Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 35 of 378
Found at i:8747848 original size:46 final size:46
Alignment explanation
Indices: 8747796--8748070 Score: 363
Period size: 46 Copynumber: 6.0 Consensus size: 46
8747786 AGTGTGCTCT
*
8747796 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8747842 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8747888 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8747934 GTGACATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * ** *
8747980 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
8748027 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCA
8748071 TCATGTCGAA
Statistics
Matches: 209, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 170 0.81
47 38 0.18
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8758554 original size:29 final size:28
Alignment explanation
Indices: 8758500--8758554 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
8758490 ACAATATCAA
* *
8758500 AAAAATAATAACAAAATAGTAGCAAAAC
1 AAAAATAATAACAAAATAGCAACAAAAC
8758528 AAAAAT-ATAACAATAAATAGCAACAAA
1 AAAAATAATAAC-A-AAATAGCAACAAA
8758555 CAACAGCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 5 0.22
28 7 0.30
29 11 0.48
ACGTcount: A:0.69, C:0.11, G:0.05, T:0.15
Consensus pattern (28 bp):
AAAAATAATAACAAAATAGCAACAAAAC
Found at i:8763805 original size:23 final size:23
Alignment explanation
Indices: 8763762--8763807 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8763752 CAAGTTGAGG
*
8763762 CCATGTGGGGTTATATAACACAA
1 CCATGTGGGGCTATATAACACAA
* *
8763785 CCATGTGGGGCTGTATCACACAA
1 CCATGTGGGGCTATATAACACAA
8763808 TCGTGTCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (23 bp):
CCATGTGGGGCTATATAACACAA
Found at i:8766347 original size:17 final size:17
Alignment explanation
Indices: 8766288--8766347 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
8766278 GTTGTATTAT
*
8766288 TTACATTA-TATTATTG
1 TTACATTATTATTATTC
8766304 TTAGCATTATTATTATTCC
1 TTA-CATTATTATTATT-C
*
8766323 TTA-GTTATTATTATT-
1 TTACATTATTATTATTC
8766338 TTATCATTAT
1 TTA-CATTAT
8766348 CTTCCATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 20 0.56
18 7 0.19
19 3 0.08
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.58
Consensus pattern (17 bp):
TTACATTATTATTATTC
Found at i:8766814 original size:26 final size:25
Alignment explanation
Indices: 8766748--8766814 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
8766738 TTCTCTTTTC
* * *
8766748 ATATCATTTATTCTAAATATTTTAT
1 ATATTATTTATTTTAAATATTATAT
* *
8766773 ACATTATTTATGTTAAATCATTATAT
1 ATATTATTTATTTTAAAT-ATTATAT
8766799 ATATTATTTATTTTAA
1 ATATTATTTATTTTAA
8766815 GTTTTCATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 14 0.41
26 20 0.59
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.55
Consensus pattern (25 bp):
ATATTATTTATTTTAAATATTATAT
Found at i:8768504 original size:46 final size:46
Alignment explanation
Indices: 8768413--8768507 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 46
8768403 ATAATGCGTT
* * * * **
8768413 ACCCATCAGGGTTAAACCTACATGGATTGAATAATAGTGTTTGGTC
1 ACCCATCAGGATTAAACCTACACGAATTGAATAATAGCGCCTGGTC
*
8768459 ACCCGTCAGGATTAAACCTACACGAATTGAATAATAGCGCCTGGTC
1 ACCCATCAGGATTAAACCTACACGAATTGAATAATAGCGCCTGGTC
8768505 ACC
1 ACC
8768508 TGTTATGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (46 bp):
ACCCATCAGGATTAAACCTACACGAATTGAATAATAGCGCCTGGTC
Found at i:8770469 original size:26 final size:26
Alignment explanation
Indices: 8770439--8770490 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8770429 TCTATTGAAG
8770439 ATAGACTCATTCAGGATTCTAAAAAT
1 ATAGACTCATTCAGGATTCTAAAAAT
8770465 ATAGACTCATTCAGGATTCTAAAAAT
1 ATAGACTCATTCAGGATTCTAAAAAT
8770491 TTAAATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (26 bp):
ATAGACTCATTCAGGATTCTAAAAAT
Found at i:8772431 original size:75 final size:75
Alignment explanation
Indices: 8772326--8772472 Score: 183
Period size: 75 Copynumber: 2.0 Consensus size: 75
8772316 ACCTAGAGGA
* * * * *
8772326 GTTTGCGCCTAGCACTAGTTGAGTTAACCGA-TAGTATTGAATGTGAG-CCTAGCTCTAGTTGGA
1 GTTTACGCCCAGCACTAGTTGAGATAACCGACCA-TATTAAATGTGAGTCC-AGCTCTAGTTGGA
8772389 TAAACCAACAAT
64 TAAACCAACAAT
*
8772401 GTTTACGCCCAGCACTAG-TGGGATATACCGACCATATTAAATGTGAGTCCAGCTCTAGTTGGAT
1 GTTTACGCCCAGCACTAGTTGAGATA-ACCGACCATATTAAATGTGAGTCCAGCTCTAGTTGGAT
*
8772465 GAACCAAC
65 AAACCAAC
8772473 GGTATTTGCA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
74 5 0.08
75 54 0.87
76 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (75 bp):
GTTTACGCCCAGCACTAGTTGAGATAACCGACCATATTAAATGTGAGTCCAGCTCTAGTTGGATA
AACCAACAAT
Found at i:8772488 original size:75 final size:75
Alignment explanation
Indices: 8772360--8772507 Score: 181
Period size: 75 Copynumber: 2.0 Consensus size: 75
8772350 TAACCGATAG
* * * *
8772360 TATTGAATGTGAGCCTAGCTCTAGTTGGATAAACCAACAATGTTTACGCCCAGCACTAGTGGGAT
1 TATTAAATGTGAGCCTAGCTCTAGTTGGATAAACCAACAATATTTACACCCAGCACTAGTCGGAT
*
8772425 ATACCGACCA
66 AAACCGACCA
* ** * * *
8772435 TATTAAATGTGAGTCC-AGCTCTAGTTGGATGAACCAACGGTATTTGCATCCAGCGCTAGTCGGA
1 TATTAAATGTGAG-CCTAGCTCTAGTTGGATAAACCAACAATATTTACACCCAGCACTAGTCGGA
8772499 TAAACCGAC
65 TAAACCGAC
8772508 GATTGTGTGC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
75 59 0.97
76 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (75 bp):
TATTAAATGTGAGCCTAGCTCTAGTTGGATAAACCAACAATATTTACACCCAGCACTAGTCGGAT
AAACCGACCA
Found at i:8774182 original size:15 final size:17
Alignment explanation
Indices: 8774150--8774182 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8774140 CGGGTTTTAC
8774150 TTTCAACATATACCATT
1 TTTCAACATATACCATT
8774167 TTTCAACA-AT-CCATT
1 TTTCAACATATACCATT
8774182 T
1 T
8774183 CAATTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 2 0.12
17 8 0.50
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTCAACATATACCATT
Found at i:8774414 original size:6 final size:6
Alignment explanation
Indices: 8774403--8774427 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8774393 TAAGATTCAA
8774403 AATATC AATATC AATATC AATATC A
1 AATATC AATATC AATATC AATATC A
8774428 TAATAACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATC
Found at i:8775401 original size:5 final size:5
Alignment explanation
Indices: 8775391--8775424 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
8775381 CACGATTCAC
8775391 TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATT
8775425 TAACTCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:8775842 original size:126 final size:126
Alignment explanation
Indices: 8775687--8775937 Score: 385
Period size: 126 Copynumber: 2.0 Consensus size: 126
8775677 TCTATATTTA
* *
8775687 CAAAAAATATACATATATTTACATTCTCAATGTCATGCTCATACTATCTACCATACAATTCCGAC
1 CAAAAAATATACATATACTTACATTCTCAATGTCATGCTAATACTATCTACCATACAATTCCGAC
* * *
8775752 AACTCGAACGAGTTACATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATT
66 AAATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATT
* * * **
8775813 CAAAAAGTATATATATACTTACATTCTCAATGTCATGTTAATACTATCTATTATACAATTCCGAC
1 CAAAAAATATACATATACTTACATTCTCAATGTCATGCTAATACTATCTACCATACAATTCCGAC
* * *
8775878 AAATCGGACAAGTTAAATGGTTTCTCAACCAGTTATCTATGCAACTACAATGAAAAACAT
66 AAATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACAT
8775938 GTTCGCAAAC
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 112 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (126 bp):
CAAAAAATATACATATACTTACATTCTCAATGTCATGCTAATACTATCTACCATACAATTCCGAC
AAATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATT
Found at i:8780724 original size:21 final size:21
Alignment explanation
Indices: 8780698--8780738 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8780688 ATCTGCTCAA
* *
8780698 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8780719 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8780739 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8785630 original size:39 final size:38
Alignment explanation
Indices: 8785565--8785667 Score: 111
