Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 360 of 378
Found at i:107922104 original size:27 final size:27
Alignment explanation
Indices: 107922032--107922117 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
107922022 GAGAGGGCAT
* *
107922032 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
107922059 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
107922084 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
107922110 ATAATAAA
1 AT-ATAAA
107922118 ACAAAGCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 7 0.15
26 5 0.11
27 20 0.43
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:107922433 original size:22 final size:22
Alignment explanation
Indices: 107922398--107922517 Score: 88
Period size: 20 Copynumber: 5.3 Consensus size: 22
107922388 TGATTAATCT
* * *
107922398 CAAAAACTAGCCTTTCCAAGAAA
1 CAAAAAC-AACCTCTCCAAAAAA
107922421 CAAAAACAACCTTCTTTCCAAAAAA
1 CAAAAACAACC-TC--TCCAAAAAA
*
107922446 CAAAAA-AAAC-CTCCAAAAAA
1 CAAAAACAACCTCTCCAAAAAA
*
107922466 TAAAAA-AACCTCCTCC--AAAA
1 CAAAAACAACCT-CTCCAAAAAA
107922486 CAAAGAACAATCCTCTCCAAAAAA
1 CAAA-AACAA-CCTCTCCAAAAAA
107922510 CCAAAAAC
1 -CAAAAAC
107922518 CCACCCCCTA
Statistics
Matches: 79, Mismatches: 7, Indels: 21
0.74 0.07 0.20
Matches are distributed among these distances:
20 24 0.30
21 2 0.03
22 14 0.18
23 11 0.14
24 10 0.13
25 18 0.23
ACGTcount: A:0.56, C:0.28, G:0.03, T:0.13
Consensus pattern (22 bp):
CAAAAACAACCTCTCCAAAAAA
Found at i:107922441 original size:25 final size:25
Alignment explanation
Indices: 107922409--107922457 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
107922399 AAAAACTAGC
* *
107922409 CTTTCCAAGAAACAAAAACAACCTT
1 CTTTCCAAAAAACAAAAAAAACCTT
107922434 CTTTCCAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAACAAAAAAAACCT
107922458 CCAAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.53, C:0.27, G:0.02, T:0.18
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAAAAACCTT
Found at i:107922463 original size:19 final size:19
Alignment explanation
Indices: 107922437--107922478 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
107922427 CAACCTTCTT
*
107922437 TCCAAAAAACAAAAAAAACC
1 TCCAAAAAA-TAAAAAAACC
107922457 TCCAAAAAATAAAAAAACC
1 TCCAAAAAATAAAAAAACC
107922476 TCC
1 TCC
107922479 TCCAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.64, C:0.26, G:0.00, T:0.10
Consensus pattern (19 bp):
TCCAAAAAATAAAAAAACC
Found at i:107922485 original size:20 final size:20
Alignment explanation
Indices: 107922442--107922507 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 20
107922432 TTCTTTCCAA
**
107922442 AAAACAAAAAAAACCTCC-AA
1 AAAAC-AAAAAAACCTCCTCC
*
107922462 AAAATAAAAAAACCTCCTCC
1 AAAACAAAAAAACCTCCTCC
107922482 AAAACAAAGAACAATCCT-CTCC
1 AAAACAAA-AA-AA-CCTCCTCC
107922504 AAAA
1 AAAA
107922508 AACCAAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 12 0.32
20 11 0.29
21 2 0.05
22 10 0.26
23 3 0.08
ACGTcount: A:0.61, C:0.27, G:0.02, T:0.11
Consensus pattern (20 bp):
AAAACAAAAAAACCTCCTCC
Found at i:107923433 original size:15 final size:14
Alignment explanation
Indices: 107923406--107923432 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107923396 GACAATAGTA
107923406 AAATATTAAAAAAT
1 AAATATTAAAAAAT
107923420 AAATATTAAAAAA
1 AAATATTAAAAAA
107923433 AGGCATGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATATTAAAAAAT
Found at i:107924423 original size:26 final size:26
Alignment explanation
Indices: 107924394--107924502 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
107924384 TGATACAAAT
107924394 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
107924420 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
107924446 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
107924472 TGATAATGGTTTAGGTAAAT-TTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107924497 TGATAA
1 TGATAA
107924503 GAAATTTCAT
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 11 0.14
26 66 0.86
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107924813 original size:13 final size:13
Alignment explanation
Indices: 107924795--107924822 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
107924785 TGAATTAAAA
107924795 TGAAGGAAATGGT
1 TGAAGGAAATGGT
107924808 TGAAGGAAATGGT
1 TGAAGGAAATGGT
107924821 TG
1 TG
107924823 TGTTTCATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.39, T:0.25
Consensus pattern (13 bp):
TGAAGGAAATGGT
Found at i:107926559 original size:136 final size:137
Alignment explanation
Indices: 107926278--107926552 Score: 507
Period size: 136 Copynumber: 2.0 Consensus size: 137
107926268 GAGTAGTCTC
107926278 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
107926343 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTAGCCCAGTACC
107926408 ACTGTTA
131 ACTGTTA
* *
107926415 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGTCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
107926479 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTAGCCCAGTACC
107926544 ACTGTTA
131 ACTGTTA
107926551 CC
1 CC
107926553 TGAATGGCTT
Statistics
Matches: 134, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 114 0.85
137 20 0.15
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:107929325 original size:5 final size:5
Alignment explanation
Indices: 107929315--107929341 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
107929305 TATAAGTAAT
107929315 TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TA
107929342 ATAATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:107929635 original size:21 final size:20
Alignment explanation
Indices: 107929601--107929645 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
107929591 TCATGTTGAA
**
107929601 TAAATTGAAGAATTTGGAGT
1 TAAATTGAAGAATTTCAAGT
107929621 TAAATTGATAGAATTTCAAGT
1 TAAATTGA-AGAATTTCAAGT
107929642 TAAA
1 TAAA
107929646 AGTGAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (20 bp):
TAAATTGAAGAATTTCAAGT
Found at i:107937934 original size:17 final size:18
Alignment explanation
Indices: 107937901--107937934 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
107937891 ATCAATAATT
*
107937901 CCACAATATTCAACACAA
1 CCACAATATTAAACACAA
107937919 CCACAAT-TTAAACACA
1 CCACAATATTAAACACA
107937935 CAGTTTCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (18 bp):
CCACAATATTAAACACAA
Found at i:107940782 original size:2 final size:2
Alignment explanation
Indices: 107940777--107940810 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
107940767 TGTTTTTTTC
107940777 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
107940811 TATATAGACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:107942381 original size:3 final size:3
Alignment explanation
Indices: 107942373--107942512 Score: 110
Period size: 3 Copynumber: 46.7 Consensus size: 3
107942363 ATAGTATGAC
* * * * *
107942373 AAT AAT AAT AAT AGT AAC AAA AAA AAT AAT AAC AA- ATAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * *
107942417 ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAC AGT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
107942463 AAT AAT ACA- AAT AAG AAT ACT CAA- AAT AAT AAT AA- ACAT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT
107942508 AAT AA
1 AAT AA
107942513 ATATAAGACT
Statistics
Matches: 111, Mismatches: 16, Indels: 20
0.76 0.11 0.14
Matches are distributed among these distances:
2 6 0.05
3 100 0.90
4 5 0.05
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:107943974 original size:47 final size:47
Alignment explanation
Indices: 107943865--107943975 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
107943855 TCGGGATAAG
*
107943865 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* ** *
107943912 CACAAAGCACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
107943959 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
107943976 ACTCAAGGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:107946482 original size:31 final size:30
Alignment explanation
Indices: 107946447--107946505 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
107946437 CACCCTTAAA
* * * *
107946447 ATATTTTCACTATTATTCCTTCAACTTTTTC
1 ATATTTACACT-TTAATCCCTCAAATTTTTC
107946478 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAATCCCTCAAATTTT
107946506 AAGTATTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (30 bp):
ATATTTACACTTTAATCCCTCAAATTTTTC
Found at i:107946799 original size:62 final size:62
Alignment explanation
Indices: 107946712--107946854 Score: 196
Period size: 62 Copynumber: 2.3 Consensus size: 62
107946702 TTATGCGATG
* * * * *
