Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 359 of 378
Found at i:107689941 original size:19 final size:19
Alignment explanation
Indices: 107689919--107689958 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
107689909 TTAAACTTTT
* *
107689919 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
107689938 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
107689957 AT
1 AT
107689959 AAAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:107691965 original size:3 final size:3
Alignment explanation
Indices: 107691957--107692133 Score: 133
Period size: 3 Copynumber: 58.3 Consensus size: 3
107691947 TCCCATTTCT
* * * * *
107691957 TTA TTA TTA CTA TTA TCA TTA TTA TTTG TTGC TTGA TATA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TT-A T-TA TTA TTA TTA
* ** *
107692006 TTA TTT TTA TCC TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
107692054 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TT- TGA -TA CTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** *
107692100 CTA TTA TTA TTC TAA TTA CCA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
107692134 ATATATACAT
Statistics
Matches: 135, Mismatches: 34, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
2 2 0.01
3 124 0.92
4 8 0.06
5 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:107692219 original size:87 final size:87
Alignment explanation
Indices: 107692128--107692307 Score: 351
Period size: 87 Copynumber: 2.1 Consensus size: 87
107692118 CCATTATTAC
*
107692128 TATTATATATATACATACCTTTTATTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
107692193 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
107692215 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
107692280 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
107692302 TATTAT
1 TATTAT
107692308 TATTCTATTA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (87 bp):
TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
TTATTTTTATCACTTACATGGT
Found at i:107694448 original size:30 final size:28
Alignment explanation
Indices: 107694407--107694480 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 28
107694397 ATTTTAAAAA
107694407 TTTAAAAATTAAAAAAAATAAAAAAATC
1 TTTAAAAATTAAAAAAAATAAAAAAATC
* * *
107694435 TTTAAAATTATTAAAACATATAAAAATAT-
1 TTTAAAA--ATTAAAAAAAATAAAAAAATC
* *
107694464 TTTTAAATTTAAAAAAA
1 TTTAAAAATTAAAAAAA
107694481 TAATTAAATG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
27 7 0.19
28 7 0.19
29 6 0.16
30 17 0.46
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.34
Consensus pattern (28 bp):
TTTAAAAATTAAAAAAAATAAAAAAATC
Found at i:107696728 original size:17 final size:17
Alignment explanation
Indices: 107696706--107696741 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
107696696 TGAAAAATAG
*
107696706 TTTTTTCTTTTTTAAAT
1 TTTTTTCTTTTTAAAAT
107696723 TTTTTTCTTTTTAAAAT
1 TTTTTTCTTTTTAAAAT
107696740 TT
1 TT
107696742 CACACTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTTCTTTTTAAAAT
Found at i:107699006 original size:24 final size:23
Alignment explanation
Indices: 107698966--107699022 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
107698956 TTTAATTAAC
107698966 AAAAATATATACGTTAA-ATATTA
1 AAAAATATATACGTTAATA-ATTA
*
107698989 TAAAAATATATTA-TTTAATGAATTA
1 -AAAAATATA-TACGTTAAT-AATTA
107699014 AAAAATATA
1 AAAAATATA
107699023 AAATTACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 22 0.76
25 6 0.21
26 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (23 bp):
AAAAATATATACGTTAATAATTA
Found at i:107700453 original size:16 final size:16
Alignment explanation
Indices: 107700405--107700458 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
107700395 ATTTACTATT
107700405 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
*
107700420 T-TAATTAAG-TAATTA
1 TATAA-TAAGATATTTA
*
107700435 TATTATAAGATATTTA
1 TATAATAAGATATTTA
107700451 TATAATAA
1 TATAATAA
107700459 ATAAATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 3 0.10
15 11 0.35
16 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:107701512 original size:16 final size:15
Alignment explanation
Indices: 107701483--107701532 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
107701473 TAATATAAAG
107701483 TGAATTGAAATATAT
1 TGAATTGAAATATAT
107701498 TGAATTGAGAATATAT
1 TGAATTGA-AATATAT
107701514 CTGATTAATTGAAATATAT
1 -TG---AATTGAAATATAT
107701533 ACTGATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 2 0.07
19 7 0.23
20 6 0.20
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (15 bp):
TGAATTGAAATATAT
Found at i:107701525 original size:20 final size:20
Alignment explanation
Indices: 107701500--107701539 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
107701490 AAATATATTG
107701500 AATTGAGAATATAT-CTGATT
1 AATTGA-AATATATACTGATT
107701520 AATTGAAATATATACTGATT
1 AATTGAAATATATACTGATT
107701540 GAAAACTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.40
Consensus pattern (20 bp):
AATTGAAATATATACTGATT
Found at i:107715695 original size:46 final size:44
Alignment explanation
Indices: 107715596--107715703 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
107715586 TGTCTTTGAC
** * * * *
107715596 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
* *
107715640 ATGGACTTACTTGGCTCAATCCTATCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
107715686 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
107715704 TTTCTGTTCT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 31 0.58
46 22 0.42
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:107722234 original size:2 final size:2
Alignment explanation
Indices: 107722227--107722260 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
107722217 TTTCACCTAA
107722227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107722261 GAAATTAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107726677 original size:15 final size:17
Alignment explanation
Indices: 107726637--107726677 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
107726627 CAATCATTCT
107726637 AGTAAATTAACTCATCA
1 AGTAAATTAACTCATCA
*
107726654 ACT-AATTAA-TC-TCA
1 AGTAAATTAACTCATCA
107726668 AGTAAATTAA
1 AGTAAATTAA
107726678 GTAATTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 5 0.24
15 8 0.38
16 6 0.29
17 2 0.10
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.32
Consensus pattern (17 bp):
AGTAAATTAACTCATCA
Found at i:107731740 original size:18 final size:19
Alignment explanation
Indices: 107731717--107731761 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
107731707 CTTTTATAAA
107731717 TTTATAAAAA-ATATTATT
1 TTTATAAAAACATATTATT
*
107731735 TTTATAAAAACATTTTATT
1 TTTATAAAAACATATTATT
*
107731754 TCTATAAA
1 TTTATAAA
107731762 TTTGTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTATAAAAACATATTATT
Found at i:107733074 original size:39 final size:39
Alignment explanation
Indices: 107732997--107733074 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
107732987 ATATCATGTC
** * *
107732997 ATTAATTACTATGTTTAAAGGAATATCACGTGACACGTT
1 ATTAATTACTATGTGCAAAGGAATACCACATGACACGTT
* * *
107733036 ATTAATTACTATGTGCAAATGAATACCATATGATACGTT
1 ATTAATTACTATGTGCAAAGGAATACCACATGACACGTT
107733075 TTCATTGATA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (39 bp):
ATTAATTACTATGTGCAAAGGAATACCACATGACACGTT
Found at i:107741416 original size:2 final size:2
Alignment explanation
Indices: 107741411--107741435 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107741401 ACACACACAC
107741411 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
107741436 AATGATGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107741468 original size:21 final size:20
Alignment explanation
Indices: 107741444--107741486 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
107741434 TAAATGATGG
107741444 TATTAGGAA-TATACGATATAA
1 TATTA-GAAGTATAC-ATATAA
*
107741465 TATTAGAAGTATACATGTAA
1 TATTAGAAGTATACATATAA
107741485 TA
1 TA
107741487 GTATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.47, C:0.05, G:0.14, T:0.35
Consensus pattern (20 bp):
TATTAGAAGTATACATATAA
Found at i:107741556 original size:25 final size:24
Alignment explanation
Indices: 107741507--107741571 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 24
107741497 AGTATAACTA
107741507 ATAATATTAAAAATATGTATAAAAT
1 ATAATATTAAAAA-ATGTATAAAAT
107741532 ATAATATTAAAAAACT-TATACAAAT
1 ATAATATTAAAAAA-TGTATA-AAAT
107741557 A-ACATATATAAAAAA
1 ATA-ATAT-TAAAAAA
107741572 ATACATATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
24 6 0.17
25 23 0.64
26 7 0.19
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (24 bp):
ATAATATTAAAAAATGTATAAAAT
Found at i:107741649 original size:12 final size:12
Alignment explanation
Indices: 107741632--107741663 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
107741622 AAATAACATC
107741632 TAATAATATTAA
1 TAATAATATTAA
107741644 TAATAATATTAA
1 TAATAATATTAA
*
107741656 AAATAATA
1 TAATAATA
107741664 ATGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:107741764 original size:13 final size:14
Alignment explanation
Indices: 107741746--107741776 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
107741736 ATGTATGAAT
