Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 41 of 378
Found at i:10141528 original size:29 final size:29
Alignment explanation
Indices: 10141469--10141528 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
10141459 ACAACATGTT
* *
10141469 AACATAAATGACTAAGACGTAACATTTCA
1 AACATAAATGACTAAAACGTAACATTACA
* *
10141498 AACATAAGTGACTAAAATGTAAC-TTAACA
1 AACATAAATGACTAAAACGTAACATT-ACA
10141527 AA
1 AA
10141529 AAACAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (29 bp):
AACATAAATGACTAAAACGTAACATTACA
Found at i:10146633 original size:1 final size:1
Alignment explanation
Indices: 10146627--10146651 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
10146617 TGAGTACCTC
10146627 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
10146652 AATCCTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:10148853 original size:21 final size:21
Alignment explanation
Indices: 10148829--10148875 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
10148819 CACGTACTCT
*
10148829 GTAAAATA-TTTTAAAAGATTG
1 GTAAAATATTTTTAAAA-ATTA
10148850 GTAAAATATTTTTAAAAATTA
1 GTAAAATATTTTTAAAAATTA
10148871 GTAAA
1 GTAAA
10148876 TAACAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (21 bp):
GTAAAATATTTTTAAAAATTA
Found at i:10152042 original size:10 final size:10
Alignment explanation
Indices: 10152029--10152063 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
10152019 AAAAATCATT
10152029 AAAAAATTTA
1 AAAAAATTTA
10152039 AAAAAATTTA
1 AAAAAATTTA
*
10152049 AAAAAGGTTTA
1 AAAAA-ATTTA
10152060 AAAA
1 AAAA
10152064 TAAATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (10 bp):
AAAAAATTTA
Found at i:10152049 original size:19 final size:19
Alignment explanation
Indices: 10152009--10152066 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
10151999 TACGAATATG
* *
10152009 TAAAAAATATAAAAATCAT
1 TAAAAAATTTAAAAATAAT
10152028 TAAAAAATTTAAAAA-AATT
1 TAAAAAATTTAAAAATAA-T
10152047 TAAAAAAGGTTTAAAAATAA
1 TAAAAAA--TTTAAAAATAA
10152067 ATTTTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 22 0.67
21 8 0.24
22 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (19 bp):
TAAAAAATTTAAAAATAAT
Found at i:10152541 original size:22 final size:21
Alignment explanation
Indices: 10152500--10152541 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10152490 GTACTAAATT
*
10152500 AAAATAAAAAATTTAAATACC
1 AAAATAAAAAATTGAAATACC
10152521 AAAATAGAAAAA-TGAATATAC
1 AAAATA-AAAAATTGAA-ATAC
10152542 TCCAAGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.21
Consensus pattern (21 bp):
AAAATAAAAAATTGAAATACC
Found at i:10153768 original size:14 final size:13
Alignment explanation
Indices: 10153700--10153769 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 13
10153690 CTCTTATACC
10153700 TCTTTTTTT-TTT
1 TCTTTTTTTCTTT
**
10153712 TCTTTTTTTCCCCTCC
1 TCTTTTTTT---CTTT
*
10153728 TCTTTCTTTCTTT
1 TCTTTTTTTCTTT
*
10153741 T-TTTTTTTCATT
1 TCTTTTTTTCTTT
10153753 TCTTTTTATTCTTT
1 TCTTTTT-TTCTTT
10153767 TCT
1 TCT
10153770 AAGCATGCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
12 19 0.43
13 8 0.18
14 8 0.18
16 9 0.20
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:10156001 original size:18 final size:18
Alignment explanation
Indices: 10155977--10156128 Score: 171
Period size: 18 Copynumber: 8.4 Consensus size: 18
10155967 TATCAATATC
10155977 ATTCAGTAAC-GATCAATT
1 ATTCAGTAACAG-TCAATT
* *
10155995 GTTCAGTAACAGTCAGTT
1 ATTCAGTAACAGTCAATT
* *
10156013 ATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
10156031 ATTCAGTAACAGTCAATT
1 ATTCAGTAACAGTCAATT
* * *
10156049 ATTCAGTAATAATCAGTT
1 ATTCAGTAACAGTCAATT
* *
10156067 ATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCAATT
*
10156085 ATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
* * *
10156103 TTTCAGTAGCAGTCAGTT
1 ATTCAGTAACAGTCAATT
10156121 ATTCAGTA
1 ATTCAGTA
10156129 CCTTTATTTA
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
18 115 0.99
19 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (18 bp):
ATTCAGTAACAGTCAATT