107946712 AACAGTAAGTTACACGGCCTAGGCACACGCCTGTGTCTCTGGTCGTATAGTTTTATACCATA
1 AACAGTGAGTTACACGGCTTAGGCACACGCCCGTGTCCCTGGCCGTATAGTTTTATACCATA
* * *
107946774 AACAGTGAGTTACACGGCTTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTTTATACCATA
1 AACAGTGAGTTACACGGCTTAGGCACACGCCCGTGTCCCTGGCCGTATAGTTTTATACCATA
* *
107946836 AACAATGAGTTACAAGGCT
1 AACAGTGAGTTACACGGCT
107946855 GTTCGCACTG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 71 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (62 bp):
AACAGTGAGTTACACGGCTTAGGCACACGCCCGTGTCCCTGGCCGTATAGTTTTATACCATA
Found at i:107947442 original size:12 final size:12
Alignment explanation
Indices: 107947427--107947453 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
107947417 AAAAGAAATA
107947427 GAAGGAAGAAAG
1 GAAGGAAGAAAG
107947439 GAAGGAAGAAAG
1 GAAGGAAGAAAG
107947451 GAA
1 GAA
107947454 AAAGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (12 bp):
GAAGGAAGAAAG
Found at i:107947751 original size:24 final size:27
Alignment explanation
Indices: 107947722--107947771 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
107947712 CGTTATAATA
107947722 TTTATA-TA-ATTAAAATAT-TCATAT
1 TTTATATTATATTAAAATATGTCATAT
*
107947746 TTTATATTATGTTAAAATATGTCATA
1 TTTATATTATATTAAAATATGTCATA
107947772 AGTTCCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
26 9 0.41
27 5 0.23
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (27 bp):
TTTATATTATATTAAAATATGTCATAT
Found at i:107948147 original size:18 final size:18
Alignment explanation
Indices: 107948116--107948163 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
107948106 ATATATAAAG
*
107948116 AATATTATATAAAATT-T
1 AATATTAAATAAAATTGT
*
107948133 ATTATTGAAATAAAATTGT
1 AATATT-AAATAAAATTGT
107948152 AATATTAAATAA
1 AATATTAAATAA
107948164 TTTATCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 5 0.19
18 15 0.58
19 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATAAAATTGT
Found at i:107948189 original size:31 final size:32
Alignment explanation
Indices: 107948140--107948200 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
107948130 TTTATTATTG
107948140 AAATAAAATTGTAATATTAAATA-ATTTATCA
1 AAATAAAATTGTAATATTAAATATATTTATCA
* *
107948171 AAATAATAATT-TATTATTAATTATATTTAT
1 AAATAA-AATTGTAATATTAAATATATTTAT
107948201 AATTTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (32 bp):
AAATAAAATTGTAATATTAAATATATTTATCA
Found at i:107948198 original size:16 final size:16
Alignment explanation
Indices: 107948179--107948217 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
107948169 CAAAATAATA
107948179 ATTTATTATTAATTAT
1 ATTTATTATTAATTAT
* *
107948195 ATTTATAATTTATTAT
1 ATTTATTATTAATTAT
107948211 A-TTATTA
1 ATTTATTA
107948218 AATATAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTATTATTAATTAT
Found at i:107948484 original size:26 final size:25
Alignment explanation
Indices: 107948432--107948488 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
107948422 AGTTATATTA
* * * *
107948432 TTTTTTATTTTTAAAGAATTTTTAT
1 TTTTTTATTTTTAAAAAAATATAAT
107948457 TTTTTTCATTTTTAAAAAAATATAAT
1 TTTTTT-ATTTTTAAAAAAATATAAT
107948483 TTTTTT
1 TTTTTT
107948489 GTTTAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTTTTATTTTTAAAAAAATATAAT
Found at i:107948499 original size:18 final size:17
Alignment explanation
Indices: 107948478--107948511 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
107948468 TTAAAAAAAT
*
107948478 ATAATTTTTTTGTTTAAA
1 ATAAGTTTTTT-TTTAAA
107948496 ATAAGTTTTTTTTTAA
1 ATAAGTTTTTTTTTAA
107948512 TTACGTACGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
ATAAGTTTTTTTTTAAA
Found at i:107955322 original size:16 final size:17
Alignment explanation
Indices: 107955296--107955328 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
107955286 GGTCTGTCTG
*
107955296 TATTAATTTTTTTATAA
1 TATTAATTTTTATATAA
107955313 TATT-ATTTTTATATAA
1 TATTAATTTTTATATAA
107955329 AAACAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TATTAATTTTTATATAA
Found at i:107957315 original size:31 final size:32
Alignment explanation
Indices: 107957280--107957339 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
107957270 TATTTTGTAC
*
107957280 TTAATTGAGCCA-TTGAACATTAAAATTATAA
1 TTAATTAAGCCATTTGAACATTAAAATTATAA
* * *
107957311 TTAATTAAGTCATTTGACCTTTAAAATTA
1 TTAATTAAGCCATTTGAACATTAAAATTA
107957340 ACGATCAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 10 0.42
32 14 0.58
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (32 bp):
TTAATTAAGCCATTTGAACATTAAAATTATAA
Found at i:107958138 original size:20 final size:19
Alignment explanation
Indices: 107958121--107958159 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
107958111 TATTTTTTTG
107958121 CAATTTTCTATATATTTTAA
1 CAATTTTCTATAT-TTTTAA
*
107958141 TAATTTTCTATATTTTTAA
1 CAATTTTCTATATTTTTAA
107958160 TATTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (19 bp):
CAATTTTCTATATTTTTAA
Found at i:107958170 original size:55 final size:55
Alignment explanation
Indices: 107958105--107958212 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
107958095 ATCTATATTT
* * * *
107958105 TATTTATATTTTTTTGCAATTTTCTATAT-ATTTTAATAATTTTCT-ATATTTTTAA
1 TATTTATATTTATTTACAA-TTTATATATCATGTTAATAATTTT-TAATATTTTTAA
* *
107958160 TATTTTTATTTATTTATAATTTATATATCATGTTAATAATTTTTAATATTTTT
1 TATTTATATTTATTTACAATTTATATATCATGTTAATAATTTTTAATATTTTT
107958213 TCTCCAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 9 0.20
55 36 0.80
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (55 bp):
TATTTATATTTATTTACAATTTATATATCATGTTAATAATTTTTAATATTTTTAA
Found at i:107958221 original size:21 final size:21
Alignment explanation
Indices: 107958197--107958237 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107958187 TCATGTTAAT
*
107958197 AATTTTTAATATTTTTTCTCC
1 AATTTTTAATATCTTTTCTCC
*
107958218 AATTTTTTATATCTTTTCTC
1 AATTTTTAATATCTTTTCTC
107958238 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (21 bp):
AATTTTTAATATCTTTTCTCC
Found at i:107958334 original size:29 final size:28
Alignment explanation
Indices: 107958300--107958381 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 28
107958290 TTTTTCTTCT
*
107958300 ATTTTTATAATCTTTAATATGTTTAATATG
1 ATTTTTATAAT-TTTAATATATTT-ATATG
* *
107958330 -TTTTTAATAATTTTTATATATTTGTATG
1 ATTTTT-ATAATTTTAATATATTTATATG
*
107958358 AATTTTTATAATTTTAATAAATTT
1 -ATTTTTATAATTTTAATATATTT
107958382 TCAATAATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 4 0.09
29 30 0.68
30 10 0.23
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (28 bp):
ATTTTTATAATTTTAATATATTTATATG
Found at i:107958343 original size:9 final size:9
Alignment explanation
Indices: 107958300--107958391 Score: 53
Period size: 10 Copynumber: 9.4 Consensus size: 9
107958290 TTTTTCTTCT
*
107958300 ATTTTTATA
1 ATTTTAATA
107958309 ATCTTTAAT-
1 AT-TTTAATA
107958318 ATGTTTAATA
1 AT-TTTAATA
*
107958328 TGTTTTTAATA
1 --ATTTTAATA
*
107958339 ATTTTTATA
1 ATTTTAATA
107958348 TATTTGT-ATGA
1 -ATTT-TAAT-A
*
107958359 ATTTTTATA
1 ATTTTAATA
107958368 ATTTTAATAA
1 ATTTTAAT-A
107958378 ATTTTCAATA
1 ATTTT-AATA
107958388 ATTT
1 ATTT
107958392 CAAATATAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
9 26 0.39
10 28 0.42
11 12 0.18
12 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (9 bp):
ATTTTAATA
Found at i:107958348 original size:20 final size:20
Alignment explanation
Indices: 107958300--107958382 Score: 68
Period size: 20 Copynumber: 4.2 Consensus size: 20
107958290 TTTTTCTTCT
*
107958300 ATTTTTATA-ATCTTTAAT-
1 ATTTTTATATATTTTTAATA
* *
107958318 ATGTTTAATATGTTTTTAATA
1 AT-TTTTATATATTTTTAATA
*
107958339 ATTTTTATATATTTGT-ATGA
1 ATTTTTATATATTTTTAAT-A
107958359 ATTTTTATA-A-TTTTAATAA
1 ATTTTTATATATTTTTAAT-A
107958378 ATTTT
1 ATTTT
107958383 CAATAATTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
18 5 0.10
19 17 0.33
20 28 0.54
21 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (20 bp):
ATTTTTATATATTTTTAATA
Found at i:107958390 original size:29 final size:27
Alignment explanation
Indices: 107958300--107958391 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 27
107958290 TTTTTCTTCT
107958300 ATTTTTATAATCTTTAAT-ATGTTTAATA
1 ATTTTTATAAT-TTTAATAAT-TTTAATA
* *
107958328 TGTTTTTAATAATTTTTATATATTTGT-ATGA
1 -ATTTTT-ATAATTTTAATA-ATTT-TAAT-A
107958359 ATTTTTATAATTTTAATAAATTTTCAATA
1 ATTTTTATAATTTTAAT-AATTTT-AATA
107958388 ATTT
1 ATTT
107958392 CAAATATAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
28 1 0.02
29 29 0.57
30 17 0.33
31 4 0.08
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (27 bp):
ATTTTTATAATTTTAATAATTTTAATA