107741746 ATATACATATA-TA
1 ATATACATATATTA
107741759 ATATACATATATTA
1 ATATACATATATTA
107741773 ATAT
1 ATAT
107741777 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:107744264 original size:52 final size:52
Alignment explanation
Indices: 107744178--107744277 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
107744168 ATTTAATAGG
* * * *
107744178 AATTGAAATTACCTCAGCGTGTCCCGAGGTTCAACTCACTTCTCGCAACATA
1 AATTGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAACATA
**
107744230 AATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAA
1 AATTGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAA
107744278 TATGAGTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (52 bp):
AATTGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAACATA
Found at i:107744340 original size:71 final size:71
Alignment explanation
Indices: 107744224--107744362 Score: 251
Period size: 71 Copynumber: 2.0 Consensus size: 71
107744214 CACTTCTCGC
* *
107744224 AACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAATTCAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
107744289 TTTTGA
66 TTTTGA
*
107744295 AACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACATAAATTCAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
107744360 TTT
66 TTT
107744363 CTTGGAAAAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (71 bp):
AACATAAATTCAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTTGA
Found at i:107749060 original size:2 final size:2
Alignment explanation
Indices: 107749049--107749088 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
107749039 AGTAACTACA
107749049 AT AT AT -T AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107749089 TATTTCCCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107750740 original size:15 final size:14
Alignment explanation
Indices: 107750722--107750755 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
107750712 TTCTTCTTTT
107750722 TTTTTTTGGGTTAGG
1 TTTTTTTGGG-TAGG
107750737 TTTTTTTGGGTAGG
1 TTTTTTTGGGTAGG
107750751 TTTTT
1 TTTTT
107750756 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.65
Consensus pattern (14 bp):
TTTTTTTGGGTAGG
Found at i:107750740 original size:16 final size:16
Alignment explanation
Indices: 107750721--107750804 Score: 58
Period size: 15 Copynumber: 5.7 Consensus size: 16
107750711 TTTCTTCTTT
107750721 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
107750737 -TTTTTTTGGG-TAGG
1 TTTTTTTTGGGTTAGG
*
107750751 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
** * *
107750763 TTTTTTTT-TCTTTGT
1 TTTTTTTTGGGTTAGG
107750778 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
107750794 TTTTTTTTGGG
1 TTTTTTTTGGG
107750805 GGCTTAATGG
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
11 3 0.06
12 5 0.09
13 2 0.04
14 5 0.09
15 22 0.41
16 17 0.31
ACGTcount: A:0.04, C:0.04, G:0.23, T:0.70
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:107751632 original size:30 final size:30
Alignment explanation
Indices: 107751596--107751657 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
107751586 TTTTGAAAAA
107751596 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
107751626 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
107751656 CA
1 CA
107751658 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:107751776 original size:14 final size:14
Alignment explanation
Indices: 107751753--107751787 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
107751743 TGAGTTGATT
107751753 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
107751766 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
107751780 TTTGAAAA
1 TTTGAAAA
107751788 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:107752094 original size:72 final size:73
Alignment explanation
Indices: 107751805--107752333 Score: 427
Period size: 72 Copynumber: 6.8 Consensus size: 73
107751795 ACATGTAACC
* * * *
107751805 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
107751870 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
107751883 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGATAGAAATTGAAAATAGCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAAAATACCT
*
107751948 CAGCGCATGAGC-
64 CAGCG--TG-TCT
* * *
107751960 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
107752025 ACGTGTCT
66 GCGTGTCT
* ** * *
107752033 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
107752097 GCGTGTCC
66 GCGTGTCT
*
107752105 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGAAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTTGAAA-ACAGAAATTG----
** ** *
107752170 ATGGAAATTGAAAATACCTCGACGTGTGAT
55 A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
107752200 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
107752265 CAGCGTGTC-
64 CAGCGTGTCT
*
107752274 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCA-AAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
107752334 ACGGAAATTG
Statistics
Matches: 367, Mismatches: 53, Indels: 66
0.76 0.11 0.14
Matches are distributed among these distances:
72 66 0.18
73 30 0.08
74 52 0.14
75 23 0.06
76 55 0.15
77 4 0.01
78 19 0.05
79 40 0.11
80 11 0.03
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 2 0.01
88 1 0.00
90 11 0.03
91 11 0.03
94 4 0.01
95 1 0.00
96 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:107752285 original size:170 final size:167
Alignment explanation
Indices: 107752001--107752476 Score: 732
Period size: 164 Copynumber: 2.9 Consensus size: 167
107751991 TGATTTTTTG
* * * ** *
107752001 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
107752064 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
107752128 ATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA-TTTTTTTTTTTGAAAGGCA-AAATTGA
*
107752167 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
107752232 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
107752297 AATATGAGTTGA----TTTTTTTGAAAGGCAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAATTGA
* * * *
107752331 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
107752396 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
107752461 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
107752477 GAAAAAGTAG
Statistics
Matches: 285, Mismatches: 17, Indels: 14
0.90 0.05 0.04
Matches are distributed among these distances:
164 143 0.50
165 14 0.05
166 27 0.09
167 1 0.00
168 31 0.11
170 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (167 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAATTGA
Found at i:107752296 original size:74 final size:75
Alignment explanation
Indices: 107752173--107752333 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
107752163 TTGAAAAATG
*
107752173 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
107752238 TTTTGACAACA
65 TTTTGACAACA
* * *
107752249 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
107752312 TTTTGA-AAGGCA
65 TTTTGACAA--CA
107752324 -AAATTGAAAA
1 GAAATTGAAAA
107752334 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
73 2 0.03
74 51 0.66
75 3 0.04
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:107752418 original size:90 final size:87
Alignment explanation
Indices: 107752249--107752422 Score: 251
Period size: 90 Copynumber: 2.0 Consensus size: 87
107752239 TTTGACAACA
* * *
107752249 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
107752314 TTGAAAGGCAAAATTGAAAAACG
66 TTGAAA-GCAAAATTGAAAAACG
* *
107752337 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
107752402 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCA-AAATTGAAA
107752423 TTACCTCAGC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
88 22 0.29
89 2 0.03
90 51 0.66
91 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (87 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAATTGAAAAACG
Found at i:107752462 original size:74 final size:75
Alignment explanation
Indices: 107752337--107752476 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
107752327 TTGAAAAACG
* *
107752337 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
107752402 TTTTGACAACA
65 TTTTGACAACA
* * *
107752413 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
107752477 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:107752675 original size:72 final size:71
Alignment explanation
Indices: 107752541--107752706 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
107752531 TGAACAACGT
* * * *
107752541 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
107752606 GAGTTG
66 GAGTTG
*
107752612 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
107752677 TGAGTTG
65 TGAGTTG
**
107752684 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
107752707 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:107752849 original size:71 final size:71
Alignment explanation
Indices: 107752706--107752969 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
107752696 AAAAATTAAA
* * * * *
107752706 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
107752769 GCCCCG
66 GCCCCG
* *
107752775 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
107752840 GTCTTG
66 GCCCCG
* * *
107752846 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