Period size: 39 Copynumber: 2.6 Consensus size: 38
8785555 CTATAAATTA
*
8785565 AAAAATTCATAAAAATTATTAG-AAATTTATAAATAGTTATT
1 AAAAATT-ATAAAAAATA-TAGAAAATTTATAAAT-GTTA-T
* *
8785606 TAAAA-TATAAAAAATATAGAAAATTTTTAAATGTTAT
1 AAAAATTATAAAAAATATAGAAAATTTATAAATGTTAT
*
8785643 AAAAATTTTAGAAAAATATAGAAAA
1 AAAAATTATA-AAAAATATAGAAAA
8785668 ATATTATACA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
37 5 0.09
38 10 0.19
39 34 0.63
40 1 0.02
41 4 0.07
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (38 bp):
AAAAATTATAAAAAATATAGAAAATTTATAAATGTTAT
Found at i:8785684 original size:32 final size:33
Alignment explanation
Indices: 8785634--8785695 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
8785624 GAAAATTTTT
*
8785634 AAATGTTATAAAAATTTTAG-AAAAATATAGAA
1 AAATATTATAAAAATTTTAGAAAAAATATAGAA
* *
8785666 AAATATTATACAATTTTTAGAAAAAATATA
1 AAATATTATAAAAATTTTAGAAAAAATATA
8785696 AAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.65
33 9 0.35
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (33 bp):
AAATATTATAAAAATTTTAGAAAAAATATAGAA
Found at i:8785700 original size:20 final size:22
Alignment explanation
Indices: 8785661--8785703 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
8785651 TAGAAAAATA
*
8785661 TAGAAAAATATTATACAATTTT
1 TAGAAAAATATTATAAAATTTT
8785683 TAGAAAAA-A-TATAAAATTTT
1 TAGAAAAATATTATAAAATTTT
8785703 T
1 T
8785704 TAAAAAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 1 0.05
22 8 0.40
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (22 bp):
TAGAAAAATATTATAAAATTTT
Found at i:8815835 original size:39 final size:39
Alignment explanation
Indices: 8815791--8815938 Score: 242
Period size: 39 Copynumber: 3.8 Consensus size: 39
8815781 ATGAGATTGA
8815791 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTAG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTAG
* *
8815830 AAATATATCCGTACATGAGGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTAG
* * *
8815869 AAAAACATCCGGACATGAGATCCGCAGGCTATATGCTAG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTAG
*
8815908 AAATATATCCGGACTTGAGGTCCGCAGGCTA
1 AAATATATCCGGACATGAGGTCCGCAGGCTA
8815939 CGTGTTGGAA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (39 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTAG
Found at i:8815975 original size:78 final size:78
Alignment explanation
Indices: 8815797--8815984 Score: 209
Period size: 78 Copynumber: 2.4 Consensus size: 78
8815787 TTGAAAATAT
* ** * * *
8815797 ATCCGGACATGAGGTCCGCAGGCTATATGCTAGAAATATATCCGTACATGAGGTCCGCAGGCTAT
1 ATCCGGACATAAGACCCACAGGCTATATGCTAGAAATATATCCGGACATGAGGTCCGCAGGCTAC
8815862 ATGCTGGAAAAAC
66 ATGCTGGAAAAAC
* * * *
8815875 ATCCGGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTAC
1 ATCCGGACATAAGACCCACAGGCTATATGCTAGAAATATATCCGGACATGAGGTCCGCAGGCTAC
* * *
8815940 GTGTTGGAAAAAT
66 ATGCTGGAAAAAC
* **
8815953 ATCTGG-GTTAAAGACCCACAGGCT-TATGCTAG
1 ATCCGGACAT-AAGACCCACAGGCTATATGCTAG
8815985 TAATGTATTC
Statistics
Matches: 96, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
77 9 0.09
78 87 0.91
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (78 bp):
ATCCGGACATAAGACCCACAGGCTATATGCTAGAAATATATCCGGACATGAGGTCCGCAGGCTAC
ATGCTGGAAAAAC
Found at i:8817178 original size:19 final size:21
Alignment explanation
Indices: 8817154--8817192 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
8817144 CCTAATACCT
8817154 CATTTTCAA-T-AACCACTTG
1 CATTTTCAACTGAACCACTTG
*
8817173 CATTTTGAACTGAACCACTT
1 CATTTTCAACTGAACCACTT
8817193 ATACTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 1 0.06
21 8 0.47
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (21 bp):
CATTTTCAACTGAACCACTTG
Found at i:8817816 original size:11 final size:10
Alignment explanation
Indices: 8817785--8817827 Score: 61
Period size: 11 Copynumber: 4.2 Consensus size: 10
8817775 ACAGCGTAAA
8817785 TCAATAAATT
1 TCAATAAATT
8817795 TCAA-AAATT
1 TCAATAAATT
8817804 TCAATATAATT
1 TCAATA-AATT
8817815 TCAATATAATT
1 TCAATA-AATT
8817826 TC
1 TC
8817828 TTAAATTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.29
10 5 0.16
11 17 0.55
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42
Consensus pattern (10 bp):
TCAATAAATT
Found at i:8819340 original size:22 final size:22
Alignment explanation
Indices: 8819315--8819360 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8819305 ATATTCAAGC
*
8819315 AATAACAATAAAATAATAATAA
1 AATAACAATAAAATAATAACAA
* *
8819337 AATAATAATAAAATAGTAACAA
1 AATAACAATAAAATAATAACAA
8819359 AA
1 AA
8819361 ATAGGGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (22 bp):
AATAACAATAAAATAATAACAA
Found at i:8819360 original size:11 final size:11
Alignment explanation
Indices: 8819315--8819351 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
8819305 ATATTCAAGC
*
8819315 AATAACAATAA
1 AATAATAATAA
8819326 AATAATAATAA
1 AATAATAATAA
8819337 AATAATAATAA
1 AATAATAATAA
8819348 AATA
1 AATA
8819352 GTAACAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAATAATAA
Found at i:8830465 original size:16 final size:16
Alignment explanation
Indices: 8830444--8830480 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8830434 AATATTAAAC
8830444 AAATTTATACATAATT
1 AAATTTATACATAATT
*
8830460 AAATTTGTACATAATT
1 AAATTTATACATAATT
*
8830476 TAATT
1 AAATT
8830481 ATTTTAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (16 bp):
AAATTTATACATAATT
Found at i:8832787 original size:30 final size:30
Alignment explanation
Indices: 8832752--8832809 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
8832742 TAGGCACTTC
*
8832752 CACACGGGT-GATCCAGACGCCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
8832782 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
8832810 CATGGCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.16
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:8835672 original size:8 final size:8
Alignment explanation
Indices: 8835659--8835687 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8835649 TTATGTTTAG
8835659 TATATTAT
1 TATATTAT
8835667 TATATTAT
1 TATATTAT
8835675 TATATTAT
1 TATATTAT
8835683 TATAT
1 TATAT
8835688 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:8835685 original size:19 final size:19
Alignment explanation
Indices: 8835661--8835748 Score: 71
Period size: 19 Copynumber: 4.7 Consensus size: 19
8835651 ATGTTTAGTA
8835661 TATTATTATATTATTATAT
1 TATTATTATATTATTATAT
* **
8835680 TATTA-TATAATAAAGATAT
1 TATTATTAT-ATTATTATAT
8835699 T-TTATGT-T-TTAATTATAT
1 TATTAT-TATATT-ATTATAT
8835717 TA-TATTATATTATATATAT
1 TATTATTATATTAT-TATAT
8835736 TA-TATTATATTAT
1 TATTATTATATTAT
8835749 ATAAATGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.04
18 18 0.33
19 34 0.62
20 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TATTATTATATTATTATAT
Found at i:8835720 original size:5 final size:5
Alignment explanation
Indices: 8835710--8835750 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
8835700 TTATGTTTTA
8835710 ATTAT ATTAT ATTAT ATTAT A-TAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
8835751 AAATGAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:8835749 original size:19 final size:19
Alignment explanation
Indices: 8835712--8835751 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8835702 ATGTTTTAAT
8835712 TATATTATATTATATTATA
1 TATATTATATTATATTATA
8835731 TATATTATATTATATTATA
1 TATATTATATTATATTATA
8835750 TA
1 TA
8835752 AATGAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:8837025 original size:15 final size:15
Alignment explanation
Indices: 8837005--8837061 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
8836995 CGATGAATTT
8837005 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
8837020 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
8837035 ATTGAATTTATATTG
1 ATTGAATTTATATTG
8837050 ATTGAA-TTATAT
1 ATTGAATTTATAT
8837062 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:8837464 original size:23 final size:23
Alignment explanation