Found at i:107958700 original size:30 final size:31
Alignment explanation
Indices: 107958661--107958719 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
107958651 TTTTATTTGA
* *
107958661 TATAAATTACAT-AATATACAAAAATAAAAC
1 TATAAATTACATAAATAAAAAAAAATAAAAC
*
107958691 TATATATTACATAAATAAAAAAAAATAAA
1 TATAAATTACATAAATAAAAAAAAATAAA
107958720 TTGGACTGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (31 bp):
TATAAATTACATAAATAAAAAAAAATAAAAC
Found at i:107959050 original size:14 final size:15
Alignment explanation
Indices: 107959025--107959061 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
107959015 TTTGATGAAA
107959025 TTAATA-TTATTTT-
1 TTAATATTTATTTTC
107959038 TTAATATTTATTTTC
1 TTAATATTTATTTTC
107959053 TTAA-ATTTA
1 TTAATATTTA
107959062 GTCTATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.27
14 12 0.55
15 4 0.18
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATATTTATTTTC
Found at i:107971597 original size:3 final size:3
Alignment explanation
Indices: 107971589--107971629 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
107971579 TATATTTTAG
107971589 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
107971630 GTAGTGATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:107972783 original size:14 final size:14
Alignment explanation
Indices: 107972764--107972802 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
107972754 CCATGCATCC
*
107972764 CTCAACATTCAACA
1 CTCAACATGCAACA
107972778 CTCAACATGCAACA
1 CTCAACATGCAACA
107972792 -TGCAACATGCA
1 CT-CAACATGCA
107972803 TGCATGCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 1 0.04
14 22 0.96
ACGTcount: A:0.41, C:0.33, G:0.08, T:0.18
Consensus pattern (14 bp):
CTCAACATGCAACA
Found at i:107975726 original size:17 final size:18
Alignment explanation
Indices: 107975698--107975733 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
107975688 CTTCTAATAG
107975698 TATATATTTTTATAAATT
1 TATATATTTTTATAAATT
*
107975716 TATAT-TTTTTATATATT
1 TATATATTTTTATAAATT
107975733 T
1 T
107975734 TTAAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TATATATTTTTATAAATT
Found at i:107978208 original size:20 final size:20
Alignment explanation
Indices: 107978150--107978212 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 20
107978140 TCCATTAAAT
* * *
107978150 TATTAAATGTCATAAAATAT
1 TATTAAATATTATAAAATAC
* *
107978170 TA-AAAAAATT-TAAAA-AC
1 TATTAAATATTATAAAATAC
107978187 TATTAAATATTATAAAATAC
1 TATTAAATATTATAAAATAC
107978207 TATTAA
1 TATTAA
107978213 TAATTTATGA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 3 0.09
18 11 0.33
19 9 0.27
20 10 0.30
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (20 bp):
TATTAAATATTATAAAATAC
Found at i:107978315 original size:1 final size:1
Alignment explanation
Indices: 107978309--107978336 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
107978299 ACTAAAGCCC
107978309 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
107978337 CTTCCCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:107984984 original size:16 final size:16
Alignment explanation
Indices: 107984960--107985006 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
107984950 GCAAAATAGT
*
107984960 TGTTATTCAGAACAAC
1 TGTTGTTCAGAACAAC
*
107984976 TGTTGTTCAAGAATAAC
1 TGTTGTTC-AGAACAAC
*
107984993 T-ATGTTCAGAACAA
1 TGTTGTTCAGAACAA
107985007 GACTTTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 6 0.23
16 12 0.46
17 8 0.31
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (16 bp):
TGTTGTTCAGAACAAC
Found at i:107993359 original size:3 final size:3
Alignment explanation
Indices: 107993351--107993380 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
107993341 TAAGGAAAAT
*
107993351 AAG AAG AAG AAG AAG AAG AGG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
107993381 CAAACCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:107993681 original size:17 final size:17
Alignment explanation
Indices: 107993659--107993696 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
107993649 TTAGTCTATG
107993659 TAATTTA-TTTTTATTT
1 TAATTTAGTTTTTATTT
107993675 ATAATTTAGTTTTTATTT
1 -TAATTTAGTTTTTATTT
107993693 TAAT
1 TAAT
107993697 AATATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TAATTTAGTTTTTATTT
Found at i:107994294 original size:17 final size:17
Alignment explanation
Indices: 107994272--107994304 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
107994262 GTTTACTTTC
107994272 TTATATAATT-TTTAAAT
1 TTATAT-ATTATTTAAAT
107994289 TTATATATTATTTAAA
1 TTATATATTATTTAAA
107994305 AATTAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATATTATTTAAAT
Found at i:108003397 original size:21 final size:22
Alignment explanation
Indices: 108003372--108003431 Score: 97
Period size: 21 Copynumber: 2.8 Consensus size: 22
108003362 AAAAATAGCG
*
108003372 GTAGCGGTGAGATTAG-TTATT
1 GTAGCGGTGAGATTAGAATATT
108003393 GTAGCGGTGAGATT-GAATATT
1 GTAGCGGTGAGATTAGAATATT
108003414 GTAGCGGTGAGATTAGAA
1 GTAGCGGTGAGATTAGAA
108003432 ACAATAGTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.89
22 3 0.08
ACGTcount: A:0.28, C:0.05, G:0.35, T:0.32
Consensus pattern (22 bp):
GTAGCGGTGAGATTAGAATATT
Found at i:108006820 original size:30 final size:30
Alignment explanation
Indices: 108006786--108006848 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
108006776 ATTTATTTTA
108006786 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
108006816 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
108006846 TTG
1 TTG
108006849 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:108007323 original size:2 final size:2
Alignment explanation
Indices: 108007316--108007367 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
108007306 TCTCTATGAA
108007316 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108007358 AT AT AT AT AT
1 AT AT AT AT AT
108007368 GGAATTGGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108008535 original size:35 final size:32
Alignment explanation
Indices: 108008489--108008576 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 32
108008479 TTTGGTACCT
108008489 ATACAAGTAGAAATCTCAATGTTAAATACAGACCC
1 ATACAAGTAGAAATCTCAATGTT--ATACA-ACCC
* *
108008524 ATACAAGTAGAAATCTC-A-GCT-TGCAACCC
1 ATACAAGTAGAAATCTCAATGTTATACAACCC
108008553 ATACAAGTAGAAATCTCAATGTTA
1 ATACAAGTAGAAATCTCAATGTTA
108008577 GGTATAGACC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
29 21 0.45
30 4 0.09
31 2 0.04
33 2 0.04
34 1 0.02
35 17 0.36
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.24
Consensus pattern (32 bp):
ATACAAGTAGAAATCTCAATGTTATACAACCC
Found at i:108008711 original size:21 final size:21
Alignment explanation
Indices: 108008685--108008727 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
108008675 AACCAAAGGG
108008685 ATAAATTTCAGCTTAACACTT
1 ATAAATTTCAGCTTAACACTT
108008706 ATAAATTTCAGCTTAACACTT
1 ATAAATTTCAGCTTAACACTT
108008727 A
1 A
108008728 CAATCACAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (21 bp):
ATAAATTTCAGCTTAACACTT
Found at i:108011013 original size:2 final size:2
Alignment explanation
Indices: 108011006--108011045 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
108010996 TTAATGAATG
108011006 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108011046 TTTATATCGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108011322 original size:14 final size:14
Alignment explanation
Indices: 108011297--108011332 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
108011287 CAAGTGCTTA
108011297 ATATAT-AGTATAG
1 ATATATAAGTATAG
*
108011310 ATATATAAGTATAT
1 ATATATAAGTATAG
108011324 ATATATAAG
1 ATATATAAG
108011333 AGTAATGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (14 bp):
ATATATAAGTATAG
Found at i:108012740 original size:22 final size:22
Alignment explanation
Indices: 108012701--108012749 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
108012691 ACTTTTTTTC
*
108012701 ATTATTTTGCTATAATTTCACT
1 ATTATATTGCTATAATTTCACT
* * * *
108012723 ATTATATTGTTATTATTTTATT
1 ATTATATTGCTATAATTTCACT
108012745 ATTAT
1 ATTAT
108012750 TTGAATATTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (22 bp):
ATTATATTGCTATAATTTCACT
Found at i:108015958 original size:13 final size:14
Alignment explanation
Indices: 108015942--108015977 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
108015932 CAATCTCATA
108015942 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
108015955 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
108015968 TCTC-ATTTCA
1 TCTCAATTTCA
108015978 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:108015967 original size:18 final size:19