107752909 TGCCCCG
65 TGCCCCG
*
107752916 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
107752970 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:107752927 original size:70 final size:69
Alignment explanation
Indices: 107752706--107752969 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
107752696 AAAAATTAAA
* ** * * *
107752706 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
107752771 CCCG
66 CCCG
* * *
107752775 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
107752840 GTCTTG
64 GCCCCG
* *
107752846 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
107752911 CCCCG
65 CCCCG
*
107752916 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
107752970 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:107752952 original size:263 final size:257
Alignment explanation
Indices: 107752544--107753136 Score: 1042
Period size: 257 Copynumber: 2.3 Consensus size: 257
107752534 ACAACGTAAA
* * * * * *
107752544 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107752609 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
107752674 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
107752739 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
107752804 TGATT
253 TGATT
107752809 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107752874 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
107752939 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
107753004 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
107753066 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
107753131 TTGATT
66 TTGATT
107753137 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:107759975 original size:37 final size:38
Alignment explanation
Indices: 107759875--107759976 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
107759865 ATATATTTGG
107759875 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
107759911 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
107759953 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
107759977 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:107760789 original size:16 final size:16
Alignment explanation
Indices: 107760770--107760806 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
107760760 TTTCTTCTTT
*
107760770 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGGTAGG
107760786 TTTTTTTTGGGGTAGG
1 TTTTTTTTGGGGTAGG
107760802 TTTTT
1 TTTTT
107760807 CTTTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.00, G:0.30, T:0.65
Consensus pattern (16 bp):
TTTTTTTTGGGGTAGG
Found at i:107760821 original size:16 final size:15
Alignment explanation
Indices: 107760802--107760837 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
107760792 TTGGGGTAGG
*
107760802 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
107760818 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
107760833 TTTTT
1 TTTTT
107760838 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:107761285 original size:29 final size:31
Alignment explanation
Indices: 107761253--107761328 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
107761243 TGACATGCCC
107761253 ATATTATTTTTAATTT-T-TTTAA-AATATTT
1 ATATTATTTTTAATTTATATTTAATAAT-TTT
107761282 ATATTA-TTTTAATTTAATATTTAATAATTTT
1 ATATTATTTTTAATTT-ATATTTAATAATTTT
107761313 ATA-TATTTTT-ATTTAT
1 ATATTATTTTTAATTTAT
107761329 TAAATTTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
28 9 0.21
29 8 0.19
30 7 0.17
31 15 0.36
32 3 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATATTATTTTTAATTTATATTTAATAATTTT
Found at i:107761320 original size:24 final size:24
Alignment explanation
Indices: 107761293--107761342 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
107761283 TATTATTTTA
107761293 ATTTAATATTTAAT-AATTTTATAT
1 ATTT-ATATTTAATAAATTTTATAT
* * *
107761317 ATTTTTATTTATTAAATTTTTTAT
1 ATTTATATTTAATAAATTTTATAT
107761341 AT
1 AT
107761343 AGTCATCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
ATTTATATTTAATAAATTTTATAT
Found at i:107761327 original size:30 final size:31
Alignment explanation
Indices: 107761253--107761327 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 31
107761243 TGACATGCCC
107761253 ATATTATTTTTAATTT--T-TTTAAAATATTT
1 ATATTA-TTTTAATTTAATATTTAAAATATTT
107761282 ATATTATTTTAATTTAATATTTAATAAT-TTT
1 ATATTATTTTAATTTAATATTTAA-AATATTT
*
107761313 ATA-TATTTTTATTTA
1 ATATTATTTTAATTTA
107761328 TTAAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
28 9 0.22
29 6 0.15
30 12 0.29
31 11 0.27
32 3 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATATTATTTTAATTTAATATTTAAAATATTT
Found at i:107762675 original size:23 final size:23
Alignment explanation
Indices: 107762640--107762685 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
107762630 ATTATTACAA
*
107762640 AAAGCAAGCAGTACTATAGACAT
1 AAAGCAAACAGTACTATAGACAT
*
107762663 AAAGCAAATAGTACTATAGACAT
1 AAAGCAAACAGTACTATAGACAT
107762686 CATTACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (23 bp):
AAAGCAAACAGTACTATAGACAT
Found at i:107762676 original size:54 final size:54
Alignment explanation
Indices: 107762609--107762720 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
107762599 AAATAGTACC
* * *
107762609 AAAGCAGACAGTACTATACACATTATTACAAAAAGCAAGCAGTACTATAGACAT
1 AAAGCAAACAGTACTATACACATCATTACAAAAAGCAAACAGTACTATAGACAT
* * * *
107762663 AAAGCAAATAGTACTATAGACATCATTACATAAAGCAAACAGTATTATAGACAT
1 AAAGCAAACAGTACTATACACATCATTACAAAAAGCAAACAGTACTATAGACAT
107762717 AAAG
1 AAAG
107762721 TAGCTGATTC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.21
Consensus pattern (54 bp):
AAAGCAAACAGTACTATACACATCATTACAAAAAGCAAACAGTACTATAGACAT
Found at i:107771656 original size:18 final size:17
Alignment explanation
Indices: 107771609--107771687 Score: 65
Period size: 18 Copynumber: 4.5 Consensus size: 17
107771599 TTAATATATA
107771609 TATAAATATATTATTTAAT
1 TATAAATATATTA-TT-AT
107771628 TATAAAGTATATTATTAT
1 TATAAA-TATATTATTAT
*
107771646 TGTAAAT-TA-TATTAAT
1 TATAAATATATTATT-AT
*
107771662 TAT-ATTATATTATTATAT
1 TATAAATATATTA-T-TAT
107771680 TATAAATA
1 TATAAATA
107771688 AACCAAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
15 6 0.12
16 8 0.16
17 3 0.06
18 13 0.27
19 12 0.24
20 7 0.14
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TATAAATATATTATTAT
Found at i:107771678 original size:13 final size:14
Alignment explanation
Indices: 107771651--107771683 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
107771641 ATTATTGTAA
107771651 ATTATATTAATTAT
1 ATTATATTAATTAT
107771665 ATTATATT-ATTAT
1 ATTATATTAATTAT
107771678 ATTATA
1 ATTATA
107771684 AATAAACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTATATTAATTAT
Found at i:107771686 original size:34 final size:36
Alignment explanation
Indices: 107771603--107771686 Score: 86
Period size: 38 Copynumber: 2.3 Consensus size: 36
107771593 ATGTTTTTAA
*
107771603 TATATATATAAA-TATATTATTTAATTATAAAGTATAT
1 TATAT-TATAAATTATATTAATTAATTAT-AAGTATAT
*
107771640 TATTATTGTAAATTATATTAATTATATTAT-A-T-TAT
1 TA-TATTATAAATTATATTAATTA-ATTATAAGTATAT
107771675 TATATTATAAAT
1 TATATTATAAAT
107771687 AAACCAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
34 9 0.22
35 5 0.12
36 1 0.02
37 8 0.20
38 13 0.32
39 5 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (36 bp):
TATATTATAAATTATATTAATTAATTATAAGTATAT
Found at i:107771857 original size:19 final size:19
Alignment explanation
Indices: 107771833--107771883 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
107771823 TAAACTAATT
* *
107771833 AAATAAAGGAAATAAAAAG
1 AAATAAAAGAAAGAAAAAG
*
107771852 AAATAAAAGATAGAAAAAG
1 AAATAAAAGAAAGAAAAAG
*
107771871 AGATAAATAGAAA
1 AAATAAA-AGAAA
107771884 CAGAATAGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.12
Consensus pattern (19 bp):
AAATAAAAGAAAGAAAAAG
Found at i:107772852 original size:18 final size:18
Alignment explanation
Indices: 107772831--107772895 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
107772821 AATCACTGAC
107772831 TATTACTGAATAATTGAT
1 TATTACTGAATAATTGAT
* *
107772849 TATTACTGAACAACTGAT
1 TATTACTGAATAATTGAT
***
107772867 TGCCACTGAATAATTGA-
1 TATTACTGAATAATTGAT
107772884 TAGTTACTGAAT
1 TA-TTACTGAAT
107772896 GATATTAGTA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
17 1 0.03
18 35 0.97
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
TATTACTGAATAATTGAT
Found at i:107772926 original size:18 final size:19
Alignment explanation
Indices: 107772905--107772942 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
107772895 TGATATTAGT
*
107772905 AAATTGATTGATATTGAAA
1 AAATTGACTGATATTGAAA
107772924 AATATTGACTGATATTGAA
1 AA-ATTGACTGATATTGAA
107772943 CAATTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.45, C:0.03, G:0.16, T:0.37
Consensus pattern (19 bp):
AAATTGACTGATATTGAAA
Found at i:107777391 original size:47 final size:49
Alignment explanation
Indices: 107777269--107777448 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
107777259 TGTAACCCGC
* * * *
107777269 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
107777315 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
107777365 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
