Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 349 of 378
Found at i:104997300 original size:23 final size:23
Alignment explanation
Indices: 104997270--104997316 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
104997260 ATTGAGTTTG
*
104997270 TCTAGCTATGGGCATGACACTTA
1 TCTAGCTATGGGCACGACACTTA
104997293 TCTAGCTATGGGCACGACACTTA
1 TCTAGCTATGGGCACGACACTTA
104997316 T
1 T
104997317 GTGCATGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (23 bp):
TCTAGCTATGGGCACGACACTTA
Found at i:105000173 original size:20 final size:20
Alignment explanation
Indices: 105000145--105000187 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
105000135 ATCAATATTC
105000145 TTATACTGAATTTCAGGATT
1 TTATACTGAATTTCAGGATT
* * *
105000165 TTATCCTGAATTTTAGTATT
1 TTATACTGAATTTCAGGATT
105000185 TTA
1 TTA
105000188 ATTTGGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (20 bp):
TTATACTGAATTTCAGGATT
Found at i:105000890 original size:24 final size:24
Alignment explanation
Indices: 105000863--105000915 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
105000853 TCAAATACAA
*
105000863 AAAACCATACTGAGTTTAAACCCC
1 AAAACCATACTGAGTTCAAACCCC
* *
105000887 AAAACCATATTGAGTTCAGACCCC
1 AAAACCATACTGAGTTCAAACCCC
105000911 AAAAC
1 AAAAC
105000916 ATGTATTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.19
Consensus pattern (24 bp):
AAAACCATACTGAGTTCAAACCCC
Found at i:105007509 original size:16 final size:16
Alignment explanation
Indices: 105007488--105007519 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
105007478 ACAAAAGAGA
*
105007488 AATTCATGCACGTAAG
1 AATTCATGCACATAAG
105007504 AATTCATGCACATAAG
1 AATTCATGCACATAAG
105007520 TCTTGCGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (16 bp):
AATTCATGCACATAAG
Found at i:105019891 original size:19 final size:19
Alignment explanation
Indices: 105019867--105019906 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
105019857 ATAATTTACG
105019867 GAAAATGATTTACTTTTCT
1 GAAAATGATTTACTTTTCT
105019886 GAAAATGATTTACTTTTCT
1 GAAAATGATTTACTTTTCT
105019905 GA
1 GA
105019907 TGTTTGGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (19 bp):
GAAAATGATTTACTTTTCT
Found at i:105022193 original size:22 final size:23
Alignment explanation
Indices: 105022167--105022212 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
105022157 CAACCAAACC
105022167 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
105022189 AATTCATACATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
105022212 A
1 A
105022213 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:105022218 original size:23 final size:24
Alignment explanation
Indices: 105022173--105022224 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
105022163 AACCAATTCA
*
105022173 ACATATTTTCAAGATAAATTCAT-
1 ACATATTTTCAAGATAAAGTCATC
*
105022196 ACATATTTAT-AAGATAACGTCATC
1 ACATATTT-TCAAGATAAAGTCATC
105022220 ACATA
1 ACATA
105022225 CCCAAAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (24 bp):
ACATATTTTCAAGATAAAGTCATC
Found at i:105032199 original size:21 final size:21
Alignment explanation
Indices: 105032167--105032208 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
105032157 TATAAGCAAC
*
105032167 ATAATGAAAAATAATTGATAG
1 ATAATGAAAAATAATTAATAG
*
105032188 ATAAT-AATAAATGATTAATAG
1 ATAATGAA-AAATAATTAATAG
105032209 TAACTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.31
Consensus pattern (21 bp):
ATAATGAAAAATAATTAATAG
Found at i:105034096 original size:31 final size:29
Alignment explanation
Indices: 105034019--105034107 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 29
105034009 AATTTGTGAT
* * *
105034019 AATTAAATCAAATCAAAATTTCATGTATAA
1 AATTATATAAAATC-AAAGTTCATGTATAA
*
105034049 AATTGTATAAAATCAAAGTTCATGTATAA
1 AATTATATAAAATCAAAGTTCATGTATAA
* * *
105034078 AATTACATATTAAATCAAAGTCCATATATA
1 AATT--ATATAAAATCAAAGTTCATGTATA
105034108 GTTTTGAGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 18 0.37
30 11 0.22
31 20 0.41
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.34
Consensus pattern (29 bp):
AATTATATAAAATCAAAGTTCATGTATAA
Found at i:105035186 original size:26 final size:26
Alignment explanation
Indices: 105035143--105035193 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
105035133 AGCAGAACAT
* *
105035143 AACAACCCAACAAGAAAACATATGAG
1 AACAACCCAACAAAAAAACAGATGAG
*
105035169 AACAACCCAATAAAAAAACAGATGA
1 AACAACCCAACAAAAAAACAGATGA
105035194 TTAACTGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.61, C:0.22, G:0.10, T:0.08
Consensus pattern (26 bp):
AACAACCCAACAAAAAAACAGATGAG
Found at i:105041770 original size:18 final size:17
Alignment explanation
Indices: 105041744--105041782 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
105041734 TATGAAGGAT
105041744 AAAGAAGCATTTATCAGG
1 AAAGAAGCATTTATCA-G
*
105041762 AAAGTAGCATTTATCAG
1 AAAGAAGCATTTATCAG
105041779 AAAG
1 AAAG
105041783 GTAACTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (17 bp):
AAAGAAGCATTTATCAG
Found at i:105045113 original size:11 final size:11
Alignment explanation
Indices: 105045076--105045114 Score: 51
Period size: 11 Copynumber: 3.3 Consensus size: 11
105045066 TCAGACCAAC
105045076 AAACCAAAAAT
1 AAACCAAAAAT
105045087 AAACCCAAACAAAT
1 AAA-CC-AA-AAAT
105045101 AAACCAAAAAT
1 AAACCAAAAAT
105045112 AAA
1 AAA
105045115 ATCTAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 10 0.40
12 4 0.16
13 4 0.16
14 7 0.28
ACGTcount: A:0.72, C:0.21, G:0.00, T:0.08
Consensus pattern (11 bp):
AAACCAAAAAT
Found at i:105045432 original size:19 final size:19
Alignment explanation
Indices: 105045403--105045446 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
105045393 AAAATACAAG
*
105045403 AAAACAAAGAAGGAAAAAAC
1 AAAA-AAAGAAGCAAAAAAC
*
105045423 AAAAAAAGAAGCAGAAAAC
1 AAAAAAAGAAGCAAAAAAC
105045442 AAAAA
1 AAAAA
105045447 GCAAAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.77, C:0.09, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAGCAAAAAAC
Found at i:105045465 original size:27 final size:25
Alignment explanation
Indices: 105045416--105045470 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
105045406 ACAAAGAAGG
* *
105045416 AAAAAACAAAAAAAGAAGCAGAAAAC
1 AAAAAACAAAAAAAAAAGAAG-AAAC
*
105045442 AAAAAGCAAAAAAACAAAGAAGAAAC
1 AAAAAACAAAAAAA-AAAGAAGAAAC
105045468 AAA
1 AAA
105045471 CAGAGAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00
Consensus pattern (25 bp):
AAAAAACAAAAAAAAAAGAAGAAAC
Found at i:105046300 original size:15 final size:15
Alignment explanation
Indices: 105046277--105046306 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105046267 GCCTGGGATA
105046277 CTTGCTCTTTCGAGC
1 CTTGCTCTTTCGAGC
*
105046292 CTTGGTCTTTCGAGC
1 CTTGCTCTTTCGAGC
105046307 GCTTTTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.30, G:0.23, T:0.40
Consensus pattern (15 bp):
CTTGCTCTTTCGAGC
Found at i:105046458 original size:17 final size:18
Alignment explanation
Indices: 105046436--105046469 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
105046426 ATTTATTTAT
105046436 TTTTTATTTT-CTTTTTG
1 TTTTTATTTTACTTTTTG
105046453 TTTTTATTTTACTTTTT
1 TTTTTATTTTACTTTTT
105046470 AAACTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTATTTTACTTTTTG
Found at i:105046742 original size:20 final size:22
Alignment explanation
Indices: 105046703--105046742 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
105046693 TATGTCATTT
*
105046703 TATTTTAAAATTTTACATATCA
1 TATTTTAAAATTTCACATATCA
105046725 TATTTT-AAA-TTCACATAT
1 TATTTTAAAATTTCACATAT
105046743 TAAGTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTTAAAATTTCACATATCA
Found at i:105050500 original size:21 final size:20
Alignment explanation
Indices: 105050472--105050510 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
105050462 TTTTTTTTCG
*
105050472 AATTGAGTTAAGTGAAATGA
1 AATTGAGTCAAGTGAAATGA
*
105050492 AATTCGAGTCAAGTTAAAT
1 AATT-GAGTCAAGTGAAAT
105050511 AGAGTGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AATTGAGTCAAGTGAAATGA
Found at i:105050758 original size:20 final size:20
Alignment explanation
Indices: 105050733--105050773 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
105050723 TTTTTAAATT
105050733 TTTTTATACA-TTTTTTAGAA
1 TTTTTATA-ATTTTTTTAGAA
105050753 TTTTTATAATTTTTTTAGAA
1 TTTTTATAATTTTTTTAGAA
105050773 T
1 T
105050774 ATAAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTTATAATTTTTTTAGAA
Found at i:105051688 original size:18 final size:18
Alignment explanation
Indices: 105051619--105051680 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
105051609 ATTAATCTTC
105051619 AAAAATTTAAAATATCTATA-
1 AAAAA-TTAAAA-AT-TATAT
105051639 AAAAATTACAGAAA--ATAT
1 AAAAATTA-A-AAATTATAT
105051657 AAAAATTAAAAATTATAT
1 AAAAATTAAAAATTATAT
105051675 AAAAAT
1 AAAAAT
105051681 GTTAAATTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.08
17 4 0.11
18 18 0.49
19 3 0.08
20 7 0.19
21 2 0.05
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATTATAT
Found at i:105056079 original size:25 final size:25
Alignment explanation
Indices: 105056048--105056095 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
105056038 TTTTTATGAC
* *
105056048 TTTAATTAACATTGGCAAGCAGTTA
1 TTTAATTAACATTGACAAACAGTTA
105056073 TTTAATTAACATTGACAAACAGT
1 TTTAATTAACATTGACAAACAGT
105056096 AATCACTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (25 bp):
TTTAATTAACATTGACAAACAGTTA
Found at i:105056678 original size:16 final size:15
Alignment explanation
Indices: 105056583--105056679 Score: 54
Period size: 16 Copynumber: 6.3 Consensus size: 15
105056573 TGTCATGTTG
105056583 TTTTAAGATTAAATTA
1 TTTTAA-ATTAAATTA
* **
105056599 TTTCAAATTTTTATTA
1 TTTTAAA-TTAAATTA
** *
105056615 TTTTAAATTTGAGT-
1 TTTTAAATTAAATTA
*
105056629 TTTTGAA-TAAATTCA
1 TTTTAAATTAAATT-A
* *
105056644 TTTTAATTTCAAATCA
1 TTTTAAATT-AAATTA
105056660 TTTTAAATTAGAATTA
1 TTTTAAATTA-AATTA
105056676 TTTT
1 TTTT
105056680 GTATTCGAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
13 3 0.05
14 6 0.10
15 12 0.20
16 35 0.58
17 4 0.07
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (15 bp):
TTTTAAATTAAATTA
Found at i:105057600 original size:16 final size:16
Alignment explanation
Indices: 105057581--105057614 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
105057571 TTATTTCAAG
105057581 TTTAAATGAATTTAAA
1 TTTAAATGAATTTAAA
*
105057597 TTTAAATTAATTTAAA
1 TTTAAATGAATTTAAA
105057613 TT
1 TT
