Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 378 of 378
Found at i:112783711 original size:6 final size:6
Alignment explanation
Indices: 112783700--112783730 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
112783690 TGAATACTCC
*
112783700 CTTCAT CTTCAT CTTCAT CTTCTT CTTCAT C
1 CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT C
112783731 CTTTTCCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.13, C:0.35, G:0.00, T:0.52
Consensus pattern (6 bp):
CTTCAT
Found at i:112785411 original size:24 final size:24
Alignment explanation
Indices: 112785384--112785442 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
112785374 AGTCTTTTTT
112785384 TTTTGTTAAAATTTCATTCATTTC
1 TTTTGTTAAAATTTCATTCATTTC
* *
112785408 TTTTGTTAAAATTTCGTTTATTTC
1 TTTTGTTAAAATTTCATTCATTTC
*
112785432 TTTGGTTAAAA
1 TTTTGTTAAAA
112785443 GTTAGTCTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.58
Consensus pattern (24 bp):
TTTTGTTAAAATTTCATTCATTTC
Found at i:112791004 original size:67 final size:67
Alignment explanation
Indices: 112790931--112791059 Score: 213
Period size: 67 Copynumber: 1.9 Consensus size: 67
112790921 GTATAAAAAT
* * *
112790931 ATAGGTTCGACTCTTATAAACATTAAATACAAATAAAAATTTGAGATTAAAATTAAACAAATGCA
1 ATAGGTTCGACTCTTATAAACACTAAATACAAATAAAAACTTGAGATTAAAATCAAACAAATGCA
112790996 AC
66 AC
* *
112790998 ATAGGTTCGACTCTTATAAACACTATATACAAATAAAAACTTGAGATTAAAATCGAACAAAT
1 ATAGGTTCGACTCTTATAAACACTAAATACAAATAAAAACTTGAGATTAAAATCAAACAAAT
112791060 ACTCTTGATG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (67 bp):
ATAGGTTCGACTCTTATAAACACTAAATACAAATAAAAACTTGAGATTAAAATCAAACAAATGCA
AC
Found at i:112795283 original size:6 final size:6
Alignment explanation
Indices: 112795272--112795307 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
112795262 TCACGATAGC
* *
112795272 CTTTAT CTTTAT CTGTAT CTTTAT CTTCAT CTTTAT
1 CTTTAT CTTTAT CTTTAT CTTTAT CTTTAT CTTTAT
112795308 TTTTCTTCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.19, G:0.03, T:0.61
Consensus pattern (6 bp):
CTTTAT
Found at i:112795627 original size:16 final size:16
Alignment explanation
Indices: 112795606--112795645 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
112795596 AAGGTTTTGC
112795606 GCTATGTCCGCGCGAT
1 GCTATGTCCGCGCGAT
112795622 GCTATGTCCGCGCGAT
1 GCTATGTCCGCGCGAT
112795638 GCTATGTC
1 GCTATGTC
112795646 GAGGTTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.30, G:0.30, T:0.28
Consensus pattern (16 bp):
GCTATGTCCGCGCGAT
Found at i:112796277 original size:22 final size:23
Alignment explanation
Indices: 112796234--112796295 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
112796224 TATTTTAAAA
* *
112796234 AATATTTATA-TTATATTATTTT
1 AATATTAATATTTTTATTATTTT
*
112796256 AATATTAATATTTTTATTTTTTT
1 AATATTAATATTTTTATTATTTT
*
112796279 ATTTATTAAT-TTTTTAT
1 A-ATATTAATATTTTTAT
112796296 ATAGTTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.26
23 18 0.53
24 7 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
AATATTAATATTTTTATTATTTT
Found at i:112796307 original size:24 final size:24
Alignment explanation
Indices: 112796258--112796305 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
112796248 ATTATTTTAA
* **
112796258 TATTAATATTTTTATTTTTTTATT
1 TATTAATATTTTTATATAGTTATT
112796282 TATTAAT-TTTTTATATAGTTATT
1 TATTAATATTTTTATATAGTTATT
112796305 T
1 T
112796306 TAACATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (24 bp):
TATTAATATTTTTATATAGTTATT
Found at i:112797063 original size:7 final size:7
Alignment explanation
Indices: 112797051--112797082 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
112797041 CCAACCCAAG
112797051 TTTTATT
1 TTTTATT
112797058 TTTTATT
1 TTTTATT
112797065 TTTTATT
1 TTTTATT
112797072 TTTTATT
1 TTTTATT
112797079 TTTT
1 TTTT
112797083 TAAATGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:112798595 original size:9 final size:8
Alignment explanation
Indices: 112798576--112798605 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
112798566 GATAGTCTGG
112798576 AAAAAAT-
1 AAAAAATA
112798583 AAAAAATA
1 AAAAAATA
112798591 AAAAAATA
1 AAAAAATA
112798599 AAAAAAT
1 AAAAAAT
112798606 TGCTACATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATA
Found at i:112801066 original size:31 final size:31
Alignment explanation
Indices: 112801039--112801197 Score: 214
Period size: 31 Copynumber: 5.1 Consensus size: 31
112801029 TATAGCTTCA
* *
112801039 GCTACTTGATCAGTGAAAAGTGGTAGCTTCTG
1 GCTACCTGATCAGTGAAAAGTGGTAGC-TCCG
*
112801071 G-TACCTGATTAGTGAAAAGTGGTAGCTCCG
1 GCTACCTGATCAGTGAAAAGTGGTAGCTCCG
*
112801101 GCTACCTGATCAGAGAAAAGTGGTAGCTCCG
1 GCTACCTGATCAGTGAAAAGTGGTAGCTCCG
112801132 GCTACCTGATCAGTGAAAAGTGGTAG-TACCG
1 GCTACCTGATCAGTGAAAAGTGGTAGCT-CCG
* * * *
112801163 GCTACTTGATTAGTGAATAGTGGTAGCTTCG
1 GCTACCTGATCAGTGAAAAGTGGTAGCTCCG
112801194 GCTA
1 GCTA
112801198 AAGGAGACAA
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
30 5 0.04
31 107 0.94
32 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAGTGGTAGCTCCG
Found at i:112801278 original size:47 final size:46
Alignment explanation
Indices: 112801225--112801345 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 46
112801215 GTGATTTCCA
* *
112801225 TATAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATAC-G
* * *
112801272 TATAAGACCATATCTGGAATATGGCATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACG
* * * *
112801318 TGTAAGTCCATAGCTGGGCTATGGCATC
1 TATAAGACCATATCTGGGATATGGCATC
112801346 GATATATGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
46 24 0.38
47 40 0.62
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACG
Found at i:112801377 original size:42 final size:43
Alignment explanation
Indices: 112801318--112801431 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 43
112801308 ATGTGATTCG
* *
112801318 TGTAAGTCCATAGCTGGGCTATGGCATCGA-TATATGAATATA
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATA
* * *
112801360 TGTAAGACCATAACTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATA
* **
112801402 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
112801432 GAAAATGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATA
Found at i:112816677 original size:13 final size:14
Alignment explanation
Indices: 112816654--112816682 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
112816644 AATATTTAAA
112816654 TAAAAATATAGGCC
1 TAAAAATATAGGCC
112816668 TAAAAA-ATAGGCC
1 TAAAAATATAGGCC
112816681 TA
1 TA
112816683 GACAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.21
Consensus pattern (14 bp):
TAAAAATATAGGCC
Found at i:112816883 original size:11 final size:11
Alignment explanation
Indices: 112816823--112816884 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
112816813 GTTATATTCT
112816823 TATTATTTT-C
1 TATTATTTTAC
*
112816833 TCAATATTTTAC
1 T-ATTATTTTAC
*
112816845 TATCATTTTAC
1 TATTATTTTAC
* *
112816856 TATTATGTTGC
1 TATTATTTTAC
* *
112816867 TGTTATTTTAT
1 TATTATTTTAC
112816878 TATTATT
1 TATTATT
112816885 GTTTGGATAT
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
10 1 0.03
11 36 0.92
12 2 0.05
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.61
Consensus pattern (11 bp):
TATTATTTTAC
Found at i:112819953 original size:4 final size:4
Alignment explanation
Indices: 112819936--112819996 Score: 95
Period size: 4 Copynumber: 15.0 Consensus size: 4
112819926 CAATTAACAT
*
112819936 ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
112819984 ATAAT ATAC ATAC
1 AT-AC ATAC ATAC
112819997 CAGAAAAAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
4 49 0.94
5 3 0.06
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:112823241 original size:29 final size:28
Alignment explanation
Indices: 112823195--112823256 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
112823185 AATATATATG
112823195 ATTTTTAAAATTAAAATTAAAAT-ATAA
1 ATTTTTAAAATTAAAATTAAAATGATAA
*
112823222 ATTTTGTAAATATTAAAATTAAAATGATCA
1 ATTTT-TAAA-ATTAAAATTAAAATGATAA
112823252 ATTTT
1 ATTTT
112823257 ATAAGCAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 5 0.16
28 4 0.13
29 14 0.45
30 8 0.26
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (28 bp):
ATTTTTAAAATTAAAATTAAAATGATAA
Found at i:112827455 original size:31 final size:31
Alignment explanation
Indices: 112827385--112827455 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
112827375 AAAAACCCCA
* * **
112827385 AAGTTCAAGCCTCAATGTGAGAATAATTGTC
1 AAGTTCAAGCCTCAATATGAAAATAATTACC
* * *
112827416 AAGCTCAAGCTTCATTATGAAAATAATTACC
1 AAGTTCAAGCCTCAATATGAAAATAATTACC