Alignment explanation
Indices: 108015929--108015969 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
108015919 TGGTTCATGT
108015929 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
108015948 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
108015966 TTTC
1 TTTC
108015970 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:108016159 original size:39 final size:38
Alignment explanation
Indices: 108016092--108016226 Score: 92
Period size: 39 Copynumber: 3.4 Consensus size: 38
108016082 ACCAATATGG
* * * *
108016092 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATAATTGA
* * * *
108016131 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATAATTGA
* * * * *
108016169 TACCCAGTACCTCATCGAATCTATCCGAAGAAATACAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATA-ATTGA
*
108016210 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
108016227 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATAATTGA
Found at i:108016492 original size:18 final size:19
Alignment explanation
Indices: 108016466--108016504 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
108016456 TTTCAATTCA
108016466 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
108016485 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
108016503 AT
1 AT
108016505 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:108017832 original size:5 final size:5
Alignment explanation
Indices: 108017822--108017874 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
108017812 TTACTTATTT
* *
108017822 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
108017870 ATATA
1 ATATA
108017875 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:108017838 original size:12 final size:12
Alignment explanation
Indices: 108017821--108017876 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
108017811 TTTACTTATT
108017821 TATATAATATAA
1 TATATAATATAA
108017833 TATATAATATAATA
1 TATATAATAT-A-A
108017847 TACTATAATATAA
1 TA-TATAATATAA
*
108017860 TA-ATAATTTAA
1 TATATAATATAA
108017871 TATATA
1 TATATA
108017877 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:108018262 original size:40 final size:40
Alignment explanation
Indices: 108018218--108018297 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
108018208 CTAATCTTTC
108018218 TATTTTAATATAGTATACATTTCATGTGTTATAATTAATT
1 TATTTTAATATAGTATACATTTCATGTGTTATAATTAATT
108018258 TATTTTAATATAGTATACATTTCATGTGTTATAATTAATT
1 TATTTTAATATAGTATACATTTCATGTGTTATAATTAATT
108018298 AGCTTCAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (40 bp):
TATTTTAATATAGTATACATTTCATGTGTTATAATTAATT
Found at i:108041362 original size:2 final size:2
Alignment explanation
Indices: 108041357--108041387 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
108041347 GGCTGATGCT
*
108041357 GA GA GA GA GT GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
108041388 GAAACTAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.52, T:0.03
Consensus pattern (2 bp):
GA
Found at i:108043606 original size:18 final size:18
Alignment explanation
Indices: 108043574--108043608 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108043564 AACCTTTAAC
**
108043574 ATTAAATATTTAATATAT
1 ATTAAATATAAAATATAT
108043592 ATTAAATATAAAATATA
1 ATTAAATATAAAATATA
108043609 ATAAATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTAAATATAAAATATAT
Found at i:108046065 original size:2 final size:2
Alignment explanation
Indices: 108046058--108046099 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
108046048 AGTAACTACA
108046058 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108046100 TTCCCCTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108047753 original size:15 final size:14
Alignment explanation
Indices: 108047735--108047768 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
108047725 TCTTCTTTTT
108047735 TTTTTTTGGGTTAGG
1 TTTTTTTGGG-TAGG
108047750 TTTTTTTGGGTAGG
1 TTTTTTTGGGTAGG
108047764 TTTTT
1 TTTTT
108047769 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.65
Consensus pattern (14 bp):
TTTTTTTGGGTAGG
Found at i:108047784 original size:17 final size:17
Alignment explanation
Indices: 108047764--108047799 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
108047754 TTTGGGTAGG
108047764 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
108047781 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
108047798 TT
1 TT
108047800 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:108047794 original size:12 final size:11
Alignment explanation
Indices: 108047764--108047797 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
108047754 TTTGGGTAGG
108047764 TTTTTCTTTTTC
1 TTTTT-TTTTTC
108047776 TTTTTTTTTTC
1 TTTTTTTTTTC
108047787 TTTGTTTTTTT
1 TTT-TTTTTTT
108047798 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:108048649 original size:30 final size:30
Alignment explanation
Indices: 108048613--108048674 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
108048603 TTTTGAAAAA
108048613 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
108048643 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
108048673 CA
1 CA
108048675 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:108048788 original size:13 final size:13
Alignment explanation
Indices: 108048770--108048803 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
108048760 TGAGTTGATT
*
108048770 TTTGAAAACAGAA
1 TTTGAAAAAAGAA
*
108048783 TTTGAAAAAAGAT
1 TTTGAAAAAAGAA
108048796 TTTGAAAA
1 TTTGAAAA
108048804 TACCTCGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.29
Consensus pattern (13 bp):
TTTGAAAAAAGAA
Found at i:108049111 original size:72 final size:73
Alignment explanation
Indices: 108048821--108049350 Score: 420
Period size: 72 Copynumber: 6.8 Consensus size: 73
108048811 ACATGTAACC
* * * *
108048821 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
108048886 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
108048899 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
108048964 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
108048977 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
108049042 ACGTGTCT
66 GCGTGTCT
* ** * *
108049050 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
108049114 GCGTGTCC
66 GCGTGTCT
*
108049122 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAAGGCAGAAATTGAAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTTGAAA-ACAGAAATTG----
** ** *
108049187 ATGGAAATTGAAAATACCTCGACGTGTGAT
55 A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
108049217 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
108049282 CAGCGTGTC-
64 CAGCGTGTCT
*
108049291 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCA-AAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
108049351 ACGGAAATTG
Statistics
Matches: 368, Mismatches: 53, Indels: 66
0.76 0.11 0.14
Matches are distributed among these distances:
72 66 0.18
73 30 0.08
74 52 0.14
75 23 0.06
76 14 0.04
77 41 0.11
78 5 0.01
79 59 0.16
80 11 0.03
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 2 0.01
88 1 0.00
90 11 0.03
91 11 0.03
94 4 0.01
95 1 0.00
96 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:108049302 original size:170 final size:167
Alignment explanation
Indices: 108049018--108049493 Score: 741
Period size: 164 Copynumber: 2.9 Consensus size: 167
108049008 TGATTTTTTG
* * * ** *
108049018 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
108049081 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
108049145 ATATGAGTTGATTTTTTTTTTTTGAAAGGCAGAAATTGA
131 ATATGAGTTGA-TTTTTTTTTTTGAAAGGCA-AAATTGA
*
108049184 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
108049249 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
108049314 AATATGAGTTGA----TTTTTTTGAAAGGCAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAATTGA
* * * *
108049348 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
108049413 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
108049478 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
108049494 GAAAAAGTAG
Statistics
Matches: 286, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
164 143 0.50
165 15 0.05
166 27 0.09
167 1 0.00
168 31 0.11
170 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (167 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAATTGA
Found at i:108049313 original size:74 final size:75
Alignment explanation
Indices: 108049190--108049350 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
108049180 TTGAAAAATG
*
108049190 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