Found at i:10156021 original size:36 final size:36
Alignment explanation
Indices: 10155977--10156128 Score: 189
Period size: 36 Copynumber: 4.2 Consensus size: 36
10155967 TATCAATATC
* *
10155977 ATTCAGTAAC-GATCAATTGTTCAGTAACAGTCAGTT
1 ATTCAGTAACAG-TCATTTATTCAGTAACAGTCAGTT
* *
10156013 ATTTAGTAACAGTCATTTATTCAGTAACAGTCAATT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* * * * *
10156049 ATTCAGTAATAATCAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* *
10156085 ATTCAGTAACAGTCATTTTTTCAGTAGCAGTCAGTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
10156121 ATTCAGTA
1 ATTCAGTA
10156129 CCTTTATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
36 97 0.99
37 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (36 bp):
ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
Found at i:10156054 original size:54 final size:54
Alignment explanation
Indices: 10155977--10156128 Score: 216
Period size: 54 Copynumber: 2.8 Consensus size: 54
10155967 TATCAATATC
* * *
10155977 ATTCAGTAAC-GATCAATTGTTCAGTAACAGTCAGTTATTTAGTAACAGTCATTT
1 ATTCAGTAACAG-TCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
* *
10156031 ATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
* * *
10156085 ATTCAGTAACAGTCATTTTTTCAGTAGCAGTCAGTTATTCAGTA
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTA
10156129 CCTTTATTTA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 86 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (54 bp):
ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
Found at i:10157140 original size:13 final size:13
Alignment explanation
Indices: 10157124--10157166 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
10157114 ACTTTATATA
10157124 AATATATTATAAT
1 AATATATTATAAT
10157137 AATATAATT-TAAT
1 AATAT-ATTATAAT
10157150 AATATACTTAT-AT
1 AATATA-TTATAAT
10157163 AATA
1 AATA
10157167 AATAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 22 0.81
14 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
AATATATTATAAT
Found at i:10161664 original size:55 final size:52
Alignment explanation
Indices: 10161577--10161831 Score: 207
Period size: 55 Copynumber: 4.8 Consensus size: 52
10161567 ATTAGGGTTT
*
10161577 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTCGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATT-GTAA-GTTTCTAAGGC
* * * * *
10161632 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTG-TAAGTT--TCTAAGGC
* * * *
10161687 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATT-GTAAGTTTC-TAAGGC
* * * *
10161740 AAGGATACCATGTAAGGCCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGTAAGTTTCTAAGGC
* * * *
10161789 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGTAAG
10161832 GTACCCGTGT
Statistics
Matches: 164, Mismatches: 27, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
49 37 0.23
52 7 0.04
53 37 0.23
54 12 0.07
55 66 0.40
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGTAAGTTTCTAAGGC
Found at i:10161783 original size:108 final size:110
Alignment explanation
Indices: 10161584--10161784 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
10161574 TTTAAGGATA
*
10161584 CCATGTAAGACCATGCCAAGGCATGGAAATTCGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTCGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
10161649 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
10161694 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTCGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* * *
10161756 GCCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
10161785 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 6 0.08
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTCGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:10168886 original size:17 final size:18
Alignment explanation
Indices: 10168854--10168887 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10168844 TATGGTTTGT
*
10168854 CCGTGTGGGCCTACACGC
1 CCGTGTGGGCCCACACGC
10168872 CCGTGT-GGCCCACACG
1 CCGTGTGGGCCCACACG