112827447 AAGTTCAAG
1 AAGTTCAAG
112827456 GTCTAACTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (31 bp):
AAGTTCAAGCCTCAATATGAAAATAATTACC
Found at i:112827618 original size:38 final size:38
Alignment explanation
Indices: 112827576--112827654 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
112827566 AATTCTAATA
112827576 TAAAAAAAGTCGTAAAGTTGAAACTTCAAATAGTGATC
1 TAAAAAAAGTCGTAAAGTTGAAACTTCAAATAGTGATC
*
112827614 TAAAAAAAGTTGTAAAGTTGAAACTTCAAATAGTGATC
1 TAAAAAAAGTCGTAAAGTTGAAACTTCAAATAGTGATC
112827652 TAA
1 TAA
112827655 CACTTTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (38 bp):
TAAAAAAAGTCGTAAAGTTGAAACTTCAAATAGTGATC
Found at i:112831237 original size:27 final size:27
Alignment explanation
Indices: 112831199--112831253 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
112831189 AGTAGTGTTT
112831199 TATAATGAATCCACTAATTTGCTTACC
1 TATAATGAATCCACTAATTTGCTTACC
112831226 TATAATGAATCCACTAATTTGCTTACC
1 TATAATGAATCCACTAATTTGCTTACC
112831253 T
1 T
112831254 CTCTTCGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (27 bp):
TATAATGAATCCACTAATTTGCTTACC
Found at i:112836996 original size:46 final size:46
Alignment explanation
Indices: 112836817--112836996 Score: 256
Period size: 46 Copynumber: 4.0 Consensus size: 46
112836807 TTTGACATGA
* * * * *
112836817 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTT--TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** *
112836861 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
112836907 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
112836953 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
112836997 AGAGCACACT
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
44 32 0.26
46 91 0.74
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:112839141 original size:11 final size:11
Alignment explanation
Indices: 112839125--112839172 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
112839115 CTTTATATAC
112839125 TAATAAAATAA
1 TAATAAAATAA
*
112839136 TAATAAAATATCT
1 TAATAAAATA--A
* *
112839149 TATTAAAATAT
1 TAATAAAATAA
112839160 TAATAAAATAA
1 TAATAAAATAA
112839171 TA
1 TA
112839173 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:112839683 original size:33 final size:33
Alignment explanation
Indices: 112839646--112839714 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
112839636 GATTAAATTG
* *
112839646 TATTTTATGTATCATTATATTAAATTATTTATA
1 TATTTCATGTATCATTATATTAAATTATTTAAA
112839679 TATTTCATGTATCATTATATTAAATTATTTAAA
1 TATTTCATGTATCATTATATTAAATTATTTAAA
112839712 TAT
1 TAT
112839715 CATATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.55
Consensus pattern (33 bp):
TATTTCATGTATCATTATATTAAATTATTTAAA
Found at i:112845097 original size:93 final size:93
Alignment explanation
Indices: 112844985--112845156 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
112844975 GCCCATAAGT
* *
112844985 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
112845050 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
112845078 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
112845143 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
112845157 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:112845152 original size:46 final size:46
Alignment explanation
Indices: 112844977--112845152 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
112844967 TGTAACCCGC
* * *
112844977 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
112845023 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
112845073 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
112845116 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
112845153 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:112847494 original size:30 final size:30
Alignment explanation
Indices: 112847459--112847538 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
112847449 CAAGAAAACT
*
112847459 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
112847489 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
112847519 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
112847539 CGATACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:112847498 original size:15 final size:15
Alignment explanation
Indices: 112847459--112847529 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
112847449 CAAGAAAACT
112847459 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
112847474 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
112847489 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
112847504 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
112847519 GGATAAAGAAA
1 GAATAAAGAAA
112847530 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:112847538 original size:15 final size:15
Alignment explanation
Indices: 112847461--112847538 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
112847451 AGAAAACTGA
112847461 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
112847476 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
112847490 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
112847505 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
112847521 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
112847536 ATA
1 ATA
112847539 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:112850602 original size:93 final size:93
Alignment explanation
Indices: 112850490--112850661 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
112850480 GCCCATAAGT
* *
112850490 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
112850555 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
112850583 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
112850648 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
112850662 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:112850657 original size:46 final size:46
Alignment explanation
Indices: 112850482--112850657 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
112850472 TGTAACCCGC
* * *
112850482 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
112850528 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
112850578 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
112850621 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
112850658 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:112868999 original size:2 final size:2
Alignment explanation
Indices: 112868992--112869029 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
112868982 ATAGGGATGA
112868992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112869030 GTTTTGGTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:112869166 original size:30 final size:30
Alignment explanation
Indices: 112869132--112869215 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 30
112869122 GTGATTTGTG
*
112869132 AAAATTGA-ATTAAATTAAAATTTCATATAT
1 AAAATTGACATTAAATCAAAATTT-ATATAT
** *
112869162 AAAATT-ACAGAAAATCAAAATTTATGTAT
1 AAAATTGACATTAAATCAAAATTTATATAT
*
112869191 AACATTGTACATTAAATCAAAATTT
1 AAAATTG-ACATTAAATCAAAATTT
112869216 GTGTATAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
29 11 0.25
30 18 0.41
31 15 0.34
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAATTGACATTAAATCAAAATTTATATAT
Found at i:112869550 original size:19 final size:19
Alignment explanation
Indices: 112869526--112869564 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
112869516 TTTACTTTGT
112869526 TAAATTTGAATTTT-TTTTA
1 TAAA-TTGAATTTTATTTTA
*
112869545 TAAATTGGATTTTATTTTA
1 TAAATTGAATTTTATTTTA
112869564 T
1 T
112869565 TTTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (19 bp):
TAAATTGAATTTTATTTTA
Found at i:112873739 original size:12 final size:12
Alignment explanation
Indices: 112873717--112873757 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
112873707 GCATCTCATC
112873717 TTTTTCACTTTTT
1 TTTTTC-CTTTTT
112873730 TTTTTCCTTTTT
1 TTTTTCCTTTTT
*
112873742 CTTTTCCTTTATT
1 TTTTTCCTTT-TT
112873755 TTT
1 TTT
112873758 GAAGATTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTCCTTTTT
Found at i:112879745 original size:15 final size:15
Alignment explanation
Indices: 112879725--112879755 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
112879715 GAACTTTGAA
112879725 GAAAGATTGAGGGGT
1 GAAAGATTGAGGGGT
112879740 GAAAGATTGAGGGGT
1 GAAAGATTGAGGGGT
112879755 G
1 G
112879756 TTAATTGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.19
Consensus pattern (15 bp):
GAAAGATTGAGGGGT
Found at i:112881159 original size:49 final size:49
Alignment explanation
Indices: 112881085--112881182 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