105057615 AAGATTCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTAAATGAATTTAAA
Found at i:105060566 original size:2 final size:2
Alignment explanation
Indices: 105060559--105060593 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
105060549 ATTGAAATTA
105060559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105060594 AACAATTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:105061111 original size:7 final size:7
Alignment explanation
Indices: 105061075--105061108 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
105061065 TTTAAATTAT
105061075 TTATATG
1 TTATATG
105061082 TTATATG
1 TTATATG
105061089 TTATATG
1 TTATATG
* *
105061096 CTATATA
1 TTATATG
105061103 TTATAT
1 TTATAT
105061109 ATTTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (7 bp):
TTATATG
Found at i:105063319 original size:22 final size:21
Alignment explanation
Indices: 105063284--105063344 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 21
105063274 AAAAGATCTA
105063284 CTATTTTTTGTTGTTTTAATG
1 CTATTTTTTGTTGTTTTAATG
* *
105063305 TTATTTTATTGTTGTTTTAGTG
1 CTATTTT-TTGTTGTTTTAATG
*
105063327 CTATTTTCTTATTGTTTT
1 CTATTTT-TTGTTGTTTT
105063345 CTTCCTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 6 0.18
22 28 0.82
ACGTcount: A:0.13, C:0.05, G:0.13, T:0.69
Consensus pattern (21 bp):
CTATTTTTTGTTGTTTTAATG
Found at i:105068357 original size:38 final size:38
Alignment explanation
Indices: 105068303--105068376 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
105068293 TTAAATCACA
*
105068303 TACTATATAACTTGGGGGTTTGCATACTATGTCATATG
1 TACTATATAACATGGGGGTTTGCATACTATGTCATATG
105068341 TACTATATAACATGGGGGTTTGCATACTATGTCATA
1 TACTATATAACATGGGGGTTTGCATACTATGTCATA
105068377 CCATATAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (38 bp):
TACTATATAACATGGGGGTTTGCATACTATGTCATATG
Found at i:105068391 original size:34 final size:34
Alignment explanation
Indices: 105068301--105068440 Score: 138
Period size: 34 Copynumber: 4.0 Consensus size: 34
105068291 TATTAAATCA
* *
105068301 CATACTATATAACT-TGGGGGTTTGCATACTATGT
1 CATACCATATAA-TGTGGGGGTTCGCATACTATGT
* ** *
105068335 CATATGTACTATATAACATGGGGGTTTGCATACTATGT
1 C--A--TACCATATAATGTGGGGGTTCGCATACTATGT
* *
105068373 CATACCATATAATGTGGGGGTTCACATACTTTGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
**
105068407 CATACCATATAATGTGATGGTTCGCATACTATGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
105068441 ATTAAGTGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
34 57 0.63
36 2 0.02
38 31 0.34
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (34 bp):
CATACCATATAATGTGGGGGTTCGCATACTATGT
Found at i:105068826 original size:18 final size:18
Alignment explanation
Indices: 105068803--105068840 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
105068793 TTAAAATAGG
105068803 ATTAGGAGTTAG-TTTAAA
1 ATTAGGA-TTAGATTTAAA
*
105068821 ATTAGGATTTGATTTAAA
1 ATTAGGATTAGATTTAAA
105068839 AT
1 AT
105068841 AATGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (18 bp):
ATTAGGATTAGATTTAAA
Found at i:105069151 original size:2 final size:2
Alignment explanation
Indices: 105069144--105069179 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
105069134 GGTATTTGAC
105069144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105069180 TTAACAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105076191 original size:156 final size:156
Alignment explanation
Indices: 105075990--105079527 Score: 4448
Period size: 156 Copynumber: 22.8 Consensus size: 156
105075980 ACGACTATAT
*
105075990 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
105076055 CTTTGAAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCACTGAAAGATG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * *
105076120 GCAATATTTTCTATAAAATTGACTAA
131 GCGATATTTTCTATAAAATCGGCGAA
*
105076146 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTTTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
105076211 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGTGTTGTTCTTCACTGAAAGAT
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** * *
105076275 GGTAATATTTTCTATAAAATTGGCAAA
130 GGCGATATTTTCTATAAAATCGGCGAA
105076302 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
105076367 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGCGTTGTTTTTCACTGAAAAAC
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** **
105076431 GATGATATTTTCTATAAAA-CTGGTAAA
130 GGCGATATTTTCTATAAAATC-GGCGAA
* *
105076458 TCTACTTTTAAAGACATTAGACTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAAA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105076523 CTTTGCAATACATAGTTGCATACAGTGTAACATTATTGCCTCGTGTTGTTCTTTACTGAAAAATG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
105076588 ACGATATTTTCTATAAAA-CTGGCGAA
131 GCGATATTTTCTATAAAATC-GGCGAA
* * * * *
105076614 TCTACTTTTAAAGACATTAAAATTTTCTTTTGGAATTTCTATTATTACTTGGCAAAAGCGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* ** * *
105076679 CTTTGTAATACATAGTTGCATGCAGGGTAACATTATTGCCTCGTGTTGTTCTTCATTGAATGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * **
105076744 ACGATATTTTCTATAAAACCGGTTAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
105076770 TCTACTTTTAAAGACATTAG-GTTTTCTTTTGGAATTTCTCTTATCATTTGGAAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
105076834 CTTTGCAATACATAGTTGCAT-TAAGTGTAACATTATTGCCTCGTGTTATTCTTCACTAAAAGAC
66 CTTTGCAATACATAGTTGCATGCAA-TGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
* * * *
105076898 GACGACATTTTCTATAAAATTGACGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
*
105076925 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTAT-TCTTATCACTTGGCCAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATT-TCTCTTATCACTTGGCAAAAGTGAAAC
* * *
105076989 ACTTTGTAATACATAGTTGCATGCAATGTAACATTATTGCCTC-TGTTCTTCTTCACTGAAAAAC
65 ACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
* *
105077053 AGTGATATTTTCTATAAAA-CGGGCGAA
130 GGCGATATTTTCTATAAAATC-GGCGAA
* *
105077080 CCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * ** * * *
105077145 CTTTGCAATACATAGTTGCATGTACTGTAACATTATTGCTTTATGTTGTTCTTCATTGAAAAACT
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
105077210 GCGATATTTTCTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
105077236 TCTACTTTTAAAGATATTAGATTTTTATTTTGGAATTTCTCTTATTACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
** * * * * * **
105077301 CTTTAAAATACATAGTTGTATGTAGTGTAACATTATTGCCTCGCGTTGTTCTGCACTGAAAGATA
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
105077366 GCAATATTTTCTATAAAATCGGCAAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
105077392 TATACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGAAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * * *
105077457 CTTTGTAATACATAGTTGCATGTAGTGTAGCATTATTGCCTCGTGTTGTTCTGCATTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * ** *
105077522 ACAATATTTTCTATAAAATCAACCAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
105077548 TCTACTTTTAAAGACATTAGATTTTTTTTTTTGAAATTTCTCTTATCACTTGGCAAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGA-TTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* * *
105077613 ACTTTGCAATATATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTGT-A-TGGAAAG
65 ACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCT-TCACT-GAAAG
** *
105077676 ACGGTTATATTTTCTATAAAATCGTCGAA
128 ACGGCGATATTTTCTATAAAATCGGCGAA
* * *
105077705 TCTACTTTTAAATACATTAGGTTTTTCTTTTGGAATTTCGCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
105077770 CTTTGCAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTAAAAGACA
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
** * *
105077835 ATGATATTTTTTTATAAAATCGACGAA
131 GCGATA-TTTTCTATAAAATCGGCGAA
* *
105077862 TCTACTTTTAAAGACATTAGAATTTTCTTTTGGAGTTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105077927 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTTGAGTTGTTCTACACCGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
105077992 ACTATATTTTCTATAAAATCGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
105078018 TCTACTTTTAAAGACATTAGATTTTTCTTTTGAAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
*
105078083 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACT
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
105078148 GCGATATTTTCTATAAAATTGACGTA
131 GCGATATTTTCTATAAAATCGGCGAA
*
105078174 TCTACATTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105078239 CTTTGCAATACATAGTTGGATTCAATGTAACATTACTGCCTCGTGTTGTTCTACACTGAAAGACA
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
105078304 GCGATATTTTCTATAAAATCGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
105078330 TCTACTTTTAAAGACATTAGA-TTGTCTTTAT-GAATTTCTCTTATCACTTGGAAAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTT-TGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* *** * * *** * * *
105078393 ACTTTGCAATACATAGTTGTATGCAGCATAACATGTGTAGAAAGACAGCGATATT-TTCTAC--A
65 ACTTTGCAATACATAGTTGCATGCAATGTAACAT-TATTG--CCTC-GTGTTGTTCTTC-ACTGA
* * * * * *
105078455 AA-ATCGACGA-ATATACTTTTAAA--GAC--A
125 AAGA-CGGCGATATTTTCTATAAAATCGGCGAA
* * * * * * * ** **
105078482 T-TAGATTTT----TCTTTTGGA-ATTTCTCTT---A--TCACTTGGAAAAAGT-G---AA---A
1 TCTA-CTTTTAAAGAC-ATTAGATTTTTCTTTTGGAATTTCTCTT--ATCACTTGGCAAAAGTGA
* * * * * **
105078529 CAC-TT-TGCAATACAAAGTTGCATGTAGTGTAACATTATTGCCTCGTGTTGTTAAGT-ACTGAA
62 AACACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTT-CTTCACTGAA
*
105078591 AGACGGTGATATTTTCTATAAAATCGGCGAA
126 AGACGGCGATATTTTCTATAAAATCGGCGAA
* * *
105078622 TCTACTTTTAAAGACATCAGGTTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAATTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
105078687 CTTTGCAATACATAGTTGCATGTAGTATAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
105078752 GCGATATTTTCTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
105078778 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATATCTCTCATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * * *
105078843 CTTTACAAAACATAATTGCATGCAGTGTAAAATTATTGCTTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
105078908 AC-ATTATTTTCTATAAAATTGGCGAA
131 GCGA-TATTTTCTATAAAATCGGCGAA
* *
105078934 CCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCCCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * **
105078999 CTTTACAATACATAGTTGCATTCACTGTAACATTATTGCCTCATGTTGTTCTTCACTGAAAGGTG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
