Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 371 of 378
Found at i:110904992 original size:5 final size:5
Alignment explanation
Indices: 110904982--110905026 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
110904972 TCTTTTTCTA
110904982 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA- TTTA- TTTAT TATTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT T
110905027 AATTTTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.21
5 25 0.66
6 5 0.13
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:110905093 original size:24 final size:22
Alignment explanation
Indices: 110905028--110905094 Score: 64
Period size: 26 Copynumber: 2.9 Consensus size: 22
110905018 ATTATTATTA
*
110905028 ATTTTAAAA-ATTTTGAAATAT
1 ATTTTAAAATATTTTTAAATAT
*
110905049 ATATTTGAAATATTTAATTAATATAT
1 AT-TTTAAAATATTT--TTAA-ATAT
110905075 ATTTTAAAATTATTTTTAAA
1 ATTTTAAAA-TATTTTTAAA
110905095 ATTTTAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
21 2 0.05
22 6 0.16
23 5 0.14
24 4 0.11
25 9 0.24
26 11 0.30
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (22 bp):
ATTTTAAAATATTTTTAAATAT
Found at i:110905122 original size:22 final size:21
Alignment explanation
Indices: 110905075--110905128 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
110905065 ATTAATATAT
110905075 ATTTTAAA-ATTATTTTTAAA
1 ATTTTAAATATTATTTTTAAA
**
110905095 ATTTTAAATATTATTTTTTTA
1 ATTTTAAATATTATTTTTAAA
110905116 ATATTTAAATATT
1 AT-TTTAAATATT
110905129 TTAAACTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 8 0.27
21 12 0.40
22 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTAAATATTATTTTTAAA
Found at i:110905558 original size:20 final size:20
Alignment explanation
Indices: 110905526--110905563 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
110905516 TGTTTCACAT
110905526 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
110905546 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
110905564 ACTTAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:110916072 original size:18 final size:19
Alignment explanation
Indices: 110916049--110916091 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
110916039 TTTTTATAAT
110916049 TCTTTTTGA-ATTTTAAAA
1 TCTTTTTGATATTTTAAAA
* *
110916067 TCTTTTTTATTTTTTAAAA
1 TCTTTTTGATATTTTAAAA
110916086 T-TTTTT
1 TCTTTTT
110916092 ATAATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (19 bp):
TCTTTTTGATATTTTAAAA
Found at i:110916073 original size:19 final size:18
Alignment explanation
Indices: 110916040--110916091 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
110916030 TTTATATACT
*
110916040 TTTTATAATTCTTTTTGA-A
1 TTTTAAAATT-TTTTT-ATA
*
110916059 TTTTAAAATCTTTTTTATT
1 TTTTAAAAT-TTTTTTATA
110916078 TTTTAAAATTTTTT
1 TTTTAAAATTTTTT
110916092 ATAATTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 6 0.21
19 22 0.76
20 1 0.03
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAAAATTTTTTTATA
Found at i:110916089 original size:17 final size:18
Alignment explanation
Indices: 110916059--110916093 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
110916049 TCTTTTTGAA
110916059 TTTTAAAATCTTTTTTATT
1 TTTTAAAA-CTTTTTTATT
110916078 TTTTAAAA-TTTTTTAT
1 TTTTAAAACTTTTTTAT
110916094 AATTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTAAAACTTTTTTATT
Found at i:110919516 original size:210 final size:210
Alignment explanation
Indices: 110919154--110920356 Score: 1492
Period size: 210 Copynumber: 5.7 Consensus size: 210
110919144 ACAATGCTCT
* *** * * * * *
110919154 TCTCTTGAAAAGCTTAGCATTTCATTTTGTGAAAAATTAAGTAAGATTGGAAACGGATTATCTAC
1 TCTCTTGAAAAGCTTAGAATTTCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAAC
* * * * *
110919219 CTCCACTTGTCTCAAAGAATTAGACCTACATGCTTGTCCTAATTTAAGTTCAATTCCAAATTTAG
66 CTCCACTTGTCTCAAAGAATTAGATCTATATGATTGTCCTAATTTAAGTTCCATTCCAAATTTGG
* **
110919284 AAGGATTTTCCTCTCTTCAAAATTTGTCAATTGAGAACTGCAAGAAATTGGGAGTTCTTCCGATA
131 AAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGAAATTGGGAGTTCTTCCGATA
*
110919349 ATCGGAGGATGTTCA
196 ACCGGAGGATGTTCA
* * * *
110919364 TCTCTTGAAAAGCTTAGAATATCCGGTTGCGAAAAATTAAGCAAGATCGGAGACGGGCTGTCAAC
1 TCTCTTGAAAAGCTTAGAATTTCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAAC
* *
110919429 CTCCACTTGTCTCAAAGAATTAGGTCTATTTGATTGTCCTAATTTAAGTTCCATTCCAAATTTGG
66 CTCCACTTGTCTCAAAGAATTAGATCTATATGATTGTCCTAATTTAAGTTCCATTCCAAATTTGG
* * * *
110919494 AAGGATTTTCGTCTCTTCAAAATCTGTCAATTTACAGGTGCAAGGAATTGGGAGTTCTTCCGATA
131 AAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGAAATTGGGAGTTCTTCCGATA
* *
110919559 ATCGGAGGATGTTCG
196 ACCGGAGGATGTTCA
* * * *
110919574 TCTCTTGAAAAGCTTAGGATTTCCGGTTGCGAAAAATTAAGCAAGATTGGATACGGGCTGTCAAC
1 TCTCTTGAAAAGCTTAGAATTTCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAAC
* * ** *
110919639 CTCCACTTGTCTCAAAGAATTCGGTCTATCGGATTGTCCTAATGTAAGTTCCATTCCAAATTTGG
66 CTCCACTTGTCTCAAAGAATTAGATCTATATGATTGTCCTAATTTAAGTTCCATTCCAAATTTGG
* * * * *
110919704 AAGGCTTTTCCTCTCTTCAATATCTGTCAATTGAGAGCTGCAAAAAATTGGGAGTTCTTCCAATA
131 AAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGAAATTGGGAGTTCTTCCGATA
110919769 ACCGGAGGATGTTCA
196 ACCGGAGGATGTTCA
* * * * *
110919784 TCTCTTCAAAAGCTTA-AGATTTCTGGTTGCGAAAAATTAAGCAAGATTGGAGATGGATTATCTA
1 TCTCTTGAAAAGCTTAGA-ATTTCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAA
* *
110919848 CCTCCACTTGTCTCAGAA-AATTAGATCTAAAAT-ATTGTCCTAATTTAAGTTCCATTCCGAATT
65 CCTCCACTTGTCTCA-AAGAATTAGATCT-ATATGATTGTCCTAATTTAAGTTCCATTCCAAATT
* * *
110919911 TGGAAAGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGACATTGGAAGTTCTTCCG
128 TGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGAAATTGGGAGTTCTTCCG
* *
110919976 ATAACGGGAGAATGTTCA
193 ATAACCGGAGGATGTTCA
* * * * * *
110919994 TCTCTTGAAGAGCTTAGCATTAT-CGTTTGCGAAAAACTAAGCAAGATTGGAGACGGGCTGTCAA
1 TCTCTTGAAAAGCTTAGAATT-TCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAA
* * * * * *
110920058 CCTCCACTTGTCTCAAAAAATTACGA-CTATGT-AGTTGTCCTAACTTAATTTCAATTCCGGAA-
65 CCTCCACTTGTCTCAAAGAATTA-GATCTATATGA-TTGTCCTAATTTAAGTTCCATTCC-AAAT
* * *
110920120 TTGGAAGGATTTTCTTCTCTTCAAAATCTGTCAATT-AGATGGTGC-AGCGAATTGGAAGTTCTT
127 TTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGA-GGTGCAAG-AAATTGGGAGTTCTT
110920183 CCGATAACCGGAGGATGTTCA
190 CCGATAACCGGAGGATGTTCA
* * * * * * *
110920204 TCTCTTGAAAAACTTAGCATTTTCGATTGC-AAAAAGTTAAGTAAGATTGGAGACGGATTATCTA
1 TCTCTTGAAAAGCTTAGAATTTCCGGTTGCGAAAAA-TTAAGCAAGATTGGAGACGGACTATCAA
* * *
110920268 CCTCCACTTGTCTTAAAGAATTAGATCTAAAATG-TTGTCCTAATTTAAGTTCGATTCCAAATTT
65 CCTCCACTTGTCTCAAAGAATTAGATCT-ATATGATTGTCCTAATTTAAGTTCCATTCCAAATTT
*
110920332 GGAAGGATTTTCGTCTCTTCAAAAT
129 GGAAGGATTTTCCTCTCTTCAAAAT
110920357 GTATCCGTTG
Statistics
Matches: 863, Mismatches: 113, Indels: 34
0.85 0.11 0.03
Matches are distributed among these distances:
209 20 0.02
210 832 0.96
211 11 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (210 bp):
TCTCTTGAAAAGCTTAGAATTTCCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGACTATCAAC
CTCCACTTGTCTCAAAGAATTAGATCTATATGATTGTCCTAATTTAAGTTCCATTCCAAATTTGG
AAGGATTTTCCTCTCTTCAAAATCTGTCAATTGAGAGGTGCAAGAAATTGGGAGTTCTTCCGATA
ACCGGAGGATGTTCA
Found at i:110921003 original size:144 final size:145
Alignment explanation
Indices: 110920752--110921160 Score: 484
Period size: 144 Copynumber: 2.8 Consensus size: 145
110920742 TTGGTTGGGA
* * * *
110920752 AAAGCTTAAGAGTCTCCCTCACCAATTTCAACTCCTAACCACCCTTGAAGATTTGACGATTGAAA
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCTAACTACCCTTGAAGATTTGACGATTGAAA
** * * * *
110920817 GGTTTGGTGGAATAGAAGCCTTGCCAGACTGGTTGGGAAATCTCTCTTCTCTACGGCGTCTATAT
66 GGTTTCATGAAATAGAAGCCTTGCCAGAATGGTTGGGAAATCTCTCTTCTCTAAGGCATCTATAT
110920882 TTGAGTGGTTTT-GG
131 TTGAGTGGTTTTCGG
* * * * *
110920896 AAAGCTAAAGAGTCTTCCTCACCAGCTTCAACTCCTCACTGCCCTTGAAGATTTGACTA-TGCAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCTAACTACCCTTGAAGATTTGACGATTG-AA
*
110920960 GGGTTTCATGAAATAGAAGCCTTGCCAGAATGGTTGGGAAATCTCTCTTCTCTAAGGCATCTATA
65 AGGTTTCATGAAATAGAAGCCTTGCCAGAATGGTTGGGAAATCTCTCTTCTCTAAGGCATCTATA
110921025 TTTGAGTGGTTTTCGG
130 TTTGAGTGGTTTTCGG
* * ** * * *
110921041 -AAGCTAAAGAGTTTTACTCACCAACTTCAACTCCTTTCTACCCTTGAATATTTAACGATAG-AA
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCTAACTACCCTTGAAGATTTGACGATTGAAA
* * * * * ** **
110921104 GAGTTTCAAGGAATAGGAGCCTTGCCACAGTCATTCAGAAATCTCTCTTCTCTAAGG
66 G-GTTTCATGAAATAGAAGCCTTGCCAGAATGGTTGGGAAATCTCTCTTCTCTAAGG
110921161 AGGCTGTGTA
Statistics
Matches: 224, Mismatches: 37, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
143 3 0.01
144 218 0.97
145 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (145 bp):
AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCTAACTACCCTTGAAGATTTGACGATTGAAA
GGTTTCATGAAATAGAAGCCTTGCCAGAATGGTTGGGAAATCTCTCTTCTCTAAGGCATCTATAT
TTGAGTGGTTTTCGG
Found at i:110922283 original size:53 final size:53
Alignment explanation
Indices: 110922201--110922301 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
110922191 TGATTTTGTC
* * **
110922201 CTTTTTACTTTTTTTTTATTTTTTATTTTTAAGTTTTGTCTTTTTCTTTTATT
1 CTTTTTACTTTTTTTTAATTTTTTATTTTTAACTTTTAACTTTTTCTTTTATT
*
110922254 CTTTTT-C-TTTTTTTAAGTTTTCTTTTTTTTAACTTTTAACTTTTTCTT
1 CTTTTTACTTTTTTTTAA-TTTT-TTATTTTTAACTTTTAACTTTTTCTT
110922302 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 8 0.20
52 5 0.12
53 28 0.68
ACGTcount: A:0.12, C:0.10, G:0.03, T:0.75
Consensus pattern (53 bp):
CTTTTTACTTTTTTTTAATTTTTTATTTTTAACTTTTAACTTTTTCTTTTATT
Found at i:110922297 original size:17 final size:16
Alignment explanation
Indices: 110922260--110922309 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 16
110922250 TATTCTTTTT
110922260 CTTTTTTTAAGTTTT--
1 CTTTTTTTAA-TTTTAA
110922275 CTTTTTTTTAACTTTTAA
1 C-TTTTTTTAA-TTTTAA
110922293 CTTTTTCTTAATTTTAA
1 CTTTTT-TTAATTTTAA
110922310 AAAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 1 0.03
16 13 0.43
17 11 0.37
18 5 0.17