10168888 GCCTAAATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.41, G:0.32, T:0.15
Consensus pattern (18 bp):
CCGTGTGGGCCCACACGC
Found at i:10175208 original size:28 final size:28
Alignment explanation
Indices: 10175184--10175246 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
10175174 TTCAGTGTAT
10175184 GAAATATTGAGAATGGCACTTAGTGTGC
1 GAAATATTGAGAATGGCACTTAGTGTGC
* **
10175212 GAGATATTGAGAATGAAACTTAGTGTGC
1 GAAATATTGAGAATGGCACTTAGTGTGC
10175240 GAAATAT
1 GAAATAT
10175247 CGAATAATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.29
Consensus pattern (28 bp):
GAAATATTGAGAATGGCACTTAGTGTGC
Found at i:10192052 original size:2 final size:2
Alignment explanation
Indices: 10192045--10192083 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
10192035 TTATTTATTA
10192045 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10192084 CACTTGCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10192506 original size:8 final size:9
Alignment explanation
Indices: 10192485--10192516 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
10192475 TACAAAAGTG
10192485 ATGATAACA
1 ATGATAACA
10192494 ATGATAA-A
1 ATGATAACA
10192502 ATGATAACA
1 ATGATAACA
10192511 ATGATA
1 ATGATA
10192517 TTAGTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (9 bp):
ATGATAACA
Found at i:10192620 original size:22 final size:23
Alignment explanation
Indices: 10192590--10192645 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
10192580 TAAGAAAGGA
*
10192590 AATAATAATATGGTAA-AAAAAT
1 AATAGTAATATGGTAAGAAAAAT
*
10192612 AATAGTAATATGTTAATGAAAAAT
1 AATAGTAATATGGTAA-GAAAAAT
*
10192636 AATGGTAATA
1 AATAGTAATA
10192646 ATAATAATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 14 0.48
24 15 0.52
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (23 bp):
AATAGTAATATGGTAAGAAAAAT
Found at i:10192682 original size:22 final size:22
Alignment explanation
Indices: 10192633--10192689 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
10192623 GTTAATGAAA
*
10192633 AATAATGGTAATAATAATAATG
1 AATAATGGTAATAAAAATAATG
*
10192655 ATTAATGGTAATAAAAATATAT-
1 AATAATGGTAATAAAAATA-ATG
*
10192677 AATAATAGTAATA
1 AATAATGGTAATA
10192690 CGAAGTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (22 bp):
AATAATGGTAATAAAAATAATG
Found at i:10192924 original size:15 final size:16
Alignment explanation
Indices: 10192871--10192924 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
10192861 TATAATGATA
*
10192871 ATATTAATAGAAATAG
1 ATATAAATAGAAATAG
10192887 ATATAAA-AGAAATAG
1 ATATAAATAGAAATAG
*
10192902 CA-AT-AATAGTAATA-
1 -ATATAAATAGAAATAG
10192916 ATATAAATA
1 ATATAAATA
10192925 ATAATATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 1 0.03
14 4 0.12
15 20 0.62
16 7 0.22
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (16 bp):
ATATAAATAGAAATAG
Found at i:10193153 original size:132 final size:140
Alignment explanation
Indices: 10192980--10193229 Score: 322
Period size: 132 Copynumber: 1.8 Consensus size: 140
10192970 CATAATAATA
*
10192980 ATAATAATAATATTAAAGTAAAGTAAATAAAAATAACACTATATATAAACATATAT-ATATACAT
1 ATAATAATAATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATAATATACAT
* * *
10193044 ATA-GA-ATATAAATACAC-ACTA-AT-GT-ATAATAATAATAGTAATAATATTGAAATACAAAA
66 ATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAAA
10193103 AAAAGTAAAT
131 AAAAGTAAAT
* * *
10193113 ATAATAA-AATATTAAAA-ATAAGT-AATGAAGAATAATACTATATATAAATATATATACATATA
1 ATAATAATAATATTAAAATA-AAGTAAAT-AAAAATAACACTATATATAAACATATATA-ATATA
* *
10193175 CCTATACGATAAAGAAATACACTATTATATGGTAATAATAATAATAATAATAATA
63 CATATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATA
10193230 ATAATAATAG
Statistics
Matches: 98, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
131 4 0.04
132 38 0.39
133 7 0.07
134 10 0.10
135 2 0.02
136 10 0.10
137 3 0.03
138 2 0.02
139 2 0.02
140 20 0.20
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (140 bp):
ATAATAATAATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATAATATACAT
ATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAAA
AAAAGTAAAT
Found at i:10193215 original size:3 final size:3
Alignment explanation
Indices: 10193207--10193382 Score: 107
Period size: 3 Copynumber: 58.7 Consensus size: 3
10193197 TATTATATGG
10193207 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAGA -AGA TAA -AA -AGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A
* * * ** * *
10193252 TAA TAA TAA T-A TAG TAG TAG TAA TAA CCA TGAA -AG TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
* ** * *
10193296 TAG TAA TAA TAA TGG TAA TAA TGA TAA TTAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
*
10193342 T-A TAAA TGA TAA T-A TACA T-A TGAA TAA TAA TAA TAA TAA TA
1 TAA T-AA TAA TAA TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TA
10193383 GCAATAATTT
Statistics
Matches: 137, Mismatches: 22, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
2 12 0.09
3 112 0.82
4 13 0.09
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:10195594 original size:21 final size:20
Alignment explanation
Indices: 10195568--10195624 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
10195558 TCGAAGACTG
*
10195568 AACAGAAGCACATAAGTGCTA
1 AACAGAAGC-CATAAGGGCTA
* *
10195589 AACAGAAATCCATAAGGGTTA
1 AACAG-AAGCCATAAGGGCTA
10195610 AACAGAAGCTCATAA
1 AACAGAAGC-CATAA
10195625 AAGAGCTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (20 bp):
AACAGAAGCCATAAGGGCTA
Found at i:10195696 original size:42 final size:42
Alignment explanation
Indices: 10195589--10195706 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
10195579 ATAAGTGCTA
*
10195589 AACAGAAATCCATAAGGGTTAAACAGAAGCTCATAAAAGAGCTG
1 AACAGAAATCCATAAGGGTTAAACAGAAGCT--TAAAAGAGCCG
**
10195633 AAC-GAAAATGAATAAGGGTTAAACAGAAGCTTAAAAGAGCCG
1 AACAG-AAATCCATAAGGGTTAAACAGAAGCTTAAAAGAGCCG
* *
10195675 AACAGAAA-CTCATATGAGTTAAACAGAAGCTT
1 AACAGAAATC-CATAAGGGTTAAACAGAAGCTT
10195707 GTGAGAGCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 35 0.55
43 2 0.03
44 27 0.42
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (42 bp):
AACAGAAATCCATAAGGGTTAAACAGAAGCTTAAAAGAGCCG
Found at i:10197400 original size:27 final size:27
Alignment explanation
Indices: 10197369--10197459 Score: 164
Period size: 27 Copynumber: 3.4 Consensus size: 27
10197359 AATCATCGTG
* *
10197369 GTTGGATGAGATTAAAAGTTAGCAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
10197396 GTTGGATGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
10197423 GTTGGATGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
10197450 GTTGGATGAG
1 GTTGGATGAG
10197460 TCTTTGATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.40, C:0.01, G:0.32, T:0.27
Consensus pattern (27 bp):
GTTGGATGAGATTAAAAGTAAGAAGAT
Found at i:10205049 original size:14 final size:14
Alignment explanation
Indices: 10205030--10205058 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10205020 TAATAAAAAA
10205030 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
10205044 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
10205058 T
1 T
10205059 GACTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TTAAAATTTGAAAT
Found at i:10209954 original size:38 final size:37
Alignment explanation
Indices: 10209864--10209954 Score: 103
Period size: 37 Copynumber: 2.4 Consensus size: 37
10209854 ACCCACTACC
* * *
10209864 GTGGTGTGTAAGGTGGAGGAGCCTATAATAGCCCTTT
1 GTGGTGTGTAGGGTGGAGGAGCCTACAATAGCCCATT
* *
10209901 GTAGTGTGTAGGGTGGATGG-GCCTACCATAGCCCAATT
1 GTGGTGTGTAGGGTGGA-GGAGCCTACAATAGCCC-ATT
*
10209939 GTGGTGTGCAGGGTGG
1 GTGGTGTGTAGGGTGG
10209955 TTGGAGTAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
37 27 0.60
38 18 0.40
ACGTcount: A:0.19, C:0.14, G:0.40, T:0.27
Consensus pattern (37 bp):
GTGGTGTGTAGGGTGGAGGAGCCTACAATAGCCCATT
Found at i:10212893 original size:21 final size:21
Alignment explanation
Indices: 10212869--10212910 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10212859 GAAAATTTAG
10212869 TAAATTAAAATAAAAATAAAA
1 TAAATTAAAATAAAAATAAAA
**
10212890 TAAATTGTAATAAAAATAAAA
1 TAAATTAAAATAAAAATAAAA