105079064 GCGATATTTTCTATAAAATCGGTGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * * * *
105079090 TCTACTTTTAAATACATTAGATTTTTCTTTTCGAATATCTCTTTATCACTTGGAAAAAGTGAAAT
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTC-TTATCACTTGGCAAAAGTGAAAC
* * * * * *
105079155 ACTTTGTAATACATAGTTGTATGCAGTGTATCATTATTGCCTTGTGTTGTTCTTCACTGAAAGAT
65 ACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
105079220 GGCGATATTTTCTATAAAATCGGCGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* * *
105079247 TCTACTTTGAAAGACATTAGATTTTTCTTTTAGAATTTCTCTTATCACTTGGGAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
105079312 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTAGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
105079377 ACAATATTTTCTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
105079403 TATACTTTT-AAGAATATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAATGTGAAAC
1 TCTACTTTTAAAG-ACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* * * *
105079467 ACTTTGCAATACATAGTTGCATTCAATGTAACATTATTGCTTCATATTGTTCTTCACTGAA
65 ACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAA
105079528 CAAGTAGCTA
Statistics
Matches: 2960, Mismatches: 358, Indels: 128
0.86 0.10 0.04
Matches are distributed among these distances:
133 7 0.00
134 1 0.00
135 8 0.00
136 13 0.00
137 25 0.01
138 3 0.00
139 3 0.00
140 6 0.00
141 2 0.00
142 2 0.00
143 2 0.00
144 13 0.00
145 1 0.00
146 4 0.00
147 4 0.00
148 3 0.00
149 14 0.00
151 4 0.00
152 6 0.00
154 7 0.00
155 344 0.12
156 2047 0.69
157 431 0.15
158 3 0.00
159 7 0.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (156 bp):
TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
GCGATATTTTCTATAAAATCGGCGAA
Found at i:105077771 original size:469 final size:468
Alignment explanation
Indices: 105075990--105079527 Score: 4865
Period size: 469 Copynumber: 7.6 Consensus size: 468
105075980 ACGACTATAT
*
105075990 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105076055 CTTTGAAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCACTGAAAGATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * *
105076120 GCAATATTTTCTATAAAATTGACTAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
131 ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
* * *
105076185 TTTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGT
196 TCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTG-
* ** * *
105076250 CC-CGTGTTGTTCTTCACTGAAAGATGGTAATATTTTCTATAAAATTGGCAAATCTACTTTTAAA
260 CCTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAA
105076314 GACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACA
325 GACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACA
* * * * * * *
105076379 TAGTTGCATGCAATGTAACGTTATTGTCC-CGCGTTGTTTTTCACTGAAAAAC-GATGATATTTT
390 TAGTTGCATGTAGTGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGACAG-CGATATTTT
**
105076442 CTATAAAA-CTGGTAAA
453 CTATAAAATC-GGCGAA
* *
105076458 TCTACTTTTAAAGACATTAGACTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAAA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
105076523 CTTTGCAATACATAGTTGCATACAGTGTAACATTATTGCCTCGTGTTGTTCTTTACTGAAAAATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
105076588 ACGATATTTTCTATAAAA-CTGGCGAATCTACTTTTAAAGACATTAAAATTTTCTTTTGGAATTT
131 ACAATATTTTCTATAAAATC-GGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTT
* * * * * **
105076652 CTATTATTACTTGGCAAAAGCGAAACACTTTGTAATACATAGTTGCATGCAGGGTAACATTATTG
195 CTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTG
* * * * **
105076717 CCTCGTGTTGTTCTTCATTGAATGACGACGATATTTTCTATAAAACCGGTTAATCTACTTTTAAA
260 CCTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAA
* * *
105076782 GACATTAG-GTTTTCTTTTGGAATTTCTCTTATCATTTGGAAAAAGTGAAACACTTTGCAATACA
325 GACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACA
* * *
105076846 TAGTTGCAT-TAAGTGTAACATTATTGCCTCGTGTTATTCTTCACTAAAAGAC-GACGACATTTT
390 TAGTTGCATGT-AGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAG-CGATATTTT
* *
105076909 CTATAAAATTGACGAA
453 CTATAAAATCGGCGAA
*
105076925 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTAT-TCTTATCACTTGGCCAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATT-TCTCTTATCACTTGGCAAAAGTGAAAC
* * * *
105076989 ACTTTGTAATACATAGTTGCATGCAATGTAACATTATTGCCTC-TGTTCTTCTTCACTGAAAAAC
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
** * *
105077053 -AGTGATATTTTCTATAAAA-CGGGCGAACCTACTTTTAAAAACATTAGATTTTTCTTTTGGAAT
130 GA-CAATATTTTCTATAAAATC-GGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAAT
*
105077116 TTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATGT-ACTGTAACATTA
193 TTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCAT-TCAATGTAACATTA
* ** * * * *
105077180 TTGCTTTATGTTGTTCTTCATTGAAAAACTGCGATATTTTCTATAAAATTGGCGAATCTACTTTT
257 TTGCCTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTT
* * * **
105077245 AAAGATATTAGATTTTTATTTTGGAATTTCTCTTATTACTTGGCAAAAGTGAAACACTTTAAAAT
322 AAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAAT
* * * * *
105077310 ACATAGTTGTATGTAGTGTAACATTATTGCCTCGCGTTGTTCTGCACTGAAAGATAGCAATATTT
387 ACATAGTTGCATGTAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATATTT
*
105077375 TCTATAAAATCGGCAAA
452 TCTATAAAATCGGCGAA
* *
105077392 TATACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGAAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105077457 CTTTGTAATACATAGTTGCATGTAGTGTAGCATTATTGCCTCGTGTTGTTCTGCATTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
** * * *
105077522 ACAATATTTTCTATAAAATCAACCAATCTACTTTTAAAGACATTAGATTTTTTTTTTTGAAATTT
131 ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGA-TTTTTCTTTTGGAATTT
* *
105077587 CTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATATATAGTTGCATTCAGTGTAACATTATTG
195 CTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTG
** *
105077652 CCTCGTGTTGTTCTGT-A-TGGAAAGACGGTTATATTTTCTATAAAATCGTCGAATCTACTTTTA
260 CCTCGTGTTGTTCT-TCACT-GAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTA
* * *
105077715 AATACATTAGGTTTTTCTTTTGGAATTTCGCTTATCACTTGGCAAAAGTGAAACACTTTGCAATA
323 AAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATA
* **
105077780 CATAGTTGCAT-TCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTAAAAGACAATGATATTT
388 CATAGTTGCATGT-AGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATA-TT
* *
105077844 TTTTATAAAATCGACGAA
451 TTCTATAAAATCGGCGAA
* *
105077862 TCTACTTTTAAAGACATTAGAATTTTCTTTTGGAGTTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
105077927 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTTGAGTTGTTCTACACCGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
105077992 ACTATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGAAATTTC
131 ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
* *
105078057 TCTTATCACTTGGCAAAAATGAAACACTTTGCAATACATAGTTGCATGCAATGTAACATTATTGC
196 TCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTGC
* * * * *
105078122 CTCGTGTTGTTCTTCACTGAAAGACTGCGATATTTTCTATAAAATTGACGTATCTACATTTAAAG
261 CTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAG
105078187 ACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACAT
326 ACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACAT
* * * *
105078252 AGTTGGAT-TCAATGTAACATTACTGCCTCGTGTTGTTCTACACTGAAAGACAGCGATATTTTCT
391 AGTTGCATGT-AGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATATTTTCT
105078316 ATAAAATCGGCGAA
455 ATAAAATCGGCGAA
* *
105078330 TCTACTTTTAAAGACATTAGA-TTGTCTTTAT-GAATTTCTCTTATCACTTGGAAAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTT-TGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* * *
105078393 ACTTTGCAATACATAGTTGTATGCA--G---CA-TA-----ACATG-TG----T-A--GAAAGAC
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
* * * *
105078439 -AGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTTTTCTTTTGGAATT
130 GA-CAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATT
* * *
105078503 TCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGCATGT-AGTGTAACATTAT
194 TCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCAT-TCAATGTAACATTAT
** *
105078567 TGCCTCGTGTTGTTAAGT-ACTGAAAGACGGTGATATTTTCTATAAAATCGGCGAATCTACTTTT
258 TGCCTCGTGTTGTT-CTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTT
* * *
105078631 AAAGACATCAGGTTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAATTGAAACACTTTGCAAT
322 AAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAAT
* *
105078696 ACATAGTTGCATGTAGTATAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACGGCGATATTT
387 ACATAGTTGCATGTAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATATTT
*
105078761 TCTATAAAATCGACGAA
452 TCTATAAAATCGGCGAA
* *
105078778 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATATCTCTCATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
105078843 CTTTACAAAACATAATTGCATGCAGTGTAAAATTATTGCTTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
105078908 ACATTATTTTCTATAAAATTGGCGAACCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
131 ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
* * *
105078973 CCTTATCACTTGGCAAAAGTGAAACACTTTACAATACATAGTTGCATTCACTGTAACATTATTGC
196 TCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTGC
* ** * *
105079038 CTCATGTTGTTCTTCACTGAAAGGTGGCGATATTTTCTATAAAATCGGTGAATCTACTTTTAAAT
261 CTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAG
* * * * *
105079103 ACATTAGATTTTTCTTTTCGAATATCTCTTTATCACTTGGAAAAAGTGAAATACTTTGTAATACA
326 ACATTAGATTTTTCTTTTGGAATTTCTC-TTATCACTTGGCAAAAGTGAAACACTTTGCAATACA
* * * * **
105079168 TAGTTGTATGCAGTGTATCATTATTGCCTTGTGTTGTTCTTCACTGAAAGATGGCGATATTTTCT
390 TAGTTGCATGTAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATATTTTCT
105079233 ATAAAATCGGCGAA
455 ATAAAATCGGCGAA
* * *
105079247 TCTACTTTGAAAGACATTAGATTTTTCTTTTAGAATTTCTCTTATCACTTGGGAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
*
105079312 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTAGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
105079377 ACAATATTTTCTATAAAATTGGCGAATATACTTTT-AAGAATATTAGATTTTTCTTTTGGAATTT
131 ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAG-ACATTAGATTTTTCTTTTGGAATTT
*
105079441 CTCTTATCACTTGGCAAATGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTG
195 CTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTG
* * *
105079506 CTTCATATTGTTCTTCACTGAA
260 CCTCGTGTTGTTCTTCACTGAA
105079528 CAAGTAGCTA
Statistics
