA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
36 10 0.22
37 6 0.13
38 17 0.38
40 12 0.27
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (36 bp):
ATATATATAAAATATAATATTAAAAATATATACACG
Found at i:104792424 original size:24 final size:24
Alignment explanation
Indices: 104792397--104792459 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
104792387 AAAAGATATA
*
104792397 TATACGTAATATATA-TAAAAAAT
1 TATACATAATATATATTAAAAAAT
*
104792420 GTATACATAATATAGTATTAAAATAT
1 -TATACATAATATA-TATTAAAAAAT
104792446 T-TACATAATATATA
1 TATACATAATATATA
104792460 CATATTAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 2 0.06
24 23 0.66
25 3 0.09
26 7 0.20
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (24 bp):
TATACATAATATATATTAAAAAAT
Found at i:104792538 original size:21 final size:20
Alignment explanation
Indices: 104792509--104792562 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
104792499 TAATACTACA
*
104792509 TAAATATATACATATATATAT
1 TAAACATATACATATATA-AT
*
104792530 TAAAGATATATACATATATAAT
1 T-AA-ACATATACATATATAAT
*
104792552 AAAACATATAC
1 TAAACATATAC
104792563 TAATATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 7 0.24
21 3 0.10
22 4 0.14
23 15 0.52
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAACATATACATATATAAT
Found at i:104792642 original size:25 final size:24
Alignment explanation
Indices: 104792614--104792660 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
104792604 ATAATATGTA
*
104792614 TATAACATGGTATTAAAAATATGGG
1 TATAACATAGTATT-AAAATATGGG
* *
104792639 TATAATATAGTATTTAAATATG
1 TATAACATAGTATTAAAATATG
104792661 TATACATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.45, C:0.02, G:0.15, T:0.38
Consensus pattern (24 bp):
TATAACATAGTATTAAAATATGGG
Found at i:104792771 original size:3 final size:3
Alignment explanation
Indices: 104792763--104792841 Score: 56
Period size: 3 Copynumber: 26.7 Consensus size: 3
104792753 CGAAACTAAA
** * * *
104792763 AAT AAT AAT TCT AAT AAT AGT AA- AGAT -AT ACT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* *
104792807 AAT AAT AAT AAC GAT AAT AAT AA- ATAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AA
104792842 ATAACATTAA
Statistics
Matches: 57, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
2 4 0.07
3 52 0.91
4 1 0.02
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:104792814 original size:15 final size:15
Alignment explanation
Indices: 104792794--104792829 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
104792784 AAAGATATAC
104792794 TAATAATAACAATAA
1 TAATAATAACAATAA
*
104792809 TAATAATAACGATAA
1 TAATAATAACAATAA
104792824 TAATAA
1 TAATAA
104792830 ATATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (15 bp):
TAATAATAACAATAA
Found at i:104797566 original size:17 final size:18
Alignment explanation
Indices: 104797517--104797568 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 18
104797507 AAAAAAAAAA
* *
104797517 TTTATATATTCTTTAGATT
1 TTTATAGATTTTTTA-ATT
* *
104797536 TTTTTAGAATTTTTAATT
1 TTTATAGATTTTTTAATT
104797554 TTTATA-ATTTTTTAA
1 TTTATAGATTTTTTAA
104797569 AATATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 8 0.30
18 8 0.30
19 11 0.41
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTATAGATTTTTTAATT
Found at i:104802985 original size:27 final size:28
Alignment explanation
Indices: 104802954--104803017 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
104802944 ATCTTGAAAA
* *
104802954 CTAAGGT-GAAGAAGTTTCCATTTTAAC
1 CTAAGGTAAAAGAAATTTCCATTTTAAC
*
104802981 CTAA-GTAAAAGAAATTTCTATTTTAAC
1 CTAAGGTAAAAGAAATTTCCATTTTAAC
104803008 CTAA-GTAAAA
1 CTAAGGTAAAA
104803018 TATAGAGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (28 bp):
CTAAGGTAAAAGAAATTTCCATTTTAAC
Found at i:104806203 original size:50 final size:51
Alignment explanation
Indices: 104806128--104806233 Score: 205
Period size: 50 Copynumber: 2.1 Consensus size: 51
104806118 TAACAGAATT
104806128 TAAAATAAATCAAAACGCAATAAAAGATACTAATCAACCAACAAAATAT-C
1 TAAAATAAATCAAAACGCAATAAAAGATACTAATCAACCAACAAAATATCC
104806178 TAAAATAAATCAAAACGCAATAAAAGATACTAATCAACCAACAAAATATCC
1 TAAAATAAATCAAAACGCAATAAAAGATACTAATCAACCAACAAAATATCC
104806229 TAAAA
1 TAAAA
104806234 ATAGATAATA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 49 0.89
51 6 0.11
ACGTcount: A:0.60, C:0.18, G:0.04, T:0.18
Consensus pattern (51 bp):
TAAAATAAATCAAAACGCAATAAAAGATACTAATCAACCAACAAAATATCC
Found at i:104806212 original size:24 final size:24
Alignment explanation
Indices: 104806135--104806214 Score: 74
Period size: 24 Copynumber: 3.2 Consensus size: 24
104806125 ATTTAAAATA
104806135 AATCAAAACGCAATAAAAGATACT
1 AATCAAAACGCAATAAAAGATACT
** * *
104806159 AATCAACCAACAAAATATCTAAAATA--
1 AATCAA--AACGCAATA--AAAGATACT
104806185 AATCAAAACGCAATAAAAGATACT
1 AATCAAAACGCAATAAAAGATACT
104806209 AATCAA
1 AATCAA
104806215 CCAACAAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
22 5 0.12
24 19 0.45
26 13 0.31
28 5 0.12
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.17
Consensus pattern (24 bp):
AATCAAAACGCAATAAAAGATACT
Found at i:104809192 original size:25 final size:23
Alignment explanation
Indices: 104809159--104809205 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
104809149 ACGCCATTTT
* *
104809159 TTTTTTATTTCTCTTCTATTTTCTC
1 TTTTGTATTT-TCTT-TAGTTTCTC
104809184 TTTTGTATTTTCTTTAGTTTCT
1 TTTTGTATTTTCTTTAGTTTCT
104809206 TCATGCTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 4 0.20
25 9 0.45
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTGTATTTTCTTTAGTTTCTC
Found at i:104809900 original size:11 final size:10
Alignment explanation
Indices: 104809884--104809918 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
104809874 GCTAATTTAG
104809884 ATATATAAAT
1 ATATATAAAT
104809894 CATATATAAAT
1 -ATATATAAAT
*
104809905 ATATATATAT
1 ATATATAAAT
104809915 ATAT
1 ATAT
104809919 CATATGCTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATAAAT
Found at i:104814977 original size:5 final size:6
Alignment explanation
Indices: 104814965--104814990 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
104814955 AATATAATTT
104814965 AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
104814991 AATTAATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:104818210 original size:34 final size:34
Alignment explanation
Indices: 104818167--104818234 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
104818157 TCAAATCTTA
104818167 GTATAAACTCAATTATCCTTTAACAATCATATAT
1 GTATAAACTCAATTATCCTTTAACAATCATATAT
104818201 GTATAAACTCAATTATCCTTTAACAATCATATAT
1 GTATAAACTCAATTATCCTTTAACAATCATATAT
104818235 AATTTTAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (34 bp):
GTATAAACTCAATTATCCTTTAACAATCATATAT
Found at i:104821842 original size:40 final size:39
Alignment explanation
Indices: 104821783--104821944 Score: 164
Period size: 40 Copynumber: 4.1 Consensus size: 39
104821773 GAATTTAGCT
* ** *
104821783 GGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGCCC
* *** *
104821823 GGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGCCC
104821863 GGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGCCC
* * *
104821903 GGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGCCC
104821943 GG
1 GG
104821945 GTATCATTCA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
GGATATAACAACTCGCACAATGCCTTCGGGTCTTAGCCC
Found at i:104825625 original size:15 final size:14
Alignment explanation
Indices: 104825599--104825671 Score: 67
Period size: 15 Copynumber: 5.0 Consensus size: 14
104825589 TATTCTAACA
*
104825599 CTATTATTATTTAT
1 CTATTTTTATTTAT
104825613 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
104825628 CTATTTATATTTCAA
1 CTATTTTTATTT-AT
104825643 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
*
104825658 CTATTTCTATTTAT
1 CTATTTTTATTTAT
104825672 ATACTATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
13 2 0.04
14 15 0.31
15 26 0.54
16 3 0.06
17 2 0.04
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:104825671 original size:18 final size:20
Alignment explanation
Indices: 104825627--104825673 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
104825617 TTTTTATTTA
104825627 TCTATTTATATTTCAACTAT
1 TCTATTTATATTTCAACTAT
*
104825647 T-TA-TTATATTTCTA-T-T
1 TCTATTTATATTTCAACTAT
104825663 TCTATTTATAT
1 TCTATTTATAT
104825674 ACTATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 2 0.08
17 3 0.12
18 16 0.67
19 2 0.08
20 1 0.04
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.62
Consensus pattern (20 bp):
TCTATTTATATTTCAACTAT
Found at i:104825845 original size:25 final size:25
Alignment explanation
Indices: 104825807--104825855 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
104825797 TTCATTTCAA
* *
104825807 ATTTTTATACATTATTTACTTTAAT
1 ATTTTCATACATTATGTACTTTAAT
* *
104825832 ATTTTCATATATTATGTATTTTAA
1 ATTTTCATACATTATGTACTTTAA
104825856 ACTTTTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTCATACATTATGTACTTTAAT
Found at i:104833925 original size:21 final size:21
Alignment explanation
Indices: 104833900--104833939 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
104833890 TGGGATAAAG
*
104833900 AAGATGATTTTCTGTCAAAAA
1 AAGATAATTTTCTGTCAAAAA
104833921 AAGATAATTTTCTGTCAAA
1 AAGATAATTTTCTGTCAAA
104833940 GATACTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
AAGATAATTTTCTGTCAAAAA
Found at i:104834467 original size:44 final size:44
Alignment explanation
Indices: 104834417--104834825 Score: 218
Period size: 44 Copynumber: 9.2 Consensus size: 44
104834407 TCCTATCTCT
*
104834417 CTAAGCAGCAGTGGAGTAGGTTGAAGACAGTAAGCCTTATCCCC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGACAGTAAGCCTTATCCCC
* * * * *
104834461 CTAAGCAGTAG-GGAAATAGGCTGAA-A-ATTACAGATCTTATCTCC
1 CTAAGCAGTAGTGG-AGTAGGTTGAAGACAGTA-AG-CCTTATCCCC
* *
104834505 CTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTTATCCCC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGACAGTAAGCCTTATCCCC
** * * * * *
104834549 CTAAGCAGTAG-GGAACAGGCT-AA-AAATGATAGACCACCCTATCTCC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGACA-G-TA-A--GCCTTATCCCC
* * *
104834595 CTAAGCAGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGACAGTAAGCCTTATCCCC
* * * * *
104834639 CTAAGCAGTAG-GGAAATAGGCTGAA-A-ATTACAGATCTTATCTCC
1 CTAAGCAGTAGTGG-AGTAGGTTGAAGACAGTA-AG-CCTTATCCCC
* * * * *
104834683 CTAAGCAGTAGTGGAGCAGATCGAAGAC-GATGAGCCTTATCCTC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGACAG-TAAGCCTTATCCCC
** * * **
104834727 CTAAGCAGTAG-GGAAACAGGCT--AGA-AGTTACAGATCTTATCTTC
1 CTAAGCAGTAGTGG-AGTAGGTTGAAGACAG-TA-AG-CCTTATCCCC
* * * *
104834771 CTAAGCAGTAGTGGAGTAGATCGAAGAGC-GTGAGCCTTATCTCC
1 CTAAGCAGTAGTGGAGTAGGTTGAAGA-CAGTAAGCCTTATCCCC
104834815 CTAAGCAGTAG
1 CTAAGCAGTAG
104834826 AGAAACAAGC
Statistics
Matches: 269, Mismatches: 66, Indels: 60
0.68 0.17 0.15
Matches are distributed among these distances:
41 1 0.00
42 12 0.04
43 22 0.08
44 181 0.67
45 14 0.05
46 26 0.10
47 9 0.03
48 3 0.01
49 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (44 bp):
CTAAGCAGTAGTGGAGTAGGTTGAAGACAGTAAGCCTTATCCCC
Found at i:104834538 original size:88 final size:88
Alignment explanation
Indices: 104834387--104834908 Score: 627
Period size: 88 Copynumber: 5.9 Consensus size: 88
104834377 CGTAACGAAT
* * * * * *
104834387 AGGCTGAAAATGACAGACTATCCTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGACAGTAAGC
1 AGGCTGAAAATTACAG---ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGC
*
104834452 CTTATCCCCCTAAGCAGTAGGGAAAT
63 CTTATCCCCCTAAGCAGTAGGGAAAC
104834478 AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTT
1 AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTT
104834543 ATCCCCCTAAGCAGTAGGG-AAC
66 ATCCCCCTAAGCAGTAGGGAAAC
* * * * * * * *
104834565 AGGCTAAAAATGATAGACCACCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGACGGTGAGC
1 AGGCTGAAAAT--TACA-GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGC
*
104834630 CTTATCCCCCTAAGCAGTAGGGAAAT
63 CTTATCCCCCTAAGCAGTAGGGAAAC
* * * *
104834656 AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTT
1 AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTT
*
104834721 ATCCTCCTAAGCAGTAGGGAAAC
66 ATCCCCCTAAGCAGTAGGGAAAC
* * * *
104834744 AGGCT-AGAAGTTACAGATCTTATCTTCCTAAGCAGTAGTGGAGTAGATCGAAGA-GCGTGAGCC
1 AGGCTGA-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACG-GTAAGCC
* *
104834807 TTATCTCCCTAAGCAGTAGAGAAAC
64 TTATCCCCCTAAGCAGTAGGGAAAC
* * * ** * * *
104834832 AAGCTGAAAATTACAGATCTTATATCCCTAAGTAGTAGTGGAACAGATTGCAGATGGTAATCCTT
1 AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTT
*
104834897 ATCTCCCTAAGC
66 ATCCCCCTAAGC
104834909 CTTATCTCCA
Statistics
Matches: 377, Mismatches: 46, Indels: 19
0.85 0.10 0.04
Matches are distributed among these distances:
87 14 0.04
88 265 0.70
89 8 0.02
90 63 0.17
91 27 0.07
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (88 bp):
AGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTAAGCCTT
ATCCCCCTAAGCAGTAGGGAAAC
Found at i:104834692 original size:178 final size:178
Alignment explanation
Indices: 104834387--104834908 Score: 701
Period size: 178 Copynumber: 2.9 Consensus size: 178
104834377 CGTAACGAAT
* * * * * *
104834387 AGGCTGAAAATGACAGACTATCCTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGACAGTAAGC
1 AGGCT-AAAATGATAGACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACGGTGAGC
104834452 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
65 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
*
104834517 GGAGTAGATTGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGGG-AAC
130 GGAGCAGATTGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGGGAAAC
* *
104834565 AGGCTAAAAATGATAGACCACCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGACGGTGAGC
1 AGGCT-AAAATGATAGACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACGGTGAGC
104834630 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
65 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* * * *
104834695 GGAGCAGATCGAAGACGATGAGCCTTATCCTCCTAAGCAGTAGGGAAAC
130 GGAGCAGATTGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGGGAAAC
* * * * * * * *
104834744 AGGCTAGAA-GTTACA-GATCTTATCTTCCTAAGCAGTAGTGGAGTAGATCGAAGA-GCGTGAGC
1 AGGCTAAAATGATAGACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACG-GTGAGC
* * * * * *
104834806 CTTATCTCCCTAAGCAGTAGAGAAACAAGCTGAAAATTACAGATCTTATATCCCTAAGTAGTAGT
65 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* * * * *
104834871 GGAACAGATTGCAGATGGTAATCCTTATCTCCCTAAGC
130 GGAGCAGATTGAAGACGGTAAGCCTTATCCCCCTAAGC
104834909 CTTATCTCCA
Statistics
Matches: 303, Mismatches: 39, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
175 1 0.00
176 126 0.42
177 4 0.01
178 164 0.54
179 8 0.03
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (178 bp):
AGGCTAAAATGATAGACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACGGTGAGCC
TTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATTGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGGGAAAC
Found at i:104834854 original size:44 final size:44
Alignment explanation
Indices: 104834630--104834874 Score: 130
Period size: 44 Copynumber: 5.5 Consensus size: 44
104834620 GACGGTGAGC
* * *
104834630 CTTATCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGAT
* * * ** * *
104834674 CTTATCTCCCTAAGCAGTAGTGG-AGC-AGATCGAAGACGA-TGAGC
1 CTTATCTCCCTAAGCAGTAG-GGAAACAAGCT-GAAAATTACAGA-T
* *
104834718 CTTATC-CTCCTAAGCAGTAGGGAAACAGGCT-AGAAGTTACAGAT
1 CTTATCTC-CCTAAGCAGTAGGGAAACAAGCTGA-AAATTACAGAT
* ** * * * * *
104834762 CTTATCTTCCTAAGCAGTAGTGG--AGTAGATCGAAGA--GCGTGAGC
1 CTTATCTCCCTAAGCAGTAG-GGAAACAAGCT-GAAAATTAC-AGA-T
*
104834806 CTTATCTCCCTAAGCAGTAGAGAAACAAGCTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGAT
* *
104834850 CTTATATCCCTAAGTAGTAGTGGAA
1 CTTATCTCCCTAAGCAGTAG-GGAA
104834875 CAGATTGCAG
Statistics
Matches: 141, Mismatches: 41, Indels: 37
0.64 0.19 0.17
Matches are distributed among these distances:
42 1 0.01
43 14 0.10
44 107 0.76
45 18 0.13
46 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGAT
Found at i:104837190 original size:105 final size:101
Alignment explanation
Indices: 104837081--104837274 Score: 246
Period size: 105 Copynumber: 1.9 Consensus size: 101
104837071 TACACTCGTA
* * **
104837081 ATGCCATAACCTAGTTATGGTCTTATCA-TCAGGATGTCATAGCCCAGCTATGGTCTTACACTTA
1 ATGCCATAACCCAGTTATGATCTTATCACT-AAAATGTCATAGCCCAGCTATGGTCTTACA-TT-
104837145 TACATACACTACCATGGTCCAACCATGGTTTTACAATCACG
63 TA-A-ACACTACCATGGTCCAACCATGGTTTTACAATCACG
* * *
104837186 ATGCCATAACCCAGTTATGATCTTTTCACTAAAATGTCATTGCCCAGTTATGGTCTTACATTTAA
1 ATGCCATAACCCAGTTATGATCTTATCACTAAAATGTCATAGCCCAGCTATGGTCTTACATTTAA
* * *
104837251 ATATTGCCATGGTCCAACCATGGT
66 ACACTACCATGGTCCAACCATGGT
104837275 CTTATCCATC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
101 21 0.27
102 1 0.01
103 2 0.03
104 2 0.03
105 51 0.65
106 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
ATGCCATAACCCAGTTATGATCTTATCACTAAAATGTCATAGCCCAGCTATGGTCTTACATTTAA
ACACTACCATGGTCCAACCATGGTTTTACAATCACG
Found at i:104838270 original size:36 final size:36
Alignment explanation
Indices: 104838223--104838295 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
104838213 CTCCTCCAGC
104838223 AAGCAAATAAACATAACTTGATATGGATTTCATGCT
1 AAGCAAATAAACATAACTTGATATGGATTTCATGCT
*
104838259 AAGCAGATAAACATAACTTGATATGGATTTCATGCT
1 AAGCAAATAAACATAACTTGATATGGATTTCATGCT
104838295 A
1 A
104838296 TCTTGGCATC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (36 bp):
AAGCAAATAAACATAACTTGATATGGATTTCATGCT
Found at i:104840910 original size:2 final size:2
Alignment explanation
Indices: 104840903--104840932 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
104840893 ACCAAGTTAT
104840903 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
104840933 AACATACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:104847723 original size:27 final size:27
Alignment explanation
Indices: 104847665--104847727 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
104847655 CATTATCGAG
* * *
104847665 GGGACCCGACATGAACCCTCTCTCGAT
1 GGGACCCGACATAAACCCTCTCTCCAA
* *
104847692 CGGACCCGACATAAACCCTCTTTCCAA
1 GGGACCCGACATAAACCCTCTCTCCAA
104847719 GGGACCCGA
1 GGGACCCGA
104847728 ACCTGAAACT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.38, G:0.21, T:0.16
Consensus pattern (27 bp):
GGGACCCGACATAAACCCTCTCTCCAA
Found at i:104852634 original size:12 final size:12
Alignment explanation
Indices: 104852617--104852642 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
104852607 AGTTGTTTAG
104852617 AAATATTATGTT
1 AAATATTATGTT
104852629 AAATATTATGTT
1 AAATATTATGTT
104852641 AA
1 AA
104852643 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (12 bp):
AAATATTATGTT
Found at i:104857020 original size:22 final size:22
Alignment explanation
Indices: 104856995--104857040 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
104856985 TAGCCGGCGG
104856995 TCCCCCTTTCTCCCTTCTCCTC
1 TCCCCCTTTCTCCCTTCTCCTC
** *
104857017 TCCCTTTTTCTCTCTTCTCCTC
1 TCCCCCTTTCTCCCTTCTCCTC
104857039 TC
1 TC
104857041 TCTTTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (22 bp):
TCCCCCTTTCTCCCTTCTCCTC
Found at i:104857058 original size:22 final size:22
Alignment explanation
Indices: 104857001--104857047 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
104856991 GCGGTCCCCC
*
104857001 TTTCTCCCTTCTCCTCTCCCTT
1 TTTCTCTCTTCTCCTCTCCCTT
*
104857023 TTTCTCTCTTCTCCTCTCTCTT
1 TTTCTCTCTTCTCCTCTCCCTT
104857045 TTT
1 TTT
104857048 TTTCTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTCTCTCTTCTCCTCTCCCTT
Found at i:104857520 original size:3 final size:3
Alignment explanation
Indices: 104857512--104857578 Score: 116
Period size: 3 Copynumber: 22.0 Consensus size: 3
104857502 TGTATTTTCA
104857512 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