108049255 TTTTGACAACA
65 TTTTGACAACA
* * *
108049266 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
108049329 TTTTGA-AAGGCA
65 TTTTGACAA--CA
108049341 -AAATTGAAAA
1 GAAATTGAAAA
108049351 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
73 2 0.03
74 51 0.66
75 3 0.04
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:108049435 original size:90 final size:87
Alignment explanation
Indices: 108049266--108049439 Score: 251
Period size: 90 Copynumber: 2.0 Consensus size: 87
108049256 TTTGACAACA
* * *
108049266 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
108049331 TTGAAAGGCAAAATTGAAAAACG
66 TTGAAA-GCAAAATTGAAAAACG
* *
108049354 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
108049419 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCA-AAATTGAAA
108049440 TTACCTCAGC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
88 22 0.29
89 2 0.03
90 51 0.66
91 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (87 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAATTGAAAAACG
Found at i:108049479 original size:74 final size:75
Alignment explanation
Indices: 108049354--108049493 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
108049344 TTGAAAAACG
* *
108049354 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
108049419 TTTTGACAACA
65 TTTTGACAACA
* * *
108049430 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
108049494 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:108049674 original size:71 final size:71
Alignment explanation
Indices: 108049558--108049722 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
108049548 TGAACAACGT
* * *
108049558 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
108049623 GAGTTG
66 GAGTTG
*
108049629 AAATT-AAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
108049693 TGAGTTG
65 TGAGTTG
**
108049700 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTG-AAAACAAAAATTGAAAA
108049723 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
70 3 0.04
71 70 0.82
72 9 0.11
73 3 0.04
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:108049880 original size:71 final size:70
Alignment explanation
Indices: 108049722--108049984 Score: 345
Period size: 70 Copynumber: 3.8 Consensus size: 70
108049712 AAAAATTAAA
* * * * *
108049722 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
108049785 GCCCG
66 GCCCG
* *
108049790 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
**
108049855 GTCTTG
66 G-CCCG
* * *
108049861 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
108049924 TGCCCCG
65 TG-CCCG
*
108049931 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
108049985 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
68 26 0.16
69 10 0.06
70 82 0.49
71 32 0.19
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCG
Found at i:108049948 original size:262 final size:256
Alignment explanation
Indices: 108049561--108050151 Score: 1031
Period size: 262 Copynumber: 2.3 Consensus size: 256
108049551 ACAACGTAAA
* * * * * *
108049561 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
108049626 TTGAAATTAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
66 TTG--ATTAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
108049691 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
129 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
108049756 TAAAACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
194 T-----A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
108049820 GATT
253 GATT
108049824 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
108049889 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATT-AAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
108049954 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
130 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
108050019 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
108050081 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
108050146 TTGATT
66 TTGATT
108050152 TTCCTTGAAA
Statistics
Matches: 319, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
256 22 0.07
257 109 0.34
261 3 0.01
262 123 0.39
263 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (256 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:108049958 original size:141 final size:140
Alignment explanation
Indices: 108049722--108049984 Score: 411
Period size: 141 Copynumber: 1.9 Consensus size: 140
108049712 AAAAATTAAA
* * *
108049722 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
108049787 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCA
66 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
108049851 ACGTGTCTTG
131 ACGTGTCTTG
* ** * *
108049861 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAA-ACAAAAACTAAAAATACCTCAGCGTG
108049926 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
65 -CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
108049985 GGCTTAACTC
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
139 33 0.30
140 23 0.21
141 39 0.35
142 16 0.14
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (140 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
ACGTGTCTTG
Found at i:108058933 original size:19 final size:20
Alignment explanation
Indices: 108058906--108058947 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
108058896 TTTTTTTGCA
* *
108058906 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
108058926 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
108058945 TTC
1 TTC
108058948 GTGAAAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:108066918 original size:66 final size:66
Alignment explanation
Indices: 108066806--108066971 Score: 219
Period size: 66 Copynumber: 2.5 Consensus size: 66
108066796 CATTCATACA
* * *
108066806 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTTAATCATAGCATCTTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
*
108066871 T
66 C
* * * * *
108066872 TCATTCATAACACGTTTAATTAAGAGCATTTGATTCATTTCGATCATATCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
108066937 C
66 C
* *
108066938 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
108066972 GACCATAGCA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
64 22 0.26
66 64 0.74
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
C
Found at i:108067384 original size:42 final size:42
Alignment explanation
Indices: 108067330--108067479 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 42
108067320 GAACCTTAAA
*
108067330 TCCCTAATCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
* * * * * * **
108067372 TCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGAACCTTAAA
1 TCCCTAAGCAGTAG-GGTAACAGGTTG-AATTGCAG-ATCTTATC
** *
108067416 TCCCTAAATAGTAGGGTAACAGGTTGAATTACAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
*
108067458 TCCCTAAGCAGTAGGGAAACAG
1 TCCCTAAGCAGTAGGGTAACAG
108067480 ATCGAAGACA
Statistics
Matches: 81, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
42 43 0.53
43 15 0.19
44 23 0.28
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (42 bp):
TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
Found at i:108067385 original size:86 final size:86
Alignment explanation
Indices: 108067284--108067557 Score: 356
Period size: 86 Copynumber: 3.2 Consensus size: 86
108067274 AGTGATTTTG
*
108067284 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
*
108067349 CAGGTTGAATTGCAGATCTTA
66 CAGGTTGAATTACAGATCTTA
* *
108067370 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAATCCCTAAAT-AGTAGGGTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCT-AATCAGTAGGGTA
108067434 ACAGGTTGAATTACAGATCTTA
65 ACAGGTTGAATTACAGATCTTA
* * *** ** *
108067456 TCTCCCTAAGCAGTAG-GGAAACAGATCGAAGACAAAGGGGCTTAACCCCCTAAGCAGTAGGGTA
1 TCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTA
* * *
108067520 ACAGGCTAAATTTATAGATCTTA
65 ACAGGTTGAA-TTACAGATCTTA
*
108067543 AC-CCCTAAGCAGTAG
1 TCTCCCTAAGCAGTAG
108067558 GGAAACGGAT
Statistics
Matches: 166, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
85 4 0.02
86 147 0.89
87 15 0.09
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (86 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
CAGGTTGAATTACAGATCTTA
Found at i:108067421 original size:44 final size:44
Alignment explanation
Indices: 108067286--108067422 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 44
108067276 TGATTTTGTC
* * *
108067286 TCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
* * * * * * * **
108067330 TCCCTAATCAGTAG-GGTAACAGGTTG-AATTGCAG-ATCTTATC
1 TCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGAACCTTAAA
108067372 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
108067416 TCCCTAA
1 TCCCTAA
108067423 ATAGTAGGGT
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
42 24 0.35
43 14 0.21
44 30 0.44
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (44 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
Found at i:108067587 original size:86 final size:85
Alignment explanation
Indices: 108067284--108067600 Score: 316
Period size: 86 Copynumber: 3.7 Consensus size: 85
108067274 AGTGATTTTG
* * * ** ** *
108067284 TCTCCCTAAGTAGTAGTGG-AGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTA
1 TCTCCCTAAGCAGTAG-GGAAACAGATCGAAGATGAAG-GGCTTAACCCCCTAAGCAGTAGGGTA
*
108067348 ACAGGTTGAATTGCAGATCTTA
64 ACAGGTTGAATTACAGATCTTA
* * ** ** **
108067370 TCTCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGAACCTTAAATCCCTAAATAGTAGGGTA
1 TCTCCCTAAGCAGTAG-GGAAACAGATCGAAGATGAAG-GGCTTAACCCCCTAAGCAGTAGGGTA
108067434 ACAGGTTGAATTACAGATCTTA
64 ACAGGTTGAATTACAGATCTTA
**
108067456 TCTCCCTAAGCAGTAGGGAAACAGATCGAAGACAAAGGGGCTTAACCCCCTAAGCAGTAGGGTAA
1 TCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GGGCTTAACCCCCTAAGCAGTAGGGTAA
* * *
108067521 CAGGCTAAATTTATAGATCTTA
65 CAGGTTGAA-TTACAGATCTTA
* * * *
108067543 AC-CCCTAAGCAGTAGGGAAACGGATCGAAGATGATGGGCTTTAACCCCCTAAGTAGTA
1 TCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGGGC-TTAACCCCCTAAGCAGTA
108067601 AGATCTTGCC
Statistics
Matches: 202, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
85 6 0.03
86 183 0.91
87 13 0.06
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (85 bp):
TCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGGGCTTAACCCCCTAAGCAGTAGGGTAAC
AGGTTGAATTACAGATCTTA
Found at i:108069338 original size:17 final size:17
Alignment explanation
Indices: 108069312--108069345 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
108069302 ATTTATTTAC
108069312 TATGTTCTATT-TTATT
1 TATGTTCTATTATTATT
108069328 TATGCTTCTATTATTATT
1 TATG-TTCTATTATTATT
108069346 ATTGCCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (17 bp):
TATGTTCTATTATTATT
Found at i:108069484 original size:3 final size:3
Alignment explanation
Indices: 108069473--108069518 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
108069463 AAAAAATCTG
*
108069473 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
108069519 AATTGTTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:108069897 original size:3 final size:3
Alignment explanation
Indices: 108069889--108069930 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
108069879 TAACGCCTCT
* * *
108069889 TTA TTA TTA TTA CTA TT- GTA TTA TTA CTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
108069931 ATTTTCCCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:108069912 original size:14 final size:15
Alignment explanation
Indices: 108069893--108069933 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
108069883 GCCTCTTTAT
108069893 TATTATTACTATT-G
1 TATTATTACTATTAG
*
108069907 TATTATTACTATTAT
1 TATTATTACTATTAG
108069922 TATTATTA-TATT
1 TATTATTACTATT
108069934 TTCCCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAG
Found at i:108072140 original size:52 final size:53
Alignment explanation
Indices: 108072038--108072151 Score: 128
Period size: 53 Copynumber: 2.1 Consensus size: 53
108072028 CAGAAAAGAA
*
108072038 AAAAATAAATCATGGAAGAAAATTATAAATTTTAATATAACTTTTTGAA-TTTT
1 AAAAATTAATCATGGAAGAAAATTATAAATTTTAATAT-ACTTTTTGAATTTTT
* *
108072091 AAAAATTAATC-TCGGAAGAAATTTAT-AATTTGTAATAT-TTTTTATGAATTTTT
1 AAAAATTAATCAT-GGAAGAAAATTATAAATTT-TAATATACTTTT-TGAATTTTT
108072144 AAATAATT
1 AAA-AATT
108072152 GTAATAATTT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
51 4 0.08
52 10 0.19
53 35 0.66
54 4 0.08
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.43
Consensus pattern (53 bp):
AAAAATTAATCATGGAAGAAAATTATAAATTTTAATATACTTTTTGAATTTTT
Found at i:108072923 original size:7 final size:6
Alignment explanation
Indices: 108072889--108072913 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
108072879 TATAAAAAAA
108072889 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
108072914 TTATTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:108073145 original size:7 final size:7
Alignment explanation
Indices: 108073129--108073158 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
108073119 AATAGGGCGT
108073129 AAGA-AG
1 AAGAGAG
108073135 AAGAGAG
1 AAGAGAG
108073142 AAGAGAG
1 AAGAGAG
108073149 AAGAGAG
1 AAGAGAG
108073156 AAG
1 AAG
108073159 TGAGCGGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 19 0.83
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (7 bp):
AAGAGAG
Found at i:108077222 original size:52 final size:54
Alignment explanation
Indices: 108077165--108077271 Score: 146
Period size: 56 Copynumber: 2.0 Consensus size: 54
108077155 AACTCCTAAG
* **
108077165 GAACCCTAGGTGTGA-C-AGTATTCTTTCTTCTTGGTTGTTTGATACATGGAAA
1 GAACCCTAGGTGTGACCTAGCATTCTTTCTTCTTGGTTCATTGATACATGGAAA
*
108077217 GAACCCTAGGTGTGACCCTTGGCATTCTTTCTTCTTGGTTCATTGATACATGGAA
1 GAACCCTAGGTGTGA-CC-TAGCATTCTTTCTTCTTGGTTCATTGATACATGGAA
108077272 GAAACCTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
52 15 0.32
54 1 0.02
56 31 0.66
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (54 bp):
GAACCCTAGGTGTGACCTAGCATTCTTTCTTCTTGGTTCATTGATACATGGAAA
Found at i:108086342 original size:20 final size:20
Alignment explanation
Indices: 108086317--108086359 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
108086307 TGAGCTAGGA
108086317 TATCCAGTTAATCAATTTTG
1 TATCCAGTTAATCAATTTTG
108086337 TATCCAGTTAATCAATTTTG
1 TATCCAGTTAATCAATTTTG
108086357 TAT
1 TAT
108086360 TAACCTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (20 bp):
TATCCAGTTAATCAATTTTG
Found at i:108094834 original size:4 final size:4
Alignment explanation
Indices: 108094825--108094853 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
108094815 CAAAAATAAA
108094825 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
108094854 ATAGAAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:108095094 original size:18 final size:18
Alignment explanation
Indices: 108095073--108095108 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
108095063 GTACCAAAAA
108095073 ATATTAATAATTTAAGTT
1 ATATTAATAATTTAAGTT
108095091 ATATTAATAATTTAAGTT
1 ATATTAATAATTTAAGTT
108095109 TAATATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
ATATTAATAATTTAAGTT
Found at i:108099504 original size:51 final size:51
Alignment explanation
Indices: 108099444--108099548 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
108099434 TAGAAGGATT
108099444 AGAAGTGCAACTACACCAAAAGTGAATAGTCACTCAAAGGATGAATTGTAA
1 AGAAGTGCAACTACACCAAAAGTGAATAGTCACTCAAAGGATGAATTGTAA
108099495 AGAAGTGCAACTACACCAAAAGTGAATAGTCACTCAAAGGATGAATTGTAA
1 AGAAGTGCAACTACACCAAAAGTGAATAGTCACTCAAAGGATGAATTGTAA
108099546 AGA
1 AGA
108099549 TTCTAAGGGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (51 bp):
AGAAGTGCAACTACACCAAAAGTGAATAGTCACTCAAAGGATGAATTGTAA
Found at i:108121549 original size:10 final size:10
Alignment explanation
Indices: 108121525--108121558 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
108121515 GAAACAAAAT
*
108121525 AAAAAATTTA
1 AAAAAATTGA
108121535 GAAAAAATTGA
1 -AAAAAATTGA
108121546 AAAAAATTGA
1 AAAAAATTGA
108121556 AAA
1 AAA
108121559 CAGAAGTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (10 bp):
AAAAAATTGA
Found at i:108123679 original size:16 final size:16
Alignment explanation
Indices: 108123658--108123690 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
108123648 ATTCGAATTC
*
108123658 AACGAGAAAATTCGCA
1 AACGAGAAAAGTCGCA
108123674 AACGAGAAAAGTCGCA
1 AACGAGAAAAGTCGCA
108123690 A
1 A
108123691 CCCAGTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.21, T:0.09
Consensus pattern (16 bp):
AACGAGAAAAGTCGCA
Found at i:108124580 original size:19 final size:19
Alignment explanation
Indices: 108124545--108124697 Score: 233
Period size: 19 Copynumber: 8.2 Consensus size: 19
108124535 AGATTACAAG
108124545 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
108124566 ATCATATCTAAGATTACAT
1 ATCATATCTAAGATTGCAT
108124585 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
108124602 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
108124621 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
*
108124640 ATCATATCTAATATTG--T
1 ATCATATCTAAGATTGCAT
108124657 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
108124676 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
108124695 ATC
1 ATC
108124698 CTTAAAGATT
Statistics