Matches: 2720, Mismatches: 296, Indels: 107
0.87 0.09 0.03
Matches are distributed among these distances:
447 1 0.00
448 333 0.12
449 59 0.02
450 1 0.00
451 1 0.00
454 1 0.00
455 4 0.00
456 1 0.00
460 3 0.00
461 4 0.00
462 2 0.00
465 3 0.00
466 197 0.07
467 489 0.18
468 599 0.22
469 842 0.31
470 180 0.07
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (468 bp):
TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
ACAATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTC
TCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACATAGTTGCATTCAATGTAACATTATTGC
CTCGTGTTGTTCTTCACTGAAAGACGGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAG
ACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACACTTTGCAATACAT
AGTTGCATGTAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACAGCGATATTTTCTA
TAAAATCGGCGAA
Found at i:105078548 original size:137 final size:136
Alignment explanation
Indices: 105078296--105078548 Score: 436
Period size: 137 Copynumber: 1.9 Consensus size: 136
105078286 GTTCTACACT
* * *
105078296 GAAAGACAGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTGTCTTTAT
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
*
105078361 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACATAGTTGTATGCAGCATAACA
66 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
105078426 TGTGTA
131 TGTGTA
*
105078432 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTTTTCTTT-
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGA-TTGTCTTTA
105078496 TGGAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
65 T-GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
105078549 CATGTAGTGT
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
136 53 0.48
137 57 0.52
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (136 bp):
GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
TGTGTA
Found at i:105081912 original size:125 final size:125
Alignment explanation
Indices: 105081770--105081994 Score: 351
Period size: 125 Copynumber: 1.8 Consensus size: 125
105081760 TAAAAATTAA
* * * *
105081770 ATCAAGTATAGGGTGTCACATTTAGTGATATCATTATAATTTAGATTTCTTTTCATTTTTAAAAT
1 ATCAAATATAGGATGTCACATTTAGTGATATCATTATAATTTAAATTTATTTTCATTTTTAAAAT
* *
105081835 TATACATTTTGATCTTAAAGAAATTAACTACATATTCAAATCTGAATATTCAACAATCAG
66 TATACATTTCGATCTTAAAGAAACTAACTACATATTCAAATCTGAATATTCAACAATCAG
* * * *
105081895 ATCAAATATAGGATGTCATATTTAGTGGTATCATTGTAATTTAAATTTATTTTTATTTTTAAAAT
1 ATCAAATATAGGATGTCACATTTAGTGATATCATTATAATTTAAATTTATTTTCATTTTTAAAAT
*
105081960 TATACATTTCGATCTTAAATAAACTAACTACATAT
66 TATACATTTCGATCTTAAAGAAACTAACTACATAT
105081995 GAAATTGCCA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
125 89 1.00
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.43
Consensus pattern (125 bp):
ATCAAATATAGGATGTCACATTTAGTGATATCATTATAATTTAAATTTATTTTCATTTTTAAAAT
TATACATTTCGATCTTAAAGAAACTAACTACATATTCAAATCTGAATATTCAACAATCAG
Found at i:105084276 original size:29 final size:29
Alignment explanation
Indices: 105084212--105084285 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
105084202 AATTTAAATT
* * * *
105084212 TATTATTATAATTTTTTGAAAATATTTTTT
1 TATTTTTAT-ATTTTTTAAAAATATTTGTG
105084242 TATTTTTATATATTTTTAAAAATATTTGTG
1 TATTTTTATAT-TTTTTAAAAATATTTGTG
105084272 T-TTTTTATATTTTT
1 TATTTTTATATTTTT
105084286 ATATTTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 4 0.10
29 11 0.28
30 24 0.62
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (29 bp):
TATTTTTATATTTTTTAAAAATATTTGTG
Found at i:105086745 original size:19 final size:20
Alignment explanation
Indices: 105086701--105086746 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
105086691 TTTTTTATGC
*
105086701 ATATTTTATTTAGTTAAACA
1 ATATTTTATTTAGTTAAAAA
* *
105086721 AGATTTTATTT-TTTAAAAA
1 ATATTTTATTTAGTTAAAAA
105086740 ATATTTT
1 ATATTTT
105086747 TTAAAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.54
Consensus pattern (20 bp):
ATATTTTATTTAGTTAAAAA
Found at i:105086746 original size:14 final size:14
Alignment explanation
Indices: 105086727--105086755 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
105086717 AACAAGATTT
105086727 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
105086741 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
105086755 T
1 T
105086756 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTTTAAAAAA
Found at i:105087062 original size:18 final size:17
Alignment explanation
Indices: 105087011--105087066 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
105087001 CACTTAGGCC
105087011 TAATTTTTATATATTTTA
1 TAATTTTTA-ATATTTTA
* *
105087029 TGATTTCCT-ATAATTTTA
1 TAATTT-TTAAT-ATTTTA
105087047 TAATTTTTAATGATTTTA
1 TAATTTTTAAT-ATTTTA
105087065 TA
1 TA
105087067 TATAAAATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.10
18 26 0.87
19 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (17 bp):
TAATTTTTAATATTTTA
Found at i:105087068 original size:28 final size:27
Alignment explanation
Indices: 105087015--105087068 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
105087005 TAGGCCTAAT
*
105087015 TTTTATATATTTTATGATTTCCTATAA
1 TTTTATATATTTTATGATTTCATATAA
*
105087042 TTTTATA-ATTTTTAATGATTTTATATA
1 TTTTATATA-TTTT-ATGATTTCATATA
105087069 TAAAATACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.04
27 11 0.48
28 11 0.48
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTATATATTTTATGATTTCATATAA
Found at i:105098485 original size:25 final size:25
Alignment explanation
Indices: 105098445--105098540 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 25
105098435 ATGCTCTTAT
105098445 GAGCACATA-AACGGGAAGCTTTTTC
1 GAGC-CATATAACGGGAAGCTTTTTC
* *
105098470 GAGCCATATAATGGGAAGCTTATGT-
1 GAGCCATATAACGGGAAGCTT-TTTC
** * *
105098495 GAGCTGTATAACGGGAAGCTCTTGC
1 GAGCCATATAACGGGAAGCTTTTTC
* * *
105098520 GAGCCAAATATCGAGAAGCTT
1 GAGCCATATAACGGGAAGCTT
105098541 AATCAAGCTA
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
24 5 0.09
25 47 0.87
26 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTTTTTC
Found at i:105111137 original size:16 final size:16
Alignment explanation
Indices: 105111113--105111163 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
105111103 TGAATTACTA
*
105111113 ATTACAGTTCTATTCT
1 ATTACAGTTCTATTCC
*
105111129 ATTATAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
105111145 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
105111161 ATT
1 ATT
105111164 CTAATGAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:105115914 original size:35 final size:37
Alignment explanation
Indices: 105115875--105115947 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 37
105115865 AAATGATGAC
*
105115875 ATGTT-AATAAAGACAATAATAAG-TAAT-AATAAATA
1 ATGTTAAATAAA-ACAATAATAAGACAATAAATAAATA
**
105115910 ATGTTAAATAAATTAATAATAAGACAATAAATAAATA
1 ATGTTAAATAAAACAATAATAAGACAATAAATAAATA
105115947 A
1 A
105115948 ACACAAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 14 0.44
36 9 0.28
37 9 0.28
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (37 bp):
ATGTTAAATAAAACAATAATAAGACAATAAATAAATA
Found at i:105117013 original size:16 final size:17
Alignment explanation
Indices: 105116994--105117029 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
105116984 GAAAGGAAGA
105116994 GAGAAAAAGAG-GAGGG
1 GAGAAAAAGAGAGAGGG
105117010 GAG-AAAAGAGAGAGGG
1 GAGAAAAAGAGAGAGGG
105117026 GAGA
1 GAGA
105117030 GGGAGAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (17 bp):
GAGAAAAAGAGAGAGGG
Found at i:105118886 original size:130 final size:130
Alignment explanation
Indices: 105118738--105119000 Score: 490
Period size: 130 Copynumber: 2.0 Consensus size: 130
105118728 TGTTTTTTTT
*
105118738 TTGTTTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
1 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
105118803 CGCAATATGAGTTGATTTTGAAAAAGTAGAGATTAAAAGGTTCAACCCACCTCTCGCCATATGAG
66 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATAAG
105118868 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
1 TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
105118933 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATAAG
66 CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATAAG
105118998 TTG
1 TTG
105119001 GTTCTTGAAC
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (130 bp):
TTGTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATAAG
Found at i:105119112 original size:14 final size:14
Alignment explanation
Indices: 105119093--105119128 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
105119083 GCTGATTTTT
* *
105119093 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
105119107 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
105119121 TTGAAAAG
1 TTGAAAAG
105119129 ACCTCAGCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.25, T:0.19
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:105130467 original size:35 final size:37
Alignment explanation
Indices: 105130428--105130500 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 37
105130418 AAATGATGAC
*
105130428 ATGTT-AATAAAGACAATAATAAG-TAAT-AATAAATA
1 ATGTTAAATAAA-ACAATAATAAGACAATAAATAAATA
**
105130463 ATGTTAAATAAATTAATAATAAGACAATAAATAAATA
1 ATGTTAAATAAAACAATAATAAGACAATAAATAAATA
105130500 A
1 A
105130501 ACACAAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 14 0.44
36 9 0.28
37 9 0.28
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (37 bp):
ATGTTAAATAAAACAATAATAAGACAATAAATAAATA
Found at i:105131561 original size:18 final size:16
Alignment explanation
Indices: 105131540--105131578 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
105131530 AAGAAAGGAA
105131540 GAGAGAAAAAGAGGAGGG
1 GAGAG-AAAAGA-GAGGG
*
105131558 GAGAGAAGAGAGAGGG
1 GAGAGAAAAGAGAGGG
105131574 GAGAG
1 GAGAG
105131579 GGAGAGGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 5 0.25
18 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (16 bp):
GAGAGAAAAGAGAGGG
Found at i:105131578 original size:16 final size:15
Alignment explanation
Indices: 105131548--105131578 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
105131538 AAGAGAGAAA
105131548 AAGAGGAGGGGAGAG
1 AAGAGGAGGGGAGAG
105131563 AAGAGAGAGGGGAGAG
1 AAGAG-GAGGGGAGAG
105131579 GGAGAGGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (15 bp):
AAGAGGAGGGGAGAG
Found at i:105132760 original size:16 final size:15
Alignment explanation
Indices: 105132721--105132762 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