104857560 TAT TAT ATAT TTT TAT TAT
1 TAT TAT -TAT TAT TAT TAT
104857579 ATACATATAC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 58 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:104870465 original size:74 final size:71
Alignment explanation
Indices: 104870263--104870684 Score: 409
Period size: 70 Copynumber: 5.9 Consensus size: 71
104870253 TTTGGGTACT
* * ** ** *
104870263 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAATTCATATTGCGAGAAATGAGTTAAGCCTCA
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
104870328 GGTCACACG
65 GG--ACACG
* ** **
104870337 CTGAGGTATTTTTATTTTATGTTTCAAAAATTTTGACTCATATTGCGAGAGGTGAGTCAAGCCTC
1 CTGAGGTATTTTTAATTTATGTTTCAAAAA-TCAG-CTCATATTGCGAGAGGTGAGTTGAGCCTC
*
104870402 AGGTCACG
64 AGGACACG
* *
104870410 CTGAGGTGTTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATT--T-ATGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
*
104870475 CAAGACACG
63 CAGGACACG
* * * * *
104870484 TTGAGGTAATTTCAATTTATG-TTCCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
104870548 GACACG
66 GACACG
* * * * * * *
104870554 TTGAGGTAATTTCAATTTATG-TTCCAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
104870618 GGCACG
66 GACACG
* * ** * * * * *
104870624 CTAAGGTATTTTTAGTTTATGTTAGAAAATTGA-CTCATCTTGCGAAAGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
104870685 TTTAACTTCT
Statistics
Matches: 297, Mismatches: 45, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
70 153 0.52
71 8 0.03
72 1 0.00
73 28 0.09
74 65 0.22
75 31 0.10
76 11 0.04
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (71 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GACACG
Found at i:104871074 original size:13 final size:13
Alignment explanation
Indices: 104871053--104871088 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
104871043 GAGCTGAGTC
104871053 TTTTTAATTTCTA
1 TTTTTAATTTCTA
* *
104871066 TTTTCAATTTCTG
1 TTTTTAATTTCTA
104871079 TTTTTAATTT
1 TTTTTAATTT
104871089 TTCAAAGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTA
Found at i:104871213 original size:13 final size:13
Alignment explanation
Indices: 104871195--104871219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104871185 TGAGTTGAGC
104871195 CTTTTAATTTCTG
1 CTTTTAATTTCTG
104871208 CTTTTAATTTCT
1 CTTTTAATTTCT
104871220 ATGTTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.04, T:0.64
Consensus pattern (13 bp):
CTTTTAATTTCTG
Found at i:104871227 original size:68 final size:68
Alignment explanation
Indices: 104871087--104871263 Score: 193
Period size: 67 Copynumber: 2.6 Consensus size: 68
104871077 TGTTTTTAAT
* * *
104871087 TTTTCAAAGATCAACTCATATCGCGAGAGGTGAGTTGAGCC-TTTAATTTCCGTTCTTTGAAATC
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCCGTGCTTTGAAATC
104871151 TAC
66 TAC
* * * * *
104871154 TTTTCAAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAATTT-C-TGCTTTTAATT
1 TTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCCGTGCTTTGAA-A
104871217 TCTA-
64 TCTAC
* *
104871221 TGTTTCAAAAATCAACCCATATTGCGAG-GAATGAGTTGAGCCT
1 T-TTTCAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCT
104871264 CAGTTCACTT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
66 1 0.01
67 43 0.46
68 41 0.44
69 8 0.09
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (68 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCCGTGCTTTGAAATC
TAC
Found at i:104872208 original size:13 final size:15
Alignment explanation
Indices: 104872180--104872211 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
104872170 TAACTATACG
104872180 AAAATATAATACAAA
1 AAAATATAATACAAA
104872195 AAAATATAA-A-AAA
1 AAAATATAATACAAA
104872208 AAAA
1 AAAA
104872212 GAAAAAATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 1 0.06
15 9 0.53
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAATATAATACAAA
Found at i:104872807 original size:3 final size:3
Alignment explanation
Indices: 104872799--104872876 Score: 156
Period size: 3 Copynumber: 26.0 Consensus size: 3
104872789 TGTATTTTCA
104872799 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
104872847 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
104872877 ATGCATATAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:104875782 original size:10 final size:10
Alignment explanation
Indices: 104875767--104875795 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
104875757 AATGTACCTA
104875767 AAAAGTTCTC
1 AAAAGTTCTC
104875777 AAAAGTTCTC
1 AAAAGTTCTC
104875787 AAAAGTTCT
1 AAAAGTTCT
104875796 TTATGTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (10 bp):
AAAAGTTCTC
Found at i:104876735 original size:24 final size:22
Alignment explanation
Indices: 104876708--104876752 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
104876698 ATATAATTTT
104876708 TTATAATTATACATTTAAAAATAA
1 TTATAATT-TA-ATTTAAAAATAA
*
104876732 TTATAATTTAATTTACAAATA
1 TTATAATTTAATTTAAAAATA
104876753 TTACTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 2 0.10
24 8 0.40
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
TTATAATTTAATTTAAAAATAA
Found at i:104876892 original size:21 final size:22
Alignment explanation
Indices: 104876854--104876911 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
104876844 TTTAAAACAA
104876854 ATATT-TTTATTTTTACAT-TT
1 ATATTATTTATTTTTACATATT
104876874 ATATTATTT-TTTATTACATATT
1 ATATTATTTATTT-TTACATATT
*
104876896 A-ATTATATATTATTTA
1 ATATTATTTATT-TTTA
104876912 AAAGTTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
20 8 0.25
21 15 0.47
22 8 0.25
23 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATTATTTATTTTTACATATT
Found at i:104886463 original size:22 final size:22
Alignment explanation
Indices: 104886421--104886463 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
104886411 AATATAATAG
* *
104886421 CAAAATGACAGCGAAATAACAA
1 CAAAATGACAGCAAAAAAACAA
*
104886443 CAAAATGGCAGCAAAAAAACA
1 CAAAATGACAGCAAAAAAACA
104886464 GCCGGAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.19, G:0.14, T:0.07
Consensus pattern (22 bp):
CAAAATGACAGCAAAAAAACAA
Found at i:104893537 original size:179 final size:176
Alignment explanation
Indices: 104893206--104893561 Score: 577
Period size: 179 Copynumber: 2.0 Consensus size: 176
104893196 ACATGTCATC
*
104893206 ATCATGTGAGGCCAAATAAAGGCCAAAAAACTTATTATTTCAAAAGATCATGTCTTGTCTTGCCA
1 ATCATGTGAGGCCAAATAAAGGCAAAAAAACTTATTATTTCAAAAGATCATGTCTTGTCTTGCCA
* * * * * *
104893271 AAATAAATAACCAATTGCTAGTAAAAAAGAAGCTCTAGAGCATAACCAATGATATGGGTGACAAA
66 AAAAAAAAAAACAATTGCTAGCAAAAAAGAAGCTCTAGAGCATAAACAACGATATGGGTGACAAA
104893336 TGACTACTCAACGATAAAACCACCGGCTACCATTAACAATCTAAAA
131 TGACTACTCAACGATAAAACCACCGGCTACCATTAACAATCTAAAA
* *
104893382 ATCATGTGAGGCCAAATAAAGGCAAAAAAACTTATTATTTTAAAAGATCTTGTCTTGTCTTGCCA
1 ATCATGTGAGGCCAAATAAAGGCAAAAAAACTTATTATTTCAAAAGATCATGTCTTGTCTTGCC-
*
104893447 AAAAAAAAAAAAAACAATTGCTAGCAAAAGAGAAGCTCTAGAGCATAAACAACGATATGGGTGAC
65 --AAAAAAAAAAAACAATTGCTAGCAAAAAAGAAGCTCTAGAGCATAAACAACGATATGGGTGAC
* *
104893512 GAATGACTACTCAACGATAAAACCACTGGCTACCATTAACAATCTAAAA
128 AAATGACTACTCAACGATAAAACCACCGGCTACCATTAACAATCTAAAA
104893561 A
1 A
104893562 AGCTCTAGAG
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
176 61 0.37
179 104 0.63
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (176 bp):
ATCATGTGAGGCCAAATAAAGGCAAAAAAACTTATTATTTCAAAAGATCATGTCTTGTCTTGCCA
AAAAAAAAAAACAATTGCTAGCAAAAAAGAAGCTCTAGAGCATAAACAACGATATGGGTGACAAA
TGACTACTCAACGATAAAACCACCGGCTACCATTAACAATCTAAAA
Found at i:104897117 original size:30 final size:31
Alignment explanation
Indices: 104897093--104897151 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
104897083 GTAAATACTC
* * *
104897093 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
104897123 AAAAGTTGAAGGACTAATAGTGTAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
104897152 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:104897389 original size:15 final size:16
Alignment explanation
Indices: 104897351--104897396 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
104897341 ATGTTGGTGA
104897351 TATTT-TATAATTATT
1 TATTTATATAATTATT
*
104897366 TAATTATATAATTA-T
1 TATTTATATAATTATT
104897381 TATTTATATAA-TATT
1 TATTTATATAATTATT
104897396 T
1 T
104897397 TAATAAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 2 0.07
15 17 0.63
16 8 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTATATAATTATT
Found at i:104897392 original size:31 final size:30
Alignment explanation
Indices: 104897351--104897426 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
104897341 ATGTTGGTGA
* *
104897351 TATTTTATAAT-TATTTAATTATATAATTAT
1 TATTTTATAATAT-TTTAATAAGATAATTAT
*
104897381 TATTTATATAATATTTTAATAAGATATTTAT
1 TATTT-TATAATATTTTAATAAGATAATTAT
104897412 TATTTTAT--TATTTTA
1 TATTTTATAATATTTTA
104897427 TTTAGTCTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 7 0.17
30 8 0.20
31 25 0.61
32 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (30 bp):
TATTTTATAATATTTTAATAAGATAATTAT
Found at i:104900730 original size:16 final size:15
Alignment explanation
Indices: 104900707--104900742 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
104900697 TGATATAATG
104900707 AAATATA-AAAATTA
1 AAATATATAAAATTA
*
104900721 AATTATATAAAATTA
1 AAATATATAAAATTA
104900736 AAATATA
1 AAATATA
104900743 GAGAATAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATATATAAAATTA
Found at i:104912154 original size:39 final size:40
Alignment explanation
Indices: 104912099--104912176 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 40
104912089 TCAAATACAT
104912099 TTAAAACAAATATTAAAACAAAAAACAAA-TAAAAATATA
1 TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATATA
* * * * *
104912138 TTAAAACAATTTTTAAAACAATACACAAATTGAAAATAT
1 TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATAT
104912177 TATAAAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 25 0.76
40 8 0.24
ACGTcount: A:0.64, C:0.09, G:0.01, T:0.26