112881075 TCATTGCAAA
* * *
112881085 AGATACCTAACGGAGGGTTGCTTGCAGGTTGTCCCCCACGAAGGGTCAT
1 AGATACCTAACGGAGGGTCGCTTGCAGGCTGTCCCCCACAAAGGGTCAT
* *
112881134 AGATACCTAACGGAGGGTCGTTTGCAGGCTGTCTCCCACAAAGGGTCAT
1 AGATACCTAACGGAGGGTCGCTTGCAGGCTGTCCCCCACAAAGGGTCAT
112881183 TGGCAAGTCG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.22
Consensus pattern (49 bp):
AGATACCTAACGGAGGGTCGCTTGCAGGCTGTCCCCCACAAAGGGTCAT
Found at i:112881894 original size:42 final size:42
Alignment explanation
Indices: 112881847--112881928 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
112881837 ATTCAAACTC
* *
112881847 CCAAATTCATGATTTTTCTTCAAAAACCCT-TAAATTAAATAT
1 CCAAATCCATGATTCTTCTTC-AAAACCCTCTAAATTAAATAT
** *
112881889 CCAAATCCATTCTTCTTCTTCAAAACTCTCTAAATTAAAT
1 CCAAATCCATGATTCTTCTTCAAAACCCTCTAAATTAAAT
112881929 CCTCCATTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 7 0.21
42 27 0.79
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.38
Consensus pattern (42 bp):
CCAAATCCATGATTCTTCTTCAAAACCCTCTAAATTAAATAT
Found at i:112882518 original size:14 final size:14
Alignment explanation
Indices: 112882499--112882531 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
112882489 CTATTCGCGC
112882499 TACATACATAAGTA
1 TACATACATAAGTA
112882513 TACATACATAAGTA
1 TACATACATAAGTA
112882527 TACAT
1 TACAT
112882532 TTTAATCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (14 bp):
TACATACATAAGTA
Found at i:112882832 original size:22 final size:22
Alignment explanation
Indices: 112882802--112882877 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
112882792 TTTTTAAATA
*
112882802 ATTAAATTACAAAAATAATTTT
1 ATTATATTACAAAAATAATTTT
*
112882824 ATTATATTA-AATAATAATTTTT
1 ATTATATTACAAAAATAA-TTTT
* *
112882846 ATAATATTTCAAGTAAAT-ATTTT
1 ATTATATTACAA--AAATAATTTT
*
112882869 ATTTTATTA
1 ATTATATTA
112882878 TTTCAACTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
21 7 0.17
22 19 0.45
23 12 0.29
24 1 0.02
25 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (22 bp):
ATTATATTACAAAAATAATTTT
Found at i:112883131 original size:2 final size:2
Alignment explanation
Indices: 112883124--112883149 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
112883114 CCTAATTTAG
112883124 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
112883150 GAAAACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:112884588 original size:3 final size:3
Alignment explanation
Indices: 112884580--112884606 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
112884570 ACACTATTAT
112884580 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
112884607 TTGAAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:112884711 original size:29 final size:27
Alignment explanation
Indices: 112884663--112884720 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
112884653 ATAAAAAATA
112884663 ATACTATATATAAATATACA-TAC-AT
1 ATACTATATATAAATATACACTACTAT
112884688 ATACGTATATAATAAAAGTATACACTACTAT
1 ATAC-TATAT-AT-AAA-TATACACTACTAT
112884719 AT
1 AT
112884721 TATGATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
25 4 0.15
26 5 0.19
27 2 0.07
28 3 0.11
29 6 0.22
30 3 0.11
31 4 0.15
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.34
Consensus pattern (27 bp):
ATACTATATATAAATATACACTACTAT
Found at i:112884851 original size:29 final size:27
Alignment explanation
Indices: 112884803--112884861 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
112884793 ATAAAAAATA
112884803 ATACTATATATAAATATACA-TAC-AT
1 ATACTATATATAAATATACACTACTAT
112884828 ATACGTATATAATAAAAGTATACACTACTAT
1 ATAC-TATAT-AT-AAA-TATACACTACTAT
112884859 ATA
1 ATA
112884862 AATGATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
25 4 0.14
26 5 0.18
27 2 0.07
28 3 0.11
29 6 0.21
30 3 0.11
31 5 0.18
ACGTcount: A:0.51, C:0.12, G:0.03, T:0.34
Consensus pattern (27 bp):
ATACTATATATAAATATACACTACTAT
Found at i:112885141 original size:3 final size:3
Alignment explanation
Indices: 112885135--112885270 Score: 177
Period size: 3 Copynumber: 44.7 Consensus size: 3
112885125 ACACTACTAT
112885135 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
112885183 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA GA-A ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * *
112885227 ATA ATTA ATA GTA ATA ATAA ACA ACA GAAA ATA ATA ATA ATA AT
1 ATA A-TA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA ATA ATA AT
112885271 TAATTTGAAA
Statistics
Matches: 120, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
2 3 0.03
3 109 0.91
4 8 0.07
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:112885189 original size:140 final size:140
Alignment explanation
Indices: 112884319--112885161 Score: 1248
Period size: 140 Copynumber: 6.0 Consensus size: 140
112884309 TAATACTAGC
* * * * *
112884319 AATAATAATGAAATACAAAAAAAGCAAATATAAT----ATAATAATATAAGGTAATTAAAAATAA
1 AATAATATTGAAATAC-AAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAA
*
112884380 TACTATATATAAATATATATACATATACATACATATATAATAAAAA-TATACACTAATAT-TAAT
65 TACTATATATAAATATATATAC--AT--ATACATATATAATAAAAAGTATACACTACTATATAAT
112884443 AATAATAATGATAATAGT
126 AATAATAATGAT-A-A-T
* *
112884461 AATAATATTGAAGTAC-AAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAGT
1 AATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAAT
* *
112884525 ACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATTATATAATAATAA
66 ACTATATATAAATATATATACATATACATATATAATAAAAAGTATACACTACTATATAATAATAA
*
112884590 TAATAATAAT
131 TAATGATAAT
* *
112884600 AATAATATTGAAATACAAAAAAGCAAAAATAATAAAAGTATTAAAATAAAGTAATAAAAAATAAT
1 AATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAAT
* * * *
112884665 ACTATATATAAATATACATACATATACGTATATAAT-AAAAGTATACACTACTATATTATGATAA
66 ACTATATATAAATATATATACATATACATATATAATAAAAAGTATACACTACTATATAATAATAA
112884729 TAATGATAAT
131 TAATGATAAT
* *
112884739 AATAATATTGAAATACAAAAAAAGCAAATATAATAAGAGTATTAAAATAAAGTAATAAAAAATAA
1 AATAATATTGAAATAC-AAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAA
* * *
112884804 TACTATATATAAATATACATACATATACGTATATAAT-AAAAGTATACACTACTATATAAATGAT
65 TACTATATATAAATATATATACATATACATATATAATAAAAAGTATACACTACTATAT-AATAAT
112884868 AATAATGATAAT
129 AATAATGATAAT
112884880 AATAATATTGAAATAC--AAAA--AAATATAATAAAAATATTAAAATAAAGTAAT-AAAAATAAT
1 AATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAAT
*
112884940 ACTATATATAAATATATATACATATACATATAAAATAAAAAGTATACACTACTATATAATAATAA
66 ACTATATATAAATATATATACATATACATATATAATAAAAAGTATACACTACTATATAATAATAA
112885005 TAATGATAAT
131 TAATGATAAT
* *
112885015 AATAATATTGAAATACAAAAAAACAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAGT
1 AATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAAT
112885080 ACTATATATAAATATATATACATATACATATGA-AATAAAAAGTATACACTACTATATAATAATA
66 ACTATATATAAATATATATACATATACATAT-ATAATAAAAAGTATACACTACTATATAATAATA
*
112885144 ATAATAATAAT
130 ATAATGATAAT
112885155 AATAATA
1 AATAATA
112885162 ATAATAATAA
Statistics
Matches: 655, Mismatches: 30, Indels: 34
0.91 0.04 0.05
Matches are distributed among these distances:
135 75 0.11
136 49 0.07
137 4 0.01
138 4 0.01
139 97 0.15
140 304 0.46
141 47 0.07
142 31 0.05
144 44 0.07
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (140 bp):
AATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAAT
ACTATATATAAATATATATACATATACATATATAATAAAAAGTATACACTACTATATAATAATAA
TAATGATAAT
Found at i:112885189 original size:415 final size:421
Alignment explanation
Indices: 112884299--112885170 Score: 1302
Period size: 415 Copynumber: 2.1 Consensus size: 421
112884289 AATAGTGATG
* * ** * *
112884299 ATAATGATAATAATACTAGCAATAATAATGAAATACAAAAAAAGCAAATATAAT---A-TAATAA
1 ATAATAATAATAATAATAATAATAATAATAAAATACAAAAAAAGCAAATATAATAAGAGTATTAA
* * * *
112884360 TATAAGGTAATTAAAAATAATACTATATATAAATATATATACATATACATACATATATAATAAAA
66 AATAAAGTAATAAAAAATAATACTATATATAAATATACATACA-ATA-ATACATATATAATAAAA
* *
112884425 ATATACACTAATATTAATAATAATAATGATAATAGTAATAATATTGAAGTACAAAAAGCAAATAT
129 ATATACACTAATATAAATAATAATAATGATAATAGTAATAATATTGAAATACAAAAA-CAAATAT
* *
112884490 AATAAAAATATTAAAATAAAGTAATAAAAAATAGTACTATATATAAATATATATACATATACGTA
193 AATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATACATATACATA
* *
112884555 TATAATAAAAAGTATACACTATTATATAATAATAATAATAATAATAATAATATTGAAATACAAAA
258 TAAAATAAAAAGTATACACTACTATATAATAATAATAATAATAATAATAATATTGAAATACAAAA
* *
112884620 AAGCAAAAATAATAAAAGTATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATACATA
323 AAACAAAAATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATACATA
*