107777409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
107777449 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:107777437 original size:94 final size:93
Alignment explanation
Indices: 107777277--107777448 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
107777267 GCCCATAAGT
* * *
107777277 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
107777342 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
107777370 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
107777435 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
107777449 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:107785686 original size:44 final size:44
Alignment explanation
Indices: 107785584--107785744 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
107785574 GTCGATGCCG
* * *
107785584 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
107785630 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
107785674 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
107785720 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
107785745 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:107785761 original size:46 final size:43
Alignment explanation
Indices: 107785627--107785789 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
107785617 CCGTGCTGAC
*
107785627 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
107785671 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
107785717 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
107785763 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
107785790 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:107788360 original size:47 final size:49
Alignment explanation
Indices: 107788238--107788417 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
107788228 TGTAACCCGC
* * * *
107788238 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
107788284 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
107788334 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
107788378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
107788418 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:107788406 original size:94 final size:93
Alignment explanation
Indices: 107788246--107788417 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
107788236 GCCCATAAGT
* * *
107788246 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
107788311 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
107788339 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
107788404 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
107788418 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:107793326 original size:14 final size:14
Alignment explanation
Indices: 107793307--107793336 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
107793297 AAAGTAAAAG
107793307 AATAATAAATGAAT
1 AATAATAAATGAAT
107793321 AATAATAAATGAAT
1 AATAATAAATGAAT
107793335 AA
1 AA
107793337 ATAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (14 bp):
AATAATAAATGAAT
Found at i:107800784 original size:19 final size:18
Alignment explanation
Indices: 107800738--107800791 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
107800728 TGACAATCTT
*
107800738 TTTAAA-AAATAAAACATA
1 TTTAAAGAAACAAAA-ATA
*
107800756 -TTAAAGAAACCAAAATA
1 TTTAAAGAAACAAAAATA
107800773 TTTAAAGAAAACAAAAATA
1 TTTAAAG-AAACAAAAATA
107800792 AACCATGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 8 0.27
18 12 0.40
19 10 0.33
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (18 bp):
TTTAAAGAAACAAAAATA
Found at i:107803128 original size:24 final size:24
Alignment explanation
Indices: 107803096--107803146 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
107803086 TAGTATAAAG
107803096 ACAAATGTATAG-TAAATAAAATAT
1 ACAAATGTATAGATAAA-AAAATAT
* * *
107803120 ACAAGTGTATGGATAAAAATATAT
1 ACAAATGTATAGATAAAAAAATAT
107803144 ACA
1 ACA
107803147 TTTGTAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (24 bp):
ACAAATGTATAGATAAAAAAATAT
Found at i:107805461 original size:46 final size:46
Alignment explanation
Indices: 107805404--107805678 Score: 320
Period size: 46 Copynumber: 6.0 Consensus size: 46
107805394 AGTGTGCTCT
* *
107805404 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
107805450 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
107805496 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
107805542 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * **
107805587 ATTGACGGGAAAACGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 -CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * * *
107805635 ATGACA-GAAAACTAGTAAAACCATAGTTAAAAGATACTATGGCA
1 CTGACATGAAATGT-GTAAGACCATGGTTGAAAGATACCATGGCA
107805679 TCTTGTCGAA
Statistics
Matches: 203, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
45 5 0.02
46 158 0.78
47 38 0.19
48 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:107808586 original size:30 final size:30
Alignment explanation
Indices: 107808557--107808656 Score: 130
Period size: 30 Copynumber: 3.3 Consensus size: 30
107808547 CTTAGCCTTT
*
107808557 TCCACCACCAACTCCACTAGCCACACCTT-T
1 TCCACCACCAACTCCACTAGCCACA-CTTGC
*
107808587 TCCACCACCAAATCCACTAGCCACACTTGC
1 TCCACCACCAACTCCACTAGCCACACTTGC
** * *
107808617 TCCATTACCTACTCCACTAACCACACTTGC
1 TCCACCACCAACTCCACTAGCCACACTTGC
107808647 TCCACCACCA
1 TCCACCACCA
107808657 CTTGTACCTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 3 0.05
30 56 0.95
ACGTcount: A:0.28, C:0.48, G:0.04, T:0.20
Consensus pattern (30 bp):
TCCACCACCAACTCCACTAGCCACACTTGC
Found at i:107809254 original size:31 final size:30
Alignment explanation
Indices: 107809210--107809286 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 30
107809200 ATTTTAAATT
* *
107809210 CTATATTACGTATATATATATATATATTATA
1 CTATTTTATGTATATATATATA-ATATTATA
* *
107809241 CTATTTTATGTATATATCTTTAATATTATA
1 CTATTTTATGTATATATATATAATATTATA
* *
107809271 TTA-TTTATATATATAT
1 CTATTTTATGTATATAT
107809287 TTTTTCTACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 12 0.30
30 10 0.25
31 18 0.45
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (30 bp):
CTATTTTATGTATATATATATAATATTATA
Found at i:107809255 original size:25 final size:26
Alignment explanation
Indices: 107809226--107809370 Score: 75
Period size: 25 Copynumber: 5.6 Consensus size: 26
107809216 TACGTATATA
*
107809226 TATATATATATT-ATACTATTTTATG
1 TATATATATATTAATACTATATTATG
* * *
107809251 TATATATCT-TTAATATTATATTATT
1 TATATATATATTAATACTATATTATG
** * * *
107809276 TATATATATATTTTTTCTACATGTTATCT
1 TATATATATATTAATACT--ATATTAT-G
* *
107809305 TATGTATATATCTTA-ACTATATTATG
1 TATATATATAT-TAATACTATATTATG
* * *
107809331 TATGTAT-TTTTAACACTATATTATG
1 TATATATATATTAATACTATATTATG
* *
107809356 TACATAT-TTTTAATA
1 TATATATATATTAATA
107809371 TTATCACGTA
Statistics
Matches: 93, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
24 4 0.04
25 51 0.55
26 11 0.12
27 6 0.06
28 6 0.06
29 13 0.14
30 2 0.02
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATATATATTAATACTATATTATG
Found at i:107809554 original size:16 final size:15
Alignment explanation
Indices: 107809530--107809577 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107809520 TAATTATTAT
*
107809530 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
107809546 TATTTTAATATTTTA
1 TATTTTAATATTTTA
107809561 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
107809577 T
1 T
107809578 TATTCACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:107809565 original size:7 final size:8
Alignment explanation
Indices: 107809530--107809581 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
107809520 TAATTATTAT
*
107809530 TATTCTAA
1 TATTTTAA
*
107809538 TATTTTGA
1 TATTTTAA
107809546 TATTTTAA
1 TATTTTAA
107809554 TATTTT-A
1 TATTTTAA
107809561 TATTTTATA
1 TATTTTA-A
*
107809570 TATTTTAT
1 TATTTTAA
107809578 TATT
1 TATT
107809582 CACATTATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:107821663 original size:89 final size:89
Alignment explanation
Indices: 107821512--107822116 Score: 931
Period size: 89 Copynumber: 6.8 Consensus size: 89
107821502 TGTTCCAAAG
* * *
107821512 ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACACTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
107821577 TTTCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* *
107821601 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
107821666 TTCCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* * * * * *
107821690 ATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
107821755 TTTCAATTTCTACTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
107821779 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
107821844 TTTCAATTCCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* * * * ** *
107821868 ATCAACTCATATTACGAGAGGTGGGTTAAGCCTCAGGACACGCTGAGGTATTTTTGATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
* *
107821933 TTCCAATTTCTACTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* *
107821957 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
107822022 TTTCAATTTCTGCTCTTCAAAGAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* * * *
107822046 ATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