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATATA
Found at i:104912226 original size:29 final size:27
Alignment explanation
Indices: 104912181--104912234 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
104912171 AAATATTATA
* *
104912181 AAAATTAATTATATTAAAATTAAAATT
1 AAAATTAAATATATTAAAAATAAAATT
104912208 AAAATATAAATATGATTAAAAATAAAA
1 AAAAT-TAAATAT-ATTAAAAATAAAA
104912235 ATATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 6 0.26
29 12 0.52
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATTAAATATATTAAAAATAAAATT
Found at i:104912575 original size:17 final size:18
Alignment explanation
Indices: 104912533--104912581 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
104912523 TATTTTTTAT
104912533 AAAAATATTAAAAAATCA
1 AAAAATATTAAAAAATCA
104912551 AAATAATATTAAAAAAT-A
1 AAA-AATATTAAAAAATCA
104912569 AAAAATATATAAA
1 AAAAATAT-TAAA
104912582 CTTGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.17
18 11 0.38
19 13 0.45
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAATATTAAAAAATCA
Found at i:104912590 original size:26 final size:26
Alignment explanation
Indices: 104912561--104912610 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
104912551 AAATAATATT
*
104912561 AAAAAATAAAAAATATATAAACTTGA
1 AAAAAATAAAAAATATAAAAACTTGA
* * *
104912587 AAAAATTATAAAATTTAAAAACTT
1 AAAAAATAAAAAATATAAAAACTT
104912611 ATCAATATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (26 bp):
AAAAAATAAAAAATATAAAAACTTGA
Found at i:104912708 original size:18 final size:18
Alignment explanation
Indices: 104912567--104912755 Score: 59
Period size: 17 Copynumber: 10.3 Consensus size: 18
104912557 TATTAAAAAA
*
104912567 TAAAAAATATATAAACT-T
1 TAAAAAAT-TATAAAATAT
*
104912585 GAAAAAATTATAAAAT-T
1 TAAAAAATTATAAAATAT
* *
104912602 TAAAAACTTAT-CAATAT
1 TAAAAAATTATAAAATAT
* * *
104912619 TATTAAAA-TATATAATTTT
1 TA-AAAAATTATA-AAATAT
* *
104912638 TATAAAATTAATAAAGTATTTT
1 TAAAAAATT-ATAAA--A-TAT
* *
104912660 TAAAATATT-TAAAATTT
1 TAAAAAATTATAAAATAT
**
104912677 TATTAAAACGTATAAAATAT
1 TA--AAAAATTATAAAATAT
*
104912697 TAAAAAATTATAAAA-AC
1 TAAAAAATTATAAAATAT
* * *
104912714 CATAAAA-TATTAAAATTT
1 TAAAAAATTA-TAAAATAT
* *
104912732 TATAAAAGTATAAAAATAT
1 TAAAAAATTAT-AAAATAT
104912751 TAAAA
1 TAAAA
104912756 TCATAAAAAA
Statistics
Matches: 128, Mismatches: 27, Indels: 31
0.69 0.15 0.17
Matches are distributed among these distances:
16 5 0.04
17 39 0.30
18 34 0.27
19 24 0.19
20 16 0.12
22 10 0.08
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (18 bp):
TAAAAAATTATAAAATAT
Found at i:104912718 original size:27 final size:26
Alignment explanation
Indices: 104912660--104912756 Score: 113
Period size: 27 Copynumber: 3.5 Consensus size: 26
104912650 AAAGTATTTT
104912660 TAAAATATTTAAAATTTTATTAAAACGTA
1 TAAAATA-TTAAAATTTTA-TAAAAC-TA
** *
104912689 TAAAATATTAAAAAATTATAAAAACCA
1 TAAAATATTAAAATTTTAT-AAAACTA
*
104912716 TAAAATATTAAAATTTTATAAAAGTA
1 TAAAATATTAAAATTTTATAAAACTA
104912742 TAAAAATATTAAAAT
1 T-AAAATATTAAAAT
104912757 CATAAAAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.10
27 32 0.54
28 14 0.24
29 7 0.12
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (26 bp):
TAAAATATTAAAATTTTATAAAACTA
Found at i:104912801 original size:8 final size:8
Alignment explanation
Indices: 104912732--104912804 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
104912722 ATTAAAATTT
*
104912732 TATAAAAG
1 TATAAAAA
104912740 TATAAAAA
1 TATAAAAA
*
104912748 TATTAAAA
1 TATAAAAA
104912756 TCATAAAAA
1 T-ATAAAAA
**
104912765 -ATAATTA
1 TATAAAAA
104912772 T-TAAAAA
1 TATAAAAA
104912779 TATTAAAATTGA
1 TA-TAAAA---A
104912791 TATAAAAA
1 TATAAAAA
104912799 TATAAA
1 TATAAA
104912805 TAAAAAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
7 10 0.20
8 22 0.43
9 11 0.22
11 5 0.10
12 3 0.06
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (8 bp):
TATAAAAA
Found at i:104912977 original size:34 final size:34
Alignment explanation
Indices: 104912892--104913044 Score: 166
Period size: 34 Copynumber: 4.5 Consensus size: 34
104912882 AATTCACATA
* *
104912892 CTATATAACATGGGTGTTCGCATATTATGTCATT
1 CTATATAACATGGGGGTTCGCATACTATGTCATT
** * * *
104912926 GAATAGAACATGAGGGTTTGCATACTATGTCATT
1 CTATATAACATGGGGGTTCGCATACTATGTCATT
* *
104912960 CTATATAACGTGGGGGTTCGCATTCTATGTCATAT
1 CTATATAACATGGGGGTTCGCATACTATGTCAT-T
* * *
104912995 -TATATAACA-CGGGATTCACATACTATGTCATT
1 CTATATAACATGGGGGTTCGCATACTATGTCATT
*
104913027 CTATATAACATGAGGGTT
1 CTATATAACATGGGGGTT
104913045 GGGTTCGCAT
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
32 1 0.01
33 27 0.29
34 65 0.69
35 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (34 bp):
CTATATAACATGGGGGTTCGCATACTATGTCATT
Found at i:104913032 original size:33 final size:33
Alignment explanation
Indices: 104912946--104913036 Score: 112
Period size: 33 Copynumber: 2.7 Consensus size: 33
104912936 TGAGGGTTTG
** * *
104912946 CATACTATGTCATTCTATATAACGTGGGGGTTCG
1 CATACTATGTCATTCTATATAAC-ACGGGATTCA
*
104912980 CATTCTATGTCATAT-TATATAACACGGGATTCA
1 CATACTATGTCAT-TCTATATAACACGGGATTCA
104913013 CATACTATGTCATTCTATATAACA
1 CATACTATGTCATTCTATATAACA
104913037 TGAGGGTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
32 1 0.02
33 27 0.55
34 20 0.41
35 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (33 bp):
CATACTATGTCATTCTATATAACACGGGATTCA
Found at i:104913683 original size:22 final size:22
Alignment explanation
Indices: 104913658--104913701 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
104913648 TAGTCAGATA
104913658 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
104913680 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
104913702 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:104913746 original size:16 final size:16
Alignment explanation
Indices: 104913724--104913760 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
104913714 CAATTTTATT
104913724 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
104913741 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
104913756 TAATA
1 TAATA
104913761 TTATTCACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:104914293 original size:14 final size:14
Alignment explanation
Indices: 104914257--104914295 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
104914247 CAGAAAATAT
*
104914257 AAATTATTTTCCAG
1 AAATAATTTTCCAG
*
104914271 AAATCATTTTCCAG
1 AAATAATTTTCCAG
*
104914285 AAGTAATTTTC
1 AAATAATTTTC
104914296 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATAATTTTCCAG
Found at i:104915156 original size:16 final size:16
Alignment explanation
Indices: 104915135--104915232 Score: 51
Period size: 16 Copynumber: 6.1 Consensus size: 16
104915125 TATTATTTTC
104915135 AATATATAAA-ATATAA
1 AATATA-AAATATATAA
*
104915151 AATATAGAAT-TATAAA
1 AATATAAAATATAT-AA
*
104915167 AATATAAAAATACATACA
1 AATAT-AAAATATATA-A
*
104915185 AATA-AAAATTATAAAA
1 AATATAAAA-TATATAA
* ** *
104915201 AATGTTTAATAT-TAT
1 AATATAAAATATATAA
*
104915216 AATATATAATATATAA
1 AATATAAAATATATAA
104915232 A
1 A
104915233 TTAAAAAAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
15 16 0.26
16 27 0.44
17 11 0.18
18 7 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (16 bp):
AATATAAAATATATAA
Found at i:104915267 original size:27 final size:27
Alignment explanation
Indices: 104915237--104915297 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
104915227 TATAAATTAA
*
104915237 AAAAGTAAAAAAAAATTAAAAAGTTAT
1 AAAAGTAAAAAAAAATTAAAAACTTAT
*
104915264 AAAAGTTAAAAAAAATTAAAAACTTAT
1 AAAAGTAAAAAAAAATTAAAAACTTAT
104915291 AAAAGTA
1 AAAAGTA
104915298 TATACAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.23
Consensus pattern (27 bp):
AAAAGTAAAAAAAAATTAAAAACTTAT
Found at i:104915285 original size:18 final size:20
Alignment explanation
Indices: 104915230--104915267 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
104915220 TATAATATAT
104915230 AAATTAAAAAAGTAA-AAAA
1 AAATTAAAAAAGTAATAAAA
*
104915249 AAATT-AAAAAGTTATAAAA
1 AAATTAAAAAAGTAATAAAA
104915268 GTTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATTAAAAAAGTAATAAAA
Found at i:104918947 original size:24 final size:24
Alignment explanation
Indices: 104918920--104918969 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
104918910 AAACTTTTTA
* *
104918920 TATTTTTTATTAATTTATATATTT
1 TATTTTTAATTAATATATATATTT
*
104918944 TATTTTTAATTTATATATATATTT
1 TATTTTTAATTAATATATATATTT
104918968 TA
1 TA
104918970 ATTTCAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (24 bp):
TATTTTTAATTAATATATATATTT
Found at i:104918954 original size:20 final size:20
Alignment explanation
Indices: 104918918--104918973 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
104918908 AAAAACTTTT
*
104918918 TATATTTT-TTATTAATTTA
1 TATATTTTATTTTTAATTTA
104918937 TATATTTTATTTTTAATTTA
1 TATATTTTATTTTTAATTTA
*
104918957 TATA-TATA-TTTTAATTT
1 TATATTTTATTTTTAATTT
104918974 CAAAATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 9 0.26
19 11 0.32
20 14 0.41
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TATATTTTATTTTTAATTTA
Found at i:104918958 original size:18 final size:18
Alignment explanation
Indices: 104918916--104918973 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
104918906 ATAAAAACTT
*
104918916 TTTATATTTT-TTATTAA
1 TTTATATTTTATTTTTAA
104918933 TTTATATATTTTATTTTTAA
1 -TT-TATATTTTATTTTTAA
*
104918953 TTTATA-TATATATTTTAA
1 TTTATATTTTAT-TTTTAA
104918971 TTT
1 TTT
104918974 CAAAATAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.11
18 15 0.43
19 10 0.29
20 6 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATATTTTATTTTTAA
Found at i:104927887 original size:24 final size:28
Alignment explanation
Indices: 104927835--104927890 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
104927825 CAATTATCAC
104927835 TTTGGTACTTAAATAATTTTTTGCAATAA
1 TTTGGTACTTAAATAA-TTTTTGCAATAA
104927864 TTTGGTACTT-AA-AA-TTTT-CAATAA