Indices: 8837434--8837520 Score: 101
Period size: 21 Copynumber: 4.0 Consensus size: 23
8837424 CCTTTACCGA
* *
8837434 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
8837457 TCAGGCACCTCATGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
8837478 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
8837500 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
8837521 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 34 0.62
22 2 0.04
23 19 0.35
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:8850039 original size:35 final size:35
Alignment explanation
Indices: 8850012--8850177 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
8850002 CATGGCAAAG
*
8850012 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8850047 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8850082 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
8850122 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
8850157 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
8850178 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:8850131 original size:75 final size:75
Alignment explanation
Indices: 8850012--8850182 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
8850002 CATGGCAAAG
** *
8850012 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
8850071 CCATACTGAGC
65 CCATACCGAGC
8850082 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
8850147 CATACCGAGT
66 CATACCGAGC
**
8850157 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
8850183 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:8857659 original size:74 final size:75
Alignment explanation
Indices: 8857511--8857676 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
8857501 GCAAAGTGTG
** *
8857511 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
8857571 CTGAGCTGTG
66 CCGAGCTGAA
8857581 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
8857644 ACCGAGTTGAA
65 ACCGAGCTGAA
8857655 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
8857677 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:8857674 original size:35 final size:35
Alignment explanation
Indices: 8857511--8857674 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
8857501 GCAAAGTGTG
* **
8857511 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
8857546 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
8857581 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
8857620 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
8857655 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
8857675 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:8860303 original size:21 final size:21
Alignment explanation
Indices: 8860278--8860317 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8860268 AGAAGACAAA
8860278 TATATCGCTTAAAGAAAGCTT
1 TATATCGCTTAAAGAAAGCTT
* * *
8860299 TATATGGTTTAAAGCAAGC
1 TATATCGCTTAAAGAAAGC
8860318 CCCAAGAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
TATATCGCTTAAAGAAAGCTT
Found at i:8860887 original size:25 final size:25
Alignment explanation
Indices: 8860859--8860909 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8860849 AAATTTTGAG
8860859 ATATGTCAAAGGTACAATAGATGTA
1 ATATGTCAAAGGTACAATAGATGTA
*
8860884 ATATGTCAAATGTACAATAGATGTA
1 ATATGTCAAAGGTACAATAGATGTA
8860909 A
1 A
8860910 CACTTTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (25 bp):
ATATGTCAAAGGTACAATAGATGTA
Found at i:8861391 original size:42 final size:42
Alignment explanation
Indices: 8861345--8861440 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
8861335 ACGGCCAAAC
* *
8861345 CACACGCTCGTGCGCATGGCCATGTGTCGCACACGACTGAGA
1 CACACGCTCGTGCGCATGGCCATGTGTCACACACCACTGAGA
* **
8861387 CACACGTTCGTGCGCATGGCTGTGTGTCACACACCACTGAGA
1 CACACGCTCGTGCGCATGGCCATGTGTCACACACCACTGAGA
*
8861429 CACACGCCCGTG
1 CACACGCTCGTG
8861441 TGGATGAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
CACACGCTCGTGCGCATGGCCATGTGTCACACACCACTGAGA
Found at i:8862475 original size:21 final size:23
Alignment explanation
Indices: 8862424--8862481 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
8862414 ATCCAGGCTA
*
8862424 AAACAGGAAACTCATAAGAGTTT
1 AAACAGGAAACTCATAAGAGCTT
*
8862447 AAAACAGGAAACTCAT-TGAGCTT
1 -AAACAGGAAACTCATAAGAGCTT
*
8862470 -AACAGGTAACTC
1 AAACAGGAAACTC
8862482 CAAAGAGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.35
23 5 0.16
24 15 0.48
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (23 bp):
AAACAGGAAACTCATAAGAGCTT
Found at i:8864828 original size:2 final size:2
Alignment explanation
Indices: 8864821--8864861 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8864811 TAATTGAGAA
8864821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8864862 GTTAATTTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8868049 original size:3 final size:3
Alignment explanation
Indices: 8868034--8868065 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8868024 TAATGAGACA
*
8868034 TCC TCC TCT TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
8868066 ATCAGCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (3 bp):
TCC
Found at i:8879005 original size:46 final size:46
Alignment explanation
Indices: 8878778--8879004 Score: 312
Period size: 46 Copynumber: 4.9 Consensus size: 46
8878768 TTTGACATGA
* * * * * ** * *
8878778 TGCCATAGTGTCTTTTAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
8878824 TGCCATAGTATCTTTCAACCATGGTCTTACACA-TTCTATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-ATATCACGT
*
8878870 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* * *
8878916 TGCCATGGTATCTTTCAACTATTGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
8878962 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
8879005 GAAAGCACAC
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 2 0.01
46 159 0.98
47 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:8881015 original size:11 final size:11
Alignment explanation
Indices: 8880999--8881046 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
8880989 CTTTATATAC
8880999 TAATAAAATAA
1 TAATAAAATAA
*
8881010 TAATAAAATATCT
1 TAATAAAATA--A
* *
8881023 TATTAAAATAT
1 TAATAAAATAA
8881034 TAATAAAATAA
1 TAATAAAATAA
8881045 TA
1 TA
8881047 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:8882506 original size:24 final size:24
Alignment explanation
Indices: 8882474--8882521 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8882464 TTTCTATACA
*
8882474 TGTATGCTCTTGCAAGCCATAATC
1 TGTATGCTCTTACAAGCCATAATC
*
8882498 TGTATGCTCTTACGAGCCATAATC
1 TGTATGCTCTTACAAGCCATAATC
8882522 GATAAGCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (24 bp):
TGTATGCTCTTACAAGCCATAATC
Found at i:8882530 original size:24 final size:23
Alignment explanation
Indices: 8882479--8882562 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
8882469 ATACATGTAT
* * *
8882479 GCTCTTGCAAGCCATAATCTGTAT
1 GCTCTTACGAGCCATAATC-GTAA
8882503 GCTCTTACGAGCCATAATCGATAA
1 GCTCTTACGAGCCATAATCG-TAA
* *
8882527 GCTCTTTCGAG-CAAAATACGGTAA
1 GCTCTTACGAGCCATAAT-C-GTAA
*
8882551 GCTCATACGAGC
1 GCTCTTACGAGC
8882563 TATGGTGAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 6 0.12
24 42 0.86
25 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (23 bp):
GCTCTTACGAGCCATAATCGTAA
Found at i:8885818 original size:14 final size:14
Alignment explanation
Indices: 8885799--8885827 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8885789 AAGTAGTACC
8885799 TTATGAAACATATT
1 TTATGAAACATATT
8885813 TTATGAAACATATT
1 TTATGAAACATATT
8885827 T
1 T
8885828 CATAATGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (14 bp):
TTATGAAACATATT
Found at i:8888022 original size:5 final size:5
Alignment explanation
Indices: 8888014--8888039 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8888004 GAGTTATTTT
8888014 TTTAA TTTAA TTTAA TTTAA TTTAA T
1 TTTAA TTTAA TTTAA TTTAA TTTAA T
8888040 GTATTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:8896249 original size:2 final size:2
Alignment explanation