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (16 bp):
CTTTTTTTAATTTTAA
Found at i:110922520 original size:22 final size:20
Alignment explanation
Indices: 110922482--110922525 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
110922472 TCTTATATTA
*
110922482 TTAAAAAATTATATTTAACAT
1 TTAAAAAATAATATTTAA-AT
110922503 TTAAAAAATAATATTTTAAAT
1 TTAAAAAATAATA-TTTAAAT
110922524 TT
1 TT
110922526 TAAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAAATAATATTTAAAT
Found at i:110922521 original size:53 final size:52
Alignment explanation
Indices: 110922460--110922563 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 52
110922450 CATATCTTTA
* *
110922460 AATATTTAAATGTCTTATATTATTAAAAAAT-TATATTTAACA-TTTAAAAAAT
1 AATATTTAAAT-T-TTAAATTATTAAAAAATATATATTTAAAACTTTAAAAAAT
* **
110922512 AATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTTTAAAAAA
1 AATA-TTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTTAAAAAA
110922564 AGGATTAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
51 13 0.30
52 15 0.34
53 16 0.36
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (52 bp):
AATATTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTTAAAAAAT
Found at i:110922814 original size:27 final size:25
Alignment explanation
Indices: 110922761--110922823 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
110922751 ATGTTTTGTA
*
110922761 TTAATAAA-AATATATATTTAATAT
1 TTAATAAATAATATAAATTTAATAT
110922785 TTAATAAATAATATTAAACTTTAA-ACT
1 TTAATAAATAATA-TAAA-TTTAATA-T
*
110922812 TTAAAAAATAAT
1 TTAATAAATAAT
110922824 TTCAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 8 0.24
25 4 0.12
26 4 0.12
27 17 0.52
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
TTAATAAATAATATAAATTTAATAT
Found at i:110922974 original size:61 final size:62
Alignment explanation
Indices: 110922850--110922990 Score: 178
Period size: 62 Copynumber: 2.3 Consensus size: 62
110922840 TAAAATTAAG
* * * *
110922850 AATAAAAAATAAATAAAATAAATAAAGATAAAGACAACATTTAAATTTTAAATTTTAAAATT
1 AATAATAAATAAATAAAATAAATAAAGATAAAGACAAAATATAAATTTAAAATTTTAAAATT
** * *
110922912 AATAATAAATAAAT-AAATAAAATATGGATAAATACAAAATATATATTTAAAATTTT-AAATT
1 AATAATAAATAAATAAAAT-AAATAAAGATAAAGACAAAATATAAATTTAAAATTTTAAAATT
110922973 AATAATAAATAAAATAAA
1 AATAATAAAT-AAATAAA
110922991 CAAATTTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
61 19 0.28
62 47 0.69
63 2 0.03
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (62 bp):
AATAATAAATAAATAAAATAAATAAAGATAAAGACAAAATATAAATTTAAAATTTTAAAATT
Found at i:110923041 original size:17 final size:17
Alignment explanation
Indices: 110923019--110923064 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
110923009 TTAAAGTTTT
110923019 TTAAAA-TTAAGAAAAAG
1 TTAAAAGTTAA-AAAAAG
110923036 TTAAAAGTTAAAAAAA-
1 TTAAAAGTTAAAAAAAG
* *
110923052 ATAAAACTTAAAA
1 TTAAAAGTTAAAA
110923065 TAAGAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 11 0.42
17 11 0.42
18 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (17 bp):
TTAAAAGTTAAAAAAAG
Found at i:110924333 original size:22 final size:23
Alignment explanation
Indices: 110924307--110924350 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
110924297 GATTAATGAT
110924307 ATAATATATT-ATTAA-ATTTATC
1 ATAAT-TATTAATTAATATTTATC
110924329 ATAATTATTAATTAATATTTAT
1 ATAATTATTAATTAATATTTAT
110924351 ATGAGTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 10 0.50
23 6 0.30
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATAATTATTAATTAATATTTATC
Found at i:110931987 original size:210 final size:210
Alignment explanation
Indices: 110931597--110932194 Score: 803
Period size: 210 Copynumber: 2.8 Consensus size: 210
110931587 TTGAAAAATG
* * * * **
110931597 TTCCACTAACGGGACAATGTT-ATTCTCTTGAAAAGCTTCGCATTTCATCATGTGAAAGTTTAAG
1 TTCCAATAACCGGACGATGTTCA-TCTCTTGAAAAGCTTAGCATTTCATCATGTGAAAAATTAAG
* * * * *
110931661 CAAGATCGGAGACGGACTATCTACCTCCACTTGTCTCAAAGAATTATATCTATATGAGTGT-TTT
65 CAAGATCGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTATAAGATTGTCCTT
* * *
110931725 AATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAATTCTAA-GTT
130 -ATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATT-AAATGGT
*
110931789 GCTACGAATTGGAAGTAC
193 GCAACGAATTGGAAGTAC
**** *
110931807 TTCCAATAACCGGACGATGTTCATCTCTTGAAAAGCTTAGCATTTCCGGTTGCGAAAAATTAAGC
1 TTCCAATAACCGGACGATGTTCATCTCTTGAAAAGCTTAGCATTTCATCATGTGAAAAATTAAGC
* * *
110931872 AAGATTGGAGATGGATTATCAACCTCCACTTGTCTCAAAGAATTAGATCT-TGAAGATTGTCCTT
66 AAGATCGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAT-AAGATTGTCCTT
* *
110931936 ATTTAAGTTCGATTCCTAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTAAATGGTGC
130 ATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTAAATGGTGC
110932001 AACGAATTGGAAGTAC
195 AACGAATTGGAAGTAC
* * * * *
110932017 TTCCAATAACCGGAGGATGTTCTTTTCTTGAAAATCTTAGCATTTCATCATGTGAAAAGTTAAGC
1 TTCCAATAACCGGACGATGTTCATCTCTTGAAAAGCTTAGCATTTCATCATGTGAAAAATTAAGC
*
110932082 AAGATCGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATT-GTGTCTA-AAGAATTGTCCT
66 AAGATCGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATTAG-ATCTATAAG-ATTGTCCT
* *
110932145 AATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCATCTCTTCAAAATCT
129 TATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCT
110932195 ATCAGTTGAT
Statistics
Matches: 338, Mismatches: 43, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
209 7 0.02
210 328 0.97
211 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (210 bp):
TTCCAATAACCGGACGATGTTCATCTCTTGAAAAGCTTAGCATTTCATCATGTGAAAAATTAAGC
AAGATCGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTATAAGATTGTCCTTA
TTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTAAATGGTGCA
ACGAATTGGAAGTAC
Found at i:110932137 original size:14 final size:15
Alignment explanation
Indices: 110932112--110932141 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
110932102 TACCTCCACT
110932112 TGTCTCAAAGAATTG
1 TGTCTCAAAGAATTG
110932127 TGTCT-AAAGAATTG
1 TGTCTCAAAGAATTG
110932141 T
1 T
110932142 CCTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (15 bp):
TGTCTCAAAGAATTG
Found at i:110932845 original size:144 final size:144
Alignment explanation
Indices: 110932588--110932850 Score: 332
Period size: 144 Copynumber: 1.8 Consensus size: 144
110932578 TTGGTTGGGA
** ** * *
110932588 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCTCTCGAAGAATTGACGATGGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCCCACTGCCCTCGAAGAATTGACAATGGAAG
* * * * ** * *
110932653 GGTTTCAAGGAATAGAAGCCTTTCCAGAGTGGTTGGGAAAACTTTCTTCTCTAAAGCGTCTAAGT
66 GGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTGCAAAAACTCTCTTCCCTAAAGCGTCTAAGT
110932718 TTGAGTGGTTTTGG
131 TTGAGTGGTTTTGG
* * *
110932732 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCCCACTGCCCTTGAAGAGTTGACAATGTG-C
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCCCACTGCCCTCGAAGAATTGACAATG-GAA
*
110932796 GGGTTTCATGAAATAGAAGCCTTGCCAGACTCGTT-CAAAAATCTCTCTTCCCTAA
65 GGGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTGCAAAAA-CTCTCTTCCCTAA
110932851 GGTGTCTGCG
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 4 0.04
144 94 0.95
145 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (144 bp):
AAAGCTAAAGAGTCTTCCTCACCAACTTCAACTCCCCACTGCCCTCGAAGAATTGACAATGGAAG
GGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTGCAAAAACTCTCTTCCCTAAAGCGTCTAAGT
TTGAGTGGTTTTGG
Found at i:110939147 original size:210 final size:209
Alignment explanation
Indices: 110938780--110939591 Score: 1313
Period size: 210 Copynumber: 3.9 Consensus size: 209
110938770 ACAATGTTAT
* *
110938780 TCTCTTGAAAAGCTTAGCATTTTCC-GTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTA
1 TCTCTTGAAAAGCTTCGCA-TTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTA
110938844 CCTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTG
65 CCTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTG
* * * *
110938909 GAAGGACTTTCCTCTCTTCAATATCTGTCAGTTCGAGTGTGCTACAAATTTGAAGTTCTTCCTAT
130 GAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAGT-TGCAACAAATTGGAAGTTCTTCCAAT
* *
110938974 AACCGGAGGGTGTTCA
194 AACTGGAGGATGTTCA
110938990 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
** *
110939055 CTCCACTTGTCTCAAAGAATTAGATTTAGACGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
* * *
110939120 AAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCTACGTTGCAACAAATTGGAAGTTCTTACAATA
131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGA-GTTGCAACAAATTGGAAGTTCTTCCAATA
110939185 ACTGGAGGATGTTCA
195 ACTGGAGGATGTTCA
* * *
110939200 TCTCTTGTAATGCTTCTCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
* *
110939265 CTCCACTTGTCTCAAAGAATTAGATCTAAAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
* *
110939330 AAGGATTTTCCTCTCTTCAATTTCTGTCTGTT-GAAAGTTGCAACAAATTGGAAGTTCTTCCAAT
131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCG--AGTTGCAACAAATTGGAAGTTCTTCCAAT
110939394 AACTGGAGGATGTTCA
194 AACTGGAGGATGTTCA
** *
110939410 TCTCTTGAAGGGCTTCGCATTTCCAGTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
1 TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
110939475 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
66 CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
* * *
110939540 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAATGTTGCGACAAGTTGGA
131 AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGA-GTTGCAACAAATTGGA
110939592 GAGCTTTCCA
Statistics
Matches: 559, Mismatches: 37, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
209 6 0.01
210 550 0.98
211 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (209 bp):
TCTCTTGAAAAGCTTCGCATTTCCAGTTGTAAAAAATTAAGCAAGATTGGAGATGGATTATCTAC
CTCCACTTGTCTCAAAGAATTAGAGCTAGAAGATTGTCCTAATTTAAGTTCGATCCCAAATTTGG
AAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAGTTGCAACAAATTGGAAGTTCTTCCAATAA
CTGGAGGATGTTCA
Found at i:110940836 original size:17 final size:17