1 TTTGGTACTTAAATAATTTTTGCAATAA
104927888 TTT
1 TTT
104927891 TTTGCAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 9 0.33
25 4 0.15
27 2 0.07
28 2 0.07
29 10 0.37
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (28 bp):
TTTGGTACTTAAATAATTTTTGCAATAA
Found at i:104927896 original size:37 final size:37
Alignment explanation
Indices: 104927846--104927923 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
104927836 TTGGTACTTA
104927846 AATAATTTTTTGCAATAATTTGGTACTTAAAATTTTC
1 AATAATTTTTTGCAATAATTTGGTACTTAAAATTTTC
*
104927883 AATAATTTTTTGCAATAGTTTGGTACTTAAAATTTTC
1 AATAATTTTTTGCAATAATTTGGTACTTAAAATTTTC
104927920 AATA
1 AATA
104927924 GTATATCACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (37 bp):
AATAATTTTTTGCAATAATTTGGTACTTAAAATTTTC
Found at i:104928119 original size:21 final size:21
Alignment explanation
Indices: 104928094--104928137 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
104928084 ATATATAAAA
104928094 GAAAGAGCGAAAATACCAAAG
1 GAAAGAGCGAAAATACCAAAG
104928115 GAAAGAGCGAAAATACCAAAG
1 GAAAGAGCGAAAATACCAAAG
104928136 GA
1 GA
104928138 CAATGCAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.14, G:0.25, T:0.05
Consensus pattern (21 bp):
GAAAGAGCGAAAATACCAAAG
Found at i:104928247 original size:2 final size:2
Alignment explanation
Indices: 104928236--104928273 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
104928226 AAATTGTTCT
104928236 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
104928274 TAATTCACCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:104929712 original size:2 final size:2
Alignment explanation
Indices: 104929707--104929736 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
104929697 AAATTTGAGA
104929707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104929737 TTCAAACCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104929902 original size:17 final size:18
Alignment explanation
Indices: 104929865--104929919 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
104929855 AATTTAACAT
*
104929865 TTTTATATAATATTTAGAA
1 TTTTATATAATATTT-TAA
104929884 TTTTATATAAT-TTTTAA
1 TTTTATATAATATTTTAA
*
104929901 TTTTTTATAGATATTTTAA
1 TTTTATATA-ATATTTTAA
104929920 AATTTTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 10 0.31
18 5 0.16
19 17 0.53
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTATATAATATTTTAA
Found at i:104929904 original size:37 final size:38
Alignment explanation
Indices: 104929845--104929925 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 38
104929835 GGAAAAAAAT
* *
104929845 AATTTTTTATAATTTAACATTTTTATATA-ATA-TTTAG
1 AATTTTATATAATTTAACATTTTT-TATAGATATTTTAA
*
104929882 AATTTTATATAATTTTTA-ATTTTTTATAGATATTTTAA
1 AATTTTATATAA-TTTAACATTTTTTATAGATATTTTAA
104929920 AATTTT
1 AATTTT
104929926 GAAGATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
36 4 0.11
37 20 0.53
38 14 0.37
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.59
Consensus pattern (38 bp):
AATTTTATATAATTTAACATTTTTTATAGATATTTTAA
Found at i:104929917 original size:19 final size:18
Alignment explanation
Indices: 104929844--104929919 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 18
104929834 TGGAAAAAAA
104929844 TAATTTTTTAT-A-ATTT
1 TAATTTTTTATAATATTT
*
104929860 AACATTTTTATATAATATTT
1 TA-ATTTTT-TATAATATTT
* *
104929880 AGAATTTTATATAAT-TTT
1 -TAATTTTTTATAATATTT
104929898 TAATTTTTTATAGATATTT
1 TAATTTTTTATA-ATATTT
104929917 TAA
1 TAA
104929920 AATTTTGAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
16 1 0.02
17 16 0.33
18 8 0.17
19 13 0.27
20 9 0.19
21 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (18 bp):
TAATTTTTTATAATATTT
Found at i:104937616 original size:21 final size:19
Alignment explanation
Indices: 104937560--104937620 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
104937550 TAATTATTTA
104937560 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
104937579 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
104937598 TTAAATATAATAATTAAATAT
1 TTAAAT-T-ATAATTAAATAT
104937619 TT
1 TT
104937621 GTAATTAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 6 0.17
21 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:104940789 original size:2 final size:2
Alignment explanation
Indices: 104940771--104940805 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
104940761 CCGTGCTACA
* *
104940771 CT CT GT CT CT CT TT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
104940806 AGTTTAGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (2 bp):
CT
Found at i:104941496 original size:166 final size:166
Alignment explanation
Indices: 104941222--104941558 Score: 638
Period size: 166 Copynumber: 2.0 Consensus size: 166
104941212 AGTACATTTG
* *
104941222 GGGTGGTGCCGCCTATTGCAGAGGCATGACCACCCCATGTCAGATTAAAAATTACTGTAGCTGTC
1 GGGTGGTGCCGCCTATGGCAGAGGCATGACCACCCCATGTCAGATCAAAAATTACTGTAGCTGTC
104941287 GGTCAAATTGCGGCGCAAGACTAAAATGTAATAATATAAAATATTTAGAGACCTGTTATGAAATT
66 GGTCAAATTGCGGCGCAAGACTAAAATGTAATAATATAAAATATTTAGAGACCTGTTATGAAATT
104941352 ATACCATTTAGAATGACTGCTGAGAAAAAAGTGAAA
131 ATACCATTTAGAATGACTGCTGAGAAAAAAGTGAAA
104941388 GGGTGGTGCCGCCTATGGCAGAGGCATGACCACCCCATGTCAGATCAAAAATTACTGTAGCTGTC
1 GGGTGGTGCCGCCTATGGCAGAGGCATGACCACCCCATGTCAGATCAAAAATTACTGTAGCTGTC
*
104941453 GGTCAAATTGCGGCGCAAGACTAAAATGTAATAATATAAAATATTTAGGGACCTGTTATGAAATT
66 GGTCAAATTGCGGCGCAAGACTAAAATGTAATAATATAAAATATTTAGAGACCTGTTATGAAATT
*
104941518 ATACCATTTAGAATGGCTGCTGAGAAAAAAGTGAAA
131 ATACCATTTAGAATGACTGCTGAGAAAAAAGTGAAA
104941554 GGGTG
1 GGGTG
104941559 CCGCCTTACA
Statistics
Matches: 167, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 167 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (166 bp):
GGGTGGTGCCGCCTATGGCAGAGGCATGACCACCCCATGTCAGATCAAAAATTACTGTAGCTGTC
GGTCAAATTGCGGCGCAAGACTAAAATGTAATAATATAAAATATTTAGAGACCTGTTATGAAATT
ATACCATTTAGAATGACTGCTGAGAAAAAAGTGAAA
Found at i:104941946 original size:28 final size:27
Alignment explanation
Indices: 104941892--104941943 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
104941882 AAACTATAAA
104941892 TTAAGGGCTTATTTAACTAAAAAATAGG
1 TTAAGGGCTTATTTAAC-AAAAAATAGG
* *
104941920 TTAAGGGCTTGTTTAA-AAATAATA
1 TTAAGGGCTTATTTAACAAAAAATA
104941944 TAGTGAGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (27 bp):
TTAAGGGCTTATTTAACAAAAAATAGG
Found at i:104943049 original size:42 final size:42
Alignment explanation
Indices: 104943001--104943085 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
104942991 TAAAATAAAG
* *
104943001 ATTTTGTTGCGTTATTGCAACTCTTTCCTTAAATAAATCTTA
1 ATTTTGTTGCATTATAGCAACTCTTTCCTTAAATAAATCTTA
*** *
104943043 ATTTTGTTGCATTATAGCTGTTCTTTCCTTGAATAAATCTTA
1 ATTTTGTTGCATTATAGCAACTCTTTCCTTAAATAAATCTTA
104943085 A
1 A
104943086 GCTCTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (42 bp):
ATTTTGTTGCATTATAGCAACTCTTTCCTTAAATAAATCTTA
Found at i:104945252 original size:11 final size:11
Alignment explanation
Indices: 104945238--104945278 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
104945228 TATTTTCTCC
104945238 CTATTTTACTA
1 CTATTTTACTA
104945249 CTATTTTACTA
1 CTATTTTACTA
* * *
104945260 TTATGTTGCTA
1 CTATTTTACTA
104945271 CTATTTTA
1 CTATTTTA
104945279 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:104945450 original size:18 final size:18
Alignment explanation
Indices: 104945427--104945466 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
104945417 GAAATATTTA
*
104945427 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
104945445 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
104945463 TTTT
1 TTTT
104945467 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:104945498 original size:12 final size:12
Alignment explanation
Indices: 104945468--104945501 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
104945458 TATATTTTTT
104945468 AAAATT-ATATA
1 AAAATTAATATA
104945479 AAAA-TAATATA
1 AAAATTAATATA
104945490 AAAATTAATATA
1 AAAATTAATATA
104945502 GACGGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.62
12 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:104948116 original size:125 final size:127
Alignment explanation
Indices: 104947987--104948218 Score: 281
Period size: 132 Copynumber: 1.8 Consensus size: 127
104947977 AATACGAAAC
* * * * *
104947987 ATTGCCTCATTTTAA-TTT-GAGAAAACGTGGATGAAATTTCAAAAGGATATTCTGTATTTTAGT
1 ATTGCCTCATTTTAATTTTAAAAAAAACATGGATGAAATTTCAAAAGGATATTCCGCATTTTAGT
* * *
104948050 AGAATGAAAAATC-GAAGCCGAGCACGATTGGGCACGACCTCCCAATCCCCCAAACACAAAAT
66 AGAACGAAAAATCAAAAGCC-AGCACGATAGGGCACGACCTCCCAATCCCCCAAACACAAAAT
* *
104948112 ATTGCCTCGTTTTAATTTTTTAAAAAAAAAAACATGGATGAAGTTTCAAAAGGATATTCCGCATT
1 ATTGCCTCATTTTAA--TTTT---AAAAAAAACATGGATGAAATTTCAAAAGGATATTCCGCATT
* *
104948177 TTAGTTGAACGAAAAATCAAAATCCAGCACGATAGGGCACGA
61 TTAGTAGAACGAAAAATCAAAAGCCAGCACGATAGGGCACGA
104948219 TTCCTCGAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
125 14 0.16
128 3 0.03
132 66 0.76
133 4 0.05
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (127 bp):
ATTGCCTCATTTTAATTTTAAAAAAAACATGGATGAAATTTCAAAAGGATATTCCGCATTTTAGT
AGAACGAAAAATCAAAAGCCAGCACGATAGGGCACGACCTCCCAATCCCCCAAACACAAAAT
Found at i:104948394 original size:21 final size:23
Alignment explanation
Indices: 104948347--104948400 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
104948337 CATTCAAGAT
**
104948347 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
104948370 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
104948391 AAAAT-ATATA
1 AAAATAATATA
104948401 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:104948510 original size:24 final size:26
Alignment explanation
Indices: 104948481--104948534 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
104948471 TGAGCGTTGT
* *
104948481 ATAAAAAGT-TAAAATAGAT-AAT-A
1 ATAAAAAATGTAAAATAAATAAATAA
104948504 ATAAAAAATGTAAAATAAATAAATAA
1 ATAAAAAATGTAAAATAAATAAATAA
104948530 ATAAA
1 ATAAA
104948535 TAGAATGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 8 0.31