Indices: 8896242--8896295 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
8896232 GCTTTAGTTT
8896242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8896284 TA TA TA TA TA TA
1 TA TA TA TA TA TA
8896296 AACTCTTCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8896720 original size:61 final size:61
Alignment explanation
Indices: 8896655--8896774 Score: 150
Period size: 61 Copynumber: 2.0 Consensus size: 61
8896645 AATATAAATT
** * * * * *
8896655 ATTCAACAAGTTTAGTCGTTAATATTTATAAAATTTGTCATTTTAATTCAAATTTTAAAAA
1 ATTCAACAAGTTTAACCCTCAACATTTATAAAATTTATCAATTTAATTCAAATTTTAAAAA
* * *
8896716 ATTCAATAAGTTTAACCCTCAACATTTATAAAATTTATCAATTTAGTTCTAATTTTAAA
1 ATTCAACAAGTTTAACCCTCAACATTTATAAAATTTATCAATTTAATTCAAATTTTAAA
8896775 TTTAGCCCTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (61 bp):
ATTCAACAAGTTTAACCCTCAACATTTATAAAATTTATCAATTTAATTCAAATTTTAAAAA
Found at i:8898357 original size:2 final size:2
Alignment explanation
Indices: 8898350--8898383 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8898340 ATAAAAATAC
8898350 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8898384 GTAAACAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8898580 original size:26 final size:26
Alignment explanation
Indices: 8898497--8898590 Score: 93
Period size: 26 Copynumber: 3.6 Consensus size: 26
8898487 ACAATATAAC
*
8898497 TAAATAACATAT-AAAA-ATTCAAAA
1 TAAATAACATATAAAAATATTTAAAA
* * *
8898521 TAAATAATATACATCAAATAGTTTAAAA
1 TAAATAACATATA-AAAATA-TTTAAAA
8898549 TAAATAACATATAAAAATATTTAAAA
1 TAAATAACATATAAAAATATTTAAAA
* * *
8898575 TGAATAATATGTAAAA
1 TAAATAACATATAAAA
8898591 CGGTTTAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 10 0.18
26 23 0.41
27 6 0.11
28 17 0.30
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (26 bp):
TAAATAACATATAAAAATATTTAAAA
Found at i:8898597 original size:26 final size:26
Alignment explanation
Indices: 8898497--8898603 Score: 85
Period size: 26 Copynumber: 4.1 Consensus size: 26
8898487 ACAATATAAC
*
8898497 TAAATAACATATAAAAA--TTCAAAA
1 TAAATAACATATAAAAAGGTTTAAAA
* *
8898521 TAAATAATATACATCAAATA-GTTTAAAA
1 TAAATAACAT--AT-AAAAAGGTTTAAAA
**
8898549 TAAATAACATATAAAAATATTTAAAA
1 TAAATAACATATAAAAAGGTTTAAAA
* * * *
8898575 TGAATAATATGTAAAACGGTTTAAAA
1 TAAATAACATATAAAAAGGTTTAAAA
8898601 TAA
1 TAA
8898604 CTAATGCAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
24 9 0.14
25 4 0.06
26 33 0.51
27 4 0.06
28 15 0.23
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (26 bp):
TAAATAACATATAAAAAGGTTTAAAA
Found at i:8898597 original size:52 final size:51
Alignment explanation
Indices: 8898497--8898603 Score: 126
Period size: 52 Copynumber: 2.1 Consensus size: 51
8898487 ACAATATAAC
* *
8898497 TAAATAACATATAAAAATTCAAAATAAATAATATACATCAAATAGTTTAAAA
1 TAAATAACATATAAAAATTCAAAATAAATAATATA-ATAAAACAGTTTAAAA
* * * *
8898549 TAAATAACATATAAAAATATTTAAAATGAATAATAT-GTAAAACGGTTTAAAA
1 TAAATAACATAT-AAAA-ATTCAAAATAAATAATATAATAAAACAGTTTAAAA
8898601 TAA
1 TAA
8898604 CTAATGCAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 27 0.57
53 4 0.09
54 16 0.34
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (51 bp):
TAAATAACATATAAAAATTCAAAATAAATAATATAATAAAACAGTTTAAAA
Found at i:8898625 original size:23 final size:23
Alignment explanation
Indices: 8898595--8898649 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
8898585 GTAAAACGGT
* *
8898595 TTAAAATAACTAATGCAAAA-GAC
1 TTAAAATAA-AAATACAAAATGAC
*
8898618 TTAAAATAAAAATATAAAATGAC
1 TTAAAATAAAAATACAAAATGAC
8898641 TTAAAATAA
1 TTAAAATAA
8898650 TATACAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (23 bp):
TTAAAATAAAAATACAAAATGAC
Found at i:8898701 original size:42 final size:44
Alignment explanation
Indices: 8898655--8898746 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 44
8898645 AATAATATAC
* * * *
8898655 AATAAAACATTTTGAAATGAATACTATA-AAAAAT-TTAAAGTA
1 AATAAAACATTTTAAAATAAATAATATATAAAAATATTAAAATA
* *
8898697 AATAAAATATTTTAAAATAAATAATATATAAAAATATTAAAATG
1 AATAAAACATTTTAAAATAAATAATATATAAAAATATTAAAATA
8898741 AATAAA
1 AATAAA
8898747 TAAACAACAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 24 0.57
43 6 0.14
44 12 0.29
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (44 bp):
AATAAAACATTTTAAAATAAATAATATATAAAAATATTAAAATA
Found at i:8898703 original size:18 final size:19
Alignment explanation
Indices: 8898680--8898720 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8898670 AATGAATACT
*
8898680 ATAAAA-AATTTAAAGTAA
1 ATAAAATAATTTAAAATAA
*
8898698 ATAAAATATTTTAAAATAA
1 ATAAAATAATTTAAAATAA
8898717 ATAA
1 ATAA
8898721 TATATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (19 bp):
ATAAAATAATTTAAAATAA
Found at i:8898712 original size:19 final size:19
Alignment explanation
Indices: 8898688--8898725 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8898678 CTATAAAAAA
*
8898688 TTTAAAGTAAATAAAATAT
1 TTTAAAATAAATAAAATAT
*
8898707 TTTAAAATAAATAATATAT
1 TTTAAAATAAATAAAATAT
8898726 AAAAATATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TTTAAAATAAATAAAATAT
Found at i:8899575 original size:14 final size:14
Alignment explanation
Indices: 8899556--8899589 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8899546 AATAGATTTG
8899556 TAAAAA-AATAAAAA
1 TAAAAATAA-AAAAA
8899570 TAAAAATAAAAAAA
1 TAAAAATAAAAAAA
8899584 TAAAAA
1 TAAAAA
8899590 GAAGCACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
TAAAAATAAAAAAA
Found at i:8901031 original size:26 final size:26
Alignment explanation
Indices: 8901002--8901111 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
8900992 TGATACAAAT
8901002 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8901028 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8901054 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** * *
8901080 TGATAATGATTTAGATAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8901106 TGATAA
1 TGATAA
8901112 GAATTTCATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8901087 original size:13 final size:13
Alignment explanation
Indices: 8901071--8901111 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8901061 GGGTTAGGTA
8901071 AATGTTTCATGAT
1 AATGTTTCATGAT
8901084 AATGATTT-A-GAT
1 AATG-TTTCATGAT
8901096 AAATGTTTCATGAT
1 -AATGTTTCATGAT
8901110 AA
1 AA
8901112 GAATTTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
12 6 0.25
13 12 0.50
14 6 0.25
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (13 bp):
AATGTTTCATGAT
Found at i:8902621 original size:26 final size:25
Alignment explanation
Indices: 8902581--8902636 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
8902571 TATGTATTTA
**
8902581 AAATTACTGTTATACCCCTAGGAGAT
1 AAATTACTGAAATACCCCTAGG-GAT
* *
8902607 AAATTACTGAAATACCTCTAGGGTT
1 AAATTACTGAAATACCCCTAGGGAT
8902632 AAATT
1 AAATT
8902637 GACCTAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (25 bp):
AAATTACTGAAATACCCCTAGGGAT
Found at i:8906431 original size:14 final size:12
Alignment explanation
Indices: 8906412--8906459 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 12
8906402 GAGACTTTTT
8906412 TAAAAAAATCAAAA
1 TAAAAAAAT--AAA
8906426 TAAAAAAATAAA
1 TAAAAAAATAAA
*
8906438 TAAAAAGAAAAAA
1 TAAAAA-AATAAA
8906451 TCAAAAAAA
1 T-AAAAAAA
8906460 GAAGAAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 9 0.29
13 8 0.26
14 14 0.45
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.12
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:8906464 original size:19 final size:17
Alignment explanation
Indices: 8906428--8906472 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
8906418 AATCAAAATA
*
8906428 AAAAAATAAATAAAAAG
1 AAAAAATAAAAAAAAAG
8906445 AAAAAATCAAAAAAAGAAG
1 AAAAAAT-AAAAAAA-AAG
*
8906464 AAGAAATAA
1 AAAAAATAA
8906473 TCAATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.29
18 8 0.33
19 9 0.38
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.09
Consensus pattern (17 bp):
AAAAAATAAAAAAAAAG
Found at i:8907776 original size:64 final size:64
Alignment explanation