105132711 ATTTCAAATC
*
105132721 TATAGAAAACAATTTA
1 TATAGAAAA-AATTAA
105132737 TATA-AAAAAATTAA
1 TATAGAAAAAATTAA
105132751 GTATAGAAAAAA
1 -TATAGAAAAAA
105132763 ATACACCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 5 0.22
15 8 0.35
16 10 0.43
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.26
Consensus pattern (15 bp):
TATAGAAAAAATTAA
Found at i:105145525 original size:11 final size:11
Alignment explanation
Indices: 105145509--105145537 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
105145499 GTAATGTTAA
105145509 AATATATACAT
1 AATATATACAT
105145520 AATATATACAT
1 AATATATACAT
105145531 -ATATATA
1 AATATATA
105145538 AAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:105145649 original size:19 final size:20
Alignment explanation
Indices: 105145588--105145654 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
105145578 AAATATATAC
105145588 ATAATAA-TATTAA-AATAAA
1 ATAATAAGTA-TAATAATAAA
*
105145607 ATAATAAGTGATAATAGTGAAA
1 ATAATAAGT-ATAATAAT-AAA
105145629 ATAATAAGTATAATAATAAA
1 ATAATAAGTATAATAATAAA
105145649 TATAAT
1 -ATAAT
105145655 GATATACGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 7 0.17
20 7 0.17
21 15 0.37
22 12 0.29
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.31
Consensus pattern (20 bp):
ATAATAAGTATAATAATAAA
Found at i:105145692 original size:20 final size:19
Alignment explanation
Indices: 105145669--105145734 Score: 51
Period size: 22 Copynumber: 3.2 Consensus size: 19
105145659 TACGAAAATA
*
105145669 ATACTATATATAAAATATGT
1 ATACTA-ATATAAAATATAT
*
105145689 ATACAAGAATAATAAAATATAT
1 ATAC--TAAT-ATAAAATATAT
*
105145711 ATACTAATATTAATAATAAAT
1 ATACTAATA-TAA-AATATAT
105145732 ATA
1 ATA
105145735 GTAGGAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 11 0.30
22 15 0.41
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATACTAATATAAAATATAT
Found at i:105145900 original size:23 final size:24
Alignment explanation
Indices: 105145815--105145931 Score: 84
Period size: 23 Copynumber: 4.8 Consensus size: 24
105145805 AATGTTTAAG
*
105145815 AATATATACATAA-GATGATATGAA
1 AATATATACATAATAAT-ATATGAA
* *
105145839 AATATGTACATGGAATAGTATAT-AA
1 AATATATACAT--AATAATATATGAA
*
105145864 AAAATATA-ACTAATAATAT-TGAA
1 AATATATACA-TAATAATATATGAA
105145887 AATATATACATAAT-ATATAT-AA
1 AATATATACATAATAATATATGAA
*
105145909 AACATATACTATATATACATATA
1 AATATATAC-ATA-ATA-ATATA
105145932 CATTAGAAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 20
0.73 0.08 0.20
Matches are distributed among these distances:
22 15 0.20
23 24 0.32
24 14 0.19
25 9 0.12
26 11 0.15
27 1 0.01
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.32
Consensus pattern (24 bp):
AATATATACATAATAATATATGAA
Found at i:105146090 original size:24 final size:26
Alignment explanation
Indices: 105146058--105146126 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
105146048 ATACATAACA
* *
105146058 TAAAAATATATATAA-ATGTA-GTAT
1 TAAAAATATACATAATATATACGTAT
105146082 TAAAAATATACATAATATATACGTAT
1 TAAAAATATACATAATATATACGTAT
105146108 TAAAAATAATA-ATAATATA
1 TAAAAAT-ATACATAATATA
105146127 AAAAAACAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.35
25 4 0.10
26 19 0.47
27 3 0.08
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (26 bp):
TAAAAATATACATAATATATACGTAT
Found at i:105146176 original size:17 final size:16
Alignment explanation
Indices: 105146154--105146197 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
105146144 AATACTTCAC
105146154 AAATATATATATACTAA
1 AAATATATATATA-TAA
*
105146171 AAATATACATA-ATAA
1 AAATATATATATATAA
*
105146186 TAATATATATAT
1 AAATATATATAT
105146198 GTATATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 12 0.52
16 1 0.04
17 10 0.43
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATATATATATAA
Found at i:105151514 original size:26 final size:26
Alignment explanation
Indices: 105151482--105151535 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
105151472 GAGCCATTTC
105151482 AAAAATTTATATTTGAGATATCAAAT
1 AAAAATTTATATTTGAGATATCAAAT
105151508 AAAAATTTATATTTGAGATATCAAAT
1 AAAAATTTATATTTGAGATATCAAAT
105151534 AA
1 AA
105151536 CAAAAAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (26 bp):
AAAAATTTATATTTGAGATATCAAAT
Found at i:105151975 original size:15 final size:16
Alignment explanation
Indices: 105151935--105151978 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
105151925 ATTATTGTCC
*
105151935 AGATTCATTTGTTTAAA
1 AGATTAATTT-TTTAAA
*
105151952 AGCTTAATTTTTTAAA
1 AGATTAATTTTTTAAA
105151968 A-ATTAATTTTT
1 AGATTAATTTTT
105151979 AATTTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 9 0.38
16 7 0.29
17 8 0.33
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (16 bp):
AGATTAATTTTTTAAA
Found at i:105152014 original size:20 final size:20
Alignment explanation
Indices: 105151989--105152030 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
105151979 AATTTTTTAT
* * *
105151989 AAATTTTTAAAATATTATTA
1 AAATTTATAAAAAAATATTA
105152009 AAATTTATAAAAAAATATTA
1 AAATTTATAAAAAAATATTA
105152029 AA
1 AA
105152031 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATTTATAAAAAAATATTA
Found at i:105152660 original size:21 final size:22
Alignment explanation
Indices: 105152636--105152691 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
105152626 GAAATTTATT
* *
105152636 TAATATTTTTATACATTT-TAA
1 TAATATTTTTATAAATTTAAAA
105152657 TAAT-TTTTTATAAATTTAAAA
1 TAATATTTTTATAAATTTAAAA
*
105152678 TAA-ATTTTTTTAAA
1 TAATATTTTTATAAA
105152692 AAAATTAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATATTTTTATAAATTTAAAA
Found at i:105152666 original size:20 final size:21
Alignment explanation
Indices: 105152636--105152691 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
105152626 GAAATTTATT
* *
105152636 TAATATTTTTATACATTT-TAA
1 TAAT-TTTTTATAAATTTAAAA
105152657 TAATTTTTTATAAATTTAAAA
1 TAATTTTTTATAAATTTAAAA
105152678 TAAATTTTTT-TAAA
1 T-AATTTTTTATAAA
105152692 AAAATTAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.39
21 11 0.35
22 8 0.26
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATTTTTTATAAATTTAAAA
Found at i:105152974 original size:2 final size:2
Alignment explanation
Indices: 105152969--105152995 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
105152959 AAAAAAAAAA
105152969 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
105152996 CTGAGACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105164338 original size:21 final size:22
Alignment explanation
Indices: 105164314--105164356 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
105164304 TCTTTCGTTG
105164314 TATTTTGTATTT-CTAACCTTT
1 TATTTTGTATTTCCTAACCTTT
* *
105164335 TATTTTTTTTTTCCTAACCTTT
1 TATTTTGTATTTCCTAACCTTT
105164357 CCTAACCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.16, C:0.16, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTTTGTATTTCCTAACCTTT
Found at i:105165805 original size:15 final size:15
Alignment explanation
Indices: 105165785--105165815 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105165775 AAAACAATTC
105165785 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
105165800 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
105165815 C
1 C
105165816 TTTGGACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (15 bp):
CAAAGTTGTTATTAG
Found at i:105166597 original size:27 final size:27
Alignment explanation
Indices: 105166559--105166624 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
105166549 AGGGAGTGCT
*
105166559 AGAGGCGGCACCGTTTGTGCCTCTGGC
1 AGAGGCGGCACCGGTTGTGCCTCTGGC
105166586 AGAGG-GGACACCGGTTGTGCCTCTGGC
1 AGAGGCGG-CACCGGTTGTGCCTCTGGC
*
105166613 AAAGGCGGCACC
1 AGAGGCGGCACC
105166625 TCGTTTGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.17, C:0.29, G:0.38, T:0.17
Consensus pattern (27 bp):
AGAGGCGGCACCGGTTGTGCCTCTGGC
Found at i:105166656 original size:3 final size:3
Alignment explanation
Indices: 105166650--105166718 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
105166640 GGTTGGGGAC
* * *
105166650 CTT CTT CTT CTT C-T CTT CTC CTT -TT TTT CTT GCTC CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT
* *
105166694 CTT CTC CTT GCTG CTT CTT GCTT CT
1 CTT CTT CTT -CTT CTT CTT -CTT CT
105166719 GCTGCTGAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
2 4 0.08
3 41 0.79
4 7 0.13
ACGTcount: A:0.00, C:0.35, G:0.06, T:0.59
Consensus pattern (3 bp):
CTT
Found at i:105166712 original size:32 final size:29
Alignment explanation
Indices: 105166656--105166715 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
105166646 GGACCTTCTT
**
105166656 CTTCTTCTCTTCTCCTTTTTTTCTTGCTC
1 CTTCTTCTCTTCTCCTTTGCTTCTTGCTC
105166685 CTTCTTCTTCTTCTCCTTGCTGCTTCTTGCT
1 CTTCTTC-TCTTCTCCTT--TGCTTCTTGCT
105166716 TCTGCTGCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 10 0.38
32 9 0.35
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.58
Consensus pattern (29 bp):
CTTCTTCTCTTCTCCTTTGCTTCTTGCTC
Found at i:105168701 original size:29 final size:29
Alignment explanation
Indices: 105168669--105168805 Score: 202
Period size: 29 Copynumber: 4.5 Consensus size: 29
105168659 ATAGTGAATC
105168669 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
105168698 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
105168728 CGCACACTTAGTGCTATATATTTTATTTTCAGTT
1 CGCACACTTAGTGC--TATA---TATTTTCAGCT
*
105168762 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
105168791 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
105168806 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 12
0.89 0.01 0.11
Matches are distributed among these distances:
29 45 0.45
30 24 0.24
32 8 0.08
34 23 0.23
35 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:105168815 original size:64 final size:64
Alignment explanation
Indices: 105168669--105168815 Score: 207
Period size: 64 Copynumber: 2.4 Consensus size: 64
105168659 ATAGTGAATC
105168669 CGCACACTTAGTGCTAT--A---TATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* * *
105168728 CGCACACTTAGTGCTATATATTTTATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATAAATTTTATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
105168791 CGCACACTTAGTGCTGTACAATTTT
1 CGCACACTTAGTGCTATA-AATTTT
105168816 TAAACCCGCA
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
59 17 0.22
61 1 0.01
63 26 0.33
64 34 0.44
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (64 bp):
CGCACACTTAGTGCTATAAATTTTATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:105171554 original size:26 final size:26
Alignment explanation
Indices: 105171525--105171594 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
105171515 CAATTATTTT
105171525 AATTAGAA-TGACTAAATTGATAAAAAA
1 AATTA-AAGTGACTAAATTGA-AAAAAA
* *
105171552 ATTTAAAGTGATTAAATTGAAAAAAA
1 AATTAAAGTGACTAAATTGAAAAAAA
*
105171578 AATTTAAAGTAACTAAA
1 AA-TTAAAGTGACTAAA
105171595 ATAAGGAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 9 0.25
27 27 0.75
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.29
Consensus pattern (26 bp):
AATTAAAGTGACTAAATTGAAAAAAA
Found at i:105171594 original size:27 final size:27
Alignment explanation
Indices: 105171535--105171594 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
105171525 AATTAGAATG
* *
105171535 ACTAAATTGATAAAAAAATTTAAAGTG
1 ACTAAATTGAAAAAAAAATTTAAAGTA
*
105171562 ATTAAATTGAAAAAAAAATTTAAAGTA
1 ACTAAATTGAAAAAAAAATTTAAAGTA
105171589 ACTAAA
1 ACTAAA
105171595 ATAAGGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.28
Consensus pattern (27 bp):
ACTAAATTGAAAAAAAAATTTAAAGTA
Found at i:105177352 original size:21 final size:22
Alignment explanation
Indices: 105177327--105177368 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
105177317 GATAAAATTA
105177327 AATCTCAAAACTCAAA-ATAAT
1 AATCTCAAAACTCAAATATAAT
*
105177348 AATCTCAAAACTTAAATATAA
1 AATCTCAAAACTCAAATATAA
105177369 AATTCTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (22 bp):
AATCTCAAAACTCAAATATAAT
Found at i:105177792 original size:20 final size:19
Alignment explanation
Indices: 105177767--105177811 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
105177757 CGGAAAATAA
105177767 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
*
105177787 TTTCTGGAAATGATTTACT
1 TTTCTGAAAATGATTTACT
105177806 TTTCTG
1 TTTCTG
105177812 GTGTTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:105177799 original size:19 final size:19
Alignment explanation
Indices: 105177775--105177812 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
105177765 AATTTCTGAA
105177775 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
105177794 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
105177813 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:105177954 original size:2 final size:2
Alignment explanation
Indices: 105177947--105177971 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105177937 TTGAGTTTAT
105177947 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105177972 TAATTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105178158 original size:15 final size:15
Alignment explanation
Indices: 105178133--105178177 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
105178123 AGTTAGATAT
*
105178133 TTTATTTTATTTTTTA
1 TTTA-TTTATTTTTAA
*
105178149 TTTATTTATTTATAA
1 TTTATTTATTTTTAA
*
105178164 TTTTTTTATTTTTA
1 TTTATTTATTTTTA
105178178 TATAATTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTATTTATTTTTAA
Found at i:105178171 original size:19 final size:20
Alignment explanation
Indices: 105178144--105178184 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
105178134 TTATTTTATT
105178144 TTTTATTTATTTATT-TATAA
1 TTTTATTTATTT-TTATATAA
105178164 TTTT-TTTATTTTTATATAA
1 TTTTATTTATTTTTATATAA
105178183 TT
1 TT
105178185 AAGTATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 2 0.10
19 14 0.70
20 4 0.20
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATTTATTTTTATATAA
Found at i:105178261 original size:16 final size:16
Alignment explanation
Indices: 105178237--105178272 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
105178227 AATTTAATAC
105178237 AAAAATCCAAAACCAT
1 AAAAATCCAAAACCAT
* *
105178253 AAAATTCCAAAATCAT
1 AAAAATCCAAAACCAT
105178269 AAAA
1 AAAA
105178273 GAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.19, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATCCAAAACCAT
Found at i:105180158 original size:43 final size:43
Alignment explanation
Indices: 105180061--105180193 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 43
105180051 TATCGAGATG
* **
105180061 TGATTACA-TGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 TGATTA-AGTGTAAGACCATGTCTGGGACATTGGCATCATATT-A
105180105 -GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
1 TGATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
** * * * *
105180147 TGATTTCGTGTAAGATCATGTCTGAGACAGTGACATCA-ATATA
1 TGATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATAT-TA
105180190 TGAT
1 TGAT
105180194 AACATATAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
42 4 0.05
43 73 0.95
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
TGATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
Found at i:105183499 original size:32 final size:32
Alignment explanation
Indices: 105183449--105183540 Score: 148
Period size: 32 Copynumber: 2.9 Consensus size: 32
105183439 CATATGGTAT
* * *
105183449 ACACAAAGTATACCTAACCTTTCCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
105183481 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
*
105183513 ATACAAAGTGTACATAACCTTTTCAAGT
1 ACACAAAGTGTACATAACCTTTTCAAGT
105183541 TTCAAGTTGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (32 bp):
ACACAAAGTGTACATAACCTTTTCAAGTGTAC
Found at i:105186193 original size:12 final size:12
Alignment explanation
Indices: 105186176--105186200 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105186166 TGTGAAAAAT
105186176 AAAATAAAATAA
1 AAAATAAAATAA
105186188 AAAATAAAATAA
1 AAAATAAAATAA
105186200 A
1 A
105186201 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:105189312 original size:46 final size:46
Alignment explanation
Indices: 105189179--105189313 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 46
105189169 TTTGACATGA
* * * * * ** *
105189179 TGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
* * *
105189225 TGCCATGGTATCTTTCAATCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
*
105189271 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCA
105189314 GAGAGCACAC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
Found at i:105191141 original size:11 final size:11
Alignment explanation
Indices: 105191125--105191180 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
105191115 CTTTATATAC
105191125 TAATAAAATAA
1 TAATAAAATAA
105191136 TAATAAAATAA
1 TAATAAAATAA
* **
105191147 TAA-AATATCT
1 TAATAAAATAA
* *
105191157 TATTAAAATAT
1 TAATAAAATAA
105191168 TAATAAAATAA
1 TAATAAAATAA
105191179 TA
1 TA
105191181 TTTATATAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
10 6 0.17
11 30 0.83
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:105191190 original size:43 final size:41
Alignment explanation
Indices: 105191125--105191208 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 41
105191115 CTTTATATAC
*
105191125 TAATAAAATAATAATAAAATAATAAAATATCTTATTAAAATAT
1 TAATAAAATAATAATAAAATAATAAAATA-ATTA-TAAAATAT
* * * *
105191168 TAATAAAATAATATTTATATAATTAAATAATTATAAAATAT
1 TAATAAAATAATAATAAAATAATAAAATAATTATAAAATAT
105191209 CAAAATATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
41 8 0.22
42 3 0.08
43 25 0.69
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (41 bp):
TAATAAAATAATAATAAAATAATAAAATAATTATAAAATAT
Found at i:105193595 original size:13 final size:13
Alignment explanation
Indices: 105193577--105193602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105193567 TGTGAAAAAT
105193577 AAAATAAAATAAA
1 AAAATAAAATAAA
105193590 AAAATAAAATAAA
1 AAAATAAAATAAA
105193603 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:105200501 original size:25 final size:25
Alignment explanation
Indices: 105200463--105200510 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
105200453 CAAGCGAGCC
105200463 ATATCAGGAAGCTCA-AGAAGAGCAT
1 ATATCAGGAAGCTCATA-AAGAGCAT
*
105200488 ATATCAGGACGCTCATAAAGAGC
1 ATATCAGGAAGCTCATAAAGAGC
105200511 TGTATTTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.17
Consensus pattern (25 bp):
ATATCAGGAAGCTCATAAAGAGCAT
Found at i:105207106 original size:129 final size:128
Alignment explanation
Indices: 105206896--105207154 Score: 455
Period size: 129 Copynumber: 2.0 Consensus size: 128
105206886 TCCTCCCAAG
*
105206896 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTCTTAGTAAAATAAAT
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTCTTAGTAAAATAAAG
* *
105206961 GGCATACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCTATTTTTT
66 GGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
* *
105207024 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATGCATTTATTTTTTAGTAAAATAAA
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATA-TAATACATTTATTTCTTAGTAAAATAAA
*
105207089 GGGCAAACTATCTCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
65 GGGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
105207153 TT
1 TT
105207155 GTTAATTTAG
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
128 36 0.29
129 88 0.71
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (128 bp):
TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTCTTAGTAAAATAAAG
GGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
Found at i:105207418 original size:7 final size:7
Alignment explanation
Indices: 105207402--105207434 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
105207392 CCAAATTAAC
105207402 AAAAAA-
1 AAAAAAG
105207408 AAAAAAG
1 AAAAAAG
105207415 AAAAAAG
1 AAAAAAG
105207422 AAAAAAG
1 AAAAAAG
105207429 AAAAAA
1 AAAAAA
105207435 TGTTGTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:105208812 original size:2 final size:2
Alignment explanation
Indices: 105208805--105208840 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
105208795 TATTCTCTGG
105208805 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
105208841 TTAAGGTACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:105214081 original size:24 final size:24
Alignment explanation
Indices: 105214047--105214101 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
105214037 CTTATAAAAA
*
105214047 CTTTAGGTTTAAAATTTGA-TTTT
1 CTTTAGATTTAAAATTTGATTTTT
105214070 CGTTTAGATTTAAAATTTGATTTTT
1 C-TTTAGATTTAAAATTTGATTTTT
105214095 CTTTAGA
1 CTTTAGA
105214102 ATAAAGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 1 0.03
24 23 0.79
25 5 0.17
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (24 bp):
CTTTAGATTTAAAATTTGATTTTT