112884685 CATATACGTATATAATAAAAGTATACACTACTAT
388 CATATACATATATAATAAAAGTATACACTACTAT
* * * * *
112884719 ATTATGATAATAATGATAATAATAATATTGAAATACAAAAAAAGCAAATATAATAAGAGTATTAA
1 ATAATAATAATAATAATAATAATAATAATAAAATACAAAAAAAGCAAATATAATAAGAGTATTAA
* *
112884784 AATAAAGTAATAAAAAATAATACTATATATAAATATACATAC-AT-ATACGTATATAATAAAAGT
66 AATAAAGTAATAAAAAATAATACTATATATAAATATACATACAATAATACATATATAATAAAAAT
*
112884847 ATACACTACTATATAAATGATAATAATGAT-A-A-TAATAATATTGAAATAC-AAAA-AAATATA
131 ATACACTA--ATATAAATAATAATAATGATAATAGTAATAATATTGAAATACAAAAACAAATATA
112884907 ATAAAAATATTAAAATAAAGTAAT-AAAAATAATACTATATATAAATATATATACATATACATAT
194 ATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATACATATACATAT
*
112884971 AAAATAAAAAGTATACACTACTATATAATAATAATAATGATAATAATAATATTGAAATACAAAAA
259 AAAATAAAAAGTATACACTACTATATAATAATAATAATAATAATAATAATATTGAAATACAAAAA
* * *
112885036 AACAAATATAATAAAAATATTAAAATAAAGTAATAAAAAATAGTACTATATATAAATATATATAC
324 AACAAAAATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATACATAC
112885101 ATATACATATGA-AATAAAAAGTATACACTACTAT
389 ATATACATAT-ATAAT-AAAAGTATACACTACTAT
112885135 ATAATAATAATAATAATAATAATAATAATAATAATA
1 ATAATAATAATAATAATAATAATAATAATAA-AATA
112885171 ATAATAATAA
Statistics
Matches: 411, Mismatches: 32, Indels: 21
0.89 0.07 0.05
Matches are distributed among these distances:
415 172 0.42
416 76 0.18
417 4 0.01
418 4 0.01
419 16 0.04
420 74 0.18
421 1 0.00
422 20 0.05
423 1 0.00
424 43 0.10
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (421 bp):
ATAATAATAATAATAATAATAATAATAATAAAATACAAAAAAAGCAAATATAATAAGAGTATTAA
AATAAAGTAATAAAAAATAATACTATATATAAATATACATACAATAATACATATATAATAAAAAT
ATACACTAATATAAATAATAATAATGATAATAGTAATAATATTGAAATACAAAAACAAATATAAT
AAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATACATATACATATAA
AATAAAAAGTATACACTACTATATAATAATAATAATAATAATAATAATATTGAAATACAAAAAAA
CAAAAATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATACATACAT
ATACATATATAATAAAAGTATACACTACTAT
Found at i:112887056 original size:76 final size:77
Alignment explanation
Indices: 112886830--112887362 Score: 619
Period size: 76 Copynumber: 6.9 Consensus size: 77
112886820 GTAAAAAAAT
* ** * * *
112886830 TAAAAACACCTCAGTATGTGACCTGAGGCTCAACTCGCCTCTCGTAATATGAGTTGATTTTTTTT
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT
112886895 TTGAAAAATAGAAAC
63 TTGAAAAATAGAAAC
* * *
112886910 TAAAAATACCTTAGGGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTA
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
112886974 AAAAATAGGAAC
66 AAAAATAGAAAC
* * * * * * *
112886986 T-AAGATACCTCAGTGTGCGACCCGAGGATCAACTCACTTTTCGTAATATGAGTTGATTTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
112887050 AAAAATAGAAAC
66 AAAAATAGAAAC
* *** * *
112887062 TAAAAATACCTCAGCGCGTGATTTGAGACTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
112887126 AAAAATAGAAAC
66 AAAAATAGAAAC
* * * *** * *
112887138 TAAAAATACATCAACGCGTGATTTGAGGCTCAACTCACCTTTCGTAATATGAGTTGATTTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * *
112887203 AAAAAACATAAAT
66 -AAAAATAGAAAC
* * *
112887216 TAAAAATACCTCAGCGTGTGTCCCGAGGCTCATCTTACCTCTCGCAATATGAGTTGA--TTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
112887279 AAAAATAGAAA-
66 AAAAATAGAAAC
* * *
112887290 TAGAAAATACCTCGGCGTGTAACCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTTT
1 TA-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
112887355 GAAAAATA
65 GAAAAATA
112887363 AAAATATCAG
Statistics
Matches: 390, Mismatches: 56, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
74 2 0.01
75 105 0.27
76 114 0.29
77 64 0.16
78 55 0.14
80 50 0.13
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (77 bp):
TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AAAAATAGAAAC
Found at i:112887277 original size:153 final size:153
Alignment explanation
Indices: 112886830--112887362 Score: 651
Period size: 153 Copynumber: 3.5 Consensus size: 153
112886820 GTAAAAAAAT
* ** * *
112886830 TAAAAACACCTCAGTATGTGACCTGAGGCTCAACTCGCCTCTCGTAATATGAGTTGATTTTTTTT
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA---TTTTT
* * *
112886895 TTGAAAAATAGAAACTAAAAATACCTTAGGGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
63 TTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* *
112886960 GAGTTGATTTTTTAAAAAATAGGAAC
128 GAGTTGATTTTTTGAAAAATAGAAAC
* * * * * *
112886986 T-AAGATACCTCAGTGTGCGACCCGAGGATCAACTCACTTTTCGTAATATGAGTTGATTTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG
* ** * *
112887050 AAAAATAGAAACTAAAAATACCTCAGCGCGTGAT-TTGAGACTCAACTCACCTTTCGCAATATGA
66 AAAAATAGAAACTAAAAATACCTCAGCGTGTG-TCCCGAGGCTCAACTCACCTCTCGCAATATGA
112887114 GTTGATTTTTTGAAAAATAGAAAC
130 GTTGATTTTTTGAAAAATAGAAAC
* * * *** *
112887138 TAAAAATACATCAACGCGTGATTTGAGGCTCAACTCACCTTTCGTAATATGAGTTGATTTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG
* * * * *
112887203 AAAAAACATAAATTAAAAATACCTCAGCGTGTGTCCCGAGGCTCATCTTACCTCTCGCAATATGA
66 -AAAAATAGAAACTAAAAATACCTCAGCGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
112887268 GTTGA-TTTTTGAAAAATAGAAA-
130 GTTGATTTTTTGAAAAATAGAAAC
* * * *
112887290 TAGAAAATACCTCGGCGTGTAACCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTTT
1 TA-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTT
112887355 GAAAAATA
65 GAAAAATA
112887363 AAAATATCAG
Statistics
Matches: 320, Mismatches: 52, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
152 94 0.29
153 122 0.38
154 57 0.18
155 46 0.14
156 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (153 bp):
TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG
AAAAATAGAAACTAAAAATACCTCAGCGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAAATAGAAAC
Found at i:112898375 original size:13 final size:15
Alignment explanation
Indices: 112898356--112898391 Score: 58
Period size: 13 Copynumber: 2.5 Consensus size: 15
112898346 ACGTTTTACT
112898356 TAAAAACT-AAACTA
1 TAAAAACTAAAACTA
112898370 -AAAAACTAAAACTA
1 TAAAAACTAAAACTA
112898384 TAAAAACT
1 TAAAAACT
112898392 TAGAGCTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 7 0.35
14 6 0.30
15 7 0.35
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAAACTAAAACTA
Found at i:112904793 original size:21 final size:21
Alignment explanation
Indices: 112904768--112904811 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
112904758 TATATATATT
*
112904768 ATTACATATTTATCTTTCATA
1 ATTACAAATTTATCTTTCATA
112904789 ATTACAAATTTATCTTTCATA
1 ATTACAAATTTATCTTTCATA
112904810 AT
1 AT
112904812 AATTTATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTACAAATTTATCTTTCATA
Found at i:112905000 original size:18 final size:17
Alignment explanation
Indices: 112904938--112905002 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
112904928 TATCTAAATC
112904938 TATT-TTTCAAACCTAA
1 TATTATTTCAAACCTAA
112904954 TATTATTATC-AACC-AA
1 TATTATT-TCAAACCTAA
112904970 GTCCATT-TTTCAAACCTAA
1 -T--ATTATTTCAAACCTAA
112904989 TATTATTGTCAAAC
1 TATTATT-TCAAAC
112905003 TCTCTTAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 16
0.71 0.00 0.29
Matches are distributed among these distances:
16 9 0.22
17 11 0.28
18 15 0.38
19 5 0.12
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (17 bp):
TATTATTTCAAACCTAA
Found at i:112905299 original size:76 final size:78
Alignment explanation
Indices: 112905161--112905314 Score: 222
Period size: 76 Copynumber: 2.0 Consensus size: 78
112905151 TAGACCATCG
*
112905161 AGATTCAAACACAAAACCATCGCACATAAATACAAACTGTCTGTATCTTCAGCTCATAAACATCC
1 AGATTCAAACACAAAACCATC-CACATAAACACAAACTGTCTGTATCTTCAGCTCATAAACATCC
*
112905226 -CAATAAACCATTA
65 TCAACAAACCATTA
* * * * *
112905239 AGATTCAAACACAGAACCAT-CACATAAACACATACTGTTTGTATCTTCAGTTCATCAACATCCT
1 AGATTCAAACACAAAACCATCCACATAAACACAAACTGTCTGTATCTTCAGCTCATAAACATCCT
112905303 CAACAAACCATT
66 CAACAAACCATT
112905315 GAGAATGTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 38 0.56
77 11 0.16
78 19 0.28
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.25
Consensus pattern (78 bp):
AGATTCAAACACAAAACCATCCACATAAACACAAACTGTCTGTATCTTCAGCTCATAAACATCCT
CAACAAACCATTA
Found at i:112905432 original size:42 final size:42
Alignment explanation
Indices: 112905375--112905508 Score: 180
Period size: 42 Copynumber: 3.2 Consensus size: 42
112905365 ACGTTTTTAG
* * * *
112905375 CTTCAGTAGGTTTTCTTCTAACTCAGCTTTGTCCTTCTCCAG
1 CTTCAGTTGGTTTTCTTTTAACTCAGCTTTGCCCTTCTCCAC
* *
112905417 CTTCAGTTGGTTTTCTTTTAACTCAGCTTCGCCCTGCTCCAC
1 CTTCAGTTGGTTTTCTTTTAACTCAGCTTTGCCCTTCTCCAC
* *
112905459 CTTCAGTTTGTTTTCTTTTAAATCAGCTTCT-CCCTTCTCCAC
1 CTTCAGTTGGTTTTCTTTTAACTCAGCTT-TGCCCTTCTCCAC
112905501 CTTCAGTT