Alignment explanation
Indices: 110940814--110940846 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
110940804 CTTTATTAGG
110940814 AAATTTCTT-TTCTTTTC
1 AAATTT-TTATTCTTTTC
110940831 AAATTTTTATTCTTTT
1 AAATTTTTATTCTTTT
110940847 GTATTTGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (17 bp):
AAATTTTTATTCTTTTC
Found at i:110942223 original size:13 final size:13
Alignment explanation
Indices: 110942207--110942233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
110942197 AGGCTTTTAA
110942207 ACAAGCAATTTGG
1 ACAAGCAATTTGG
110942220 ACAAGCAATTTGG
1 ACAAGCAATTTGG
110942233 A
1 A
110942234 TCCACTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
ACAAGCAATTTGG
Found at i:110943209 original size:16 final size:16
Alignment explanation
Indices: 110943188--110943238 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
110943178 AATAGTAAAA
*
110943188 TTTATTATTTTTATGT
1 TTTATTATTTTTATAT
110943204 TTTATT-TTTTGTATAT
1 TTTATTATTTT-TATAT
*
110943220 TTT-TAATTTTTAATAT
1 TTTATTATTTTT-ATAT
110943236 TTT
1 TTT
110943239 TGTAATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTATTATTTTTATAT
Found at i:110943220 original size:24 final size:25
Alignment explanation
Indices: 110943193--110943249 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 25
110943183 TAAAATTTAT
110943193 TATTTTTATGTTTT-AT-TTTTTGTA
1 TATTTTTAT-TTTTAATATTTTTGTA
110943217 TATTTTTAATTTTTAATATTTTTGTA
1 TATTTTT-ATTTTTAATATTTTTGTA
110943243 -ATTTTTA
1 TATTTTTA
110943250 AATATTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 12 0.40
25 10 0.33
26 8 0.27
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (25 bp):
TATTTTTATTTTTAATATTTTTGTA
Found at i:110943230 original size:18 final size:17
Alignment explanation
Indices: 110943219--110943260 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 17
110943209 TTTTTGTATA
110943219 TTTTTAATTTTTAATAT
1 TTTTTAATTTTTAATAT
110943236 TTTTGTAATTTTTAAATAT
1 TTTT-TAATTTTT-AATAT
110943255 TCTTTT
1 T-TTTT
110943261 TTACAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.18
18 8 0.36
19 7 0.32
20 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTTAATTTTTAATAT
Found at i:110943249 original size:25 final size:25
Alignment explanation
Indices: 110943193--110943250 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
110943183 TAAAATTTAT
110943193 TATTTTT-ATGTTTTATTTTTTGTA
1 TATTTTTAATGTTTTATTTTTTGTA
110943217 TATTTTTAAT-TTTTAATATTTTTGTA
1 TATTTTTAATGTTTT-AT-TTTTTGTA
110943243 -ATTTTTAA
1 TATTTTTAA
110943251 ATATTCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.35
25 12 0.39
26 8 0.26
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (25 bp):
TATTTTTAATGTTTTATTTTTTGTA
Found at i:110947781 original size:131 final size:131
Alignment explanation
Indices: 110947493--110947787 Score: 333
Period size: 131 Copynumber: 2.3 Consensus size: 131
110947483 AAAAATTCTT
** * *
110947493 CAAAACGAAGACGGGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCA
1 CAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTATTGGGTTGCA
** * * * *
110947558 ATTCCGCGTTTGCTTGAAATAATCGAATATCACTTCAAAATTTCACTCACGACTTTTAAAATTCC
66 ATTCCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACGACTTCTAAAAATAC
110947623 C
131 C
* *
110947624 CAAAACGAAGACAAGGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTATTGGGTTGCA
1 CAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTATTGGGTTGCA
** ** * * * *
110947689 ATTTTGCGTTTGCTCAAAATAATCGGGCT-TCCCTTCAAAATTCCATTTA-TATCTTCTAAAAAT
66 ATTCCGCGTTTGCTCAAAATAATC-GAATATCACTTCAAAATTCCACTCACGA-CTTCTAAAAAT
**
110947752 ATT
129 ACC
* * *
110947755 TAAAACGAAGACAATATTCGGCGTTTGGCAATT
1 CAAAACGAAGACAAGATTCGACGTTTGGCAATT
110947788 TGAGAATCAA
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
130 1 0.01
131 134 0.98
132 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (131 bp):
CAAAACGAAGACAAGATTCGACGTTTGGCAATTCGCGGAATCGTGCCCTAACGTATTGGGTTGCA
ATTCCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCACTCACGACTTCTAAAAATAC
C
Found at i:110949823 original size:8 final size:8
Alignment explanation
Indices: 110949804--110949882 Score: 51
Period size: 8 Copynumber: 10.0 Consensus size: 8
110949794 AATTAATTTG
110949804 AAATTAAAA
1 AAATT-AAA
110949813 AAATTAAA
1 AAATTAAA
110949821 AAATTAAA
1 AAATTAAA
* *
110949829 AGACT-AA
1 AAATTAAA
*
110949836 AAATAAAA
1 AAATTAAA
*
110949844 AAAAT-AA
1 AAATTAAA
110949851 AAA-TATAA
1 AAATTA-AA
110949859 AAA-TATAA
1 AAATTA-AA
110949867 AAA-TATAA
1 AAATTA-AA
110949875 AAATTAAA
1 AAATTAAA
110949883 TTTTAAATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
6 1 0.02
7 9 0.15
8 42 0.71
9 7 0.12
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (8 bp):
AAATTAAA
Found at i:110949829 original size:16 final size:16
Alignment explanation
Indices: 110949804--110949882 Score: 51
Period size: 15 Copynumber: 5.0 Consensus size: 16
110949794 AATTAATTTG
110949804 AAATTAAAAAAATTAAA
1 AAATT-AAAAAATTAAA
* *
110949821 AAATTAAAAGACT-AA
1 AAATTAAAAAATTAAA
* *
110949836 AAATAAAAAAAAT-AA
1 AAATTAAAAAATTAAA
110949851 AAA-TATAAAAA-TATAA
1 AAATTA-AAAAATTA-AA
110949867 AAA-TATAAAAATTAAA
1 AAATTA-AAAAATTAAA
110949883 TTTTAAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
14 2 0.04
15 22 0.42
16 21 0.40
17 7 0.13
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (16 bp):
AAATTAAAAAATTAAA
Found at i:110949837 original size:15 final size:15
Alignment explanation
Indices: 110949804--110949877 Score: 76
Period size: 16 Copynumber: 4.7 Consensus size: 15
110949794 AATTAATTTG
110949804 AAATTAAAAAAATTAAA
1 AAATTAAAAAAA-T-AA
* *
110949821 AAATTAAAAGACTAA
1 AAATTAAAAAAATAA
*
110949836 AAATAAAAAAAATAA
1 AAATTAAAAAAATAA
*
110949851 AAATATAAAAATATAA
1 AAAT-TAAAAAAATAA
110949867 AAATATAAAAA
1 AAAT-TAAAAA
110949878 TTAAATTTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
15 18 0.37
16 21 0.43
17 10 0.20
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (15 bp):
AAATTAAAAAAATAA
Found at i:110949844 original size:23 final size:23
Alignment explanation
Indices: 110949811--110949882 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
110949801 TTGAAATTAA
* *
110949811 AAAAATTAAAAAATTAAAAGA-CT
1 AAAAATAAAAAAATTAAAA-ATAT
*
110949834 AAAAATAAAAAAAATAAAAATAT
1 AAAAATAAAAAAATTAAAAATAT
*
110949857 AAAAATATAAAAATATAAAAAT-T
1 AAAAATAAAAAAAT-TAAAAATAT
110949880 AAA
1 AAA
110949883 TTTTAAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 1 0.02
23 34 0.81
24 7 0.17
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.21
Consensus pattern (23 bp):
AAAAATAAAAAAATTAAAAATAT
Found at i:110949846 original size:31 final size:31
Alignment explanation
Indices: 110949808--110949882 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
110949798 AATTTGAAAT
*
110949808 TAAAAAAATTAAAAA-ATTAAAAGACTAAAAA
1 TAAAAAAATTAAAAATATAAAAAGA-TAAAAA
* *
110949839 TAAAAAAAATAAAAATATAAAAATATAAAAA
1 TAAAAAAATTAAAAATATAAAAAGATAAAAA
*
110949870 TATAAAAATTAAA
1 TAAAAAAATTAAA
110949883 TTTTAAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 31 0.82
32 7 0.18
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.21
Consensus pattern (31 bp):
TAAAAAAATTAAAAATATAAAAAGATAAAAA
Found at i:110951085 original size:27 final size:27
Alignment explanation
Indices: 110951033--110951095 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
110951023 AAAATTTATT
* *
110951033 ATTTTTATATTTTATAATTTTTTTTGTAA
1 ATTTTTA-ATTTTATAATATTCTTTGT-A
110951062 ATTTTTAATTTT-TAATATTCTTTGTA
1 ATTTTTAATTTTATAATATTCTTTGTA
110951088 ATTTTTAA
1 ATTTTTAA
110951096 ATATTCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 9 0.28
27 11 0.34
28 5 0.16
29 7 0.22
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (27 bp):
ATTTTTAATTTTATAATATTCTTTGTA
Found at i:110951089 original size:19 final size:20
Alignment explanation
Indices: 110951067--110951104 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
110951057 TGTAAATTTT
110951067 TAATTTTT-AATATTCTTTG
1 TAATTTTTAAATATTCTTTG
110951086 TAATTTTTAAATATTCTTT
1 TAATTTTTAAATATTCTTT
110951105 TTTTACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TAATTTTTAAATATTCTTTG
Found at i:110958616 original size:22 final size:22
Alignment explanation
Indices: 110958581--110958624 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
110958571 TTAATTTACA
*
110958581 TTTTAGTCCCTAAATTATTTTTT
1 TTTTAGTCCCTAAAGT-TTTTTT
*
110958604 TTTTA-TCCTTAAAGTTTTTTT
1 TTTTAGTCCCTAAAGTTTTTTT
110958625 CTCACTTCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.20, C:0.11, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTTAGTCCCTAAAGTTTTTTT
Found at i:110959559 original size:9 final size:9
Alignment explanation
Indices: 110959547--110959596 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
110959537 TTTTAATTAT
110959547 TTATTAAAA
1 TTATTAAAA
110959556 TTATTAAAA
1 TTATTAAAA
110959565 TTATTAAAGA
1 TTATTAAA-A
*
110959575 GTA-TAAAA
1 TTATTAAAA
*
110959583 TTATAAAAA
1 TTATTAAAA
*
110959592 ATATT
1 TTATT
110959597 TTTGATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
8 3 0.09
9 28 0.82
10 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (9 bp):
TTATTAAAA
Found at i:110960619 original size:21 final size:20
Alignment explanation
Indices: 110960595--110960634 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
110960585 TAAAAAAAAA
110960595 TTAACATTGTAAAAAATTAAT
1 TTAA-ATTGTAAAAAATTAAT
*
110960616 TTAAATTTTAAAAAATTAA
1 TTAAATTGTAAAAAATTAA
110960635 AAAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (20 bp):
TTAAATTGTAAAAAATTAAT
Found at i:110961664 original size:21 final size:21
Alignment explanation
Indices: 110961629--110961668 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
110961619 GTTGGTTGAA
110961629 GAGGCTCAAAGATGTTGCTTAC
1 GAGGCTCAAAGATG-TGCTTAC
*
110961651 GAGGC-CAATGATGTGCTT
1 GAGGCTCAAAGATGTGCTT
110961669 GATGAGTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (21 bp):
GAGGCTCAAAGATGTGCTTAC