Indices: 8907585--8907776 Score: 278
Period size: 64 Copynumber: 3.0 Consensus size: 64
8907575 TCATTCATAA
* *
8907585 CACATCTAGTTAGGAGCAGTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA-ACAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATA-AGCAT
* *
8907649 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCTTAGCATCCTAATTATTTGACATTAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
* * * * * *
8907713 CACATCTAGTTAGGAGTATTTGAGTCATTTTGAGCATAACATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
8907777 GATACATGAA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
64 115 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:8908223 original size:44 final size:44
Alignment explanation
Indices: 8908170--8908378 Score: 207
Period size: 44 Copynumber: 4.8 Consensus size: 44
8908160 CTTATCTCTT
*
8908170 TGAGGTAGCAA-GAGAGCAGGTTGAAGATTGAAGTCTTATCTTCC
1 TGAGGTAGCAAGGA-AGCAGATTGAAGATTGAAGTCTTATCTTCC
* *
8908214 TGAGGTAGCAAGGAAGCAGACTGAAGACTGAAGATCTTATC-TCC
1 TGAGGTAGCAAGGAAGCAGATTGAAGATTGAAG-TCTTATCTTCC
* ** *
8908258 TTAAGCAGTAGC--GGAA-CAGATCAAAGATGGCGAA-TCTTATCTTCC
1 -TGAG--GTAGCAAGGAAGCAGATTGAAGAT--TGAAGTCTTATCTTCC
* *
8908303 TGAGGTAGCAAGGAAGCAGGTTGAAGAATG-AGTCTTATCTTCC
1 TGAGGTAGCAAGGAAGCAGATTGAAGATTGAAGTCTTATCTTCC
* *
8908346 TGAGGTAGCAAGGAAGCAGACTGAAAATTGAAG
1 TGAGGTAGCAAGGAAGCAGATTGAAGATTGAAG
8908379 ATTTTATATC
Statistics
Matches: 133, Mismatches: 19, Indels: 26
0.75 0.11 0.15
Matches are distributed among these distances:
42 6 0.05
43 38 0.29
44 54 0.41
45 27 0.20
46 3 0.02
47 5 0.04
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.23
Consensus pattern (44 bp):
TGAGGTAGCAAGGAAGCAGATTGAAGATTGAAGTCTTATCTTCC
Found at i:8908364 original size:132 final size:133
Alignment explanation
Indices: 8908170--8908431 Score: 402
Period size: 132 Copynumber: 2.0 Consensus size: 133
8908160 CTTATCTCTT
*
8908170 TGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
1 TGAGGTAGCAAGAGAGCAGGTTGAAGAATGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* * *
8908235 TGAAGACTGAAGATCTTATCTCCTTAAGCAGTAGCGGAACAGATCAAAGATGGCGAATCTTATCT
66 TGAAAACTGAAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCGAATCTTATCT
8908300 TCC
131 TCC
8908303 TGAGGTAGCAAG-GAAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
1 TGAGGTAGCAAGAG-AGCAGGTTGAAGAATGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * * * * *
8908366 CTGAAAATTGAAGATTTTATATCTTTAAACAGTAGGGGAGCAGATCGAAGATGGTGAATCTTATC
65 CTGAAAACTGAAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCGAATCTTATC
8908431 T
130 T
8908432 CCATATATCG
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
132 90 0.77
133 27 0.23
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (133 bp):
TGAGGTAGCAAGAGAGCAGGTTGAAGAATGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
TGAAAACTGAAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCGAATCTTATCT
TCC
Found at i:8908688 original size:147 final size:147
Alignment explanation
Indices: 8908422--8908844 Score: 615
Period size: 147 Copynumber: 2.9 Consensus size: 147
8908412 GAAGATGGTG
* * *
8908422 AATCTTATCTCCATATATCGGCAATGGAGCTGATTTTA-CCACCGA-CCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTCTGAGGTA
*
8908485 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
65 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
8908550 TGAAGATTGGAAA-AGGCA
130 TGAAGATT-GAAATAGGCA
8908568 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* * *
8908633 CAAGAAAACAGGTTGAAAATTGAAGTCTTATTTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
*
8908698 GAAGATTGAAATAGGCG
131 GAAGATTGAAATAGGCA
* * *
8908715 AATCTTATCTCCATATACCGACAATGGAGCA-AGTTTAAGCCTCAAGGCCTTATCTCTCTGAGGT
1 AATCTTATCTCCATATATCGGCAATGGAGCAGA-TTTAAGCCCCAA-GCCTTATCTCTCTGAGGT
* * * * *
8908779 AGCAAGAGAGTAGGTTGAAGATTG-AGTCTTATCTTT-CTGAGGTAGTAAGAAAGTAGACTGAAG
64 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTAT-TTTCCTAAGGTAGCAAGGAAGCAGACTGAAG
8908842 ATT
128 ATT
8908845 AAAGGTCATA
Statistics
Matches: 252, Mismatches: 19, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
146 44 0.17
147 167 0.66
148 41 0.16
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (147 bp):
AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATTGAAATAGGCA
Found at i:8908834 original size:43 final size:43
Alignment explanation
Indices: 8908763--8908844 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
8908753 GCCTCAAGGC
* **
8908763 CTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAGT
* *
8908806 CTTATCTTTCTGAGGTAGTAAGAAAGTAGACTGAAGATT
1 CTTATCTCTCTGAGGTAGCAAGAAAGTAGACTGAAGATT
8908845 AAAGGTCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAGT
Found at i:8909018 original size:177 final size:176
Alignment explanation
Indices: 8908711--8909114 Score: 449
Period size: 177 Copynumber: 2.3 Consensus size: 176
8908701 GATTGAAATA
* * * * *
8908711 GGCGAATCTTATCTCCATATACCGACAATGGAGCA-AGTTTAAGCCTCAAGGCCTTATCTCTCTG
1 GGCGAATCTTATCTCTATGTACCGGCAATGGAGCAGA-TTTAAGCCACTA-GCCTTATCTCTCTG
* * * * *
8908775 AGGTAGCAAGAGAGTAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGTAAGAAAGTAGACTGA
64 AGGTAGCAAAAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA
* * *
8908840 AGATT-AAAGGTCATATCTCCCT-AAGCAG-TAGTGGAGCAGATCGAAGAT
129 AGATTGAAA-ATC-TATCTCCCTAAAGCAGCT-GCGGAGCAAATCGAAGAT
* *
8908888 GGCGAATCTTATCTCTATGTACCGGCAATGGAGTAGATTTTAGCCACTAGCCTTATCTCTCTGAG
1 GGCGAATCTTATCTCTATGTACCGGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAG
** * *
8908953 GTAGCAAAAGAGCAGGTTGGCGATTTTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGCATACTGA
66 GTAGCAAAAGAGCAGGTTGAAGA--TTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA
* * *
8909017 AGATTGAAAATCTATTTCCCTAAAGCAGCTGCGGAGCAAATTGAGGAT
129 AGATTGAAAATCTATCTCCCTAAAGCAGCTGCGGAGCAAATCGAAGAT
* * * * * * *
8909065 GACGGATCTTGTCTCTATGTATCGGTAATAGAGCAGATTTAAGTCACTAG
1 GGCGAATCTTATCTCTATGTACCGGCAATGGAGCAGATTTAAGCCACTAG
8909115 TCCTATTTCC
Statistics
Matches: 190, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
176 43 0.23
177 139 0.73
178 8 0.04
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (176 bp):
GGCGAATCTTATCTCTATGTACCGGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAG
GTAGCAAAAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAG
ATTGAAAATCTATCTCCCTAAAGCAGCTGCGGAGCAAATCGAAGAT
Found at i:8909285 original size:18 final size:18
Alignment explanation
Indices: 8909258--8909293 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8909248 GCCCACATAA
* *
8909258 AAAACCAAAATCATAAAT
1 AAAACAAAAATAATAAAT
8909276 AAAACAAAAATAATAAAT
1 AAAACAAAAATAATAAAT
8909294 TAATTGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAACAAAAATAATAAAT
Found at i:8910740 original size:2 final size:2
Alignment explanation
Indices: 8910733--8910759 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8910723 TGTAGATAAT
8910733 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8910760 TTTAAATCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8912277 original size:14 final size:15
Alignment explanation
Indices: 8912261--8912313 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 15
8912251 AACACCTTAT
*
8912261 TTTTATTAATTTTTT
1 TTTTATTAATTTTTG
8912276 TTTTAGTTTAATTTTTG
1 TTTTA--TTAATTTTTG
*
8912293 TTTT-CTAATTTTTG
1 TTTTATTAATTTTTG
8912307 TTTTATT
1 TTTTATT
8912314 TGTTTCTAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 13 0.41
15 6 0.19
17 13 0.41
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (15 bp):
TTTTATTAATTTTTG
Found at i:8915485 original size:24 final size:24
Alignment explanation
Indices: 8915458--8915504 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8915448 CCCATTTTTA
*
8915458 TTTTATTTTACTTTATTAATATTAT
1 TTTTATATTA-TTTATTAATATTAT
*
8915483 TTTTATATTATTTATTATTATT
1 TTTTATATTATTTATTAATATT
8915505 TTACTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTATATTATTTATTAATATTAT
Found at i:8915497 original size:15 final size:15
Alignment explanation