24 9 0.35
25 3 0.12
26 6 0.23
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (26 bp):
ATAAAAAATGTAAAATAAATAAATAA
Found at i:104948622 original size:18 final size:17
Alignment explanation
Indices: 104948599--104948724 Score: 68
Period size: 18 Copynumber: 7.4 Consensus size: 17
104948589 TAATATTAGT
104948599 ATATAAATAGAAATAAAA
1 ATATAAATA-AAATAAAA
*
104948617 ATAT-AAT-AAATAGAA
1 ATATAAATAAAATAAAA
* *
104948632 ATAT-AATAATAGTAGAA
1 ATATAAATAA-AATAAAA
104948649 ATATAAATAGATAA-ATAAA
1 ATATAAATA-A-AATA-AAA
* *
104948668 AT-TAGAT-AAATAATA
1 ATATAAATAAAATAAAA
* *
104948683 ATAGT-ATTAGAATAAAA
1 ATA-TAAATAAAATAAAA
*
104948700 AAATAAATATAAATAAAA
1 ATATAAATA-AAATAAAA
104948718 ATATAAA
1 ATATAAA
104948725 AATAATAGCA
Statistics
Matches: 83, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
15 20 0.24
16 5 0.06
17 25 0.30
18 26 0.31
19 7 0.08
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (17 bp):
ATATAAATAAAATAAAA
Found at i:104948633 original size:15 final size:15
Alignment explanation
Indices: 104948609--104948654 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
104948599 ATATAAATAG
*
104948609 AAATAAAAATATAAT
1 AAATAGAAATATAAT
104948624 AAATAGAAATATAAT
1 AAATAGAAATATAAT
104948639 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
104948655 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:104948664 original size:14 final size:13
Alignment explanation
Indices: 104948624--104948714 Score: 60
Period size: 14 Copynumber: 6.4 Consensus size: 13
104948614 AAAATATAAT
104948624 AAATAGA-AATATA
1 AAATAGATAA-ATA
*
104948637 ATAATAGTAGAAATA
1 A-AATAG-ATAAATA
104948652 TAAATAGATAAATA
1 -AAATAGATAAATA
104948666 AAATTAGATAAATA
1 AAA-TAGATAAATA
104948680 ATAATAGTATTAGAATA
1 A-AATAG-A-TA-AATA
*
104948697 AAA-AAATAAATA
1 AAATAGATAAATA
104948709 TAAATA
1 -AAATA
104948715 AAAATATAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 21
0.74 0.02 0.24
Matches are distributed among these distances:
12 4 0.06
13 9 0.14
14 27 0.42
15 13 0.20
16 7 0.11
17 5 0.08
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (13 bp):
AAATAGATAAATA
Found at i:104948683 original size:29 final size:30
Alignment explanation
Indices: 104948619--104948740 Score: 76
Period size: 29 Copynumber: 4.2 Consensus size: 30
104948609 AAATAAAAAT
104948619 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
104948649 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
* * * * ** *
104948677 ATAAT-AATAGTATTAGAATAAAAAAATAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
* * * *
104948706 AT-ATAAATAAAAATATAAAAATAATAGCA
1 ATAATAAATAGAAATATAATAATAGTAGAA
104948735 ATAATA
1 ATAATA
104948741 TATTAAATTA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 43 0.62
30 7 0.10
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.27
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:104948727 original size:14 final size:15
Alignment explanation
Indices: 104948609--104948731 Score: 50
Period size: 14 Copynumber: 8.5 Consensus size: 15
104948599 ATATAAATAG
104948609 AAATAA-AAATATAA
1 AAATAATAAATATAA
*
104948623 TAAAT-AGAAATATAA
1 -AAATAATAAATATAA
* * *
104948638 TAATAGTAGAA-ATAT
1 AAATAATA-AATATAA
104948653 AAATAGAT-AA-ATAA
1 AAATA-ATAAATATAA
*
104948667 AATTAGATAAATAATAA
1 AAATA-ATAAAT-ATAA
* * * *
104948684 TAGTATTAGA-ATAA
1 AAATAATAAATATAA
104948698 AAA-AATAAATAT--
1 AAATAATAAATATAA
104948710 AAATAA-AAATATAA
1 AAATAATAAATATAA
104948724 AAATAATA
1 AAATAATA
104948732 GCAATAATAT
Statistics
Matches: 80, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
12 9 0.11
13 6 0.08
14 29 0.36
15 23 0.29
16 6 0.08
17 7 0.09
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (15 bp):
AAATAATAAATATAA
Found at i:104949967 original size:88 final size:88
Alignment explanation
Indices: 104949871--104950413 Score: 251
Period size: 88 Copynumber: 6.1 Consensus size: 88
104949861 TACCTTAGGA
*
104949871 AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAA
1 AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGTTAAAA
104949936 TCTGCTCCATAGCCGATACATGG
66 TCTGCTCCATAGCCGATACATGG
* * * * * * *
104949959 AGATAAGACTCGCCATTTCTGATC-AGCT-CTATAGC-CGATACAT--G-GAGATAAGATCT-AT
1 AGATAAGACT---CATATCT--TCAACCTGCTAT--CTTGCTACCTCAGAGAGATAAG-GCTGGT
** ** * * *
104950017 AATTTGCAGTCTGCTTCC-TTG-C--TACCTCAGG
58 -GGTTAAAATCTGC-TCCATAGCCGATACAT--GG
** ** * * *
104950048 AAGATAAGACTTGTATCTTCAATTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGTTAAA
1 -AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGTTAAA
104950113 ATCTGCTCCATAGCCGATACATGG
65 ATCTGCTCCATAGCCGATACATGG
* * * * * * **
104950137 AGATAAGACTCACCATCTTCAACCTGCTCCATAGTCGATA--T-ATAGAGATAAGATCT-GTAAT
1 AGATAAGACTCA-TATCTTCAACCTGCT--AT-CTTGCTACCTCAGAGAGATAAG-GCTGGT-GG
** * * * *
104950198 TTTCAGTCTGCTTTC-TTG-C--TACCTCAGG
60 TTAAAATCTGC-TCCATAGCCGATACAT--GG
** * * * * * *
104950226 AAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAATGCTCGTGGGTAAA
1 -AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGTTAAA
* * *
104950291 ATTTGCTCCATAGCCGATATATGA
65 ATCTGCTCCATAGCCGATACATGG
* * * * * *
104950315 AGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAAAA
1 AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGTTAAAA
*
104950380 TCTGCTCCATAGCTGATACATGG
66 TCTGCTCCATAGCCGATACATGG
*
104950403 ATATAAGACTC
1 AGATAAGACTC
104950414 GCCATTTCTG
Statistics
Matches: 324, Mismatches: 89, Indels: 84
0.65 0.18 0.17
Matches are distributed among these distances:
85 3 0.01
86 10 0.03
87 21 0.06
88 131 0.40
89 77 0.24
90 45 0.14
91 23 0.07
92 11 0.03
93 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (88 bp):
AGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGTTAAAA
TCTGCTCCATAGCCGATACATGG
Found at i:104950004 original size:178 final size:178
Alignment explanation
Indices: 104949696--104950326 Score: 908
Period size: 178 Copynumber: 3.5 Consensus size: 178
104949686 CTTAAGGAGT
* * *
104949696 TAAGGCTCGTATCTTCAACTTACTCTCCTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
* *
104949761 GCTCCATAGCAGATACACGGAGATAAGACTCGCCATTTCTGATCTA-CTCCATAGCCGATACATG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATC-AGCTCCATAGCCGATACATG
* *
104949825 GAGATAAAATCTATAATTTGTAGTCTGCTTCCTTGCTACCTTAGGAAGA
130 GAGATAAGATCTATAATTTGTAGTCTGCTTCCTTGCTACCTCAGGAAGA
* * *
104949874 TAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
*
104949939 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCTATAGCCGATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCCATAGCCGATACATGG
*
104950004 AGATAAGATCTATAATTTGCAGTCTGCTTCCTTGCTACCTCAGGAAGA
131 AGATAAGATCTATAATTTGTAGTCTGCTTCCTTGCTACCTCAGGAAGA
* * * * *
104950052 TAAGACTTGTATCTTCAATTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGTTAAAATCT
1 TAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * * * * *
104950117 GCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTC-AACCTGCTCCATAGTCGATATATA
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCAT-TTCTGATCAGCTCCATAGCCGATACATG
* *
104950181 GAGATAAGATCTGTAATTT-TCAGTCTGCTTTCTTGCTACCTCAGGAAGA
130 GAGATAAGATCTATAATTTGT-AGTCTGCTTCCTTGCTACCTCAGGAAGA
* * * * * *
104950230 TAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAATGCTCGTGGGTAAAATTT
1 TAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
* *
104950295 GCTCCATAGCCGATATATGAAGATAAGACTCG
66 GCTCCATAGCCGATACATGGAGATAAGACTCG
104950327 TATCTTTAAC
Statistics
Matches: 408, Mismatches: 42, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
177 1 0.00
178 404 0.99
179 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (178 bp):
TAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCCATAGCCGATACATGG
AGATAAGATCTATAATTTGTAGTCTGCTTCCTTGCTACCTCAGGAAGA
Found at i:104950096 original size:89 final size:89
Alignment explanation
Indices: 104950003--104950276 Score: 222
Period size: 89 Copynumber: 3.1 Consensus size: 89
104949993 CCGATACATG
*
104950003 GAGATAAGATCTATAATTTGCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
1 GAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
* *
104950068 AATTTGCTCTCTTACTACCTCAGA
66 AACTTGCTCTCTTACTACCTTAGA
* ** * * * * ***
104950092 GAGATAAG-GCTGAT-GGTTAAAATCTGC-TCCATAGC--CGATACATGG-AGATAAGACTCACC
1 GAGATAAGATCT-ATAATTTACAGTCTGCTTCC-TTGCTAC-CT-CA-GGAAGATAAGACT-TGT
* * * * *
104950151 ATCTTCAACCTGCTC-CATAGT-CGATATATA
60 ATCTTCAACTTGCTCTCTTACTAC-CT-TAGA
* * *
104950181 GAGATAAGATCTGTAATTTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
1 GAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
*
104950246 AACTTGCTCTCTTGCTACCTTAGA
66 AACTTGCTCTCTTACTACCTTAGA
104950270 GAGATAA
1 GAGATAA
104950277 TGCTCGTGGG
Statistics
Matches: 132, Mismatches: 37, Indels: 32
0.66 0.18 0.16
Matches are distributed among these distances:
86 1 0.01
87 5 0.04
88 30 0.23
89 62 0.47
90 29 0.22
91 4 0.03
92 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
GAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
AACTTGCTCTCTTACTACCTTAGA
Found at i:104950363 original size:44 final size:44
Alignment explanation
Indices: 104950206--104950365 Score: 105
Period size: 44 Copynumber: 3.6 Consensus size: 44
104950196 ATTTTCAGTC
* * *
104950206 TGCTTTCTTGCTACCTCAG-GAAGATAAGACTTGTATCTTCAACT
1 TGCTCTCTTGCTACCTCAGAG-AGATAAGACTCGTATCTTAAACT
* *** * *
104950250 TGCTCTCTTGCTACCTTAGAGAGATAATG-CTCGTGGGTAAAATT
1 TGCTCTCTTGCTACCTCAGAGAGATAA-GACTCGTATCTTAAACT
* * ** *
104950294 TGCTC-CATAGCCGATAT-ATGA-AGATAAGACTCGTATCTTTAACT
1 TGCTCTC-TTG-CTACCTCA-GAGAGATAAGACTCGTATCTTAAACT
*
104950338 TGCTCTCTTGCTATCTCAGAGAGATAAG
1 TGCTCTCTTGCTACCTCAGAGAGATAAG
104950366 GCTGGTGGCT
Statistics
Matches: 85, Mismatches: 22, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
43 8 0.09
44 69 0.81
45 8 0.09
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (44 bp):
TGCTCTCTTGCTACCTCAGAGAGATAAGACTCGTATCTTAAACT
Found at i:104950414 original size:88 final size:88