Found at i:110967377 original size:33 final size:34
Alignment explanation
Indices: 110967340--110967413 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
110967330 CGAAAAATCT
*
110967340 TAAAAATAATCT-TT-AAAAATGGAAAAAAAAAAC
1 TAAAAATAAT-TATTGAAAAAAGGAAAAAAAAAAC
* *
110967373 TAAAAA-AATTATTGAAAAAAGGAAAAATAAAAT
1 TAAAAATAATTATTGAAAAAAGGAAAAAAAAAAC
110967406 TACAAAAT
1 TA-AAAAT
110967414 TAAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
31 1 0.03
32 5 0.15
33 24 0.71
34 4 0.12
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.22
Consensus pattern (34 bp):
TAAAAATAATTATTGAAAAAAGGAAAAAAAAAAC
Found at i:110967420 original size:22 final size:21
Alignment explanation
Indices: 110967395--110967440 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
110967385 TGAAAAAAGG
110967395 AAAAATAAAATTACAAAAT-TAA
1 AAAAATAAAA-TA-AAAATATAA
*
110967417 AAAAATAATATAAAAATATAA
1 AAAAATAAAATAAAAATATAA
110967438 AAA
1 AAA
110967441 GTTAACTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 8 0.36
22 9 0.41
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAATAAAATAAAAATATAA
Found at i:110967461 original size:29 final size:27
Alignment explanation
Indices: 110967429--110967482 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
110967419 AAATAATATA
110967429 AAAATATAAAAAGTTAACTATTTTTTTTT
1 AAAATATAAAAAGTTAA-T-TTTTTTTTT
* *
110967458 AAAATATAGAAATTTAATTTTTTTT
1 AAAATATAAAAAGTTAATTTTTTTT
110967483 AAATATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 1 0.04
29 15 0.65
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (27 bp):
AAAATATAAAAAGTTAATTTTTTTTTT
Found at i:110974060 original size:6 final size:6
Alignment explanation
Indices: 110974051--110974082 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
110974041 TCACCACCAG
110974051 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA
1 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA
110974083 ACAACAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (6 bp):
CAGCAT
Found at i:110976289 original size:15 final size:15
Alignment explanation
Indices: 110976263--110976334 Score: 58
Period size: 15 Copynumber: 4.7 Consensus size: 15
110976253 TTTTATACTA
*
110976263 TAAAACATTTATTAT
1 TAAAATATTTATTAT
* *
110976278 TAATATATTTATAATT
1 TAAAATATTTATTA-T
110976294 GTACTAAATATTTATTAT
1 -TA--AAATATTTATTAT
*
110976312 TAAAATA-TTAATAT
1 TAAAATATTTATTAT
110976326 T-AAATATTT
1 TAAAATATTT
110976335 TCAATAATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
13 5 0.11
14 9 0.20
15 16 0.35
16 1 0.02
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (15 bp):
TAAAATATTTATTAT
Found at i:110976441 original size:22 final size:22
Alignment explanation
Indices: 110976401--110976456 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
110976391 AATAAAATTG
*
110976401 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
110976421 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
110976443 TATTAATAATTTAT
1 AAATAATAAATTAT
110976457 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:110977784 original size:12 final size:12
Alignment explanation
Indices: 110977769--110977796 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
110977759 TTTTTATTTA
110977769 TTTATTTTGAAT
1 TTTATTTTGAAT
110977781 TTTATTTTGAAT
1 TTTATTTTGAAT
110977793 TTTA
1 TTTA
110977797 GTTAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (12 bp):
TTTATTTTGAAT
Found at i:110979393 original size:215 final size:215
Alignment explanation
Indices: 110979022--110979452 Score: 713
Period size: 215 Copynumber: 2.0 Consensus size: 215
110979012 TGCCTTCTTG
* * *
110979022 AAAACTCGAGATTTACGGCGGTCGGTGGTCCCGACATGCTCTACGATGTAAATGGAAGCCCTTTT
1 AAAACTCGAGATTTACGGCGGTCGATGGTCCCGACATGCTCCACGATGTAAATGGAAGACCTTTT
* * *
110979087 GGACCCTTCGGTCTTGAGTTCTCCTTGATAACAGGCTTGTAGGTTGTGAGTACAACAACTTGGGA
66 GGACCCTTCGATCTTGACTTCTCCTTGATAACAGGCTTGTAGGTCGTGAGTACAACAACTTGGGA
* * *
110979152 TTGTGGTTCTCGTTTTCTCTCATCATCCCACTGCAGTTTATGACAACAAATGGAAAGTGGTCAAA
131 TTGTGGTTCTCGTTTTCTCTCATCATCCCACTGCAGCTTACGACAACAAATGGAAAGTAGTCAAA
110979217 CTAGGGTTTGTCTCCTCTCA
196 CTAGGGTTTGTCTCCTCTCA
*
110979237 AAAACTCGAGATTTATGGCGGTCGATGG-CCTCGACATGCTCCACGATGTAAATGGCAA-ACCTT
1 AAAACTCGAGATTTACGGCGGTCGATGGTCC-CGACATGCTCCACGATGTAAATGG-AAGACCTT
110979300 TTGGACCCTTCGATCTTGACTTCTCCTTGATAACAGGCTTGTAGGTCGTGAGTACAACAACTTGG
64 TTGGACCCTTCGATCTTGACTTCTCCTTGATAACAGGCTTGTAGGTCGTGAGTACAACAACTTGG
* * *
110979365 GATTGTGGTTCTTGTTTTCTCTCATCATCCCATTGCAGCTTACGACAACAAATGGAAAGTAGTCG
129 GATTGTGGTTCTCGTTTTCTCTCATCATCCCACTGCAGCTTACGACAACAAATGGAAAGTAGTCA
110979430 AACTAGGGTTTGTCTCCTCTCA
194 AACTAGGGTTTGTCTCCTCTCA
110979452 A
1 A
110979453 GTTGGGCTAG
Statistics
Matches: 201, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
214 2 0.01
215 197 0.98
216 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (215 bp):
AAAACTCGAGATTTACGGCGGTCGATGGTCCCGACATGCTCCACGATGTAAATGGAAGACCTTTT
GGACCCTTCGATCTTGACTTCTCCTTGATAACAGGCTTGTAGGTCGTGAGTACAACAACTTGGGA
TTGTGGTTCTCGTTTTCTCTCATCATCCCACTGCAGCTTACGACAACAAATGGAAAGTAGTCAAA
CTAGGGTTTGTCTCCTCTCA
Found at i:110982483 original size:47 final size:47
Alignment explanation
Indices: 110982432--110982526 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
110982422 AATAGGCCTA
110982432 TTTAATAATAAAAGATTTAATTTGATTCTGTTCCCAATTTTTAACTT
1 TTTAATAATAAAAGATTTAATTTGATTCTGTTCCCAATTTTTAACTT
110982479 TTTAATAATAAAAGATTTAATTTGATTCTGTTCCCAATTTTTAACTT
1 TTTAATAATAAAAGATTTAATTTGATTCTGTTCCCAATTTTTAACTT
110982526 T
1 T
110982527 CTTTTTTCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (47 bp):
TTTAATAATAAAAGATTTAATTTGATTCTGTTCCCAATTTTTAACTT
Found at i:110985938 original size:6 final size:6
Alignment explanation
Indices: 110985927--110985954 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
110985917 ACAATTTTAC
110985927 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
110985955 GCCCGTTGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:110986228 original size:19 final size:20
Alignment explanation
Indices: 110986193--110986230 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
110986183 TCATATTTCA
110986193 ATATTTAAAATATAATTTTT
1 ATATTTAAAATATAATTTTT
*
110986213 ATATTTAAATTA-AATTTT
1 ATATTTAAAATATAATTTT
110986231 ACAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATTTAAAATATAATTTTT
Found at i:110988511 original size:12 final size:12
Alignment explanation
Indices: 110988494--110988518 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
110988484 AAAATTTATG
110988494 TGATAGGTAATA
1 TGATAGGTAATA
110988506 TGATAGGTAATA
1 TGATAGGTAATA
110988518 T
1 T
110988519 TAATTTAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TGATAGGTAATA
Found at i:110991359 original size:11 final size:11
Alignment explanation
Indices: 110991345--110991385 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
110991335 TGTTTTCTCC
110991345 CTATTTTGCTA
1 CTATTTTGCTA
*
110991356 CTATTTTACTA
1 CTATTTTGCTA
* *
110991367 TTATATTGCTA
1 CTATTTTGCTA
110991378 CTATTTTG
1 CTATTTTG
110991386 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:110992830 original size:3 final size:3
Alignment explanation
Indices: 110992818--110992868 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
110992808 AAGTAAAAGA
110992818 TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
110992864 TAT TA
1 TAT TA
110992869 ATGTTAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:110993381 original size:22 final size:22
Alignment explanation
Indices: 110993356--110993401 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
110993346 GTTTGGTAGG
* *
110993356 GAATTGAGTAATAAAAAGATAT
1 GAATTGAATAAGAAAAAGATAT
*
110993378 GAATTGAATAAGAAAAATATAT
1 GAATTGAATAAGAAAAAGATAT
110993400 GA
1 GA
110993402 GTTTAGTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26
Consensus pattern (22 bp):
GAATTGAATAAGAAAAAGATAT
Found at i:110993795 original size:40 final size:39
Alignment explanation
Indices: 110993733--110993812 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
110993723 AATTATGGGA
**
110993733 TACTGAATATTATTTTGAATACTGAATTGAACTGTGAAAT
1 TACTGAATATTATTACGAATACTGAATTGAACTGT-AAAT
* * *
110993773 TACTGAATATTGTTACGTATACTGCATTGAACTGTAAAT
1 TACTGAATATTATTACGAATACTGAATTGAACTGTAAAT
110993812 T
1 T
110993813 TTTTGAAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 5 0.14
40 30 0.86
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (39 bp):
TACTGAATATTATTACGAATACTGAATTGAACTGTAAAT
Found at i:110993908 original size:29 final size:31
Alignment explanation
Indices: 110993842--110993909 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 31
110993832 TGTATTACTG
*
110993842 TGAAAATTG-ATCGAAATAATAAATTATAAT
1 TGAAAATTGAATCGAAATAAGAAATTATAAT
* * *
110993872 T-AATATTGAATCGAAAT-GGAAATTGT-AT
1 TGAAAATTGAATCGAAATAAGAAATTATAAT
110993900 TGAAAATTGA
1 TGAAAATTGA
110993910 TTTGAATACC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 3 0.10
29 19 0.61
30 9 0.29
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.34
Consensus pattern (31 bp):
TGAAAATTGAATCGAAATAAGAAATTATAAT
Found at i:110994029 original size:6 final size:6
Alignment explanation
Indices: 110994018--110994051 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
110994008 TATGTGCCGA
* *
110994018 TTACTG TTACTG TTACTA TTACCG TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
110994052 CGATTCGGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
TTACTG
Found at i:110994044 original size:18 final size:18
Alignment explanation
Indices: 110994017--110994051 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
110994007 TTATGTGCCG
*
110994017 ATTACTGTTACTGTTACT
1 ATTACCGTTACTGTTACT
110994035 ATTACCGTTACTGTTAC
1 ATTACCGTTACTGTTAC
110994052 CGATTCGGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
ATTACCGTTACTGTTACT
Found at i:110994108 original size:45 final size:45
Alignment explanation
Indices: 110994031--110994141 Score: 168