Matches: 124, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
17 33 0.27
19 82 0.66
20 1 0.01
21 8 0.06
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:108124609 original size:36 final size:37
Alignment explanation
Indices: 108124534--108124697 Score: 199
Period size: 36 Copynumber: 4.4 Consensus size: 37
108124524 TTAAATCTCC
*
108124534 AAGATTACAAGATCATATCTTCAAGATTGCATATCATATCT
1 AAGATTAC-ATATCATATC-T-AAGATTG-ATATCATATCT
108124575 AAGATTACATATCATATCTAAGATTG-TATCATATCT
1 AAGATTACATATCATATCTAAGATTGATATCATATCT
* *
108124611 AAGATTGCATATCATATCTAATATTGCATATCATATCT
1 AAGATTACATATCATATCTAAGATTG-ATATCATATCT
* *
108124649 AATATT--GTATCATATCTAAGATTGCATATCATATCT
1 AAGATTACATATCATATCTAAGATTG-ATATCATATCT
*
108124685 AAGATTGCATATC
1 AAGATTACATATC
108124698 CTTAAAGATT
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
36 67 0.60
38 26 0.23
39 1 0.01
40 9 0.08
41 8 0.07
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGATATCATATCT
Found at i:108124619 original size:55 final size:55
Alignment explanation
Indices: 108124545--108124697 Score: 261
Period size: 55 Copynumber: 2.7 Consensus size: 55
108124535 AGATTACAAG
*
108124545 ATCATATCTTCAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTGT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
* *
108124602 ATCATATCTAAGATTGCATATCATATCTAATATTGCATATCATATCTAATATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
108124657 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
108124698 CTTAAAGATT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 83 0.90
56 1 0.01
57 8 0.09
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (55 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
Found at i:108125829 original size:79 final size:79
Alignment explanation
Indices: 108125698--108125854 Score: 215
Period size: 79 Copynumber: 2.0 Consensus size: 79
108125688 ATCAGACGTG
* * * * * *
108125698 CCCATATACAGATAAAACATATCAGAACATTCTAGTTGCACATATAATTAATAGATCAAAACATG
1 CCCATATACAAATAAAACAGATCAAAACATACTAATTGCACATATAATTAATAGATCAAAACATA
*
108125763 TTATTGGCATATTA
66 CTATTGGCATATTA
* * *
108125777 CCCATATGCAAATAAAACAGATCAAAACATACTAATTGTACATATAGTTAATAGATCAAAACATA
1 CCCATATACAAATAAAACAGATCAAAACATACTAATTGCACATATAATTAATAGATCAAAACATA
*
108125842 CTATTGGTATATT
66 CTATTGGCATATT
108125855 CGACCATTAC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.30
Consensus pattern (79 bp):
CCCATATACAAATAAAACAGATCAAAACATACTAATTGCACATATAATTAATAGATCAAAACATA
CTATTGGCATATTA
Found at i:108129144 original size:16 final size:16
Alignment explanation
Indices: 108129112--108129144 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
108129102 TAGGGTGTGA
108129112 AATTATTTAATTGAAT
1 AATTATTTAATTGAAT
108129128 AATTAATTTAATT-AAT
1 AATT-ATTTAATTGAAT
108129144 A
1 A
108129145 TTCAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AATTATTTAATTGAAT
Found at i:108130982 original size:36 final size:36
Alignment explanation
Indices: 108130935--108131007 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
108130925 AAAGGTTGTC
108130935 ACTATAGGGACATCCAAATTTAGAACGAGGATAACT
1 ACTATAGGGACATCCAAATTTAGAACGAGGATAACT
108130971 ACTATAGGGACATCCAAATTTAGAACGAGGATAACT
1 ACTATAGGGACATCCAAATTTAGAACGAGGATAACT
108131007 A
1 A
108131008 ACTCTAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.22
Consensus pattern (36 bp):
ACTATAGGGACATCCAAATTTAGAACGAGGATAACT
Found at i:108143805 original size:75 final size:74
Alignment explanation
Indices: 108143718--108143888 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
108143708 GTTTTCCTCA
** * * **
108143718 TTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
108143782 CAGTATGGAT
65 CAGTATGGAT
* *
108143792 TTGATAATACCATACCTATATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
108143857 CAGTATGGA-
65 CAGTATGGAT
*
108143866 -TG--ATACCATAACTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
108143889 CTTTTCCATG
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 19 0.22
73 2 0.02
74 7 0.08
75 57 0.67
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:108143886 original size:35 final size:35
Alignment explanation
Indices: 108143722--108143888 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
108143712 TCCTCATTGA
** *
108143722 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
108143757 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
* *
108143797 AATACCATACCTATATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
108143832 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* *
108143867 GATACCATAACTACATTTCACA
1 AATACCATACCTACATTTCACA
108143889 CTTTTCCATG
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
35 85 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:108145518 original size:32 final size:33
Alignment explanation
Indices: 108145481--108145550 Score: 99
Period size: 32 Copynumber: 2.1 Consensus size: 33
108145471 TATCTATTCT
*
108145481 AAAAAGAAAAGAGAAAACCC-AATCTAAAA-ATG
1 AAAAAGAAAAGA-AAAACCCTAACCTAAAATATG
108145513 AAAAAGAAAAGAAAAACCCTAACCTAAAATTATG
1 AAAAAGAAAAGAAAAACCCTAACCTAAAA-TATG
108145547 AAAA
1 AAAA
108145551 CTTAAGGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 7 0.21
32 20 0.59
34 7 0.21
ACGTcount: A:0.66, C:0.13, G:0.10, T:0.11
Consensus pattern (33 bp):
AAAAAGAAAAGAAAAACCCTAACCTAAAATATG
Found at i:108148896 original size:46 final size:46
Alignment explanation
Indices: 108148831--108149016 Score: 223
Period size: 46 Copynumber: 4.0 Consensus size: 46
108148821 TTATCTTTGA
* * * ** * *
108148831 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
***
108148877 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
108148923 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
108148969 CAGGCTGCCAT-GTAATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGT-ATCTTTCAACCATGGTCTTACACATTTCATAT
108149015 CA
1 CA
108149017 AAGAGCACAC
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 6 0.05
46 118 0.95
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:108150054 original size:39 final size:41
Alignment explanation
Indices: 108149999--108150084 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 41
108149989 TCAAATACAT
108149999 TTAAAACAAATATTAAAACAAGAAACAAA-T-AAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
* * * *
108150038 TTAAAACAATTCTTAAAACAATACACAAATTAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
*
108150079 ATAAAA
1 TTAAAA
108150085 ATTGATTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 25 0.62
40 1 0.03
41 14 0.35
ACGTcount: A:0.66, C:0.09, G:0.01, T:0.23
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
Found at i:108150128 original size:23 final size:23
Alignment explanation
Indices: 108150100--108150144 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
108150090 TTATACTAAA
* *
108150100 ATTAAAATTAAAATATAAATATG
1 ATTAAAAATAAAAAATAAATATG
*
108150123 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAAAATAAATAT
108150145 TTATTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATG
Found at i:108172959 original size:466 final size:466
Alignment explanation
Indices: 108172088--108173483 Score: 2675
Period size: 466 Copynumber: 3.0 Consensus size: 466
108172078 TAGTTTCTTG
108172088 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
1 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
108172153 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
66 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
*
108172218 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCTTAATTCTTTCAATTAT
131 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
*
108172283 GGTTGTTTTCTTCCCTAAACCATATCAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
196 GGTTGTTTTCTTCTCTAAACCATATCAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
* *
108172348 ATTAAGCCATGGTTGGACATAGTGGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
261 ATTAAGCCATGGTTGGACATGGTAGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
108172413 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAGGC
326 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAGGC
108172478 AGTGGGAGTCCAGATGGAATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGGG
391 AGTGGGAGTCCAGATGGAATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGGG
108172543 TGGAATTATAT
456 TGGAATTATAT
108172554 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
1 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
108172619 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
66 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
108172684 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