Alignment explanation
Indices: 104950047--104950414 Score: 282
Period size: 88 Copynumber: 4.2 Consensus size: 88
104950037 GCTACCTCAG
* * * *
104950047 GAAGATAAGACTTGTATCTTCAATTTGCTCTCTTACTACCTCAGAGAGATAAGGCT-GATGGTTA
1 GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTCG-TGGCTA
104950111 AAATCTGCTCCATAGCCGATACAT
65 AAATCTGCTCCATAGCCGATACAT
* ** * * * ** * * *
104950135 GGAGATAAGACTCACCATCTTCAACCTGCTC-CATAGTCGATAT-ATAGAGATAA-GATCTGTAA
1 GAAGATAAGACTC-GTATCTTCAACTTGCTCTC-TTG-CTACCTCAGAGAGATAAGGCTC-GT-G
** ** * * * * *
104950197 TTTTCAGTCTGCTTTC-TTGCTAC-CT-CAG
61 GCTAAAATCTGC-TCCATAGC--CGATACAT
* * * *
104950225 GAAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAATGCTCGTGGGTAA
1 GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTCGTGGCTAA
* *
104950290 AATTTGCTCCATAGCCGATATAT
66 AATCTGCTCCATAGCCGATACAT
* * *
104950313 GAAGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTCGTGGCTAA
*
104950378 AATCTGCTCCATAGCTGATACAT
66 AATCTGCTCCATAGCCGATACAT
* *
104950401 GGATATAAGACTCG
1 GAAGATAAGACTCG
104950415 CCATTTCTGA
Statistics
Matches: 208, Mismatches: 57, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
86 1 0.00
87 3 0.01
88 117 0.56
89 51 0.25
90 32 0.15
91 3 0.01
92 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (88 bp):
GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTCGTGGCTAA
AATCTGCTCCATAGCCGATACAT
Found at i:104950587 original size:265 final size:266
Alignment explanation
Indices: 104950047--104950590 Score: 779
Period size: 265 Copynumber: 2.0 Consensus size: 266
104950037 GCTACCTCAG
* * *
104950047 GAAGATAAGACTTGTATCTTCAATTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGTTAA
1 GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGCTAA
*
104950112 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCAACCTGCTCCATAGTCGATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCAACCTGCTCCATAGTCCATA
* * * * *
104950177 TATAGAGATAAGATCTGTAATTTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTTGTAT
131 CATAGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
* * * * * * * *
104950242 CTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAATGCTCGTGGGTAAAATTTGCTCCATAGCCG
196 CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTCGTGGCTAAAATCTACTCCATAGCCG
*
104950307 ATATAT
261 ATACAT
* * * *
104950313 GAAGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGCTAA
* * * * *
104950378 AATCTGCTCCATAGCTGATACATGGATATAAGACTCGCCAT-TTCTGATCTGCTCCATAG-CCAT
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTC-AACCTGCTCCATAGTCCAT
*
104950441 ACATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTA
130 ACATAGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTA
* *
104950506 TCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGC-CGGTGGCTTAAATCTACTCCATAGT
195 TCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTC-GTGGCTAAAATCTACTCCATAGC
104950570 CGATACAT
259 CGATACAT
104950578 GAAGATAAGACTC
1 GAAGATAAGACTC
104950591 ATCATTTTTT
Statistics
Matches: 246, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
264 1 0.00
265 137 0.56
266 108 0.44
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (266 bp):
GAAGATAAGACTCGTATCTTCAACTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGCTAA
AATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCAACCTGCTCCATAGTCCATA
CATAGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTCGTGGCTAAAATCTACTCCATAGCCG
ATACAT
Found at i:104950589 original size:88 final size:88
Alignment explanation
Indices: 104950225--104950590 Score: 232
Period size: 88 Copynumber: 4.1 Consensus size: 88
104950215 GCTACCTCAG
* * * * * * *
104950225 GAAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAATGCTC-GTGGGTA
1 GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGC-CGGTGGCTA
* * *
104950289 AAATTTGCTCCATAGCCGATATAT
65 AAATCTGCTCCATAGTCGATACAT
* * * * * *
104950313 GAAGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTAA
104950378 AATCTGCTCCATAG-CTGATACAT
66 AATCTGCTCCATAGTC-GATACAT
* * * * * ** **
104950401 GGATATAAGACTCGCCAT-TTCTGATCTG--CTCC-A-TAGCCATACATG-GAGATAAGATCTAT
1 GAAGATAAGACTCG-TATCTTC-AACCTGCTCTCCTACTA-CC-T-CA-GAGAGATAAGGCCGGT
*** * * * * *
104950460 AATTTACAGTCTGCTTCC-TTGCTAC-CT-CAG
60 -GGCTAAAATCTGC-TCCATAG-T-CGATACAT
*
104950490 GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTTA
1 GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTAA
*
104950555 AATCTACTCCATAGTCGATACAT
66 AATCTGCTCCATAGTCGATACAT
104950578 GAAGATAAGACTC
1 GAAGATAAGACTC
104950591 ATCATTTTTT
Statistics
Matches: 205, Mismatches: 51, Indels: 44
0.68 0.17 0.15
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 10 0.05
88 131 0.64
89 45 0.22
90 9 0.04
91 3 0.01
92 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (88 bp):
GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTAA
AATCTGCTCCATAGTCGATACAT
Found at i:104950808 original size:443 final size:443
Alignment explanation
Indices: 104949869--104950766 Score: 1189
Period size: 443 Copynumber: 2.0 Consensus size: 443
104949859 GCTACCTTAG
** * * * * * * *
104949869 GAAGATAAGACTCATATCTTCAACCTGCTATCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTCGCATCTTTAACTTGCTCTCTAGCGATCACAGAGAGATAAGGCTGGTGGCTAA
*
104949934 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCTATAGCCGATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCCATAGCCGATA
* *
104949999 CATGGAGATAAGATCTATAATTTGCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTAT
131 CATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
** * * *
104950064 CTTCAATTTGCTCTCTTACTACCTCAGAGAGATAAGGCTGATGGTTAAAATCTGCTCCATAGCCG
196 CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGATGGTTAAAATCTACTCCATAGCCG
* * * *
104950129 ATACATGGAGATAAGACTCACCATCTTCAACCTGCTCCATAGTCGATATATAGAGATAAGATCTG
261 ATACATGAAGATAAGACTCACCATCTTCAACCTGCTCCATAGCCGATACATAGAGATAAAATCTG
* * * ** *
104950194 TAATTTTCAGTCTGCTTTCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACTTGCTCTCTT
326 CAATTTTCAGTCTGCTTAC-TCCTACCTCAGGAAGATAAGACGCGTATCTTCAACCTGCTCTCTT
* * * * *
104950259 GCTACCTTAGAGAGATAATGCTCGTGGGTAAAATTTGCTCCATAGCCGATATAT
390 GCTACCTCAGAGAGATAATGCTCGTGGCTAAAATCTGCTCCATAACCGATACAT
* * * *
104950313 GAAGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTCGCATCTTTAACTTGCTCTCTAGCGATCACAGAGAGATAAGGCTGGTGGCTAA
* * *
104950378 AATCTGCTCCATAGCTGATACATGGATATAAGACTCGCCATTTCTGATCTGCTCCATAGCC-ATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCCATAGCCGATA
104950442 CATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
131 CATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
* *
104950507 CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTT-AAATCTACTCCATAGTC
196 CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGATGG-TTAAAATCTACTCCATAGCC
* * ** **
104950571 GATACATGAAGATAAGACTCATCATTTTTTATTTGCTCCATAGCCGATACATAGAGATAAAATCT
260 GATACATGAAGATAAGACTCACCATCTTCAACCTGCTCCATAGCCGATACATAGAGATAAAATCT
* ** * *
104950636 GCAATTTTCAG-CTTG-TTAC-CCTACTGCTTAGGGGGTTAAGGCGCGTATCTTCAACCTGCTCT
325 GCAATTTTCAGTC-TGCTTACTCCTAC--CTCAGGAAGATAAGACGCGTATCTTCAACCTGCTCT
* *
104950698 CTTGCTATCTCAGAGAGATAA-GAC-CGGTGGCTTAAATCTGCTCCATAACCGATACAT
387 CTTGCTACCTCAGAGAGATAATG-CTC-GTGGCTAAAATCTGCTCCATAACCGATACAT
*
104950755 GGAGATAAGACT
1 GAAGATAAGACT
104950767 TGCCATTTTT
Statistics
Matches: 401, Mismatches: 47, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
440 4 0.01
441 2 0.00
442 89 0.22
443 187 0.47
444 119 0.30
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (443 bp):
GAAGATAAGACTCGCATCTTTAACTTGCTCTCTAGCGATCACAGAGAGATAAGGCTGGTGGCTAA
AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCAGCTCCATAGCCGATA
CATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTAT
CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGATGGTTAAAATCTACTCCATAGCCG
ATACATGAAGATAAGACTCACCATCTTCAACCTGCTCCATAGCCGATACATAGAGATAAAATCTG
CAATTTTCAGTCTGCTTACTCCTACCTCAGGAAGATAAGACGCGTATCTTCAACCTGCTCTCTTG
CTACCTCAGAGAGATAATGCTCGTGGCTAAAATCTGCTCCATAACCGATACAT
Found at i:104950821 original size:177 final size:178
Alignment explanation
Indices: 104950313--104950822 Score: 659
Period size: 177 Copynumber: 2.9 Consensus size: 178
104950303 GCCGATATAT
* * * * *
104950313 GAAGATAAGACTCGTATCTTTAACTTGCTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACGCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTTA
* * *
104950378 AATCTGCTCCATAGCTGATACATGGATATAAGACTCGCCATTTCTGATCTGCTCCATAGCC-ATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATA
* * * * *
104950442 CATGGAGATAAGATCTATAATTTACAGTCTGCTTCCTTGCTACCTCAG
131 CATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCCTACTACCTCAG
* * * *
104950490 GAAGATAAGACTCGTATCTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCCGGTGGCTTA
1 GAAGATAAGACGCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTTA
* * * ** * *
104950555 AATCTACTCCATAGTCGATACATGAAGATAAGACTCATCATTTTTTATTTGCTCCATAGCCGATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATA
* * * *
104950620 CATAGAGATAAAATCTGCAATTTTCAG-CTTG-TTACCCTACT-GCTTAG
131 CATAGAGATAAGATCTGTAATTTTCAGTC-TGCTT-CCCTACTACCTCAG
** * * *
104950667 GGGGTTAAGGCGCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGACCGGTGGCTTA
1 GAAGATAAGACGCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTTA
* *
104950732 AATCTGCTCCATAACCGATACATGGAGATAAGACTTGCCATTTTTGATCTGCTCCATAGCCGATA
66 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATA
104950797 CATAGAGATAAGATCTGTAATTTTCA
131 CATAGAGATAAGATCTGTAATTTTCA
104950823 CCGATGTCGC
Statistics
Matches: 284, Mismatches: 46, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
177 252 0.89
178 32 0.11
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (178 bp):
GAAGATAAGACGCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGCCGGTGGCTTA
AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATA
CATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCCTACTACCTCAG
Found at i:104957201 original size:21 final size:23
Alignment explanation
Indices: 104957154--104957207 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
104957144 CATTCAAGAT
**
104957154 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
104957177 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
104957198 AAAAT-ATATA
1 AAAATAATATA
104957208 ATGTGCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:104957332 original size:4 final size:4
Alignment explanation
Indices: 104957323--104957351 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
104957313 AAAAAATATA
104957323 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
104957352 GAATGTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:104957448 original size:15 final size:15
Alignment explanation
Indices: 104957424--104957469 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
104957414 ATATAAATAG
*
104957424 AAATAAAAATATAAT
1 AAATAGAAATATAAT
104957439 AAATAGAAATATAAT
1 AAATAGAAATATAAT
104957454 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
104957470 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:104957457 original size:29 final size:28
Alignment explanation
Indices: 104957389--104957487 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 28
104957379 TATATAAGAA
* * *
104957389 AAATAATAAT-GAAAATAATATTAGTATAT
1 AAATAATAATAG-AAA-AATATAAATAGAT
104957418 AAATAGA-AATA-AAAATATAATAAATAGA-
1 AAATA-ATAATAGAAAA-AT-ATAAATAGAT
*
104957446 AATATAATAATAGTAGAAATATAAATAGAT
1 AA-ATAATAATAG-AAAAATATAAATAGAT
104957476 AAATAATAATAG
1 AAATAATAATAG
104957488 TATCAGAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
27 1 0.02
28 8 0.14
29 40 0.70
30 5 0.09
31 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (28 bp):
AAATAATAATAGAAAAATATAAATAGAT
Found at i:104957469 original size:14 final size:15
Alignment explanation
Indices: 104957449--104957489 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
104957439 AAATAGAAAT
104957449 ATAATAATAGTAGAA
1 ATAATAATAGTAGAA
*
104957464 AT-ATAAATAG-ATAA
1 ATAAT-AATAGTAGAA
104957478 ATAATAATAGTA
1 ATAATAATAGTA
104957490 TCAGAATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
ATAATAATAGTAGAA
Found at i:104957484 original size:15 final size:14
Alignment explanation
Indices: 104957424--104957484 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
104957414 ATATAAATAG
*
104957424 AAATAAAAATATAAT
1 AAATAGAAA-ATAAT
104957439 AAATAGAAATATAAT
1 AAATAGAAA-ATAAT
104957454 -AATAGTAGAAAT-AT
1 AAATAG-A-AAATAAT
104957468 AAATAGATAAATAAT
1 AAATAGA-AAATAAT
104957483 AA
1 AA
104957485 TAGTATCAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 12 0.30
15 26 0.65
16 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
AAATAGAAAATAAT
Found at i:104957498 original size:29 final size:28
Alignment explanation
Indices: 104957436--104957498 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
104957426 ATAAAAATAT
*
104957436 AATAAATAGAAATATAATAATAGTAGAA
1 AATAAATAGAAATATAATAATAGTACAA
*
104957464 ATATAAATAGATAA-ATAATAATAGTATCAG
1 A-ATAAATAGA-AATATAATAATAGTA-CAA
104957494 AATAA
1 AATAA
104957499 CAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.03
29 25 0.83
30 4 0.13
ACGTcount: A:0.62, C:0.02, G:0.10, T:0.27
Consensus pattern (28 bp):
AATAAATAGAAATATAATAATAGTACAA
Found at i:104957526 original size:23 final size:24
Alignment explanation
Indices: 104957418--104957538 Score: 87
Period size: 23 Copynumber: 5.2 Consensus size: 24
104957408 ATTAGTATAT
104957418 AAATAGAAATA-AAAATATAAT--
1 AAATAGAAATATAAAATATAATAG
* *
104957439 AAATAGAAATATAATA-ATAGTAG
1 AAATAGAAATATAAAATATAATAG
* *
104957462 AAATATAAATAGATAAATAATAATAG
1 AAATAGAAATATA-AAAT-ATAATAG
* *
104957488 -TATCAG-AATAACAAAATA-AATAG
1 AAAT-AGAAAT-ATAAAATATAATAG
104957511 AAATAGAAATATAAAA-ATAATAG
1 AAATAGAAATATAAAATATAATAG
*
104957534 CAATA
1 AAATA
104957539 ATATATTAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
21 15 0.19
22 4 0.05
23 32 0.42
24 8 0.10
25 9 0.12
26 9 0.12
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.24
Consensus pattern (24 bp):
AAATAGAAATATAAAATATAATAG
Found at i:104966506 original size:16 final size:16
Alignment explanation
Indices: 104966485--104966556 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
104966475 TTTTGTATTA
104966485 TTTTAATATTAAATAT
1 TTTTAATATTAAATAT
* *
104966501 TTTTAAAATTAAATAA
1 TTTTAATATTAAATAT
* * *
104966517 TATTGATA-TAATCTAT
1 TTTTAATATTAA-ATAT
*
104966533 TTTAAATTAATTAAATAT
1 TTTTAA-T-ATTAAATAT
104966551 TTTTAA
1 TTTTAA
104966557 AAATATTTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
15 3 0.08
16 24 0.60
17 1 0.03
18 9 0.22
19 3 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (16 bp):
TTTTAATATTAAATAT
Found at i:104973951 original size:2 final size:2
Alignment explanation
Indices: 104973944--104973993 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
104973934 TCATTAAAAC
104973944 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
104973986 GA GA GA GA
1 GA GA GA GA
104973994 ATAAAACGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:104975232 original size:15 final size:15
Alignment explanation
Indices: 104975210--104975248 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
104975200 CACGACAAAT
104975210 TCCCTCTCCTTATCC
1 TCCCTCTCCTTATCC
* * *
104975225 TTCCTCTCTTTCTCC
1 TCCCTCTCCTTATCC
104975240 TCCCTCTCC
1 TCCCTCTCC
104975249 CTCCTCTCCT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.44
Consensus pattern (15 bp):
TCCCTCTCCTTATCC
Found at i:104976379 original size:18 final size:19
Alignment explanation
Indices: 104976358--104976412 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
104976348 AAGAGTCGGT
104976358 GAAAGGGA-AAGAAAAACA
1 GAAAGGGAGAAGAAAAACA
104976376 GAAA-GGAGAAG-AAAACGA
1 GAAAGGGAGAAGAAAAAC-A
* *
104976394 GAGAGGAAGAAGAAAAACA
1 GAAAGGGAGAAGAAAAACA
104976413 ATAGCCTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 8 0.26
18 11 0.35
19 7 0.23
20 5 0.16
ACGTcount: A:0.64, C:0.05, G:0.31, T:0.00
Consensus pattern (19 bp):
GAAAGGGAGAAGAAAAACA
Found at i:104976406 original size:19 final size:17
Alignment explanation
Indices: 104976370--104976409 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
104976360 AAGGGAAAGA
104976370 AAAACAGAAAGGAGAAG
1 AAAACAGAAAGGAGAAG
*
104976387 AAAACGAGAGAGGAAGAAG
1 AAAAC-AGAAAGG-AGAAG
104976406 AAAA
1 AAAA
104976410 ACAATAGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
19 9 0.45
ACGTcount: A:0.65, C:0.05, G:0.30, T:0.00
Consensus pattern (17 bp):
AAAACAGAAAGGAGAAG
Found at i:104976898 original size:18 final size:18
Alignment explanation
Indices: 104976832--104976900 Score: 52
Period size: 18 Copynumber: 3.8 Consensus size: 18
104976822 TCATTATGCC
*
104976832 TTTTGAAAT-TAAAAAATA
1 TTTT-AAATATAAAAATTA
* *
104976850 TATTAAATGTAAAAATGTGA
1 TTTTAAATATAAAAAT-T-A
**
104976870 TTTTTTA-ATAAAAATTA
1 TTTTAAATATAAAAATTA
104976887 TTTTAAATATAAAA
1 TTTTAAATATAAAA
104976901 TATGAAATTG
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
17 10 0.26
18 16 0.41
19 8 0.21
20 5 0.13
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (18 bp):
TTTTAAATATAAAAATTA
Found at i:104977491 original size:30 final size:31
Alignment explanation
Indices: 104977430--104977491 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
104977420 GGGGTTGTGA
* *
104977430 TGGGAGAGGAGTAAAAGTTTTGAGGGGAAAG
1 TGGGAGAGGAGTAAAAGTTTTGAGAGAAAAG
*
104977461 TGGGA-AGGAGTAAAATTTTTGAGAGAAAAG
1 TGGGAGAGGAGTAAAAGTTTTGAGAGAAAAG
104977491 T
1 T
104977492 AAAAAGGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.23
Consensus pattern (31 bp):
TGGGAGAGGAGTAAAAGTTTTGAGAGAAAAG
Found at i:104977554 original size:9 final size:9
Alignment explanation
Indices: 104977540--104977595 Score: 94
Period size: 9 Copynumber: 6.2 Consensus size: 9
104977530 TATAGTTTGA
104977540 TATTCGAAT
1 TATTCGAAT
104977549 TATTCGAAT
1 TATTCGAAT
104977558 TATTCGAAT
1 TATTCGAAT
*
104977567 TATTTGAAT
1 TATTCGAAT
*
104977576 TATTCGAGT
1 TATTCGAAT
104977585 TATTCGAAT
1 TATTCGAAT
104977594 TA
1 TA
104977596 AAAAACTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:104978017 original size:80 final size:80
Alignment explanation
Indices: 104977925--104978086 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
104977915 AGAGAGCTAC
*
104977925 AAGTCCCTCTACTAAAAATGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
1 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
104977990 AATCTTTAATATTTT
66 AATCTTTAATATTTT
*
104978005 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCTTGGATTTTTAAAATGTAAGCAAATTGGTAA
1 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
104978070 AATCTTTAATATTTT
66 AATCTTTAATATTTT
104978085 AA
1 AA
104978087 ACAGAAATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (80 bp):
AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
AATCTTTAATATTTT
Found at i:104980601 original size:15 final size:15
Alignment explanation
Indices: 104980581--104980614 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
104980571 GTTAAAATGA
104980581 ATTTTCTTTCAATTT
1 ATTTTCTTTCAATTT
* *
104980596 ATTTTCTTTTACTTT
1 ATTTTCTTTCAATTT
104980611 ATTT
1 ATTT
104980615 CAATTTATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTTTCTTTCAATTT
Found at i:104993883 original size:28 final size:28
Alignment explanation
Indices: 104993781--104993889 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 28
104993771 ACTATAATAC
* *
104993781 TCAAGTGGCAGGGCCGACCATATATTAT
1 TCAAGTGGCAGAGCCGACCATATATCAT
* * * *
104993809 TCAGGTGGAAGAACTGACCATATATCAT
1 TCAAGTGGCAGAGCCGACCATATATCAT
* * *
104993837 TCAAGTGTCAAAGCTGACCATATATCAT
1 TCAAGTGGCAGAGCCGACCATATATCAT
* *
104993865 TTAAGCGGCAGAGCCGACCATATAT
1 TCAAGTGGCAGAGCCGACCATATAT
104993890 AAAGCTAAAC
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (28 bp):
TCAAGTGGCAGAGCCGACCATATATCAT
Done.