Period size: 45 Copynumber: 2.5 Consensus size: 45
110994021 CTGTTACTGT
* * *
110994031 TACTATTACCGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
* *
110994076 TACTGTTACTGTTACCGTTACCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
*
110994121 TACTGTTATTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
110994142 TACTACCGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
Found at i:110994812 original size:9 final size:9
Alignment explanation
Indices: 110994798--110994825 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
110994788 GTATGTGAAA
110994798 TGAATTGGT
1 TGAATTGGT
110994807 TGAATTGGT
1 TGAATTGGT
110994816 TGAATTGGT
1 TGAATTGGT
110994825 T
1 T
110994826 ATGTTTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (9 bp):
TGAATTGGT
Found at i:110998887 original size:19 final size:19
Alignment explanation
Indices: 110998863--110998901 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
110998853 TCATTATTTC
110998863 TATTTCTCTTAATATACTA
1 TATTTCTCTTAATATACTA
110998882 TATTTCTCTTAATATACTA
1 TATTTCTCTTAATATACTA
110998901 T
1 T
110998902 TTACAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTCTCTTAATATACTA
Found at i:111005088 original size:15 final size:15
Alignment explanation
Indices: 111005068--111005098 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
111005058 CCATATCTTA
111005068 GAGATTTTGATCCTC
1 GAGATTTTGATCCTC
111005083 GAGATTTTGATCCTC
1 GAGATTTTGATCCTC
111005098 G
1 G
111005099 GTAGCGGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (15 bp):
GAGATTTTGATCCTC
Found at i:111013584 original size:19 final size:20
Alignment explanation
Indices: 111013550--111013588 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
111013540 TAGGTGCCTG
111013550 CTTCAAGCCATATAGAGCTTT
1 CTTCAAGCCATATAGA-CTTT
111013571 CTTC-AGCC-TATAGACTTT
1 CTTCAAGCCATATAGACTTT
111013589 ATCTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 4 0.22
21 4 0.22
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (20 bp):
CTTCAAGCCATATAGACTTT
Found at i:111015684 original size:53 final size:53
Alignment explanation
Indices: 111015528--111015693 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
111015518 GACGAAACAT
* **
111015528 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
111015580 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
111015633 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
111015687 TATGTGA
1 -ATGTGA
111015694 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:111023197 original size:53 final size:53
Alignment explanation
Indices: 111023041--111023206 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
111023031 GACGAAACAT
* **
111023041 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
111023093 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
111023146 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
111023200 TATGTGA
1 -ATGTGA
111023207 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:111027995 original size:50 final size:51
Alignment explanation
Indices: 111027918--111028046 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
111027908 GACCATGGAA
*
111027918 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAATGG-CAAATG
111027969 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAATGGCAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAATGGCAAATG
* * * *
111028019 ACAACTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
111028047 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAATGGCAAATG
Found at i:111028232 original size:31 final size:31
Alignment explanation
Indices: 111028024--111028225 Score: 314
Period size: 31 Copynumber: 6.5 Consensus size: 31
111028014 AAATGACAAC
111028024 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
111028055 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
111028086 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
111028117 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
111028148 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
111028179 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
111028210 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
111028226 TGGCTACAAG
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 157 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:111028243 original size:7 final size:7
Alignment explanation
Indices: 111028231--111028259 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
111028221 AGCTTTGGCT
111028231 ACAAGTG
1 ACAAGTG
111028238 ACAAGTG
1 ACAAGTG
111028245 ACAAGTG
1 ACAAGTG
111028252 ACAAGTG
1 ACAAGTG
111028259 A
1 A
111028260 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:111028332 original size:47 final size:48
Alignment explanation
Indices: 111028263--111028388 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 48
111028253 CAAGTGATTT
* *
111028263 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
111028310 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
111028358 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
111028389 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 66 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:111035409 original size:21 final size:20
Alignment explanation
Indices: 111035383--111035426 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
111035373 GACTAATTTT
111035383 TTATGTT-TATAATATATTATA
1 TTATGTTATAT-ATATA-TATA
111035404 TTATGTTATATATATATATA
1 TTATGTTATATATATATATA
111035424 TTA
1 TTA
111035427 AAATTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 12 0.55
22 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
TTATGTTATATATATATATA
Found at i:111036600 original size:17 final size:16
Alignment explanation
Indices: 111036555--111036601 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
111036545 TATGATTTTT
111036555 TTTTTAAATGTTTAATTA
1 TTTTTAAA--TTTAATTA
*
111036573 CTTTT-AATTTAATTTA
1 TTTTTAAATTTAA-TTA
111036589 TTTTTAAATTTAA
1 TTTTTAAATTTAA
111036602 CGTAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 5 0.20
16 7 0.28
17 9 0.36
18 4 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTTTAAATTTAATTA
Found at i:111038464 original size:30 final size:30
Alignment explanation
Indices: 111038428--111038487 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
111038418 CAGAACTAGA
111038428 ACAATTCTCTGTTGGTGTACTCGAATTATC
1 ACAATTCTCTGTTGGTGTACTCGAATTATC
111038458 ACAATTCTCTGTTGGTGTACTCGAATTATC
1 ACAATTCTCTGTTGGTGTACTCGAATTATC
111038488 CTCTAATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (30 bp):
ACAATTCTCTGTTGGTGTACTCGAATTATC
Found at i:111039412 original size:16 final size:16
Alignment explanation
Indices: 111039365--111039403 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
111039355 TATATTTTGC
111039365 TCTAAGATTAATTTTAAA
1 TCTAA-ATT-ATTTTAAA
*
111039383 TTTAAATTATTTTAAA
1 TCTAAATTATTTTAAA
111039399 TCTAA
1 TCTAA
111039404 GTTGTTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 12 0.63
17 3 0.16
18 4 0.21
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (16 bp):
TCTAAATTATTTTAAA
Found at i:111042107 original size:256 final size:256
Alignment explanation
Indices: 111041652--111042166 Score: 1012
Period size: 256 Copynumber: 2.0 Consensus size: 256
111041642 ACCAAAACTA
111041652 ATCTGCGACTACATCTTGTCGCCCCCAAAAGAAAAGTCTTGTAGTGCTACATCTGTAATTACCTT
1 ATCTGCGACTACATCTTGTCGCCCCCAAAAGAAAAGTCTTGTAGTGCTACATCTGTAATTACCTT
111041717 TTAATTGGCCTCTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAAATATTCCTGAAATAG
66 TTAATTGGCCTCTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAAATATTCCTGAAATAG
111041782 TCAGAGTCCAACTGGGAGAAGAAGTCCTACTTGAAGTCTAAAACGCGACTGTAAAATAGGAGAAT
131 TCAGAGTCCAACTGGGAGAAGAAGTCCTACTTGAAGTCTAAAACGCGACTGTAAAATAGGAGAAT
*
111041847 ACGTCATGACGCGTCAATTCTCCTCGTCATGATGTCAATGCCGCATTTTCCTGGGGTTTTC
196 ACGTCATGACGCGTCAATTCTCCTAGTCATGATGTCAATGCCGCATTTTCCTGGGGTTTTC
*
111041908 ATCTGCGACTACATCTTGTCGTCCCCAAAAGAAAAGTCTTGTAGTGCTACATCTGTAATTACCTT
1 ATCTGCGACTACATCTTGTCGCCCCCAAAAGAAAAGTCTTGTAGTGCTACATCTGTAATTACCTT
111041973 TTAATTGGCCTCTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAAATATTCCTGAAATAG
66 TTAATTGGCCTCTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAAATATTCCTGAAATAG
111042038 TCAGAGTCCAACTGGGAGAAGAAGTCCTACTTGAAGTCTAAAACGCGACTGTAAAATAGGAGAAT
131 TCAGAGTCCAACTGGGAGAAGAAGTCCTACTTGAAGTCTAAAACGCGACTGTAAAATAGGAGAAT
111042103 ACGTCATGACGCGTCAATTCTCCTAGTCATGATGTCAATGCCGCATTTTCCTGGGGTTTTC
196 ACGTCATGACGCGTCAATTCTCCTAGTCATGATGTCAATGCCGCATTTTCCTGGGGTTTTC
111042164 ATC
1 ATC
111042167 GCGTTGTCCT
Statistics
Matches: 257, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
256 257 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (256 bp):
ATCTGCGACTACATCTTGTCGCCCCCAAAAGAAAAGTCTTGTAGTGCTACATCTGTAATTACCTT
TTAATTGGCCTCTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAAATATTCCTGAAATAG
TCAGAGTCCAACTGGGAGAAGAAGTCCTACTTGAAGTCTAAAACGCGACTGTAAAATAGGAGAAT
ACGTCATGACGCGTCAATTCTCCTAGTCATGATGTCAATGCCGCATTTTCCTGGGGTTTTC
Found at i:111048260 original size:36 final size:36
Alignment explanation
Indices: 111048216--111048302 Score: 158
Period size: 36 Copynumber: 2.4 Consensus size: 36
111048206 TTAAGCCCCC
111048216 AAAA-AAAAACCTAACCCCCCCAAAAAAAAGAAGAA
1 AAAAGAAAAACCTAACCCCCCCAAAAAAAAGAAGAA
*
111048251 AAAAGAAAAACCTAACCCCCCCCAAAAAAAGAAGAA
1 AAAAGAAAAACCTAACCCCCCCAAAAAAAAGAAGAA
111048287 AAAAGAAAAACCTAAC
1 AAAAGAAAAACCTAAC
111048303 AAAAAAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 4 0.08
36 46 0.92
ACGTcount: A:0.64, C:0.25, G:0.07, T:0.03
Consensus pattern (36 bp):
AAAAGAAAAACCTAACCCCCCCAAAAAAAAGAAGAA
Found at i:111048368 original size:12 final size:12
Alignment explanation
Indices: 111048351--111048380 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
111048341 TCCCACTTGC
111048351 CCCATTTTTCCT
1 CCCATTTTTCCT
111048363 CCCATTTTTCCT
1 CCCATTTTTCCT
111048375 CCCATT