Indices: 8915479--8915534 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
8915469 TTTATTAATA
8915479 TTATTTTTATATTAT
1 TTATTTTTATATTAT
* *
8915494 TTATTATTATTTTA-
1 TTATTTTTATATTAT
* * *
8915508 CTATTTTTTTATTTT
1 TTATTTTTATATTAT
8915523 TTATTTTT-TATT
1 TTATTTTTATATT
8915535 CTTATGCTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
14 13 0.41
15 19 0.59
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTTATATTAT
Found at i:8915503 original size:21 final size:21
Alignment explanation
Indices: 8915454--8915506 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
8915444 CAACCCCATT
8915454 TTTATT-TTA-TTTTACTTTA
1 TTTATTATTATTTTTACTTTA
*
8915473 -TTAATATTATTTTTA-TATTA
1 TTTATTATTATTTTTACT-TTA
8915493 TTTATTATTATTTT
1 TTTATTATTATTTT
8915507 ACTATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 4 0.14
19 4 0.14
20 8 0.29
21 12 0.43
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATTATTATTTTTACTTTA
Found at i:8915512 original size:21 final size:21
Alignment explanation
Indices: 8915454--8915525 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 21
8915444 CAACCCCATT
8915454 TTTATT-TTATTTTACT-TTA
1 TTTATTATTATTTTACTATTA
*
8915473 -TTAATATTATTTTTA-TATTA
1 TTTATTATTA-TTTTACTATTA
8915493 TTTATTATTATTTTACTATT-
1 TTTATTATTATTTTACTATTA
8915513 TTT-TTATT-TTTTA
1 TTTATTATTATTTTA
8915526 TTTTTTATTC
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.20
19 9 0.20
20 16 0.35
21 12 0.26
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATTATTATTTTACTATTA
Found at i:8915549 original size:36 final size:37
Alignment explanation
Indices: 8915479--8915550 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
8915469 TTTATTAATA
*
8915479 TTATTTTTATATTATTTATTATTATTTTACTATTTTT
1 TTATTTTTATATTATTTATTATTATCTTACTATTTTT
* *
8915516 TTATTTTT-TATTTTTTATTCTTATGCTTA-TATTTT
1 TTATTTTTATATTATTTATTATTAT-CTTACTATTTT
8915551 AAATTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 20 0.65
37 11 0.35
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (37 bp):
TTATTTTTATATTATTTATTATTATCTTACTATTTTT
Found at i:8915598 original size:17 final size:17
Alignment explanation
Indices: 8915556--8915598 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
8915546 ATTTTAAATT
*
8915556 TATT-TTATTTTTTTGC
1 TATTATTATTTTTTTAC
8915572 TA-TATCTATTTTTTTAC
1 TATTAT-TATTTTTTTAC
8915589 TATTATTATT
1 TATTATTATT
8915599 AAATTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 1 0.04
16 3 0.13
17 16 0.70
18 3 0.13
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTATTATTTTTTTAC
Found at i:8916699 original size:23 final size:22
Alignment explanation
Indices: 8916669--8916714 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
8916659 TTCTTATTGT
8916669 TCAAAAAAAAGAAAATCAAAAAA
1 TCAAAAAAAAGAAAAT-AAAAAA
* *
8916692 TCAAAAAAAATATAATAAAAAA
1 TCAAAAAAAAGAAAATAAAAAA
8916714 T
1 T
8916715 ATTTATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (22 bp):
TCAAAAAAAAGAAAATAAAAAA
Found at i:8918422 original size:14 final size:14
Alignment explanation
Indices: 8918403--8918432 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8918393 ATTGCGTTCA
*
8918403 TAGTTATATTAGAT
1 TAGTTAAATTAGAT
8918417 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
8918431 TA
1 TA
8918433 AAAACAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:8920116 original size:27 final size:27
Alignment explanation
Indices: 8920073--8920136 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
8920063 TTTAATCGTA
*
8920073 TTTA-AATTATACCTATAA-CATTAAT
1 TTTATAATTATACCTATAAGAATTAAT
* *
8920098 TTTATAATTTTACTCTATAAGAATTTAT
1 TTTATAATTATAC-CTATAAGAATTAAT
8920126 TTTACTAATTA
1 TTTA-TAATTA
8920137 AAATTAACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 4 0.13
26 7 0.23
27 6 0.19
28 9 0.29
29 5 0.16
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (27 bp):
TTTATAATTATACCTATAAGAATTAAT
Found at i:8921163 original size:34 final size:32
Alignment explanation
Indices: 8921091--8921165 Score: 80
Period size: 34 Copynumber: 2.3 Consensus size: 32
8921081 AATTTTGATC
* *
8921091 ACAA-ATCATTCAAATTCAATTCAAATATACT
1 ACAATATCATTCAAATACAATTCAAATATAAT
* *
8921122 ATTAATATCTATTCACATACAATTCAAAATATAAT
1 A-CAATATC-ATTCAAATACAATTC-AAATATAAT
8921157 ACAATATCA
1 ACAATATCA
8921166 ACACATATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
31 1 0.03
32 2 0.06
33 4 0.11
34 19 0.54
35 9 0.26
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.33
Consensus pattern (32 bp):
ACAATATCATTCAAATACAATTCAAATATAAT
Found at i:8921515 original size:23 final size:22
Alignment explanation
Indices: 8921468--8921515 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
8921458 CAATTTAATC
8921468 CTAACTAAATTCACTTACTTTT
1 CTAACTAAATTCACTTACTTTT
*
8921490 CTAACTCAATTCATACTT-CTTTT
1 CTAACTAAATTC--ACTTACTTTT
8921513 CTA
1 CTA
8921516 CTTAATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 8 0.35
24 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (22 bp):
CTAACTAAATTCACTTACTTTT
Found at i:8931346 original size:22 final size:22
Alignment explanation
Indices: 8931321--8931363 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8931311 TAATTAAGAA
*
8931321 ACTTTAATTCATTCAATGTAAT
1 ACTTTAATTAATTCAATGTAAT
* *
8931343 ACTTTTATTAATTGAATGTAA
1 ACTTTAATTAATTCAATGTAA
8931364 AGGAGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (22 bp):
ACTTTAATTAATTCAATGTAAT
Found at i:8936911 original size:22 final size:22
Alignment explanation
Indices: 8936886--8936928 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8936876 TAATTAAGAA
*
8936886 ACTTTAATTCATTCAATGTAAT
1 ACTTTAATTAATTCAATGTAAT
* *
8936908 ACTTTTATTAATTGAATGTAA
1 ACTTTAATTAATTCAATGTAA
8936929 AGGAGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (22 bp):
ACTTTAATTAATTCAATGTAAT
Found at i:8940115 original size:131 final size:129
Alignment explanation
Indices: 8939726--8940116 Score: 566
Period size: 131 Copynumber: 3.0 Consensus size: 129
8939716 TAATTATTCA
* * * *
8939726 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATCCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATG-TTAGCAATCGGGGAATCGTGCCCTATCG
* * * * *
8939791 TGCTGGGTCGCGATTTCCCGTTTGTTCAAAATAATCGAATATGCCTCTGGAATTTCACTCATATC
65 TGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTC
** *
8939856 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTCAGCAAGTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTT-AGCAA-TCGGGGAATCGTGCCCTATC
* * *
8939921 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATAGTCCTTTGGAATGTCACTCATGT
64 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
8939986 C
129 C
*
8939987 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTCTAGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGT-TAGCAA-TCGGGGAATCGTGCCCTATC
* * *
8940052 GTGCTGGGTTGCGATTTCCTGTTTGTTCGAAATAACCGAATATTCCTTTAGAATTTCACTCATGT
64 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
8940117 TCTCTAAATT
Statistics
Matches: 232, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
129 2 0.01
130 36 0.16
131 193 0.83
132 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (129 bp):
TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTAGCAATCGGGGAATCGTGCCCTATCGT
GCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTC
Found at i:8949276 original size:86 final size:86
Alignment explanation
Indices: 8949186--8949359 Score: 339
Period size: 86 Copynumber: 2.0 Consensus size: 86
8949176 ATTAAAATTG
*
8949186 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATCAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
8949251 TCTTTAAAATAACTTTTATTA
66 TCTTTAAAATAACTTTTATTA
8949272 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
8949337 TCTTTAAAATAACTTTTATTA
66 TCTTTAAAATAACTTTTATTA
8949358 AA
1 AA
8949360 AAATCACATT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 87 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.47
Consensus pattern (86 bp):
AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