107822111 TGTCAA
66 TTTCAA
107822117 AAATCAACTC
Statistics
Matches: 463, Mismatches: 53, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 463 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTCTGCTCTTCAAAAAA
Found at i:107822176 original size:75 final size:75
Alignment explanation
Indices: 107822021--107822259 Score: 301
Period size: 73 Copynumber: 3.2 Consensus size: 75
107822011 CAATTTATGT
* * *
107822021 TTTTCAATTTCTGCTCT-TCAAAGAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAG--
1 TTTTCAATTTCTG-TTTGTC-AA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCT
*
107822083 -ACACGCTGAGGTA
62 CACATGCTGAGGTA
* *
107822096 ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
*
107822161 TGCTGAGGTC
66 TGCTGAGGTA
* * *
107822171 TTTTCAATTTCTGTTCGTC--AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCGCA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
107822234 TGCTGAGGTA
66 TGCTGAGGTA
*
107822244 TTTTCAATTTTTGTTT
1 TTTTCAATTTCTGTTT
107822260 TTTTAATTTA
Statistics
Matches: 145, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
72 1 0.01
73 98 0.68
74 4 0.03
75 42 0.29
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
TGCTGAGGTA
Found at i:107823185 original size:30 final size:30
Alignment explanation
Indices: 107823151--107823315 Score: 217
Period size: 30 Copynumber: 5.5 Consensus size: 30
107823141 TAAATCTTAG
107823151 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
107823181 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
107823211 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* *
107823241 TCTTTTCCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
107823271 -CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
107823301 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
107823316 CTTGTACCTA
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 118 0.98
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:107823897 original size:27 final size:27
Alignment explanation
Indices: 107823854--107823941 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
107823844 ATATATTAGG
*
107823854 TATAT-TTTAAATTCTATATTATATATA
1 TATATATTT-AATACTATATTATATATA
*
107823881 TATATATATT-ATACTAT-TT-TATGTA
1 TATATAT-TTAATACTATATTATATATA
* * *
107823906 TATATCTTTAATATTATATTATTTATA
1 TATATATTTAATACTATATTATATATA
107823933 TATATATTT
1 TATATATTT
107823942 TTTTTCTACA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
24 2 0.04
25 17 0.35
26 4 0.08
27 23 0.47
28 1 0.02
29 2 0.04
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (27 bp):
TATATATTTAATACTATATTATATATA
Found at i:107823907 original size:50 final size:52
Alignment explanation
Indices: 107823819--107823939 Score: 133
Period size: 50 Copynumber: 2.4 Consensus size: 52
107823809 ATATTTCTTA
* *
107823819 ATATTATAT-TATATATATTCTTTTAATATATTAGGTATAT-T-TTAAAT-TCT
1 ATATTATATATATATATA-TATTATAATATATTAGGTATATATCTTAAATAT-T
* * * *
107823869 ATATTATATATATATATATATTATACTATTTTATGTATATATCTTTAATATT
1 ATATTATATATATATATATATTATAATATATTAGGTATATATCTTAAATATT
*
107823921 ATATTATTTATATATATAT
1 ATATTATATATATATATAT
107823940 TTTTTTTCTA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 26 0.43
51 9 0.15
52 24 0.40
53 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (52 bp):
ATATTATATATATATATATATTATAATATATTAGGTATATATCTTAAATATT
Found at i:107823987 original size:22 final size:24
Alignment explanation
Indices: 107823959--107824017 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
107823949 ACATGTTATC
107823959 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
107823981 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
107824006 TTATGTACATAT
1 TTATGTATATAT
107824018 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:107824007 original size:25 final size:25
Alignment explanation
Indices: 107823975--107824023 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
107823965 ATATATCTTA
**
107823975 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
107824000 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
107824024 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:107824202 original size:16 final size:15
Alignment explanation
Indices: 107824178--107824225 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107824168 TCATTATTAT
*
107824178 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
107824194 TATTTTAATATTTTA
1 TATTTTAATATTTTA
107824209 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
107824225 T
1 T
107824226 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:107824213 original size:7 final size:8
Alignment explanation
Indices: 107824178--107824229 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
107824168 TCATTATTAT
*
107824178 TATTCTAA
1 TATTTTAA
*
107824186 TATTTTGA
1 TATTTTAA
107824194 TATTTTAA
1 TATTTTAA
107824202 TATTTT-A
1 TATTTTAA
107824209 TATTTTATA
1 TATTTTA-A
*
107824218 TATTTTAT
1 TATTTTAA
107824226 TATT
1 TATT
107824230 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:107827091 original size:16 final size:17
Alignment explanation
Indices: 107827066--107827098 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
107827056 TGATCATAGC
107827066 ATTATCATA-CATTTTT
1 ATTATCATACCATTTTT
*
107827082 ATTATTATACCATTTTT
1 ATTATCATACCATTTTT
107827099 GTCATTACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTATCATACCATTTTT
Found at i:107829474 original size:21 final size:20
Alignment explanation
Indices: 107829440--107829484 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
107829430 CTAAAATGTG
*
107829440 AATTGGATTGAATTGAATATA
1 AATTGGATTAAATTGAAT-TA
* *
107829461 AATTGTATTAAATTGAGTTA
1 AATTGGATTAAATTGAATTA
107829481 AATT
1 AATT
107829485 TACTCGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (20 bp):
AATTGGATTAAATTGAATTA
Found at i:107835542 original size:15 final size:15
Alignment explanation
Indices: 107835522--107835551 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107835512 AATAATAATT
107835522 ATAATAGTAAAAATA
1 ATAATAGTAAAAATA
*
107835537 ATAATAGTAATAATA
1 ATAATAGTAAAAATA
107835552 GCTAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAGTAAAAATA
Found at i:107835664 original size:18 final size:18
Alignment explanation
Indices: 107835641--107835706 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
107835631 AAATATATAT
107835641 TAATAATAGTAATAAATA
1 TAATAATAGTAATAAATA
107835659 TAATAATAGTAATAAATAGA
1 TAATAATAGTAATAAAT--A
* *
107835679 AAATAATAGTACAT-TA-A
1 TAATAATAGTA-ATAAATA
107835696 TAATAATAGTA
1 TAATAATAGTA
107835707 TATGTTGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 11 0.26
18 17 0.40
20 12 0.29
21 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.32
Consensus pattern (18 bp):
TAATAATAGTAATAAATA
Found at i:107835843 original size:27 final size:27
Alignment explanation
Indices: 107835771--107835825 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
107835761 AAAATATGTT
* * *
107835771 AATAAAAATAACAGTAGTAGTAATAAA
1 AATAAAAATAAAAATAATAGTAATAAA
107835798 AATAAAAATAAAAATAATAGTAATAAA
1 AATAAAAATAAAAATAATAGTAATAAA
107835825 A
1 A
107835826 TAGAGAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (27 bp):
AATAAAAATAAAAATAATAGTAATAAA
Found at i:107835972 original size:3 final size:3
Alignment explanation
Indices: 107835966--107836084 Score: 100
Period size: 3 Copynumber: 39.7 Consensus size: 3
107835956 ATAGTTGTAG
* * * * * * *
107835966 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
107836013 T-A TAA -AA AAA TAA TAA TAG TAA CGGAGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA --TA-A TAA TAA TAA TAA TAA TAA
107836059 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
107836085 TAAAATATAA
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
2 6 0.07
3 83 0.90
4 1 0.01
5 1 0.01
6 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:107836010 original size:20 final size:21
Alignment explanation
Indices: 107835971--107836010 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
107835961 TGTAGTAATA
*
107835971 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
107835992 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
107836011 AATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:107840097 original size:23 final size:22
Alignment explanation
Indices: 107840071--107840116 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
107840061 TGTGATGACG
107840071 TTATCTT-ATAAATATGTATGAAT
1 TTATCTTGA-AAATATGT-TGAAT
107840094 TTATCTTGAAAATATGTTGAAT
1 TTATCTTGAAAATATGTTGAAT
107840116 T
1 T
107840117 GATTTGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TTATCTTGAAAATATGTTGAAT
Found at i:107840719 original size:41 final size:40
Alignment explanation
Indices: 107840672--107840788 Score: 119
Period size: 41 Copynumber: 2.9 Consensus size: 40
107840662 CCTGTATCTC
* * * *
107840672 ACACCGGCACAAGGCCTGCTAGACTCAAAGTCTGATTTTAT
1 ACACCGGCA-AAGGCCTGCTAGGCTCAAAGCCCGATTTAAT
*
107840713 ACACCGGCAATAAGCCTGCTAGGCAT-AAAGCCCGATTTAAT
1 ACACCGGCAA-AGGCCTGCTAGGC-TCAAAGCCCGATTTAAT
* * *
107840754 TCACCAGCAAAAGGCTTGCTAGGCTCAAAGCCCGA
1 ACACCGGC-AAAGGCCTGCTAGGCTCAAAGCCCGA