1 CCCATT
111048381 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:111050884 original size:12 final size:12
Alignment explanation
Indices: 111050867--111050902 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
111050857 ATTCATTTGA
111050867 CATTCATGCATT
1 CATTCATGCATT
111050879 CATTCATGCATT
1 CATTCATGCATT
*
111050891 CATTCATACATT
1 CATTCATGCATT
111050903 GCATATTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:111059494 original size:187 final size:186
Alignment explanation
Indices: 111059160--111059591 Score: 524
Period size: 187 Copynumber: 2.3 Consensus size: 186
111059150 CTTTTCAAGG
* * * *
111059160 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTTAATTGT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTGT
*
111059225 TTGTTTTCAAAATCACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTTA
65 TTGTTTTCAAAATCACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTTA
** **
111059290 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTGTTTTTC
130 GTTTTAAATCAACTCATATTGCGAGAGGTG-GTTGAA-CCTTTTAATTTCTACTTTTTC
* * *
111059347 AAAATCAACTCATATTGCTAGAGGTGAGTTGAG-C-CGGGGCACGCTGAGGTATTTTCAATT-TT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGTT
** *
111059409 TGTTTT-AATTTCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAGGCACG-TGA-TTAATTTAA
66 TGTTTTCAAAATC-ACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGCACGCTGAGGT-A-TT--
* *
111059470 TTTCTGTTTGTCGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTC
126 TTT-AGTTT-T-AAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTC
* *
111059534 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC-GAGGTATTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
111059592 NTAAATGGAA
Statistics
Matches: 212, Mismatches: 21, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
180 1 0.00
181 4 0.02
182 27 0.13
183 22 0.10
184 11 0.05
185 17 0.08
186 16 0.08
187 93 0.44
188 13 0.06
189 8 0.04
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (186 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGTT
TGTTTTCAAAATCACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTTAG
TTTTAAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTC
Found at i:111059500 original size:66 final size:66
Alignment explanation
Indices: 111059330--111059511 Score: 194
Period size: 66 Copynumber: 2.7 Consensus size: 66
111059320 AGTTAAGCCT
* **
111059330 TTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCGGGGCACGCTGAG
1 TTTAATTTTTG-TTTTC--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCCAGGCACGCTGAG
*
111059395 GTAT
63 GTAA
111059399 TTTCAATTTTTGTTTT-AATTTCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGCACG-TGA
1 TTT-AATTTTTGTTTTCAA--TCAACTCATATTGCGAGAGGTGAGTTGAGCC-CAGGCACGCTGA
*
111059461 -TTAA
62 GGTAA
*
111059465 TTTAATTTCTGTTTGTCGAATCAACTCATATTGCGAGAGGTG-GTTGA
1 TTTAATTTTTGTTT-TC-AATCAACTCATATTGCGAGAGGTGAGTTGA
111059512 ACCTTTTAAT
Statistics
Matches: 99, Mismatches: 6, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
65 10 0.10
66 31 0.31
67 18 0.18
68 25 0.25
69 7 0.07
70 8 0.08
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (66 bp):
TTTAATTTTTGTTTTCAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCAGGCACGCTGAGGTA
A
Found at i:111059524 original size:51 final size:54
Alignment explanation
Indices: 111059465--111059565 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 54
111059455 ACGTGATTAA
* *
111059465 TTTAATTTCT-GTTTGTC-GAATCAACTCATATTGCGAGAGGTG-GTTGAACCT
1 TTTAATTTCTACTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
* *
111059516 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
1 TTTAATTTCTACTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGA
111059566 GCCTCAGGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 10 0.23
52 5 0.12
53 23 0.53
54 5 0.12
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (54 bp):
TTTAATTTCTACTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
Found at i:111061026 original size:46 final size:44
Alignment explanation
Indices: 111060967--111061081 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
111060957 ACAGGACAGA
* *
111060967 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
111061013 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
111061057 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
111061082 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:111061062 original size:44 final size:45
Alignment explanation
Indices: 111060967--111061100 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
111060957 ACAGGACAGA
* *
111060967 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
111061013 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
111061057 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
111061101 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:111067160 original size:46 final size:44
Alignment explanation
Indices: 111067101--111067215 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
111067091 ACAGGACAGA
* *
111067101 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
111067147 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
111067191 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
111067216 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:111067196 original size:44 final size:45
Alignment explanation
Indices: 111067101--111067234 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
111067091 ACAGGACAGA
* *
111067101 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
111067147 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
111067191 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
111067235 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:111073296 original size:46 final size:44
Alignment explanation
Indices: 111073237--111073351 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
111073227 ACAGGACAGA
* *
111073237 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
111073283 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
111073327 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
111073352 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:111073332 original size:44 final size:45
Alignment explanation
Indices: 111073237--111073370 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
111073227 ACAGGACAGA
* *
111073237 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
111073283 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
111073327 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
111073371 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:111076184 original size:26 final size:26
Alignment explanation
Indices: 111076153--111076260 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
111076143 TGAAATGCCC
*
111076153 ATCATAGAACATTTACCTAAACCATT
1 ATCATAGAACATTTACCTAACCCATT
111076179 ATCATAGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAACCCATT
* *
111076205 ATCATAGAATATTTACCTAATCCATT
1 ATCATAGAACATTTACCTAACCCATT
*
111076231 ATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAACCCATT
111076257 ATCA
1 ATCA
111076261 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATAGAACATTTACCTAACCCATT
Found at i:111077081 original size:49 final size:50
Alignment explanation
Indices: 111076984--111077082 Score: 121
Period size: 49 Copynumber: 2.0 Consensus size: 50
111076974 ATCTCAAACA
* *
111076984 AATTTACACATAATAAAAAATCACAAGTCTAACAAAATAACTACTATGCAT
1 AATTTACACA-AATAAAAAATCACAACTATAACAAAATAACTACTATGCAT
* * *
111077035 AATTTACAC-AATAAAAAATTACAACTATAATAAAGTAAC-ACTTATGCA
1 AATTTACACAAATAAAAAATCACAACTATAACAAAATAACTAC-TATGCA
111077083 CACAAAACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.05
49 31 0.74
51 9 0.21
ACGTcount: A:0.54, C:0.16, G:0.04, T:0.26
Consensus pattern (50 bp):
AATTTACACAAATAAAAAATCACAACTATAACAAAATAACTACTATGCAT
Found at i:111078535 original size:15 final size:14
Alignment explanation
Indices: 111078510--111078543 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
111078500 ATCCAAAGTT
*
111078510 AGTGATGATGCATG
1 AGTGATGATGCACG
111078524 AGTGATTGATGCACG
1 AGTGA-TGATGCACG
111078539 AGTGA
1 AGTGA
111078544 AACATGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.29, C:0.09, G:0.35, T:0.26
Consensus pattern (14 bp):
AGTGATGATGCACG
Found at i:111080151 original size:27 final size:27
Alignment explanation
Indices: 111080121--111080178 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
111080111 TCAGATTATT
111080121 TCAACCACGAATCATTTCAAATTCAAG
1 TCAACCACGAATCATTTCAAATTCAAG
*****
111080148 TCAATTTTTAATCATTTCAAATTCAAG
1 TCAACCACGAATCATTTCAAATTCAAG
111080175 TCAA
1 TCAA
111080179 TTCTTACTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (27 bp):
TCAACCACGAATCATTTCAAATTCAAG
Found at i:111082469 original size:109 final size:110
Alignment explanation
Indices: 111082278--111082516 Score: 320
Period size: 109 Copynumber: 2.2 Consensus size: 110
111082268 CATTTTTTAA
111082278 ATTAGTTGCCTTGGACATATGCCGCCATGCAATAGCTAATTTATATCCGTTTGTTGATTTTTCCA
1 ATTAGTTGCCTTGGACATATGCCGCCATGCAATAGCTAATTTATATCCGTTTGTTGATTTTTCCA
** **
111082343 TTGGGAATCATCGTTTCATTCTTGAAACCCCA-TTCTGTATACCG
66 TAAGGAATCATCGTTTCATTCTTGAAACCCCATTTCCATATACCG
* * * * * * * * *
111082387 ATTAGATGCCTTGGGCTTATGCTGTCATGCAATTGCTTATTTAT-TTCGATTTGTTGATTTTTCT
1 ATTAGTTGCCTTGGACATATGCCGCCATGCAATAGCTAATTTATATCCG-TTTGTTGATTTTTCC
* *
111082451 GTAAGGAATCATCGTTTCATTCTTGAAACCCCATTTCCATATACTG
65 ATAAGGAATCATCGTTTCATTCTTGAAACCCCATTTCCATATACCG
111082497 ATTAGTTGCCTTGGACATAT
1 ATTAGTTGCCTTGGACATAT
111082517 ATCAAAGCTA
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
108 3 0.03
109 81 0.74
110 26 0.24
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (110 bp):
ATTAGTTGCCTTGGACATATGCCGCCATGCAATAGCTAATTTATATCCGTTTGTTGATTTTTCCA
TAAGGAATCATCGTTTCATTCTTGAAACCCCATTTCCATATACCG
Found at i:111094970 original size:26 final size:25
Alignment explanation