131 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
*
108172749 GGTTGTTTTCTTCTCTAAACCATATCAATTTTGGCATTAGAGCTTAATTAGATCCTACGGTTGCT
196 GGTTGTTTTCTTCTCTAAACCATATCAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
*
108172814 ATTAAGCCATGGTTGGACATGGTAGATATTAAGAAAGCGGAAGTCAAGGTCAAGAGACAATATTG
261 ATTAAGCCATGGTTGGACATGGTAGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
*
108172879 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCGTGCAATTTATGCTACATTGCGACAAGAGGC
326 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAGGC
108172944 AGTGGGAGTCCAGATGGAATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGGG
391 AGTGGGAGTCCAGATGGAATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGGG
108173009 TGGAATTATAT
456 TGGAATTATAT
108173020 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
1 AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
108173085 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
66 ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
108173150 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
131 CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
*
108173215 GGTTGTTTTCTTCTCTAAACCATAACAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
196 GGTTGTTTTCTTCTCTAAACCATATCAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
108173280 ATTAAGCCATGGTTGGACATGGTAGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
261 ATTAAGCCATGGTTGGACATGGTAGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
**
108173345 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAACC
326 ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAGGC
* *
108173410 AGTGGGAGTCCAGATGGAGATTCTGGAAGGTGCCCACAATTGTGTAAGCCTTTGAATTAAATAGG
391 AGTGGGAGTCCAGATGGA-ATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGG
108173475 GTGGAATTA
455 GTGGAATTA
108173484 AGATCAAAGT
Statistics
Matches: 914, Mismatches: 15, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
466 861 0.94
467 53 0.06
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (466 bp):
AGGGTTAAGTTGAGGGTTAATAATAAAATTTTATTTGCAAAAGTCCATTTTATATATGTTGTAAC
ATATTTACAACTTTTCTGATTATTATCTTTGAATTAATAAAGAGGCCTGGAGACTTTCTATAACT
CTTAAGTTTTCTAGAGTTTCAAATTCTTTTCTTATTCGTTTTACAGCCATAATTCTTTCAATTAT
GGTTGTTTTCTTCTCTAAACCATATCAATTTTGGCATTAGAACTTAATTAGATCCTACGGTTGCT
ATTAAGCCATGGTTGGACATGGTAGATATTAAGGAAGCGGAAGTCAAGGTCAAGAGACAATATTG
ACTGCAATACGAAGTGATATTAAAGAATTGTCGCATGCAATTTATGCTACATTGCGACAAGAGGC
AGTGGGAGTCCAGATGGAATTCTGGAAGGTGCCCACAATTGTGTATGCCTTAGAATTAAATAGGG
TGGAATTATAT
Found at i:108178998 original size:38 final size:38
Alignment explanation
Indices: 108178942--108179017 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
108178932 CAATAAGAGA
108178942 GTGTCGTGACCATAAAGGCAGTTTTCCCCAAATTTTAC
1 GTGTCGTGACCATAAAGGCAGTTTTCCCCAAATTTTAC
* *
108178980 GTGTCGTGACCATGAAGGCAGTTTTTCCCAAATTTTAC
1 GTGTCGTGACCATAAAGGCAGTTTTCCCCAAATTTTAC
108179018 TTCATTCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (38 bp):
GTGTCGTGACCATAAAGGCAGTTTTCCCCAAATTTTAC
Found at i:108180292 original size:33 final size:31
Alignment explanation
Indices: 108180267--108180325 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
108180257 ATATCATCAT
* *
108180267 ATACAAA-AATGAGAGTACAAACCATATTGA
1 ATACAAATAATGAAAGTACAAACCATATTCA
*
108180297 ATTCAAATAATGAAAGTACAAACCATATT
1 ATACAAATAATGAAAGTACAAACCATATT
108180326 AGCCACTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.24
Consensus pattern (31 bp):
ATACAAATAATGAAAGTACAAACCATATTCA
Found at i:108183458 original size:43 final size:43
Alignment explanation
Indices: 108183397--108183497 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
108183387 GCAGATTTTT
*
108183397 CACAGCTCATGTAAGCAGCATCGTGTAGCCTAACATCTTAACC
1 CACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCTTAACC
108183440 CACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCTTAACC
1 CACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCTTAACC
*
108183483 CACAGCTTATGTGAG
1 CACAGCTCATGTGAG
108183498 TAGGCATATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
CACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCTTAACC
Found at i:108185390 original size:13 final size:13
Alignment explanation
Indices: 108185372--108185396 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108185362 TGGTGCCCAA
108185372 AAGCAATGTTGGC
1 AAGCAATGTTGGC
108185385 AAGCAATGTTGG
1 AAGCAATGTTGG
108185397 AAGATTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (13 bp):
AAGCAATGTTGGC
Found at i:108190091 original size:90 final size:91
Alignment explanation
Indices: 108189934--108190116 Score: 287
Period size: 90 Copynumber: 2.0 Consensus size: 91
108189924 TTACCTACCT
108189934 TTTTCTTGCTTCTTACAGTTAGTTAGTACAAGGAGATTGTAATCCTGAGAGGACGGCTGCTTTTG
1 TTTTCTTGCTTCTTAC---TAGTTAGTACAAGGAGATTGTAATCCTGAGAGGACGGCTGCTTTTG
*
108189999 GCATTATCTAAACTATTATGCGAAATAAG
63 GCATTACCTAAACTATTATGCGAAATAAG
* *
108190028 TTTTCTTGCTTCTTAC-AGTTAGTACAAGGAGATTGTAATCCTGCGAGGATGGCTGCTTTTGGCA
1 TTTTCTTGCTTCTTACTAGTTAGTACAAGGAGATTGTAATCCTGAGAGGACGGCTGCTTTTGGCA
* *
108190092 TTACCTAAATTATTATGCTAAATAA
66 TTACCTAAACTATTATGCGAAATAA
108190117 AATTTTGTAA
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
90 68 0.81
94 16 0.19
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37
Consensus pattern (91 bp):
TTTTCTTGCTTCTTACTAGTTAGTACAAGGAGATTGTAATCCTGAGAGGACGGCTGCTTTTGGCA
TTACCTAAACTATTATGCGAAATAAG
Found at i:108192164 original size:59 final size:59
Alignment explanation
Indices: 108192092--108192209 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
108192082 GAAAGGAGTA
108192092 AGAATGGAAAATTTGCTAATCAAATGGTTAAGATTCATAATTACTTTCTTACTTTATAG
1 AGAATGGAAAATTTGCTAATCAAATGGTTAAGATTCATAATTACTTTCTTACTTTATAG
108192151 AGAATGGAAAATTTGCTAATCAAATGGTTAAGATTCATAATTACTTTCTTACTTTATAG
1 AGAATGGAAAATTTGCTAATCAAATGGTTAAGATTCATAATTACTTTCTTACTTTATAG
108192210 TTTAACCATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (59 bp):
AGAATGGAAAATTTGCTAATCAAATGGTTAAGATTCATAATTACTTTCTTACTTTATAG
Found at i:108198808 original size:59 final size:60
Alignment explanation
Indices: 108198678--108198810 Score: 180
Period size: 59 Copynumber: 2.2 Consensus size: 60
108198668 TCGGAGATTA
* *
108198678 ACTTCAGCATTAAAACGAGTTTCAAAAGTCAAATTTTCAATAGATTCTAATATTTCATTC
1 ACTTAAGCATTAAAACGAGTTCCAAAAGTCAAATTTTCAATAGATTCTAATATTTCATTC
* * * * *
108198738 ACTTCAA-CATTAAAACGAGTTCCGAAGGTCAAA-TTTCGATAGATTCTAATGTTTCATTT
1 ACTT-AAGCATTAAAACGAGTTCCAAAAGTCAAATTTTCAATAGATTCTAATATTTCATTC
108198797 ACTTAAGCATTAAA
1 ACTTAAGCATTAAA
108198811 GCATTCTGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 2 0.03
59 34 0.53
60 27 0.42
61 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (60 bp):
ACTTAAGCATTAAAACGAGTTCCAAAAGTCAAATTTTCAATAGATTCTAATATTTCATTC
Found at i:108199604 original size:23 final size:23
Alignment explanation
Indices: 108199578--108199623 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
108199568 GTTGAACATC
108199578 ACTTGCGTCATCTCTTGTATGGT
1 ACTTGCGTCATCTCTTGTATGGT
108199601 ACTTGCGTCATCTCTTGTATGGT
1 ACTTGCGTCATCTCTTGTATGGT
108199624 GTGATTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (23 bp):
ACTTGCGTCATCTCTTGTATGGT
Found at i:108199891 original size:2 final size:2
Alignment explanation
Indices: 108199884--108199910 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
108199874 AAGTCATCTG
108199884 CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA C
108199911 CCCGAGACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:108204779 original size:15 final size:15
Alignment explanation
Indices: 108204755--108204802 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
108204745 TTATTTTAAT
*
108204755 ATATTGTAATAAAAA
1 ATATTTTAATAAAAA
* *
108204770 ATATTTTAAT--TAT
1 ATATTTTAATAAAAA
108204783 ATATTTTAATAAAAA
1 ATATTTTAATAAAAA
108204798 ATATT
1 ATATT
108204803 GAATTAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
13 11 0.42
15 15 0.58
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATATTTTAATAAAAA
Found at i:108206184 original size:18 final size:19
Alignment explanation
Indices: 108206163--108206222 Score: 79
Period size: 18 Copynumber: 3.2 Consensus size: 19
108206153 AAATTCAAAA
108206163 AAATATAAAAATATA-TTT
1 AAATATAAAAATATATTTT
*
108206181 AAATATGAAAAT-TATTTT
1 AAATATAAAAATATATTTT
108206199 AAATATATAAAATATAATTTT
1 AAATATA-AAAATAT-ATTTT
108206220 AAA
1 AAA
108206223 AATATTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
17 2 0.06
18 20 0.56
19 5 0.14
20 1 0.03
21 8 0.22
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
AAATATAAAAATATATTTT
Done.