TCTTTAAAATAACTTTTATTA
Found at i:8950958 original size:14 final size:14
Alignment explanation
Indices: 8950939--8950965 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8950929 TAGTACCTTA
8950939 TGAAACATATTTCG
1 TGAAACATATTTCG
8950953 TGAAACATATTTC
1 TGAAACATATTTC
8950966 ATAATGCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
TGAAACATATTTCG
Found at i:8953960 original size:25 final size:25
Alignment explanation
Indices: 8953932--8953997 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
8953922 CGAAATGACT
*
8953932 TGGCACTAAGTGTGCGGAAATTGTA
1 TGGCACTAAGTGTGCGGAAATTCTA
8953957 TGGCACTAAGTGTGCGGAAATTCTA
1 TGGCACTAAGTGTGCGGAAATTCTA
*
8953982 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
8953998 AATATATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (25 bp):
TGGCACTAAGTGTGCGGAAATTCTA
Found at i:8956482 original size:16 final size:16
Alignment explanation
Indices: 8956445--8956486 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8956435 AAGACTTGTT
*
8956445 TTTTATT-TTAATTTA
1 TTTTATTATTTATTTA
* *
8956460 ATGTATTATTTATTTA
1 TTTTATTATTTATTTA
8956476 TTTTATTATTT
1 TTTTATTATTT
8956487 TTCACATGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTATTATTTATTTA
Found at i:8957027 original size:9 final size:9
Alignment explanation
Indices: 8957013--8957037 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8957003 TTTAAACGGA
8957013 TTTAAATAT
1 TTTAAATAT
8957022 TTTAAATAT
1 TTTAAATAT
8957031 TTTAAAT
1 TTTAAAT
8957038 GTTTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTAAATAT
Found at i:8958144 original size:8 final size:8
Alignment explanation
Indices: 8958126--8958157 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
8958116 GGAAAGAGAT
8958126 AAAAT-AA
1 AAAATAAA
8958133 AAAATAAA
1 AAAATAAA
8958141 AAAATAAA
1 AAAATAAA
8958149 AAAATAAA
1 AAAATAAA
8958157 A
1 A
8958158 GATGAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.21
8 19 0.79
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:8958276 original size:13 final size:14
Alignment explanation
Indices: 8958258--8958286 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8958248 AGTAATTTTA
8958258 TATTTTTTTAT-AT
1 TATTTTTTTATGAT
8958271 TATTTTTTTATGAT
1 TATTTTTTTATGAT
8958285 TA
1 TA
8958287 ATATTTTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.72
Consensus pattern (14 bp):
TATTTTTTTATGAT
Found at i:8958406 original size:15 final size:16
Alignment explanation
Indices: 8958386--8958415 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8958376 ATCAATCTAA
8958386 AATATTTTA-TAAATT
1 AATATTTTATTAAATT
8958401 AATATTTTATTAAAT
1 AATATTTTATTAAAT
8958416 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTTATTAAATT
Found at i:8964402 original size:2 final size:2
Alignment explanation
Indices: 8964382--8964422 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
8964372 TCTGAGTTAA
* *
8964382 AT AT -T AT AT CT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8964423 TTGGATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8966574 original size:14 final size:14
Alignment explanation
Indices: 8966555--8966584 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8966545 ATTAATTTTT
8966555 TTAAAAAATAAAAA
1 TTAAAAAATAAAAA
*
8966569 TTAAAAGATAAAAA
1 TTAAAAAATAAAAA
8966583 TT
1 TT
8966585 CGGAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
TTAAAAAATAAAAA
Found at i:8970092 original size:40 final size:40
Alignment explanation
Indices: 8970037--8970119 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
8970027 GGACACTATC
8970037 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8970077 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8970117 ATC
1 ATC
8970120 CTATGCTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (40 bp):
ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
Found at i:8970431 original size:21 final size:21
Alignment explanation
Indices: 8970402--8970441 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8970392 GAAGAATTGC
* *
8970402 ATTCGGAATCAAAGTCAGACT
1 ATTCAGAATCAAAGGCAGACT
*
8970423 ATTCAGAATCCAAGGCAGA
1 ATTCAGAATCAAAGGCAGA
8970442 AGCAACGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
ATTCAGAATCAAAGGCAGACT
Found at i:8971218 original size:22 final size:23
Alignment explanation
Indices: 8971174--8971218 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8971164 TTTATATTTT
* *
8971174 TATTTTTAGAAATTTAATCATTC
1 TATTTTTACAAATTTAATAATTC
*
8971197 TATTTTT-CAAATTTCATAATTC
1 TATTTTTACAAATTTAATAATTC
8971219 AAATTCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTTTTACAAATTTAATAATTC
Found at i:8972012 original size:20 final size:20
Alignment explanation
Indices: 8971989--8972029 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8971979 TTTCTTTATT
*
8971989 TTTTTAGAATTTTTTTAAAA
1 TTTTTAGAATTTTTTAAAAA
*
8972009 TTTTTATAATTTTTTAAAAA
1 TTTTTAGAATTTTTTAAAAA
8972029 T
1 T
8972030 ATAAAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTTAGAATTTTTTAAAAA
Found at i:8976259 original size:29 final size:27
Alignment explanation
Indices: 8976189--8976263 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 27
8976179 ATTGTATTTT
*
8976189 ATTTTTTTATTTAAAAAAAAGTAAATTA
1 ATTTTTCTA-TTAAAAAAAAGTAAATTA
8976217 ATCTTTGTAC-ATTAAAAAAAAGTACAAATTA
1 AT-TTT-T-CTATTAAAAAAAAGT--AAATTA
8976248 ATTTTTCTATTAAAAA
1 ATTTTTCTATTAAAAA
8976264 TTTCATCTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
28 3 0.08
29 24 0.60
30 5 0.12
31 8 0.20
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41
Consensus pattern (27 bp):
ATTTTTCTATTAAAAAAAAGTAAATTA
Found at i:8977066 original size:143 final size:143
Alignment explanation
Indices: 8976897--8977186 Score: 571
Period size: 143 Copynumber: 2.0 Consensus size: 143
8976887 CATACAAAAC
8976897 TATAGAAAATTATTTAGAAGTTATTAAGAATTATAAGAAATTAATAAAATAAACAACAATCATAT
1 TATAGAAAATTATTTAGAAGTTATTAAGAATTATAAGAAATTAATAAAATAAACAACAATCATAT
8976962 AAGAAGAGACATGTATCTCTAGGTATAGTTGAATTGTTTTAACATGCTATATGTGTATATATAAG
66 AAGAAGAGACATGTATCTCTAGGTATAGTTGAATTGTTTTAACATGCTATATGTGTATATATAAG
8977027 TTTTTTTAATCAT
131 TTTTTTTAATCAT
*
8977040 TATAGAAAATTATTTAGAGGTTATTAAGAATTATAAGAAATTAATAAAATAAACAACAATCATAT
1 TATAGAAAATTATTTAGAAGTTATTAAGAATTATAAGAAATTAATAAAATAAACAACAATCATAT
8977105 AAGAAGAGACATGTATCTCTAGGTATAGTTGAATTGTTTTAACATGCTATATGTGTATATATAAG
66 AAGAAGAGACATGTATCTCTAGGTATAGTTGAATTGTTTTAACATGCTATATGTGTATATATAAG
8977170 TTTTTTTAATCAT
131 TTTTTTTAATCAT
8977183 TATA
1 TATA
8977187 TATAAACTAT
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 146 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (143 bp):
TATAGAAAATTATTTAGAAGTTATTAAGAATTATAAGAAATTAATAAAATAAACAACAATCATAT
AAGAAGAGACATGTATCTCTAGGTATAGTTGAATTGTTTTAACATGCTATATGTGTATATATAAG
TTTTTTTAATCAT
Found at i:8977315 original size:10 final size:10
Alignment explanation
Indices: 8977300--8977351 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
8977290 AAAAACATTG
8977300 TTTTTAATAA
1 TTTTTAATAA
*
8977310 TTTTTAGT-A
1 TTTTTAATAA
**
8977319 TTTTTTTTAA
1 TTTTTAATAA
8977329 TTTTT-ATAA
1 TTTTTAATAA
*
8977338 TTCTTAATAA
1 TTTTTAATAA
8977348 TTTT
1 TTTT
8977352 AAACAGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 14 0.41
10 20 0.59
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:8977348 original size:19 final size:19
Alignment explanation
Indices: 8977303--8977351 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
8977293 AACATTGTTT
*
8977303 TTAATAATTTTTAGTATTT
1 TTAATAATTTTTAGTATTC
**
8977322 TTTTTAATTTTTA-TAATTC
1 TTAATAATTTTTAGT-ATTC
8977341 TTAATAATTTT
1 TTAATAATTTT
8977352 AAACAGTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TTAATAATTTTTAGTATTC
Found at i:8979094 original size:17 final size:18
Alignment explanation
Indices: 8979060--8979098 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8979050 GCTAGCATTT
*
8979060 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
8979078 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