Indices: 111094889--111094970 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 25
111094879 AGTTGAAGAT
* * *
111094889 AAATATTAGTAATTATATTAATTTAT
1 AAATATTATTTATTATA-TAATTTAA
** *
111094915 AAATA-TATTTAGCACATAATTATAA
1 AAATATTATTTATTATATAATT-TAA
*
111094940 TAATATTATTTATTATATAATTTAA
1 AAATATTATTTATTATATAATTTAA
111094965 ACAATA
1 A-AATA
111094971 AATCAGCTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
24 5 0.12
25 15 0.36
26 22 0.52
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (25 bp):
AAATATTATTTATTATATAATTTAA
Found at i:111095308 original size:13 final size:13
Alignment explanation
Indices: 111095290--111095314 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111095280 CACATAGACA
111095290 AAAAAGAAAAAGG
1 AAAAAGAAAAAGG
111095303 AAAAAGAAAAAG
1 AAAAAGAAAAAG
111095315 CTGAGTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAGG
Found at i:111096507 original size:20 final size:21
Alignment explanation
Indices: 111096482--111096528 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
111096472 CATAAACTGA
111096482 TTGAATT-GATAAAAAATTAG
1 TTGAATTGGATAAAAAATTAG
*
111096502 TTGAATTGGATAAAAAATTGG
1 TTGAATTGGATAAAAAATTAG
111096523 TTGAAT
1 TTGAAT
111096529 CAAATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (21 bp):
TTGAATTGGATAAAAAATTAG
Found at i:111097129 original size:10 final size:10
Alignment explanation
Indices: 111097114--111097140 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
111097104 ATTTTTTAAT
111097114 TAAATAAATA
1 TAAATAAATA
111097124 TAAATAAATA
1 TAAATAAATA
111097134 TAAATAA
1 TAAATAA
111097141 TATTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAATAAATA
Found at i:111097205 original size:42 final size:39
Alignment explanation
Indices: 111097103--111097210 Score: 98
Period size: 42 Copynumber: 2.7 Consensus size: 39
111097093 ATAAAAAACC
*
111097103 AATTTTTT-AATTAA-ATAAATATAAATAAATATAAATA
1 AATTTTTTAAATTAATAAAAATATAAATAAATATAAATA
* * *
111097140 ATATTTTATTTAAAAT-ATGAAAATAATTAATAAATATAAAATA
1 A-A-TTT-TTTAAATTAATAAAAAT-ATAAATAAATAT-AAATA
111097183 AATTTTTTACAATTAATAAAAAT-TAAAT
1 AATTTTTTA-AATTAATAAAAATATAAAT
111097211 GTGTGAGATT
Statistics
Matches: 55, Mismatches: 7, Indels: 15
0.71 0.09 0.19
Matches are distributed among these distances:
37 1 0.02
38 1 0.02
39 3 0.05
40 12 0.22
41 13 0.24
42 19 0.35
43 6 0.11
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (39 bp):
AATTTTTTAAATTAATAAAAATATAAATAAATATAAATA
Found at i:111097765 original size:20 final size:20
Alignment explanation
Indices: 111097732--111097779 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
111097722 TCTCTCAATT
*
111097732 ATTTT-TTAAAATTA-ATAA
1 ATTTTATTAAAATTAGAGAA
111097750 ATTTTATTACAAATTAGAGAA
1 ATTTTATTA-AAATTAGAGAA
111097771 ATTCTTATT
1 ATT-TTATT
111097780 TAATTAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 5 0.20
19 3 0.12
20 6 0.24
21 6 0.24
22 5 0.20
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (20 bp):
ATTTTATTAAAATTAGAGAA
Found at i:111110856 original size:12 final size:11
Alignment explanation
Indices: 111110837--111110866 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
111110827 TCCCGCCCAC
111110837 TTTTTTTGTTT
1 TTTTTTTGTTT
111110848 TTGTTTTTGTTT
1 TT-TTTTTGTTT
111110860 TTTTTTT
1 TTTTTTT
111110867 ATTTAGGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:111117746 original size:2 final size:2
Alignment explanation
Indices: 111117739--111117767 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
111117729 GAGACTAGTC
111117739 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
111117768 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:111125286 original size:41 final size:42
Alignment explanation
Indices: 111125220--111125317 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 42
111125210 TAAATAAATA
* *
111125220 TATAAAATACATAAAATTTTCAAAAAAAATT-AAAAAGACTT
1 TATAAAATACATAAAATTCTCAAAAAAAATTCAAAAAGAATT
* * *
111125261 TATAAAATAGATTAAAATTCT-AAAAATAATTCAAAAATAATT
1 TATAAAATACA-TAAAATTCTCAAAAAAAATTCAAAAAGAATT
111125303 TATAAATATA-ATAAA
1 TATAAA-ATACATAAA
111125318 TTTTATATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 23 0.47
42 23 0.47
43 3 0.06
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (42 bp):
TATAAAATACATAAAATTCTCAAAAAAAATTCAAAAAGAATT
Found at i:111125525 original size:23 final size:24
Alignment explanation
Indices: 111125461--111125541 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 24
111125451 TAATTTATAT
111125461 ATTATAATTTTTTAAAAA-AATTAAA
1 ATTATAA-TTTTTAAAAATAA-TAAA
*
111125486 ATTAT--TTTCTCACAAAATAA-AAA
1 ATTATAATTT-TTA-AAAATAATAAA
*
111125509 ATTATAATTTTTAAAAAT-TTAAA
1 ATTATAATTTTTAAAAATAATAAA
111125532 A--ATAATTTTT
1 ATTATAATTTTT
111125542 TAATATAAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
21 9 0.19
22 3 0.06
23 19 0.40
24 6 0.13
25 10 0.21
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTATAATTTTTAAAAATAATAAA
Found at i:111125542 original size:23 final size:22
Alignment explanation
Indices: 111125464--111125544 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
111125454 TTTATATATT
111125464 ATAATTTTTTAAAAAAATT-AAA
1 ATAATTTTTT-AAAAAATTAAAA
* * * *
111125486 ATTATTTTCTCACAAAATAAAAA
1 ATAATTTT-TTAAAAAATTAAAA
* *
111125509 ATTATAATTTTTAAAAATTTAAAA
1 A-TA-ATTTTTTAAAAAATTAAAA
111125533 ATAATTTTTTAA
1 ATAATTTTTTAA
111125545 TATAAAGCTT
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
22 21 0.48
23 7 0.16
24 12 0.27
25 4 0.09
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAATTTTTTAAAAAATTAAAA
Found at i:111128137 original size:13 final size:13
Alignment explanation
Indices: 111128121--111128148 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
111128111 TAATTAAGTA
111128121 AACTAATTTAATT
1 AACTAATTTAATT
111128134 AACTAATTTAATT
1 AACTAATTTAATT
111128147 AA
1 AA
111128149 GTTTAGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
AACTAATTTAATT
Found at i:111129919 original size:30 final size:30
Alignment explanation
Indices: 111129883--111129997 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
111129873 ACTTTTCTCA
*
111129883 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
111129913 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
111129943 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
111129973 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
111129998 CTTGTACCTA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 79 1.00
ACGTcount: A:0.25, C:0.50, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:111130610 original size:25 final size:25
Alignment explanation
Indices: 111130491--111130707 Score: 121
Period size: 25 Copynumber: 8.7 Consensus size: 25
111130481 TTGTTATTAT
111130491 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TTAATATTATATTATGTA
* *
111130515 TATATTCTTT--TAATATATTA-G-G
1 TATATT-TTTAATATTATATTATGTA
* * *
111130537 TATATTTTAAATTTTATATTACGTA
1 TATATTTTTAATATTATATTATGTA
* *
111130562 TATATATATATT-ATACTATTTTATGTA
1 TATAT-T-T-TTAATATTATATTATGTA
* *
111130589 TATATCTTTAATATTATATTATTTA
1 TATATTTTTAATATTATATTATGTA
* *
111130614 TATATTTTTTTTTACATGTTATCTTATGTA
1 TATA----TTTTTA-ATATTATATTATGTA
* *
111130644 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
* * *
111130666 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
*
111130691 CATATTTTTAATATTAT
1 TATATTTTTAATATTAT
111130708 CACGTATTTA
Statistics
Matches: 146, Mismatches: 29, Indels: 35
0.70 0.14 0.17
Matches are distributed among these distances:
21 2 0.01
22 28 0.19
23 12 0.08
24 12 0.08
25 52 0.36
26 1 0.01
27 17 0.12
28 1 0.01
29 5 0.03
30 16 0.11
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATTTTTAATATTATATTATGTA
Found at i:111130882 original size:16 final size:15
Alignment explanation
Indices: 111130858--111130905 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
111130848 TAATTATTAT
*
111130858 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
111130874 TATTTTAATATTTTA
1 TATTTTAATATTTTA
111130889 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
111130905 T
1 T
111130906 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:111130893 original size:7 final size:8
Alignment explanation
Indices: 111130858--111130909 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
111130848 TAATTATTAT
*
111130858 TATTCTAA
1 TATTTTAA
*
111130866 TATTTTGA
1 TATTTTAA
111130874 TATTTTAA
1 TATTTTAA
111130882 TATTTT-A
1 TATTTTAA
111130889 TATTTTATA
1 TATTTTA-A
*
111130898 TATTTTAT
1 TATTTTAA
111130906 TATT
1 TATT
111130910 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:111132441 original size:12 final size:12
Alignment explanation
Indices: 111132424--111132459 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
111132414 ATTCATTTGA
111132424 CATTCATGCATT
1 CATTCATGCATT
111132436 CATTCATGCATT
1 CATTCATGCATT
*
111132448 CATTCATACATT
1 CATTCATGCATT
111132460 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:111140803 original size:71 final size:69
Alignment explanation
Indices: 111140705--111140879 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
111140695 TTTTCAAGAG
* *
111140705 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
111140769 GTTTT
65 GTTTT
* ** * *
111140774 CAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
111140839 TGTTTT
64 TGTTTT
** * *
111140845 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
111140880 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 30 0.33
71 59 0.65
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:111141000 original size:72 final size:71
Alignment explanation
Indices: 111140879--111141030 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 71
111140869 GAGTTAAGCC
* *
111140879 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
111140944 GAGGTA
66 GAGGTA
** *
111140950 TTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTT-AATTTTTGT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