1 CTTCAGTT
112905509 CGCCTTTCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 81 1.00
ACGTcount: A:0.13, C:0.31, G:0.12, T:0.44
Consensus pattern (42 bp):
CTTCAGTTGGTTTTCTTTTAACTCAGCTTTGCCCTTCTCCAC
Found at i:112905870 original size:24 final size:24
Alignment explanation
Indices: 112905840--112905892 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
112905830 ACAGCTTCAT
112905840 ATTGTCTTGATTTTCTCTGGCATC
1 ATTGTCTTGATTTTCTCTGGCATC
112905864 ATTGTCTTGATTTTCTCTGGCATC
1 ATTGTCTTGATTTTCTCTGGCATC
112905888 ATTGT
1 ATTGT
112905893 TTCCCAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.13, C:0.19, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGTCTTGATTTTCTCTGGCATC
Found at i:112910212 original size:2 final size:2
Alignment explanation
Indices: 112910205--112910235 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
112910195 AATACCTTCT
112910205 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112910236 CAGTTGTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112918775 original size:38 final size:39
Alignment explanation
Indices: 112918726--112918800 Score: 125
Period size: 38 Copynumber: 1.9 Consensus size: 39
112918716 TCCCTACTCA
* *
112918726 AATATTTTAGGAGATATTTACCTGTTACTTATAATTCAG
1 AATATTTTAGGAAATATTCACCTGTTACTTATAATTCAG
112918765 AATA-TTTAGGAAATATTCACCTGTTACTTATAATTC
1 AATATTTTAGGAAATATTCACCTGTTACTTATAATTC
112918801 GAGGAGTATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (39 bp):
AATATTTTAGGAAATATTCACCTGTTACTTATAATTCAG
Found at i:112922858 original size:14 final size:14
Alignment explanation
Indices: 112922841--112922871 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
112922831 ATAATATAGT
112922841 ATAATGAATAAAGA
1 ATAATGAATAAAGA
*
112922855 ATAATGAGTAAAGA
1 ATAATGAATAAAGA
112922869 ATA
1 ATA
112922872 GAAAAGTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (14 bp):
ATAATGAATAAAGA
Found at i:112928113 original size:46 final size:46
Alignment explanation
Indices: 112928063--112928151 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
112928053 TAGAAAAGTT
*
112928063 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGATAGAAAGACTA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
* * *
112928109 ACAGAGAGCAAATGTGAGATAGAAAGAAGGAAAGAAAGAAAGA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGA
112928152 AATAAAAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.58, C:0.07, G:0.28, T:0.07
Consensus pattern (46 bp):
ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
Found at i:112933705 original size:2 final size:2
Alignment explanation
Indices: 112933698--112933724 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
112933688 AAGGTTTGGC
112933698 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
112933725 ACTTGGAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:112934974 original size:626 final size:627
Alignment explanation
Indices: 112933722--112936247 Score: 4339
Period size: 626 Copynumber: 4.0 Consensus size: 627
112933712 ATATATATAT
*
112933722 ATAACTTGGAGAAGGCTCGTGAAAGGAAGAAATTGGAAGAAGAGATCAGGGCATATATATATATA
1 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATCAGGGCA-ATATATATATA
* * *
112933787 TATATAATTGAAGTTGCTCATTTTTTTGGATCAATTCTGATTCTCTTCTGCATATAGGATCTTTT
65 TATATAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCATATAGGATCTTTC
* *
112933852 GTCACCGCGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGGCT
130 GTCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGGCT
*
112933917 GCAAGTTGATATTCTATCATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGTGA
195 GCAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGTGA
* *
112933982 CTATAACAATCTTAATGGTCTTTTACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGAC
260 CTATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGAC
*
112934047 ATCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCATAT
325 ATCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCACAT
* * *
112934112 GAGAACATCTCTCCTGTCCAAGGGTATACAACATTTATAGACGCAATGCTAATGTGCTCAATGAG
390 GAGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATGTGCTCACTGAG
* *
112934177 ATATTTCAAAAGCACCCTCATCCTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCATAACA
455 ATATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCAGAACA
*
112934242 TCCTTGCAAACTCTCTAACTGAAGCTGACCATTATATAGAAAGTAAACCAGAGAGGCTCGAGCTA
520 TCCTTGCAAACTCTCTAACTGAAGCTGACCATAATATAGAAAGTAAACCAGAGAGGCTCGAGCTA
*
112934307 AAAGACATCACAAATATAGAGGTAAGGGTGCAAAGCATAAGGA
585 AAAGACATCACAAATATAGAGGTAAGGGTGCAAAACATAAGGA
* * *
112934350 ATAACTTGGAGAAGGCTCGTGAAAGGAAGAAATTGGAAGAAGAGATCAGAGC-ACATATATATAT
1 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATCAGGGCAATATATATATAT
*
112934414 ATATAATTGAAGTTGCTTATTTTTTTGGATCAATTCTGATTCTCTTCTGCATATAGGATCTTTCG
66 ATATAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCATATAGGATCTTTCG
* * * *
112934479 TCGCTTTGGTTCTTTGATGTGGAAAAAAATGATTTGGAAAACCATCATCTGCCAGGTAATGGCTG
131 TCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGGCTG
*
112934544 CAAGTTGATATTCTATTATGTCAATTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGTGAC
196 CAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGTGAC
112934609 TATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGACA
261 TATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGACA
*
112934674 TCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCGAATCAAGAGAATATGAAGCTGTCACATG
326 TCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCACATG
*
112934739 AGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATTTGCTCACTGAGA
391 AGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATGTGCTCACTGAGA
**
112934804 TATTTTTAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCAGAACAT
456 TATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCAGAACAT
* *
112934869 CCTTGCAAATTCTCTAACTGAAGCTGACCATAATATAGAACGTAAACCAGAGAGGCTCGAGCTAA
521 CCTTGCAAACTCTCTAACTGAAGCTGACCATAATATAGAAAGTAAACCAGAGAGGCTCGAGCTAA
112934934 AAGACATCACAAATATAGAGGTAAGGGTGCAAAACATAAGGA
586 AAGACATCACAAATATAGAGGTAAGGGTGCAAAACATAAGGA
*
112934976 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATTAGGGCATATATATATATA
1 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATCAGGGC----A-ATATATA
*
112935041 TATATATATGTAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCGTATAGGA
61 TATATATA--TAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCATATAGGA
*
112935106 TCTTTCGTCACTGTGGTTTTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTA
124 TCTTTCGTCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTA
* *
112935171 ATGCCTGCAAGTTGATATTCTATTATGTCAACTTGCAGAAATAATTTGGTCTCTACATTCTTAAA
189 ATGGCTGCAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAA
112935236 CTGTGACTATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATT
254 CTGTGACTATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATT
*
112935301 TTGGACATCAATATCCGGGTGAAGGCAGCAGTGATGCTAGAGCAAATCAAGAGAATATGAAGCTG
319 TTGGACATCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTG
* * *
112935366 TCATATGAGAACACCTCTCCTGTCCAAGGGTATACAACATTTATTGACGCAATGTTAATGTGCTC
384 TCACATGAGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATGTGCTC
112935431 ACTGAGATATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTC
449 ACTGAGATATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTC
* *
112935496 AGAACATCCTTGCAAACTCTCTAACTGAAGCTGACCATAATGTAGAAAGTAAATCAGAGAGGCTC
514 AGAACATCCTTGCAAACTCTCTAACTGAAGCTGACCATAATATAGAAAGTAAACCAGAGAGGCTC
*
112935561 GAGCTAAAAGACATCACAAATATAGAGGTAAGGGTGCAGAACATAAGGA
579 GAGCTAAAAGACATCACAAATATAGAGGTAAGGGTGCAAAACATAAGGA
*
112935610 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATTAGGGC-ATATATATATAT
1 ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATCAGGGCAATATATATATAT
* *
112935674 ATGA-AATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCGTGTAGGATCTTTC
66 AT-ATAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCATATAGGATCTTTC
*
112935738 GTCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGACT
130 GTCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGGCT
112935803 GCAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACT-TGG
195 GCAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGT-G
*
112935867 AGTATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGA
259 ACTATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGA
112935932 CATCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCACA
324 CATCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCACA
* *