Found at i:105214281 original size:15 final size:15
Alignment explanation
Indices: 105214236--105214301 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
105214226 ATAACTTAAA
* *
105214236 TTCAATACTTAAATT
1 TTCAACACTTAATTT
* *
105214251 TTCAATATTTAATTT
1 TTCAACACTTAATTT
*
105214266 TTCAACACTTATTTTT
1 TTCAACACTTA-ATTT
*
105214282 GTTCGACACTTAATTT
1 -TTCAACACTTAATTT
105214298 TTCA
1 TTCA
105214302 GTTTATCAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
15 25 0.61
16 6 0.15
17 10 0.24
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:105221011 original size:16 final size:16
Alignment explanation
Indices: 105220992--105221030 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
105220982 TTATAAAAAA
105220992 ATTATATTAATTATAT
1 ATTATATTAATTATAT
* *
105221008 ATTAAATTATTTATAT
1 ATTATATTAATTATAT
105221024 -TTATATT
1 ATTATATT
105221031 TAGATTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTATATTAATTATAT
Found at i:105231352 original size:2 final size:2
Alignment explanation
Indices: 105231345--105231385 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
105231335 TTTTAACTTG
105231345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105231386 AGGTTTTGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:105237065 original size:32 final size:32
Alignment explanation
Indices: 105237024--105237084 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
105237014 GGAGGGTGGC
* *
105237024 CGTGTGGGCCATA-GGATCTAGGCCAAATTGGG
1 CGTGTGGGCCACACGG-GCTAGGCCAAATTGGG
105237056 CGTGTGGGCCACACGGGCTAGGCCAAATT
1 CGTGTGGGCCACACGGGCTAGGCCAAATT
105237085 AGGCATGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.21, C:0.23, G:0.36, T:0.20
Consensus pattern (32 bp):
CGTGTGGGCCACACGGGCTAGGCCAAATTGGG
Found at i:105244263 original size:28 final size:29
Alignment explanation
Indices: 105244230--105244285 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
105244220 TTAGAGTCTC
105244230 GCCACAAAAGCGTCC-TTTAACAGAGATT
1 GCCACAAAAGCGTCCTTTTAACAGAGATT
* **
105244258 GCCACAAATGTTTCCTTTTAACAGAGAT
1 GCCACAAAAGCGTCCTTTTAACAGAGAT
105244286 AGTCATGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (29 bp):
GCCACAAAAGCGTCCTTTTAACAGAGATT
Found at i:105244278 original size:29 final size:28
Alignment explanation
Indices: 105244245--105244415 Score: 105
Period size: 29 Copynumber: 6.0 Consensus size: 28
105244235 AAAAGCGTCC
*
105244245 TTTAACAGAGATTGCCACAAATGTTTCCT
1 TTTAACAGAGATTGCCACAAAGGTTT-CT
* * ** *
105244274 TTTAACAGAGATAGTCATGAAGGATTTAT
1 TTTAACAGAGATTGCCACAAAGG-TTTCT
* * * *
105244303 ATTAACAGAGATCG-TACGAAGGATTTCT
1 TTTAACAGAGATTGCCACAAAGG-TTTCT
*
105244331 TTT-ACTAGAGATTGCCATAAAGGTTT-T
1 TTTAAC-AGAGATTGCCACAAAGGTTTCT
* **
105244358 CTTTAATAGAGATTGCCACAAATATTTCCT
1 -TTTAACAGAGATTGCCACAAAGGTTT-CT
* ** *
105244388 TTTAACAGAGGTCACCACAAAAGTTTCT
1 TTTAACAGAGATTGCCACAAAGGTTTCT
105244416 ATAGATTGTG
Statistics
Matches: 109, Mismatches: 26, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
27 3 0.03
28 45 0.41
29 57 0.52
30 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (28 bp):
TTTAACAGAGATTGCCACAAAGGTTTCT
Found at i:105249375 original size:3 final size:3
Alignment explanation
Indices: 105249367--105249483 Score: 55
Period size: 3 Copynumber: 38.0 Consensus size: 3
105249357 TATTTATTTC
* * * *
105249367 TAT TAT TAT ATAT ATAT AAAT TAT TAT TAT TAT T-T GTTT TAT TTT TAA
1 TAT TAT TAT -TAT -TAT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
** * *
105249415 CCT TAT TTT TA- TAT TAT ATAT TA- TAT AAT TAT T-T TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
105249459 TAT T-T ATAT TAT TAT TATT TAT TAT
1 TAT TAT -TAT TAT TAT TA-T TAT TAT
105249484 ATAATACTTT
Statistics
Matches: 88, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
2 8 0.09
3 59 0.67
4 21 0.24
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:105249408 original size:18 final size:18
Alignment explanation
Indices: 105249357--105249477 Score: 71
Period size: 19 Copynumber: 6.1 Consensus size: 18
105249347 TAACCCTATA
105249357 TATTTATTTCTATTATTAT
1 TATTTATTT-TATTATTAT
**
105249376 ATATATATAAATTATTATTAT
1 -TAT-T-TATTTTATTATTAT
* *
105249397 TATTTGTTTTATTTTTAACCT
1 TATTTATTTTATTATT-A--T
*
105249418 TATTTTTATATTATATATTAT
1 TA--TTTATTTTAT-TATTAT
*
105249439 ATAATTATTTTATTATATAT
1 -TATTTATTTTATTAT-TAT
*
105249459 TATTTATATTATTATTAT
1 TATTTATTTTATTATTAT
105249477 T
1 T
105249478 TATTATATAA
Statistics
Matches: 78, Mismatches: 13, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
18 12 0.15
19 18 0.23
20 17 0.22
21 14 0.18
22 5 0.06
23 9 0.12
24 3 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (18 bp):
TATTTATTTTATTATTAT
Found at i:105249445 original size:15 final size:15
Alignment explanation
Indices: 105249424--105249688 Score: 111
Period size: 14 Copynumber: 18.0 Consensus size: 15
105249414 ACCTTATTTT
105249424 TATATTA-TATATTA
1 TATATTATTATATTA
*
105249438 TATAATTATTTTATTA
1 TAT-ATTATTATATTA
105249454 TATATTATTTATATTA
1 TATATTA-TTATATTA
105249470 T-TATTATT-TATTA
1 TATATTATTATATTA
* * **
105249483 TATAATACTTTTCACGA
1 TATATTA-TTAT-ATTA
*
105249500 AATATTATTAT-TT-
1 TATATTATTATATTA
*
105249513 TACATTATTAT-TTA
1 TATATTATTATATTA
105249527 TATATTA-T-TATTA
1 TATATTATTATATTA
* * *
105249540 TATTTTTACTTGTATAA
1 TA-TATTA-TTATATTA
105249557 TATATTTATTAATCATT-
1 TATA-TTATT-AT-ATTA
105249574 TATATATATTATA-TA
1 TATAT-TATTATATTA
* *
105249589 T-TATTTTTACA-TA
1 TATATTATTATATTA
*
105249602 TATACTT-TCATATTA
1 TATA-TTATTATATTA
105249617 TATATTA-TA-ATTA
1 TATATTATTATATTA
* *
105249630 T-TTTATATTATGTTA
1 TATAT-TATTATATTA
*
105249645 T-TTTTA-TACTATTA
1 TATATTATTA-TATTA
105249659 TATATT-TT-TATCTA
1 TATATTATTATAT-TA
105249673 TATATTATTATCATTA
1 TATATTATTAT-ATTA
105249689 AACGTTTTAA
Statistics
Matches: 192, Mismatches: 27, Indels: 62
0.68 0.10 0.22
Matches are distributed among these distances:
12 3 0.02
13 43 0.22
14 48 0.25
15 38 0.20
16 31 0.16
17 27 0.14
18 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (15 bp):
TATATTATTATATTA
Found at i:105249483 original size:18 final size:18
Alignment explanation
Indices: 105249388--105249485 Score: 74
Period size: 18 Copynumber: 5.2 Consensus size: 18
105249378 ATATATAAAT
* *
105249388 TATTATTATTATTTGTTT
1 TATTATTATTATTTATTA
*
105249406 TATTTTTAACCTTATTT-TTA
1 TATTATT-A--TTATTTATTA
*
105249426 TATTATATATTATATAATTA
1 TATTAT-TATTAT-TTATTA
*
105249446 TTTTATTA-TATATTATTTA
1 TATTATTATTAT-TTA-TTA
105249465 TATTATTATTATTTATTA
1 TATTATTATTATTTATTA
105249483 TAT
1 TAT
105249486 AATACTTTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
18 22 0.34
19 17 0.26
20 19 0.29
21 7 0.11
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (18 bp):
TATTATTATTATTTATTA
Found at i:105249536 original size:17 final size:17
Alignment explanation
Indices: 105249516--105249683 Score: 64
Period size: 17 Copynumber: 9.5 Consensus size: 17
105249506 ATTATTTTAC
105249516 ATTATTATTTATATATT
1 ATTATTATTTATATATT
*
105249533 ATTATTATATT-TTTACTTGT
1 ATTATTAT-TTATATA--T-T
* *
105249553 ATAATATATTTAT-TAATC
1 ATTAT-TATTTATAT-ATT
105249571 ATTTATATATATTATATATT
1 A-TTAT-TAT-TTATATATT
* **
105249591 ATTTTTACATATATACTT
1 ATTATTATTTATATA-TT
*
105249609 -TCA-TA-TTATATATT
1 ATTATTATTTATATATT
*
105249623 ATAATTATTT-TATATT
1 ATTATTATTTATATATT
105249639 ATGTTATT-TTTATACTATT
1 A--TTATTATTTATA-TATT
*
105249658 ATATATT-TTTATCTATAT
1 AT-TATTATTTATATAT-T
105249676 ATTATTAT
1 ATTATTAT
105249684 CATTAAACGT
Statistics
Matches: 116, Mismatches: 14, Indels: 41
0.68 0.08 0.24
Matches are distributed among these distances:
14 2 0.02
15 8 0.07
16 11 0.09
17 31 0.27
18 26 0.22
19 17 0.15
20 15 0.13
21 6 0.05
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (17 bp):
ATTATTATTTATATATT
Found at i:105249536 original size:30 final size:30
Alignment explanation
Indices: 105249418--105249666 Score: 102
Period size: 30 Copynumber: 8.0 Consensus size: 30
105249408 TTTTTAACCT
*
105249418 TATTTTTATATTATATATTATATAATTATTTTA
1 TATTATTAT-TTATATATTAT-T-ATTATTTTA
*
105249451 TTATATATTATTTATATTATTATTATTTATTATA
1 -TAT-TATTATTTATA-TATTATTA-TTATTTTA
* * * *
105249485 TAATACTT-TTCACGA-AATATTATTATTTTA
1 TATTA-TTATTTA-TATATTATTATTATTTTA
* *
105249515 CATTATTATTTATATATTATTATTATATT-
1 TATTATTATTTATATATTATTATTATTTTA
* * *
105249544 T-TTACTTGTATAATATATTTATTAATCA-TTTA
1 TATTA-TTAT-TTATATA-TTATT-ATTATTTTA
* * *
105249576 TA-TA-TA-TTATATATTATTTTTACATATA
1 TATTATTATTTATATATTATTATTA-TTTTA
* *
105249604 TACTT-TCATATTATATATTATAATTATTTTA
1 TA-TTATTAT-TTATATATTATTATTATTTTA
* *
105249635 TATTATGTTATTTTTATACTATTATATATTTT
1 TATTA--TTATTTATATATTATTAT-TATTTT
105249667 TATCTATATA
Statistics
Matches: 159, Mismatches: 32, Indels: 49
0.66 0.13 0.20
Matches are distributed among these distances:
26 2 0.01
27 5 0.03
28 14 0.09
29 6 0.04
30 36 0.23
31 18 0.11
32 36 0.23
33 15 0.09
34 16 0.10
35 11 0.07
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (30 bp):
TATTATTATTTATATATTATTATTATTTTA
Found at i:105249566 original size:58 final size:59
Alignment explanation
Indices: 105249504--105249668 Score: 135
Period size: 58 Copynumber: 2.7 Consensus size: 59
105249494 TCACGAAATA
105249504 TTATTATTTTACATTATTATTTATATATTATTATTATATTTTTACTTGT-ATA-ATATAT
1 TTATTATTTTACATTATTATTTATATATTATTATTATATTTTTACTT-TCATATATATAT
* * * * *
105249562 TTATTA--AT-CATTTATATATATTATATATTATTTTTACATATATACTTTCATATTATATAT
1 TTATTATTTTACA-TTAT-TAT-TTATATATTATTATTATATTTTTACTTTCATA-TATATAT
* * *
105249622 TATAATTATTTTATATTATGTTATTTTTATACTATTA-TATATTTTTA
1 T-T-ATTATTTTACATTA--TTATTTATATATTATTATTATATTTTTA
105249669 TCTATATATT
Statistics
Matches: 81, Mismatches: 13, Indels: 21
0.70 0.11 0.18
Matches are distributed among these distances:
55 2 0.02
56 5 0.06
57 4 0.05
58 32 0.40
60 7 0.09
61 1 0.01
62 4 0.05
63 7 0.09
64 14 0.17
65 4 0.05
66 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (59 bp):
TTATTATTTTACATTATTATTTATATATTATTATTATATTTTTACTTTCATATATATAT
Found at i:105249636 original size:16 final size:16
Alignment explanation
Indices: 105249612--105249681 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
105249602 TATACTTTCA
*
105249612 TATTATATATTATAAT
1 TATTTTATATTATAAT
*
105249628 TATTTTATATTAT-GT
1 TATTTTATATTATAAT
* *
105249643 TATTTTTATACTATTAT
1 TA-TTTTATATTATAAT
105249660 ATATTTT-TATCTATATAT
1 -TATTTTATAT-TATA-AT
105249678 TATT
1 TATT
105249682 ATCATTAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