111141014 CTGAGGTA
64 CTGAGGTA
111141022 TTTTAATTT
1 TTTTAATTT
111141031 CTATTTTCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
71 9 0.12
72 61 0.82
73 4 0.05
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.40
Consensus pattern (71 bp):
TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:111141228 original size:140 final size:140
Alignment explanation
Indices: 111140977--111141602 Score: 1157
Period size: 140 Copynumber: 4.5 Consensus size: 140
111140967 TTAATTTCAA
111140977 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT-AATTTCTATTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
111141041 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
111141106 TCAAAATCAG
131 TCAAAATCAG
*
111141116 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
111141181 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
111141246 TCAAAATCAG
131 TCAAAATCAG
*
111141256 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTATTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
*
111141321 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
111141386 TCAAAATCAG
131 TCAAAATCAG
*
111141396 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
*
111141461 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
111141526 TCAAAATCAG
131 TCAAAATCAG
*
111141536 CTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTTCACATGCTGAGGTATTTTCAATTTCTATTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTATTTT
111141600 CAA
63 CAA
111141603 AAAAAAATTC
Statistics
Matches: 473, Mismatches: 10, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 51 0.11
140 394 0.83
142 28 0.06
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:111141317 original size:13 final size:13
Alignment explanation
Indices: 111141299--111141323 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111141289 CACGCTAAGG
111141299 TATTTTCAATTTC
1 TATTTTCAATTTC
111141312 TATTTTCAATTT
1 TATTTTCAATTT
111141324 ACGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:111141459 original size:13 final size:13
Alignment explanation
Indices: 111141441--111141474 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
111141431 CGCTGAGGTA
*
111141441 TTTTCAATTTCTG
1 TTTTCAATTTATG
111141454 TTTTCAATTTATG
1 TTTTCAATTTATG
111141467 TTGTTCAA
1 TT-TTCAA
111141475 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:111141664 original size:76 final size:72
Alignment explanation
Indices: 111141513--111141742 Score: 268
Period size: 72 Copynumber: 3.1 Consensus size: 72
111141503 TGAACCTTTT
* ** ** *
111141513 AATTTCTACTTTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTTCACATGC
1 AATTTCTA--TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGT
*
111141576 TGAGGTATTTTC
61 TGAGGTAATTTC
111141588 AATTTCTATTTTCAAAAAAAAATTCAACTCATATTGC-AGAAATGAGTTGAGCCTCAAGACATGT
1 AATTTCTATTTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGT
111141652 TGAGGTAATTTC
61 TGAGGTAATTTC
* *
111141664 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGG
111141729 TAATTTC
66 TAATTTC
111141736 AATTTCT
1 AATTTCT
111141743 GTTCAAAATG
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
71 19 0.14
72 45 0.33
73 5 0.04
75 8 0.06
76 28 0.20
78 19 0.14
79 14 0.10
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (72 bp):
AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGG
TAATTTC
Found at i:111141756 original size:49 final size:49
Alignment explanation
Indices: 111141699--111141794 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
111141689 ATATTGCGAG
*
111141699 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
111141748 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
111141795 TTCAAAATCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:111141859 original size:120 final size:121
Alignment explanation
Indices: 111141627--111141865 Score: 408
Period size: 120 Copynumber: 2.0 Consensus size: 121
111141617 CATATTGCAG
* *
111141627 AAATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
111141692 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
111141748 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAA-TCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * * *
111141812 TTGCTAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
111141866 TTTCAAAAAA
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
120 59 0.53
121 52 0.47
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:111141916 original size:78 final size:75
Alignment explanation
Indices: 111141748--111142099 Score: 448
Period size: 74 Copynumber: 4.7 Consensus size: 75
111141738 TTTCTGTTCA
*
111141748 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC---AAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
111141809 ATATTGCT-AG
66 ATATTG-TGAG
* *
111141819 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
111141884 CTCATATTGTGAG
63 CTCATATTGTGAG
*
111141897 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAT-AACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
111141961 ATATTGCGAG
66 ATATTGTGAG
** * * *
111141971 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
111142035 GTATTGTGAG
66 ATATTGTGAG
*** * * *
111142045 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
111142100 TTTTGCCTTT
Statistics
Matches: 251, Mismatches: 18, Indels: 18
0.87 0.06 0.06
Matches are distributed among these distances:
71 42 0.17
72 5 0.02
73 12 0.05
74 85 0.34
75 8 0.03
76 23 0.09
77 7 0.03
78 69 0.27
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGTGAG
Found at i:111141928 original size:198 final size:193
Alignment explanation
Indices: 111141574--111141943 Score: 537
Period size: 198 Copynumber: 1.9 Consensus size: 193
111141564 TGGTTCACAT
*
111141574 GCTGAGGTATTTTCAATTTCTATTTTCAAAAAAAAATTCAACTCATATTGCAGAAATGAGTTGAG
1 GCTGAGGTAATTTCAATTTCTATTTTC----AAAAATTCAACTCATATTGCAGAAATGAGTTGAG
* *
111141639 CCTCAAGACATGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATG
62 CCTCAAGACATGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATG
*
111141704 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGAC
127 AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGAC
111141769 AC
192 AC
* *
111141771 GCTGAGGTAATTTCAATTTCTGTTTTC-AAAA-TCAACTCATATTGCTAGAAATTAGTTGAGCCT
1 GCTGAGGTAATTTCAATTTCTATTTTCAAAAATTCAACTCATATTGC-AGAAATGAGTTGAGCCT
* *
111141834 CAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAA
65 CAAGACATGCTGAGGTAATTTCAATTTCTG-TTTTC-----AAAAATCAACTCATATTGCGAGAA
* *
111141899 ATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
124 ATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
111141944 TTTCAAAAAA
Statistics
Matches: 156, Mismatches: 10, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
191 14 0.09
192 48 0.31
193 5 0.03
197 25 0.16
198 64 0.41
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (193 bp):
GCTGAGGTAATTTCAATTTCTATTTTCAAAAATTCAACTCATATTGCAGAAATGAGTTGAGCCTC
AAGACATGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTT
GAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGACAC
Found at i:111142174 original size:93 final size:93
Alignment explanation
Indices: 111142021--111142192 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
111142011 TTCTGTTGTC
* * *
111142021 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
111142086 TTTCCGTTTTTCAATTTTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTTGCCTTTCAAA
* * * *
111142114 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
111142178 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
111142193 AAAAATCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTTGCCTTTCAAA
Found at i:111142222 original size:77 final size:76
Alignment explanation
Indices: 111142114--111142913 Score: 542
Period size: 77 Copynumber: 10.0 Consensus size: 76
111142104 GCCTTTCAAA
*
111142114 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
111142179 TTTCTGTCTTTC
66 TTTCTG-CTTTC
* * *** *
111142191 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGTGCTGAGCTA--TTTT
* **
111142255 CAATTTATATTTTTC
63 CAATTTCT-GCTTTC
* * * * * *
111142270 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCT-GAGCTATTTTCA
** *
111142334 AAATCTGTTTTTC
65 ATTTCTG-CTTTC
*
111142347 AGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 A-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGA
* *
111142412 GCTATTTTCAATTTTTTTTTTCTCTTC
55 GCTATTTTCAA----TTTCTGCT-TTC
* * ** * * *
111142439 -AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGA-GAGTTGAGTTG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--TGGCT-C-ACGTGCTGAGCT-
* *
111142502 AGTCTTTTAATTTCTGTTTTTC
58 A-T-TTTCAATTTCTG-CTTTC
* * ** * *
111142524 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-TCATAT-ATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGTGCT-GAGCTATTTTC
**
111142585 AAAATCTGCTTTTC
64 AATTTCTGC-TTTC
*
111142599 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGA
111142664 GCTATTTTCAATTTCTGCTTTTC
55 GCTATTTTCAATTTCTGC-TTTC
* * * *
111142687 AAAAGAATCAACACATATTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
111142752 TTTCTGCTTTTC
66 TTTCTGC-TTTC
* * * * ** *
111142764 AAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGC-GTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGA-GCTATTTTCA
111142828 ATTTCTGCTTTTC
65 ATTTCTGC-TTTC
* * * * * *
111142841 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTTAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
111142904 TTTCTGCTTT
66 TTTCTGCTTT
111142914 TCAATTTCTG
Statistics
Matches: 584, Mismatches: 83, Indels: 115
0.75 0.11 0.15
Matches are distributed among these distances:
74 4 0.01
75 73 0.12
76 4 0.01
77 205 0.35
78 9 0.02
79 63 0.11
80 35 0.06
81 1 0.00
82 1 0.00
83 1 0.00
84 33 0.06
85 10 0.02
86 9 0.02
87 3 0.01
88 119 0.20
89 7 0.01
90 1 0.00
91 1 0.00
92 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
TTTCTGCTTTC
Done.