112935997 TGAGAACACCTCTCTTGTCCAAAGGTATACAACATTTATGGACGCAATGCTAATGTGCTCACTGA
389 TGAGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATGTGCTCACTGA
* *
112936062 GATATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCATATTTTGAGAAC
454 GATATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCAGAAC
* * * * *
112936127 ATCCTTTCAAACTCTCTAGCCGAAGCTGACCAT-A-A-AGAAAGTAACCCAGAGAGGCTCGGGCT
519 ATCCTTGCAAACTCTCTAACTGAAGCTGACCATAATATAGAAAGTAAACCAGAGAGGCTCGAGCT
* * *
112936189 AAGAGACATCACAAATATGGAGGTAACGGTGCAAAACA-AGAGGA
584 AAAAGACATCACAAATATAGAGGTAAGGGTGCAAAACATA-AGGA
112936233 ATAACTTGGAAGAAG
1 ATAACTTGG-AGAAG
112936248 AGACCAAGAA
Statistics
Matches: 1807, Mismatches: 79, Indels: 28
0.94 0.04 0.01
Matches are distributed among these distances:
622 1 0.00
623 71 0.04
624 5 0.00
625 2 0.00
626 1060 0.59
628 65 0.04
629 1 0.00
632 14 0.01
634 588 0.33
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (627 bp):
ATAACTTGGAGAAGGCTCGTGAAAAGAAGAAATTGGAAGAAGAGATCAGGGCAATATATATATAT
ATATAATTGAAGTTGCTTATTTTTTTGGATCAAATCTGATTCTCTTCTGCATATAGGATCTTTCG
TCACTGTGGTTCTTTGATGTGGAAAAATATGATTTGGAAAACCGTCATCTGCCAGGTAATGGCTG
CAAGTTGATATTCTATTATGTCAACTTACAGAAATAATTTGGTCTCTACATTCTTAAACTGTGAC
TATAATAATCTTAATGGTCTTATACTTGTCAATTGTCAACATTAATATCCTTTAGATTTTGGACA
TCAATATCCGGGTGAAGGCAGCAGTGATGCCAGAGCAAATCAAGAGAATATGAAGCTGTCACATG
AGAACACCTCTCCTGTCCAAGGGTATACAACATTTATGGACGCAATGCTAATGTGCTCACTGAGA
TATTTCAAAAGCACCCTCATACTGATAACAAGTTTTTTATTTAGGCATGCAGATTTTCAGAACAT
CCTTGCAAACTCTCTAACTGAAGCTGACCATAATATAGAAAGTAAACCAGAGAGGCTCGAGCTAA
AAGACATCACAAATATAGAGGTAAGGGTGCAAAACATAAGGA
Found at i:112944361 original size:21 final size:21
Alignment explanation
Indices: 112944337--112944391 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
112944327 CCTACAGCCA
* *
112944337 CTGTTATTCCTGTTTTGGAAC
1 CTGTTTTTCCTATTTTGGAAC
112944358 CTGTTTTTCCTATTTTGGAAC
1 CTGTTTTTCCTATTTTGGAAC
112944379 CTGTTTTTCCTAT
1 CTGTTTTTCCTAT
112944392 CTCCACTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.20, G:0.15, T:0.53
Consensus pattern (21 bp):
CTGTTTTTCCTATTTTGGAAC
Found at i:112948223 original size:81 final size:81
Alignment explanation
Indices: 112948134--112948294 Score: 322
Period size: 81 Copynumber: 2.0 Consensus size: 81
112948124 TCACAAATTA
112948134 ATGTAATAATAAAATTACATATTGTTTCTTTAAATTTTTATTTATTTATTGCCCTTCCTAAAACA
1 ATGTAATAATAAAATTACATATTGTTTCTTTAAATTTTTATTTATTTATTGCCCTTCCTAAAACA
112948199 ATTTCTTGGTTTCACT
66 ATTTCTTGGTTTCACT
112948215 ATGTAATAATAAAATTACATATTGTTTCTTTAAATTTTTATTTATTTATTGCCCTTCCTAAAACA
1 ATGTAATAATAAAATTACATATTGTTTCTTTAAATTTTTATTTATTTATTGCCCTTCCTAAAACA
112948280 ATTTCTTGGTTTCAC
66 ATTTCTTGGTTTCAC
112948295 CCTCTACCAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (81 bp):
ATGTAATAATAAAATTACATATTGTTTCTTTAAATTTTTATTTATTTATTGCCCTTCCTAAAACA
ATTTCTTGGTTTCACT
Found at i:112950255 original size:24 final size:24
Alignment explanation
Indices: 112950223--112950357 Score: 160
Period size: 24 Copynumber: 5.8 Consensus size: 24
112950213 GCTAAATCGC
112950223 TTAGTGACCATCCATCCATGCATA
1 TTAGTGACCATCCATCCATGCATA
112950247 TTAGTGACCATCCATCCAT-C---
1 TTAGTGACCATCCATCCATGCATA
*
112950267 -CA-T--CCATCCATCCATGCATA
1 TTAGTGACCATCCATCCATGCATA
*
112950287 TTAGTGACCATCCATTCATGCATA
1 TTAGTGACCATCCATCCATGCATA
112950311 TTAGTGACCATCCATCCATCCATGCATA
1 TTAGTG---A-CCATCCATCCATGCATA
112950339 TTAGTGACCATCCATCCAT
1 TTAGTGACCATCCATCCAT
112950358 CCATCGATGC
Statistics
Matches: 95, Mismatches: 4, Indels: 24
0.77 0.03 0.20
Matches are distributed among these distances:
16 12 0.13
17 1 0.01
18 1 0.01
19 1 0.01
21 1 0.01
22 1 0.01
23 1 0.01
24 53 0.56
25 1 0.01
27 1 0.01
28 22 0.23
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (24 bp):
TTAGTGACCATCCATCCATGCATA
Found at i:112950263 original size:4 final size:4
Alignment explanation
Indices: 112950254--112950281 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
112950244 ATATTAGTGA
112950254 CCAT CCAT CCAT CCAT CCAT CCAT CCAT
1 CCAT CCAT CCAT CCAT CCAT CCAT CCAT
112950282 GCATATTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25
Consensus pattern (4 bp):
CCAT
Found at i:112950271 original size:32 final size:32
Alignment explanation
Indices: 112950230--112950413 Score: 204
Period size: 32 Copynumber: 5.9 Consensus size: 32
112950220 CGCTTAGTGA
112950230 CCATCCATCCATGCATATTAGTGACCATCCAT
1 CCATCCATCCATGCATATTAGTGACCATCCAT
* ** **
112950262 CCATCCATCCATCCAT-CCA-TG--CATATTAGT
1 CCATCCATCCATGCATATTAGTGACCAT-CCA-T
*
112950292 GACCATCCATTCATGCATATTAGTGACCAT----
1 --CCATCCATCCATGCATATTAGTGACCATCCAT
112950322 CCATCCATCCATGCATATTAGTGACCATCCAT
1 CCATCCATCCATGCATATTAGTGACCATCCAT
* *
112950354 CCATCCATCGATGCATATTAGTGACCATCCTT
1 CCATCCATCCATGCATATTAGTGACCATCCAT
112950386 CCATCCATCCATGCATATTAGTGACCAT
1 CCATCCATCCATGCATATTAGTGACCAT
112950414 TCAACCATGC
Statistics
Matches: 127, Mismatches: 13, Indels: 24
0.77 0.08 0.15
Matches are distributed among these distances:
28 30 0.24
29 1 0.01
30 3 0.02
31 1 0.01
32 86 0.68
33 1 0.01
34 2 0.02
36 3 0.02
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (32 bp):
CCATCCATCCATGCATATTAGTGACCATCCAT
Found at i:112950325 original size:28 final size:28
Alignment explanation
Indices: 112950266--112950413 Score: 196
Period size: 28 Copynumber: 5.1 Consensus size: 28
112950256 ATCCATCCAT
112950266 CCATCCATCCATCCATGCATATTAGTGA
1 CCATCCATCCATCCATGCATATTAGTGA
112950294 CCATCCAT---T-CATGCATATTAGTGA
1 CCATCCATCCATCCATGCATATTAGTGA
112950318 CCATCCATCCATCCATGCATATTAGTGA
1 CCATCCATCCATCCATGCATATTAGTGA
112950346 CCATCCATCCATCCATCGATGCATATTAGTGA
1 CCATCCATCCAT-C--C-ATGCATATTAGTGA
112950378 CCATCCTTCCATCCATCCATGCATATTAGTGA
1 CCA----TCCATCCATCCATGCATATTAGTGA
112950410 CCAT
1 CCAT
112950414 TCAACCATGC
Statistics
Matches: 108, Mismatches: 0, Indels: 24
0.82 0.00 0.18
Matches are distributed among these distances:
24 23 0.21
25 1 0.01
27 1 0.01
28 36 0.33
29 1 0.01
31 1 0.01
32 34 0.31
33 1 0.01
35 1 0.01
36 9 0.08
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.30
Consensus pattern (28 bp):
CCATCCATCCATCCATGCATATTAGTGA
Found at i:112954960 original size:17 final size:17
Alignment explanation
Indices: 112954940--112954997 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
112954930 AAAAAAAATA
112954940 AAAAATTAAAATATTTT
1 AAAAATTAAAATATTTT
112954957 AAAAATTAAAAT-TTGTT
1 AAAAATTAAAATATT-TT
*
112954974 AGAAAATGTAAAA-ATTAT
1 A-AAAAT-TAAAATATTTT
112954992 AAAAAT
1 AAAAAT
112954998 GTATTTAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
16 2 0.06
17 20 0.56
18 7 0.19
19 7 0.19
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
AAAAATTAAAATATTTT
Found at i:112955311 original size:38 final size:39
Alignment explanation
Indices: 112955260--112955340 Score: 155
Period size: 38 Copynumber: 2.1 Consensus size: 39
112955250 ATAGTCTGTC
112955260 AGTTAAACTCTGTTTACTTGTTTCAATCAAACACTGA-T
1 AGTTAAACTCTGTTTACTTGTTTCAATCAAACACTGATT
112955298 AGTTAAACTCTGTTTACTTGTTTCAATCAAACACTGATT
1 AGTTAAACTCTGTTTACTTGTTTCAATCAAACACTGATT
112955337 AGTT
1 AGTT
112955341 TAGATTATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 37 0.88
39 5 0.12
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (39 bp):
AGTTAAACTCTGTTTACTTGTTTCAATCAAACACTGATT
Found at i:112960624 original size:11 final size:11
Alignment explanation
Indices: 112960610--112960656 Score: 69
Period size: 11 Copynumber: 4.4 Consensus size: 11
112960600 ATACCCATTG
112960610 CTTGCCCATAC
1 CTTGCCCATAC
112960621 CTTGCCCATAC
1 CTTGCCCATAC
*
112960632 CTTTCCCATAC
1 CTTGCCCATAC
*
112960643 C-TACCCATAC
1 CTTGCCCATAC
112960653 CTTG
1 CTTG
112960657 GAAATGTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.19, C:0.45, G:0.06, T:0.30
Consensus pattern (11 bp):
CTTGCCCATAC
Found at i:112960628 original size:22 final size:22
Alignment explanation
Indices: 112960610--112960656 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
112960600 ATACCCATTG
112960610 CTTGCCCATACCTTGCCCATAC
1 CTTGCCCATACCTTGCCCATAC
* *
112960632 CTTTCCCATACC-TACCCATAC
1 CTTGCCCATACCTTGCCCATAC
112960653 CTTG
1 CTTG
112960657 GAAATGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.19, C:0.45, G:0.06, T:0.30
Consensus pattern (22 bp):
CTTGCCCATACCTTGCCCATAC
Found at i:112961215 original size:18 final size:18
Alignment explanation
Indices: 112961192--112961266 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
112961182 ATCGTTTACG
*
112961192 GTACTATTTACGTATACA
1 GTACTATTCACGTATACA
* *
112961210 GTACTATTCATGTATACG
1 GTACTATTCACGTATACA
* * *
112961228 GTACTATTTACATATACG
1 GTACTATTCACGTATACA