15 3 0.07
16 24 0.56
17 12 0.28
18 4 0.09
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (16 bp):
TATTTTATATTATAAT
Found at i:105249959 original size:18 final size:19
Alignment explanation
Indices: 105249938--105249984 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
105249928 TTCTAAACCA
105249938 ATATATTTTTTATT-TTAT
1 ATATATTTTTTATTCTTAT
* * *
105249956 ATATAATTATTATTCTTTT
1 ATATATTTTTTATTCTTAT
*
105249975 ATAAATTTTT
1 ATATATTTTT
105249985 GTTATTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATATATTTTTTATTCTTAT
Found at i:105252854 original size:13 final size:13
Alignment explanation
Indices: 105252836--105252862 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
105252826 AAAGACATTG
105252836 ATACTAAATCGAT
1 ATACTAAATCGAT
105252849 ATACTAAATCGAT
1 ATACTAAATCGAT
105252862 A
1 A
105252863 CTTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ATACTAAATCGAT
Found at i:105254626 original size:11 final size:12
Alignment explanation
Indices: 105254601--105254630 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
105254591 GGAAGGGAAT
105254601 AAAAGAAATTAA
1 AAAAGAAATTAA
105254613 AAAAGAAATTAA
1 AAAAGAAATTAA
105254625 AAAAGA
1 AAAAGA
105254631 GGGGGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (12 bp):
AAAAGAAATTAA
Found at i:105267986 original size:46 final size:46
Alignment explanation
Indices: 105267934--105268482 Score: 733
Period size: 46 Copynumber: 12.0 Consensus size: 46
105267924 AGTGTGCTCT
* *
105267934 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
105267980 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
105268026 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
105268072 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
105268118 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
105268164 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** **
105268210 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *** *
105268256 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
105268302 GTGACATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** ** *
105268348 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
105268394 GTGACATGAAATGTGTAAGACCATGGTTGAAAAATACCATGG-AAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
105268439 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
105268483 TCATGTCAAA
Statistics
Matches: 460, Mismatches: 41, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
44 1 0.00
45 36 0.08
46 423 0.92
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:105268789 original size:16 final size:17
Alignment explanation
Indices: 105268768--105268800 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105268758 ATGATGGTGC
105268768 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
*
105268784 ATGAAATGATTGCTATA
1 ATGAAATGATTGATATA
105268801 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:105280343 original size:15 final size:16
Alignment explanation
Indices: 105280316--105280371 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
105280306 AATAAAAATG
* *
105280316 TTTTAGATAATTTCTA
1 TTTTAGATCATTTATA
*
105280332 TTTT-GGTCATTTATA
1 TTTTAGATCATTTATA
105280347 TTTTAGATCATTTATA
1 TTTTAGATCATTTATA
105280363 TTTTA-ATCA
1 TTTTAGATCA
105280372 CTCTTCGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 16 0.46
16 19 0.54
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (16 bp):
TTTTAGATCATTTATA
Found at i:105281783 original size:16 final size:16
Alignment explanation
Indices: 105281759--105281792 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
105281749 CATTATTCCA
105281759 AACAAGAGTTGTTCTC
1 AACAAGAGTTGTTCTC
*
105281775 AACAGGAGTTGTTCTC
1 AACAAGAGTTGTTCTC
105281791 AA
1 AA
105281793 GTAATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (16 bp):
AACAAGAGTTGTTCTC
Found at i:105282154 original size:23 final size:23
Alignment explanation
Indices: 105282124--105282176 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
105282114 AATTTACCCT
105282124 AATAATAAATGGTTTCCAATAAG
1 AATAATAAATGGTTTCCAATAAG
105282147 AATAATAAATGGTTTCCAATAAG
1 AATAATAAATGGTTTCCAATAAG
105282170 AATAATA
1 AATAATA
105282177 TTCTTATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (23 bp):
AATAATAAATGGTTTCCAATAAG
Found at i:105288200 original size:17 final size:18
Alignment explanation
Indices: 105288178--105288221 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
105288168 TAATAAGAGT
105288178 TAATATTAAAT-TTAATC
1 TAATATTAAATATTAATC
* *
105288195 TAATATT-TATATTAATT
1 TAATATTAAATATTAATC
105288212 TAATATTAAA
1 TAATATTAAA
105288222 ATGATTAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATTAAATATTAATC
Found at i:105292216 original size:26 final size:26
Alignment explanation
Indices: 105292147--105292281 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
105292137 TGATACAAAT
105292147 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105292173 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105292198 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
105292224 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
105292250 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105292276 TGATAA
1 TGATAA
105292282 GAATTCATGT
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
25 25 0.24
26 81 0.76
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:105298013 original size:26 final size:26
Alignment explanation
Indices: 105297951--105298082 Score: 200
Period size: 26 Copynumber: 5.2 Consensus size: 26
105297941 TGATACAAAT
105297951 TGATAATAGGTTAGGT-AATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
105297975 TGAT-AT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105297999 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
105298025 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
105298051 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105298077 TGATAA
1 TGATAA
105298083 GAATTCATGT
Statistics
Matches: 102, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
22 8 0.08
23 8 0.08
24 10 0.10
25 2 0.02
26 74 0.73
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:105301277 original size:12 final size:12
Alignment explanation
Indices: 105301260--105301290 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
105301250 ACTCGGGGAA
105301260 GAGGCCGTGGTC
1 GAGGCCGTGGTC
105301272 GAGGCCGTGGTC
1 GAGGCCGTGGTC
105301284 GAGGCCG
1 GAGGCCG
105301291 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:105306187 original size:26 final size:26
Alignment explanation
Indices: 105306158--105306267 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
105306148 TGATACAAAT
105306158 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105306184 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105306210 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105306236 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105306262 TGATAA
1 TGATAA
105306268 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105309209 original size:129 final size:130
Alignment explanation
Indices: 105308908--105309218 Score: 357
Period size: 129 Copynumber: 2.4 Consensus size: 130
105308898 GGTGCTACAT
* * * ** ** * *
105308908 AAATAATCAAATTTTCCTTTAAAATTTCGTTCGCGTTTTCTAAA--CCTTAAAACAAAAGCGATG
1 AAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATTCCTTAAAACAAAAGCAACG
* * *
105308971 TTTGATGTTTAGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCAATTTCTCGTTTGTTCA
66 TTCGAAGTTTAGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCA
* * * ** * *
105309036 AAATGATCGCATATTCCTTTGGAATTTCACTCATG-TTTAAAAATTCCTTAAAACGAAGGCAACG
1 AAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATTCCTTAAAACAAAAGCAACG
* * *
105309100 TTCGAAGTTTTGAGATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTC-CTGTTTGTTC
66 TTCGAAGTTTAGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTC-GTTTGTTC
105309164 -
130 A
*
105309164 AAATAATTGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATT-C-TAAAACAA
1 AAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATTCCTTAAAACAA
105309219 GACAATGTTC
Statistics
Matches: 150, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
127 13 0.09
128 58 0.39
129 79 0.53
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (130 bp):
AAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATTCCTTAAAACAAAAGCAACG
TTCGAAGTTTAGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCA
Found at i:105309843 original size:19 final size:19
Alignment explanation
Indices: 105309819--105309963 Score: 221
Period size: 19 Copynumber: 7.9 Consensus size: 19
105309809 ATAATCTTCA
*
105309819 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
105309838 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105309857 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105309874 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
105309892 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105309911 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
105309928 ATAAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105309946 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
105309964 AGATATGATT
Statistics
Matches: 116, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
16 1 0.01
17 30 0.26
18 30 0.26
19 55 0.47
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:105309857 original size:14 final size:15
Alignment explanation
Indices: 105309840--105309895 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
105309830 TCTTAAATAT
105309840 GATATG-CAATCTTA
1 GATATGACAATCTTA
105309854 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
105309871 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
105309889 GATATGA
1 GATATGA
105309896 TATGTAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:105309884 original size:54 final size:54
Alignment explanation
Indices: 105309819--105309963 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
105309809 ATAATCTTCA
*
105309819 ATGATATGCAATCTTAAATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
* *
105309874 ATGATTGCAATCTTAGATATGATATGTAATCTTAGATATGATATAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
105309928 ATAATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
105309964 AGATATGATT
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
54 80 0.94
55 5 0.06
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
Done.