107840789 ATATCACTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
40 2 0.03
41 58 0.92
42 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (40 bp):
ACACCGGCAAAGGCCTGCTAGGCTCAAAGCCCGATTTAAT
Found at i:107860143 original size:69 final size:69
Alignment explanation
Indices: 107860032--107860167 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
107860022 ATCATGCCAT
*
107860032 CCAACTCGCATGTTGCTTTCTACCATATCATTCAAATGAAGTTTTACCATAACGTTCCTCTAGTT
1 CCAACTCGCATGTTGCTTTCTACCACATCATTCAAATGAAGTTTTACCATAACGTTCCTCTAGTT
107860097 TGGA
66 TGGA
* *
107860101 CCAACTCGCATGTTGCTTTCTATCACATCATTCAAATGAAGTTTTACCATAACGTTCCTTTAGTT
1 CCAACTCGCATGTTGCTTTCTACCACATCATTCAAATGAAGTTTTACCATAACGTTCCTCTAGTT
107860166 TG
66 TG
107860168 AAACATTTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (69 bp):
CCAACTCGCATGTTGCTTTCTACCACATCATTCAAATGAAGTTTTACCATAACGTTCCTCTAGTT
TGGA
Found at i:107864250 original size:21 final size:21
Alignment explanation
Indices: 107864224--107864264 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107864214 ATCTGCTCAA
* *
107864224 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
107864245 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
107864265 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:107868437 original size:28 final size:28
Alignment explanation
Indices: 107868405--107868490 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 28
107868395 TAGAGAGAAC
107868405 AAAACTATTATATTTTTTTAAAT-AATCT
1 AAAACTATTATATTTTTTTAAATAAAT-T
* *
107868433 AAAACTCATCATATATTTTTTAGATAAATT
1 AAAACT-ATTATAT-TTTTTTAAATAAATT
* *
107868463 TAAACATATTATATTTTTAT-AATAAATT
1 AAAAC-TATTATATTTTTTTAAATAAATT
107868491 GCAAAGGGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
28 13 0.27
29 11 0.23
30 20 0.42
31 4 0.08
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (28 bp):
AAAACTATTATATTTTTTTAAATAAATT
Found at i:107871805 original size:43 final size:43
Alignment explanation
Indices: 107871744--107871828 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
107871734 AAAAGCAAGG
107871744 GCATTGGTGCTTAATGATGGAATCGAACGGTTTGGAGGAATAT
1 GCATTGGTGCTTAATGATGGAATCGAACGGTTTGGAGGAATAT
107871787 GCATTGGTGCTTAATGATGGAATCGAACGGTTTGGAGGAATA
1 GCATTGGTGCTTAATGATGGAATCGAACGGTTTGGAGGAATA
107871829 GTTTGAGTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (43 bp):
GCATTGGTGCTTAATGATGGAATCGAACGGTTTGGAGGAATAT
Found at i:107872339 original size:23 final size:23
Alignment explanation
Indices: 107872313--107872358 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
107872303 ACGAAAAATC
107872313 AAATGCTTGACCATCTTACCAAA
1 AAATGCTTGACCATCTTACCAAA
*
107872336 AAATGCTTGATCATCTTACCAAA
1 AAATGCTTGACCATCTTACCAAA
107872359 GAAAATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (23 bp):
AAATGCTTGACCATCTTACCAAA
Found at i:107873933 original size:33 final size:33
Alignment explanation
Indices: 107873896--107873968 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
107873886 GAAAAAATCC
107873896 TTAAA-AAGAAAAAAAGTAAATGTGAAGTAGCCT
1 TTAAAGAA-AAAAAAAGTAAATGTGAAGTAGCCT
107873929 TTAAAGAAAAAAAAAGTAAATGTGAAGTAGCCT
1 TTAAAGAAAAAAAAAGTAAATGTGAAGTAGCCT
107873962 TTAAAGA
1 TTAAAGA
107873969 CTTTGGTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 37 0.95
34 2 0.05
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.22
Consensus pattern (33 bp):
TTAAAGAAAAAAAAAGTAAATGTGAAGTAGCCT
Found at i:107874916 original size:18 final size:18
Alignment explanation
Indices: 107874893--107874934 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
107874883 GTTTCTTGGT
* * *
107874893 TTATTTTGTTTAGTTTTA
1 TTATTTTGATTACTTTAA
107874911 TTATTTTGATTACTTTAA
1 TTATTTTGATTACTTTAA
107874929 TTATTT
1 TTATTT
107874935 AGGTTATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (18 bp):
TTATTTTGATTACTTTAA
Found at i:107881068 original size:11 final size:11
Alignment explanation
Indices: 107881052--107881076 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
107881042 AGAAAATTAA
107881052 AATTTTAAAAT
1 AATTTTAAAAT
107881063 AATTTTAAAAT
1 AATTTTAAAAT
107881074 AAT
1 AAT
107881077 AATTTTGCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTTTAAAAT
Found at i:107888201 original size:2 final size:2
Alignment explanation
Indices: 107888194--107888223 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
107888184 ATTTAAAAAC
107888194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107888224 CAATTTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107889145 original size:12 final size:12
Alignment explanation
Indices: 107889128--107889161 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
107889118 ATATATATTT
*
107889128 AAAAATTATATA
1 AAAAATAATATA
107889140 AAAAATAATATA
1 AAAAATAATATA
*
107889152 AAAATTAATA
1 AAAAATAATA
107889162 CGGGCCAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:107889357 original size:27 final size:27
Alignment explanation
Indices: 107889318--107889369 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
107889308 CATGAACACC
*
107889318 TTTAATTGTAACTAATCATTCACATCT
1 TTTAATTGAAACTAATCATTCACATCT
*
107889345 TTTACTTGAAACTAATCATTCACAT
1 TTTAATTGAAACTAATCATTCACAT
107889370 TCTATAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (27 bp):
TTTAATTGAAACTAATCATTCACATCT
Found at i:107889920 original size:15 final size:15
Alignment explanation
Indices: 107889900--107889928 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
107889890 GACGCGAGCA
107889900 AGAAGAAGGCTGCTC
1 AGAAGAAGGCTGCTC
107889915 AGAAGAAGGCTGCT
1 AGAAGAAGGCTGCT
107889929 GCCGCTGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14
Consensus pattern (15 bp):
AGAAGAAGGCTGCTC
Found at i:107893914 original size:26 final size:26
Alignment explanation
Indices: 107893885--107893937 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
107893875 GTCCCTTTTA
107893885 AGCTTTTTAAACTTCTTCAAATAGAG
1 AGCTTTTTAAACTTCTTCAAATAGAG
107893911 AGCTTTTTAAACTTCTTCAAATAGAG
1 AGCTTTTTAAACTTCTTCAAATAGAG
107893937 A
1 A
107893938 TGATGAGGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (26 bp):
AGCTTTTTAAACTTCTTCAAATAGAG
Found at i:107900680 original size:13 final size:13
Alignment explanation
Indices: 107900662--107900686 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107900652 ATGGTATTGC
107900662 TTGAATGTTAATA
1 TTGAATGTTAATA
107900675 TTGAATGTTAAT
1 TTGAATGTTAAT
107900687 TACTTATAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGAATGTTAATA
Found at i:107901707 original size:15 final size:15
Alignment explanation
Indices: 107901687--107901715 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
107901677 GACGCGAGCA
107901687 AGAAGAAGGCTGCTC
1 AGAAGAAGGCTGCTC
107901702 AGAAGAAGGCTGCT
1 AGAAGAAGGCTGCT
107901716 GCCGCTGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14
Consensus pattern (15 bp):
AGAAGAAGGCTGCTC
Found at i:107911493 original size:2 final size:2
Alignment explanation
Indices: 107911486--107911523 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
107911476 ACAATAATAC
* *
107911486 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107911524 ATAGAAATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:107911904 original size:3 final size:3
Alignment explanation
Indices: 107911891--107911973 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
107911881 GAGGGCATAT
107911891 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
107911935 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
107911974 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:107911913 original size:12 final size:12
Alignment explanation
Indices: 107911889--107911970 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
107911879 GAGAGGGCAT
107911889 ATATAATATAATA
1 ATATAA-ATAATA
107911902 ATATAAATAATA
1 ATATAAATAATA
107911914 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
107911929 ATA-ATAATAATA
1 ATATA-AATAATA
107911941 ATATAAATAATA
1 ATATAAATAATA
* *
107911953 GTAAAAATAATA
1 ATATAAATAATA
*
107911965 AAATAA
1 ATATAA
107911971 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:107911932 original size:21 final size:18
Alignment explanation
Indices: 107911891--107911973 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
107911881 GAGGGCATAT
*
107911891 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
107911908 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
107911929 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
107911947 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
107911965 A-AATAATAA
1 ATAATAATAA
107911974 AACAAAGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:107911961 original size:27 final size:27
Alignment explanation
Indices: 107911889--107911974 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
107911879 GAGAGGGCAT
* *
107911889 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
107911916 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
107911941 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
107911967 ATAATAAA
1 AT-ATAAA
107911975 ACAAAGCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 7 0.15
26 5 0.11
27 20 0.43
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:107912332 original size:20 final size:21