*
112961246 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
112961264 GTA
1 GTA
112961267 GTTGAGATTG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:112961235 original size:36 final size:36
Alignment explanation
Indices: 112961188--112961262 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
112961178 TACGATCGTT
* *
112961188 TACGGTACTATTTACGTATACAGTACTATTCATGTA
1 TACGGTACTATTTACATATACAGTACTATTCACGTA
* *
112961224 TACGGTACTATTTACATATACGGTACTGTTCACGTA
1 TACGGTACTATTTACATATACAGTACTATTCACGTA
112961260 TAC
1 TAC
112961263 AGTAGTTGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (36 bp):
TACGGTACTATTTACATATACAGTACTATTCACGTA
Found at i:112965313 original size:11 final size:11
Alignment explanation
Indices: 112965297--112965351 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
112965287 TATTAGAATA
*
112965297 TACCCATTCCT
1 TACCCATACCT
112965308 TACCCATACCT
1 TACCCATACCT
*
112965319 TGCCCATACCT
1 TACCCATACCT
*
112965330 TTCCCATACC-
1 TACCCATACCT
112965340 TACCCATACCT
1 TACCCATACCT
112965351 T
1 T
112965352 GGAAAGGTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.23
11 30 0.77
ACGTcount: A:0.22, C:0.45, G:0.02, T:0.31
Consensus pattern (11 bp):
TACCCATACCT
Found at i:112970045 original size:35 final size:35
Alignment explanation
Indices: 112970006--112970077 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
112969996 CATCTCCGGA
*
112970006 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
112970041 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
112970076 GC
1 GC
112970078 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:112975272 original size:35 final size:35
Alignment explanation
Indices: 112975233--112975304 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
112975223 CATCTCCGGA
*
112975233 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
112975268 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
112975303 GC
1 GC
112975305 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:112975844 original size:17 final size:17
Alignment explanation
Indices: 112975822--112975854 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
112975812 CGATAAAAAT
112975822 ATAATTT-TATTATTTAA
1 ATAATTTATA-TATTTAA
112975839 ATAATTTATATATTTA
1 ATAATTTATATATTTA
112975855 TAATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATAATTTATATATTTAA
Found at i:112980072 original size:12 final size:12
Alignment explanation
Indices: 112980048--112980102 Score: 58
Period size: 12 Copynumber: 4.3 Consensus size: 12
112980038 AAATTGATTG
112980048 GATTAAA-AATC
1 GATTAAAGAATC
112980059 GATTAAAGAATC
1 GATTAAAGAATC
112980071 GATTAAATTGGAAATC
1 GATTAAA---G-AATC
*
112980087 GATTAAAGAATT
1 GATTAAAGAATC
112980099 GATT
1 GATT
112980103 TAGAGAGAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
11 7 0.18
12 18 0.47
13 1 0.03
15 1 0.03
16 11 0.29
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.31
Consensus pattern (12 bp):
GATTAAAGAATC
Found at i:112980074 original size:28 final size:28
Alignment explanation
Indices: 112980049--112980102 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
112980039 AATTGATTGG
112980049 ATTAAAAATCGATTAAAGAATCGATTAA
1 ATTAAAAATCGATTAAAGAATCGATTAA
** *
112980077 ATTGGAAATCGATTAAAGAATTGATT
1 ATTAAAAATCGATTAAAGAATCGATT
112980103 TAGAGAGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (28 bp):
ATTAAAAATCGATTAAAGAATCGATTAA
Found at i:112980434 original size:21 final size:22
Alignment explanation
Indices: 112980394--112980436 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
112980384 CAACCCATAT
*
112980394 TATTATTTTTCAAAATTATTTA
1 TATTATTTTTCAAAACTATTTA
*
112980416 TATTATTTTT-AATACTATTTA
1 TATTATTTTTCAAAACTATTTA
112980437 ATAATTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTATTTTTCAAAACTATTTA
Found at i:112980784 original size:2 final size:2
Alignment explanation
Indices: 112980772--112980815 Score: 79
Period size: 2 Copynumber: 21.5 Consensus size: 2
112980762 ATAGGTCTAA
112980772 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112980815 A
1 A
112980816 AAATTGATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:112985392 original size:19 final size:19
Alignment explanation
Indices: 112985356--112985393 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
112985346 TCTGAGCGTA
*
112985356 GCCTTTAGCTACCAATCTT
1 GCCTTTAGCGACCAATCTT
112985375 GCCTTATAGCGACC-ATCTT
1 GCCTT-TAGCGACCAATCTT
112985394 TCTTGCTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (19 bp):
GCCTTTAGCGACCAATCTT
Found at i:112985922 original size:26 final size:26
Alignment explanation
Indices: 112985877--112985986 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
112985867 TGATACAAAT
112985877 TGATAATGGCTGTTAGGTAAATGTTCCA
1 TGATAATGG--GTTAGGTAAATGTTCCA
*
112985905 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
112985931 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
112985957 TGATAATTGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
112985983 TGAT
1 TGAT
112985987 GGGCATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 70 0.89
28 9 0.11
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:112987763 original size:21 final size:21
Alignment explanation
Indices: 112987720--112987766 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
112987710 TCCCCACATG
112987720 GAGTGTAGGGCTGGTACGGGTT
1 GAGTGTAGGGCTGGTA-GGGTT
*
112987742 GAGTGTAGTGGTTGGT-GGGTT
1 GAGTGTAG-GGCTGGTAGGGTT
112987763 GAGT
1 GAGT
112987767 AGTCTCCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 8 0.35
23 6 0.26
ACGTcount: A:0.13, C:0.04, G:0.51, T:0.32
Consensus pattern (21 bp):
GAGTGTAGGGCTGGTAGGGTT
Found at i:112989165 original size:56 final size:57
Alignment explanation
Indices: 112989079--112989194 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 57
112989069 TTGCCCTCGG
112989079 ATCTAACTTTGACTTCTTTACATGGTAATATGCAGTGG-TCCAAACACATGTAAGGA
1 ATCTAACTTTGACTTCTTTACATGGTAATATGCAGTGGATCCAAACACATGTAAGGA
112989135 ATCTAACTTTGACTTCTTTACATGGTAATATGCAGTGGATCCAAACACATGTAAGGA
1 ATCTAACTTTGACTTCTTTACATGGTAATATGCAGTGGATCCAAACACATGTAAGGA
112989192 ATC
1 ATC
112989195 ATAATCTGTA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 38 0.64
57 21 0.36
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (57 bp):
ATCTAACTTTGACTTCTTTACATGGTAATATGCAGTGGATCCAAACACATGTAAGGA
Found at i:112993321 original size:24 final size:24
Alignment explanation
Indices: 112993289--112993336 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
112993279 ATCGGCAAAA
112993289 GCTCGGAAAACTTTCAAAATTTTT
1 GCTCGGAAAACTTTCAAAATTTTT
112993313 GCTCGGAAAACTTTCAAAATTTTT
1 GCTCGGAAAACTTTCAAAATTTTT
112993337 CTTTCTTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (24 bp):
GCTCGGAAAACTTTCAAAATTTTT
Found at i:112993419 original size:2 final size:2
Alignment explanation
Indices: 112993414--112993446 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
112993404 CCTATCATGT
112993414 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112993447 CTCGAAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112994152 original size:129 final size:128
Alignment explanation
Indices: 112993920--112994247 Score: 462
Period size: 129 Copynumber: 2.6 Consensus size: 128
112993910 GAAAAGCCAA
* * * * * * *
112993920 AACCCAGCACGGTAGGGC-CAATTTCTCGAATTTCCAAACATTGAACATTGCCTCGCTTT-AGCA
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTCGTTTTAAGAA
** *
112993983 TTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTCGAACAAACGGGAAATTGC
66 TTTTCAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTCGAACAAACGGAAAATTGC
*
112994046 AACCCAGCATGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTCGTTTTAAGGA
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTCGTTTTAA-GA
* * * *
112994111 ATTTTCAAAGCATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAATGGAAAATTGC
65 ATTTTCAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTCGAACAAACGGAAAATTGC
* *
112994175 AACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCAAACATTGCCTTCATTTTAAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCC-TCGTTTT-AAG
112994240 AATTTTCA
64 AATTTTCA
112994248 GACGAATAAT
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
126 16 0.09
127 36 0.20
128 1 0.01
129 109 0.61
130 15 0.08
131 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (128 bp):
AACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTCGTTTTAAGAA
TTTTCAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTCGAACAAACGGAAAATTGC
Found at i:112996201 original size:26 final size:26