8979095 AATA
1 AATA
8979099 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:8979371 original size:5 final size:5
Alignment explanation
Indices: 8979357--8979428 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
8979347 ATACATCTAC
* * * *
8979357 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
8979405 AATA- AATAAT AATA- AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT
8979429 GATGGATAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
3 2 0.04
4 10 0.19
5 37 0.69
6 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:8981515 original size:206 final size:206
Alignment explanation
Indices: 8981142--8981903 Score: 1231
Period size: 206 Copynumber: 3.7 Consensus size: 206
8981132 AAATCTGCTT
* * *
8981142 CTTCGATTTGTTTTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8981207 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * * ** *
8981272 GGATCTACTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATA
131 AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
8981337 GAGACACCAAA
196 GAGACGCCAAA
* *
8981348 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8981413 GTAAAAGCCAAATCAGCTATGGT-TTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8981477 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
130 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
8981542 GGAGACGCCAAA
195 GGAGACGCCAAA
* *
8981554 CTTCGATTTGTTCTCTGACAATATAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8981619 GTGAAATCCAAATCATCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8981683 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTTTCCGTCGAATAT
130 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
8981748 GGAGACGCCAAA
195 GGAGACGCCAAA
* * *
8981760 CTTCTATTTATTCTCTGACAATACAGAGATGGCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
8981825 GTGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
*
8981890 GGATCTTGCTTCAG
131 AGATC-TGCTTCAG
8981904 CCAGATCTGC
Statistics
Matches: 517, Mismatches: 36, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
205 2 0.00
206 505 0.98
207 10 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
GAGACGCCAAA
Found at i:8993338 original size:2 final size:2
Alignment explanation
Indices: 8993331--8993370 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8993321 ATAAAGAATC
8993331 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8993371 ACATATAGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8994034 original size:15 final size:15
Alignment explanation
Indices: 8994002--8994048 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
8993992 ATACATCTAC
* *
8994002 AATATAATATCATAT
1 AATATAATATAATTT
*
8994017 AATATAATAAAATTT
1 AATATAATATAATTT
8994032 AAT-TACATATAATTT
1 AATATA-ATATAATTT
8994047 AA
1 AA
8994049 AAATAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 2 0.07
15 25 0.93
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (15 bp):
AATATAATATAATTT
Found at i:9001298 original size:3 final size:3
Alignment explanation
Indices: 9001290--9001322 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
9001280 AAATGAGTCA
*
9001290 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
9001323 ACGGATGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:9002648 original size:27 final size:27
Alignment explanation
Indices: 9002610--9002663 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
9002600 AAATTGCACG
*
9002610 GTTTTCTAAACTAGAGTTCTAGCCCCA
1 GTTTTCTAAACTAAAGTTCTAGCCCCA
9002637 GTTTTCTAAACTAAAGTTCTAGCCCCA
1 GTTTTCTAAACTAAAGTTCTAGCCCCA
9002664 TGACAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (27 bp):
GTTTTCTAAACTAAAGTTCTAGCCCCA
Found at i:9005283 original size:26 final size:26
Alignment explanation
Indices: 9005236--9005294 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
9005226 CTTTATACAT
* *
9005236 AATAGATTTTAAAAATTATATATAAA
1 AATAGATTTAAAAAAATATATATAAA
9005262 AATAGATTTAAAAGAAATTATATATATAA
1 AATAGATTTAAAA-AAA-TATATATA-AA
9005291 AATA
1 AATA
9005295 ACATGGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 2 0.07
28 8 0.29
29 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (26 bp):
AATAGATTTAAAAAAATATATATAAA
Found at i:9006945 original size:15 final size:16
Alignment explanation
Indices: 9006925--9006957 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
9006915 TATATATTTT
9006925 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
9006940 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
9006957 T
1 T
9006958 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:9007042 original size:22 final size:22
Alignment explanation
Indices: 9007003--9007061 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
9006993 GTTTTAAGAA
*
9007003 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
9007024 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
9007046 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
9007062 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:9007078 original size:26 final size:24
Alignment explanation
Indices: 9007032--9007091 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
9007022 ATTTGTTTTA
*
9007032 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
9007056 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
9007082 TTTTTTATTT
1 ATATTTATTT
9007092 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:9008904 original size:50 final size:50
Alignment explanation
Indices: 9008829--9009005 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
9008819 CCATGGCAAC
* *
9008829 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
9008879 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
9008929 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
9008980 AAGTTAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
9009006 CTGATCAATG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:9009023 original size:31 final size:31
Alignment explanation
Indices: 9008985--9009043 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
9008975 ATGGCAAGTT
*
9008985 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGACTACCTGATCAATG
9009016 AAAAGTGGTAGCTTCGACTACCTGATCA
1 AAAAGTGGTAGCTTCGACTACCTGATCA
9009044 TCAGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAATG
Found at i:9009105 original size:31 final size:31
Alignment explanation
Indices: 9009047--9009105 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
9009037 CTGATCATCA
* * *
9009047 GCTACTTGATTAGTGAAAAATGGTAGCTCCG
1 GCTACCTGATCAGTGAAAAATGATAGCTCCG
* *
9009078 GCTACCTGATCAGTGAATAGTGATAGCT
1 GCTACCTGATCAGTGAAAAATGATAGCT
9009106 TCGGTTACAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAATGATAGCTCCG
Found at i:9020719 original size:46 final size:46
Alignment explanation
Indices: 9020667--9020980 Score: 441
Period size: 46 Copynumber: 6.8 Consensus size: 46
9020657 AGTGTGCTCT
* *
9020667 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
9020713 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
9020759 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
9020805 GTGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
9020851 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
9020897 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
9020944 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
9020981 TATGACATCA
Statistics
Matches: 249, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 207 0.83
47 42 0.17
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:9027926 original size:16 final size:15
Alignment explanation
Indices: 9027905--9027945 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
9027895 AAAATAAGTG
9027905 AAATAACTTAAAATAA
1 AAATAA-TTAAAATAA
*
9027921 AAATAAAT-AAATAA
1 AAATAATTAAAATAA
9027935 AAA-AATTAAAA
1 AAATAATTAAAA
9027946 ACAGAAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.14
14 12 0.55
15 1 0.05
16 6 0.27
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (15 bp):
AAATAATTAAAATAA
Done.