Alignment explanation
Indices: 107912309--107912403 Score: 79
Period size: 22 Copynumber: 4.4 Consensus size: 21
107912299 TTCTTTCTAA
107912309 AAAAACAAAAAAA-CACCTCC
1 AAAAACAAAAAAACCACCTCC
*
107912329 AAAAA-AAAAAAACCTCCTCC
1 AAAAACAAAAAAACCACCTCC
*
107912349 -AAAACAAAGAACAATCCTCCTCC
1 AAAAACAAA-AA-AA-CCACCTCC
* * *
107912372 AAAAAACCAAAAACCCACCCCC
1 -AAAAACAAAAAAACCACCTCC
107912394 TAAAAACAAA
1 -AAAAACAAA
107912404 GTCTTGAATG
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
19 11 0.18
20 14 0.23
21 2 0.03
22 16 0.26
23 9 0.15
24 2 0.03
25 7 0.11
ACGTcount: A:0.59, C:0.33, G:0.01, T:0.07
Consensus pattern (21 bp):
AAAAACAAAAAAACCACCTCC
Found at i:107912371 original size:23 final size:20
Alignment explanation
Indices: 107912308--107912377 Score: 77
Period size: 20 Copynumber: 3.3 Consensus size: 20
107912298 CTTCTTTCTA
* *
107912308 AAAAAACAAAAAAACACCTCC
1 AAAAAA-AAAAAACCTCCTCC
107912329 AAAAAAAAAAAACCTCCTCC
1 AAAAAAAAAAAACCTCCTCC
*
107912349 AAAACAAAGAACAATCCTCCTCC
1 AAAA-AAA-AA-AAACCTCCTCC
107912372 AAAAAA
1 AAAAAA
107912378 CCAAAAACCC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 16 0.37
21 9 0.21
22 4 0.09
23 14 0.33
ACGTcount: A:0.61, C:0.29, G:0.01, T:0.09
Consensus pattern (20 bp):
AAAAAAAAAAAACCTCCTCC
Found at i:107912541 original size:4 final size:4
Alignment explanation
Indices: 107912532--107912566 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
107912522 GGCCAAGGTT
107912532 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
107912567 TTTGTGTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:107913087 original size:132 final size:132
Alignment explanation
Indices: 107912850--107913825 Score: 1713
Period size: 132 Copynumber: 7.4 Consensus size: 132
107912840 GATATCCGCT
* * **
107912850 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTGTCTTCGATCCGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
107912915 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGAGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107912980 AA
131 AA
107912982 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* *
107913047 AAGCACAGGGATACCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCTATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107913112 AA
131 AA
107913114 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
107913179 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107913244 AA
131 AA
*
107913246 ATCTTTGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* *
107913311 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107913376 AA
131 AA
*
107913378 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* *
107913443 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTACAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107913508 AA
131 AA
* * * **
107913510 ATCTTCGATCTGCTTCA-TCGTAAGCACAGTG-ATGCCAAATCTGCTATCTTCGATCCGTTCCCT
1 ATCTTTGATCTGCTTCACT-GTAAGCACAG-GAATGTCAGATCTGCTATCTTCGATTTGTTCCCT
* *
107913573 ATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGC
64 ATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
107913638 TGAA
129 TGAA
*
107913642 ATCTTTGATCTGCTTCACTGTAAGCACAGGCATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
107913707 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
107913772 AA
131 AA
*
107913774 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
107913826 GTCTGCTCCT
Statistics
Matches: 808, Mismatches: 32, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
131 2 0.00
132 804 1.00
133 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:107913962 original size:68 final size:68
Alignment explanation
Indices: 107913878--107914076 Score: 294
Period size: 68 Copynumber: 2.9 Consensus size: 68
107913868 TCTTCTTCCA
* * * *
107913878 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
107913943 -TT
66 CCT
* *
107913945 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
107914010 TCCT
65 TCCT
* *
107914014 CTGAAACTTCAAGGAGATCTGCCGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
107914077 AATTTGTAAT
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
67 6 0.05
68 112 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:107914371 original size:132 final size:130
Alignment explanation
Indices: 107914181--107915048 Score: 1089
Period size: 132 Copynumber: 6.6 Consensus size: 130
107914171 TAAATTCAAC
* * * *
107914181 CTGTTACCCTACTGGTTA-GGGGTTAAGATTTGTAAATCTTCAGTCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * **
107914245 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTT
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCG
107914310 AT
129 AT
* * *
107914312 CTGTTTCCCTACTGCTTAGGAGGTTAAGATCTGTAAATCTTTAGCCAGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
107914377 GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCG
107914442 AT
129 AT
107914444 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGA
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG-
* *
107914509 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGGCCATCATCTTCG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCG
107914574 AT
129 AT
* * *
107914576 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * *
107914638 GGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCT
65 GG-GTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGTTAAAG-CCCATCATCT
107914700 TCGAT
126 TCGAT
* *
107914705 CTATTTCTCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
*
107914770 GGGTTAAGGCTTGT-AATTTGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTCGA
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTCGA
107914834 T
130 T
* * * *
107914835 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTT-TGATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * *
107914897 GGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCT
65 GG-GTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGTTAAAG-CCCATCATCT
107914959 TCGAT
126 TCGAT
*
107914964 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGA
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG-
* *
107915029 GGGTTAAGACTTGTGAATTC
65 GGGTTAAGGCTTGTAAATTC
107915049 ACTGATTCTA
Statistics
Matches: 646, Mismatches: 65, Indels: 51
0.85 0.09 0.07
Matches are distributed among these distances:
127 7 0.01
128 68 0.11
129 113 0.17
130 75 0.12
131 105 0.16
132 275 0.43
133 3 0.00
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (130 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTCGAT
Found at i:107914733 original size:86 final size:85
Alignment explanation
Indices: 107914363--107915038 Score: 537
Period size: 86 Copynumber: 7.8 Consensus size: 85
107914353 TAGCCAGTTA
* * *
107914363 CCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGG-CTTGTTACCCTACTGCTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGTTAAGATC-TG-CAATTCGGTC-TGTTACCCTACTGCTTAGGGGGTT-
* * * *
107914426 AAGCCCATCATCTTTGATCTGTTT
62 AAGACCTTCGTCTTCGATCTGTTT
* * * *
107914450 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTG-CAA--TTCGGTCTGTTACCCTACTGCTTAGGGGGTTA
* * * * *
107914515 AG-GCTT-GTAAATTTG-GCTTGTTA
63 AGACCTTCGT--CTTCGATC-TGTTT
** * * *
107914538 CCCTACTGCTTAGGGGGTTAAAGGCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGTT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACTGCTTAGGGGGTTA
* *
107914602 AGATCTTCATCTTCGATCTGTTT
63 AGACCTTCGTCTTCGATCTGTTT
* * * * *
107914625 CCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGA
1 CCCTACTGCTTAGGGGGTTAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGA
*
107914690 CCCTTCGTCTTCGATCTATTT
66 -CCTTCGTCTTCGATCTGTTT
* * * *
107914711 CTCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTG-CAA--TTCGGTCTGTTACCCTACTGCTTAGGGGGTTA
* * * * *
107914776 AG-GCTT-GTAATTTG-GCTTGTTA
63 AGACCTTCGT-CTTCGATC-TGTTT
** * * *
107914798 CCCTACTGCTTA-GGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGTT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACTGCTTAGGGGGTTA
* * *
107914861 AGATCTTCATCTTTGATCTGTTT
63 AGACCTTCGTCTTCGATCTGTTT
* * * * *
107914884 CCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGA
1 CCCTACTGCTTAGGGGGTTAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGA
107914949 CCCTTCGTCTTCGATCTGTTT
66 -CCTTCGTCTTCGATCTGTTT
* * * * *
107914970 CCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTG-CAA--TTCGGTCTGTTACCCTACTGCTTAGGGGGTTA
107915035 AGAC
63 AGAC
107915039 TTGTGAATTC
Statistics
Matches: 467, Mismatches: 90, Indels: 63
0.75 0.15 0.10
Matches are distributed among these distances:
85 92 0.20
86 128 0.27
87 117 0.25
88 38 0.08
89 90 0.19
90 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (85 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGGTTAAGA
CCTTCGTCTTCGATCTGTTT
Found at i:107914848 original size:43 final size:43
Alignment explanation
Indices: 107914094--107915036 Score: 452
Period size: 43 Copynumber: 21.7 Consensus size: 43
107914084 AATTTGCAGC
* * *
107914094 CTGTTACCCTACTACTTAGGGGTTTAAGACCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGTCATCTTCGAT
* * * * * ** * *
107914138 CTATT-TCCTAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCT-ACTGCTTAGGGGGTTAAG-CCCGTCATCTTCGAT