Alignment explanation
Indices: 112996164--112996247 Score: 134
Period size: 26 Copynumber: 3.2 Consensus size: 26
112996154 TGATACAAAT
*
112996164 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
112996190 TGATAATGGGTTAGGTAAATG-TCTCA
1 TGATAATGGGTTAGGTAAATGTTC-CA
*
112996216 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
112996242 TGATAA
1 TGATAA
112996248 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.04
26 51 0.94
27 1 0.02
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:112999542 original size:25 final size:27
Alignment explanation
Indices: 112999505--112999557 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
112999495 TCAAACATGC
112999505 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
112999531 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
112999557 A
1 A
112999558 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:113001080 original size:26 final size:26
Alignment explanation
Indices: 113001044--113001153 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
113001034 CATGAATTTC
113001044 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAAACCA
*
113001070 TTATCATGAAATATTTACCT-AACCTA
1 TTATCATGAAACATTTACCTAAACC-A
* *
113001096 TTATCATGAAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAAACCA
* *
113001122 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
113001148 TTATCA
1 TTATCA
113001154 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
25 4 0.05
26 70 0.91
27 3 0.04
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAAACCA
Found at i:113001123 original size:52 final size:52
Alignment explanation
Indices: 113001044--113001153 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
113001034 CATGAATTTC
* *
113001044 TTATCATGAAACATTTACCTAAACCATTATCATGAAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
* * *
113001096 TTATCATGAAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
113001148 TTATCA
1 TTATCA
113001154 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
Found at i:113001894 original size:25 final size:23
Alignment explanation
Indices: 113001857--113001907 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
113001847 TTGGACAGTA
* *
113001857 TTTATTTTGTTTTATTTTTTGGAT
1 TTTATTTTATTTTATATTTTGG-T
*
113001881 TTTATATTTATTTTGTATTTTGGT
1 TTTAT-TTTATTTTATATTTTGGT
113001905 TTT
1 TTT
113001908 GACGTGGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.75
Consensus pattern (23 bp):
TTTATTTTATTTTATATTTTGGT
Found at i:113001947 original size:2 final size:2
Alignment explanation
Indices: 113001940--113001972 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
113001930 GCGGTTTACA
113001940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
113001973 CTTAGTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:113005015 original size:18 final size:18
Alignment explanation
Indices: 113004990--113005082 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
113004980 ACCGTTTACG
113004990 GTACTATTCACGTATACA
1 GTACTATTCACGTATACA
*
113005008 GCACTATTCACGTATACA
1 GTACTATTCACGTATACA
* *
113005026 GTACTATTTACGTATACG
1 GTACTATTCACGTATACA
* * *
113005044 GTACTATTTACGAATACG
1 GTACTATTCACGTATACA
*
113005062 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
113005080 GTA
1 GTA
113005083 GTTGGGATTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:113009753 original size:15 final size:15
Alignment explanation
Indices: 113009717--113009747 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
113009707 AATCTCAATC
113009717 TAAGTGAGAGAGAGG
1 TAAGTGAGAGAGAGG
113009732 TAAGTGAGAGAGAGG
1 TAAGTGAGAGAGAGG
113009747 T
1 T
113009748 GGGTGACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.45, T:0.16
Consensus pattern (15 bp):
TAAGTGAGAGAGAGG
Found at i:113012500 original size:24 final size:24
Alignment explanation
Indices: 113012450--113012500 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
113012440 TTAGTATTTG
* *
113012450 TTAGTATAATATATTTATCATTTA
1 TTAGCATAATATATTTATCATTAA
113012474 TTAGCATAATATATTTGA-CATTAA
1 TTAGCATAATATATTT-ATCATTAA
113012498 TTA
1 TTA
113012501 TAATTAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.49
Consensus pattern (24 bp):
TTAGCATAATATATTTATCATTAA
Found at i:113014405 original size:28 final size:28
Alignment explanation
Indices: 113014361--113014428 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
113014351 ATAAAAATTT
* *
113014361 CACTAAGTGTGCGAGTTTGGTTAACGAG
1 CACTAAGTGTGCAAGTTTGATTAACGAG
*
113014389 CACTAAGTGTGCAAGTTTGATTATCGAG
1 CACTAAGTGTGCAAGTTTGATTAACGAG
*
113014417 CACTAGGTGTGC
1 CACTAAGTGTGC
113014429 GAAGGAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCAAGTTTGATTAACGAG
Found at i:113015332 original size:2 final size:2
Alignment explanation
Indices: 113015325--113015366 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
113015315 TGCATAACTG
113015325 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113015367 GTTCGGCAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113016814 original size:29 final size:29
Alignment explanation
Indices: 113016757--113016815 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
113016747 TCGTGGAAAA
*
113016757 GGTGAAGAACTTGTTCGTTGAGAGCTCGT
1 GGTGAAGAACTTGTTCGTTGAGAACTCGT
*
113016786 GGTGAAGAACTTGTTCGTTGAGAATTCGT
1 GGTGAAGAACTTGTTCGTTGAGAACTCGT
113016815 G
1 G
113016816 TTAAGGTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.12, G:0.34, T:0.32
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAACTCGT
Found at i:113016957 original size:24 final size:24
Alignment explanation
Indices: 113016900--113016951 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
113016890 TTTCTAAAAG
* * *
113016900 ATTTAGTATTTATCAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
113016924 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
113016948 ATTT
1 ATTT
113016952 GACATTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:113016962 original size:24 final size:24
Alignment explanation
Indices: 113016917--113016963 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
113016907 ATTTATCAGT
*
113016917 ATAATATATTTAGCATTTATTAGC
1 ATAATATATTTAGCATTGATTAGC
113016941 ATAATATATTT-GACATTGATTAG
1 ATAATATATTTAG-CATTGATTAG
113016964 AATTAGGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAGC
Found at i:113017800 original size:109 final size:109
Alignment explanation
Indices: 113017512--113017839 Score: 536
Period size: 110 Copynumber: 3.0 Consensus size: 109
113017502 TTTTTAATAA
* *
113017512 AAATGTTGAGCACCAAACGCACGATACGTATTAACAAGCTCAATGGTCTAAAGACTTAGACCGTA
1 AAATGTTGAGCACCAAACGCACGATACATATTAGCAAGCTCAATGGTCTAAAGACTTAGACCGTA
*
113017577 AGCAAGACTCCAAAATGAAAAGTAATTGAAACGCATTTTCTAAT
66 AGCATGACTCCAAAATGAAAAGTAATTGAAACGCATTTTCTAAT
113017621 AAATGTTGAGACACCAAACGCACGATACATATTAAG-AAGCTCAATGGTCTAAAGACTTAGACCG
1 AAATGTTGAG-CACCAAACGCACGATACATATT-AGCAAGCTCAATGGTCTAAAGACTTAGACCG
*
113017685 TAAGCATGACTCCAAAATGAAAAGTAATTGAAACGCGTTTTCTAAT
64 TAAGCATGACTCCAAAATGAAAAGTAATTGAAACGCATTTTCTAAT
113017731 AAATGTTGAGCACCAAACGCACGATACATATTAGCAAGCTCAATGGTCTAAAGACTTAGACCGTA
1 AAATGTTGAGCACCAAACGCACGATACATATTAGCAAGCTCAATGGTCTAAAGACTTAGACCGTA
*
113017796 AGCATGACTCCAGAAA-G-AAAGATATAGTTGAAATGCATTTTCTA
66 AGCATGACTCCA-AAATGAAAAG-TA-A-TTGAAACGCATTTTCTA
113017840 GTACCACTAT
Statistics
Matches: 206, Mismatches: 6, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
108 6 0.03
109 77 0.37
110 107 0.52
111 16 0.08
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (109 bp):
AAATGTTGAGCACCAAACGCACGATACATATTAGCAAGCTCAATGGTCTAAAGACTTAGACCGTA
AGCATGACTCCAAAATGAAAAGTAATTGAAACGCATTTTCTAAT
Found at i:113032260 original size:13 final size:12
Alignment explanation
Indices: 113032242--113032286 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
113032232 TGCATTAAAA
113032242 AATATATATACAT
1 AATATATATA-AT
113032255 AATATATATAA-
1 AATATATATAAT
*
113032266 AATACATATAAT
1 AATATATATAAT
113032278 -ATATATATA
1 AATATATATA
113032287 CGTATTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 18 0.62
12 1 0.03
13 10 0.34
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATATATAAT
Found at i:113033013 original size:10 final size:10
Alignment explanation
Indices: 113032982--113033016 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
113032972 ATATAAAAAG
113032982 AAAGAAAGAA
1 AAAGAAAGAA
* *
113032992 AAAAAAACAA
1 AAAGAAAGAA
113033002 AAAGAAAGAA
1 AAAGAAAGAA
113033012 AAAGA
1 AAAGA
113033017 TTCGAAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Done.