* *** *
107914181 CTGTTACCCTACTGGTTA-GGGGTTAAGATTTGTAAATCTTC-AGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGT-CATCTTCGA-T
* *** ** *
107914225 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGT-AAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCGTCATCTTCGAT
* * **
107914267 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCGTCATCTTCGAT
* * * * * * *
107914312 CTGTTTCCCTACTGCTTAGGAGGTTAAGATCTGTAAATCTT-TAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGT-CATCTTCGA-T
* * ** ** *
107914357 CAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCGTCATCTTCGAT
* *
107914399 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCGTCATCTTCGAT
* * * * *
107914444 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGT-CATCTTCGA-T
* ** * * *
107914489 CTGTTACCCTACTGCTTAGAGGGTTAAGGCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCGT-CATCTTCGAT
* *
107914533 -TGTTACCCTACTGCTTAGGGGGTTAAAGGCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGCCCGTCATCTTCGAT
* ** *
107914576 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCGTCATCTTCGAT
* * * ** * *
107914619 CTGTTTCCCTACTGCTTAGGGAGATAAGATC-TGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCGT-CATCTTCGAT
* * * * *
107914661 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGTCATCTTCGAT
* * * * * * *
107914705 CTATTTCTCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGT-CATCTTCGA-T
** * * *
107914750 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCGTCATCTTCGAT
*
107914793 -TGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGCCCGTCATCTTCGAT
* ** * *
107914835 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCGTCATCTTCGAT
* * * ** * *
107914878 CTGTTTCCCTACTGCTTAGGGAGATAAGATC-TGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCGT-CATCTTCGAT
* * * * *
107914920 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGTCATCTTCGAT
* * * * * *
107914964 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCGT-CATCTTCGA-T
*
107915009 CTGTTACCCTACTGCTTAGAGGGTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
107915037 ACTTGTGAAT
Statistics
Matches: 689, Mismatches: 163, Indels: 93
0.73 0.17 0.10
Matches are distributed among these distances:
41 11 0.02
42 96 0.14
43 225 0.33
44 210 0.30
45 143 0.21
46 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGCCCGTCATCTTCGAT
Found at i:107914908 original size:259 final size:260
Alignment explanation
Indices: 107914188--107915047 Score: 1297
Period size: 259 Copynumber: 3.3 Consensus size: 260
107914178 AACCTGTTAC
* * *
107914188 CCTACTGGTTA-GGGGTTAAGATTTGTAAATCTTCAGTCTGTTACCCTACTGCTTAG-GGGTTTA
1 CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGG-TTA
* * * **
107914251 AGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTGT
65 AGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
* * * * *
107914316 TTCCCTACTGCTTAGGAGGTTAAGATCTGTAAATCTTT-AGCCAGTTACCCTACTGCTTAGGG-G
130 TTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTTGA-TCTGTTTCCCTACTGCTTAGGGAG
* * * * * * * * *
107914379 TTTAAG-GCTTGTAAATTCGG-CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTT
192 -ATAAGATC-TG-CAATTCGGTC-TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCGTCTTC
107914441 GATCTGTTT
252 GATCTGTTT
107914450 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
1 -CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
*
107914515 AGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGGCCATCATCTTCGATCTGT
65 AGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
*
107914580 TTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATA
130 TTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTTGATCTGTTTCCCTACTGCTTAGGGAGATA
*
107914645 AGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTATT
195 AGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTT
107914710 T
260 T
*
107914711 CTCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
1 C-CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
107914776 AGGCTTGT-AATTTGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGATCTGT
65 AGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
107914839 TTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTTGATCTGTTTCCCTACTGCTTAGGGAGATA
130 TTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTTGATCTGTTTCCCTACTGCTTAGGGAGATA
107914904 AGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTT
195 AGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTT
107914969 T
260 T
107914970 CCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
1 CC-TACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTA
* *
107915035 AGACTTGTGAATT
65 AGGCTTGTAAATT
107915048 CACTGATTCT
Statistics
Matches: 556, Mismatches: 31, Indels: 23
0.91 0.05 0.04
Matches are distributed among these distances:
258 1 0.00
259 226 0.41
260 31 0.06
261 117 0.21
262 32 0.06
263 14 0.03
264 132 0.24
265 3 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (260 bp):
CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGAGGGTTAA
GGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTT
TCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTTGATCTGTTTCCCTACTGCTTAGGGAGATAA
GATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
Found at i:107915206 original size:66 final size:66
Alignment explanation
Indices: 107915100--107915226 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
107915090 TCTATGCTTA
*
107915100 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
107915165 G
66 G
*
107915166 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
107915227 TATATGAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:107916387 original size:16 final size:16
Alignment explanation
Indices: 107916368--107916411 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
107916358 TTTTTAGAAT
107916368 TTTTTTTGTTTTTGTG
1 TTTTTTTGTTTTTGTG
*
107916384 TTTTTGTGTTTTTGTG
1 TTTTTTTGTTTTTGTG
107916400 TTTTTTT-TTTTT
1 TTTTTTTGTTTTT
107916412 TTTTTTACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (16 bp):
TTTTTTTGTTTTTGTG
Found at i:107916417 original size:8 final size:8
Alignment explanation
Indices: 107916368--107916404 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
107916358 TTTTTAGAAT
*
107916368 TTTTTTTG
1 TTTTTGTG
107916376 TTTTTGTG
1 TTTTTGTG
107916384 TTTTTGTG
1 TTTTTGTG
107916392 TTTTTGTG
1 TTTTTGTG
107916400 TTTTT
1 TTTTT
107916405 TTTTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (8 bp):
TTTTTGTG
Found at i:107916434 original size:12 final size:12
Alignment explanation
Indices: 107916417--107916450 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
107916407 TTTTTTTTTT
*
107916417 TACCTTTGCCTT
1 TACCTTTGCCTC
*
107916429 TGCCTTTGCCTC
1 TACCTTTGCCTC
107916441 TACCTTTGCC
1 TACCTTTGCC
107916451 ATATAACGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.38, G:0.12, T:0.44
Consensus pattern (12 bp):
TACCTTTGCCTC
Found at i:107919230 original size:19 final size:20
Alignment explanation
Indices: 107919206--107919252 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
107919196 AGTGAAAGTT
107919206 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
107919225 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
107919245 -AATGCAAA
1 TAATGCAAA
107919253 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:107921804 original size:2 final size:2
Alignment explanation
Indices: 107921797--107921837 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
107921787 AAAACAATAC
107921797 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA -A TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107921836 TA
1 TA
107921838 ATAGTAGCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:107922047 original size:3 final size:3
Alignment explanation
Indices: 107922034--107922116 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
107922024 GAGGGCATAT
107922034 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
107922078 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
107922117 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:107922056 original size:12 final size:12
Alignment explanation
Indices: 107922032--107922113 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
107922022 GAGAGGGCAT
107922032 ATATAATATAATA
1 ATATAA-ATAATA
107922045 ATATAAATAATA
1 ATATAAATAATA
107922057 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
107922072 ATA-ATAATAATA
1 ATATA-AATAATA
107922084 ATATAAATAATA
1 ATATAAATAATA
* *
107922096 GTAAAAATAATA
1 ATATAAATAATA
*
107922108 AAATAA
1 ATATAA
107922114 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:107922075 original size:21 final size:18
Alignment explanation
Indices: 107922034--107922116 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
107922024 GAGGGCATAT
*
107922034 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
107922051 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
107922072 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
107922090 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
107922108 A-AATAATAA
1 ATAATAATAA
107922117 AACAAAGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Done.