10212911 ATGGCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (21 bp):
TAAATTAAAATAAAAATAAAA
Found at i:10214705 original size:2 final size:2
Alignment explanation
Indices: 10214700--10214748 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
10214690 TGTGAGTGTG
10214700 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10214742 TA TA TA T
1 TA TA TA T
10214749 GTCGGCTCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10214848 original size:37 final size:38
Alignment explanation
Indices: 10214799--10214886 Score: 115
Period size: 37 Copynumber: 2.3 Consensus size: 38
10214789 CACTACTGTT
* *
10214799 GTGTGTAGGGTGGACGAGCCTATAATAGCCC-TTTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
* * * *
10214836 GTGTGTAAGGTGGATGGGCCTACCATAGCCCAATTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
10214874 GTGTGTAGGGTGG
1 GTGTGTAGGGTGG
10214887 TTGGAGTGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 26 0.60
38 17 0.40
ACGTcount: A:0.18, C:0.15, G:0.39, T:0.28
Consensus pattern (38 bp):
GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
Found at i:10215783 original size:8 final size:8
Alignment explanation
Indices: 10215770--10215799 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
10215760 AGAAAGATGA
10215770 AGAAGTGT
1 AGAAGTGT
10215778 AGAAGTGT
1 AGAAGTGT
10215786 AGAAGTGT
1 AGAAGTGT
10215794 AGAAGT
1 AGAAGT
10215800 AGGGCTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (8 bp):
AGAAGTGT
Found at i:10222467 original size:31 final size:31
Alignment explanation
Indices: 10222432--10222493 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10222422 ATGCTATTTA
10222432 TCATCAATCGATGCTACATTCAATATTTCAT
1 TCATCAATCGATGCTACATTCAATATTTCAT
10222463 TCATCAATCGATGCTACATTCAATATTTCAT
1 TCATCAATCGATGCTACATTCAATATTTCAT
10222494 ACTAACATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (31 bp):
TCATCAATCGATGCTACATTCAATATTTCAT
Found at i:10222739 original size:13 final size:13
Alignment explanation
Indices: 10222723--10222815 Score: 69
Period size: 13 Copynumber: 6.8 Consensus size: 13
10222713 TTGTGTACAA
10222723 GGTTCGCACATAT
1 GGTTCGCACATAT
* *
10222736 GGTTCACACCTAT
1 GGTTCGCACATAT
10222749 GTGTTTCGCACATAT
1 G-G-TTCGCACATAT
* * *
10222764 GGTTCACACTTAG
1 GGTTCGCACATAT
* *
10222777 GGTTCACATATAT
1 GGTTCGCACATAT
*
10222790 GGGTTCGCACCTAT
1 -GGTTCGCACATAT
*
10222804 AGGTTTGCACAT
1 -GGTTCGCACAT
10222816 TCAAGGGGGT
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
13 30 0.49
14 21 0.34
15 10 0.16
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (13 bp):
GGTTCGCACATAT
Found at i:10222768 original size:41 final size:41
Alignment explanation
Indices: 10222722--10222815 Score: 100
Period size: 41 Copynumber: 2.3 Consensus size: 41
10222712 CTTGTGTACA
* * *
10222722 AGGTTCGCACATATGGTTCACACCTATGTGTTTCGCACATAT
1 AGGTTCGCACATAGGGTTCACACATATG-GGTTCGCACATAT
* * * *
10222764 -GGTTCACACTTAGGGTTCACATATATGGGTTCGCACCTAT
1 AGGTTCGCACATAGGGTTCACACATATGGGTTCGCACATAT
*
10222804 AGGTTTGCACAT
1 AGGTTCGCACAT
10222816 TCAAGGGGGT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
40 11 0.27
41 30 0.73
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (41 bp):
AGGTTCGCACATAGGGTTCACACATATGGGTTCGCACATAT
Found at i:10222848 original size:23 final size:23
Alignment explanation
Indices: 10222822--10222988 Score: 76
Period size: 22 Copynumber: 7.2 Consensus size: 23
10222812 ACATTCAAGG
10222822 GGGTTCGCATAAATACATATATA
1 GGGTTCGCATAAATACATATATA
* * * *
10222845 GGGTTCACATAGTACACATAAATA
1 GGGTTCGCATA-AATACATATATA
* * *
10222869 GGGTTCACGT-AATAACATGT-TCA
1 GGGTTCGCATAAAT-ACATATAT-A
* * * *
10222892 AGGTTCGTATATACACAAATATATA
1 GGGTTCGCATA-A-ATACATATATA
* * *
10222917 GGGTTCGCATGAATA-ACACATA
1 GGGTTCGCATAAATACATATATA
* * *
10222939 GGGTTCGCATGAATA-ACACATA
1 GGGTTCGCATAAATACATATATA
10222961 GGGTTCGCATAACAATACAT-T-TA
1 GGGTTCGCAT-A-AATACATATATA
10222984 GGGTT
1 GGGTT
10222989 GAAATGTATA
Statistics
Matches: 109, Mismatches: 25, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
22 39 0.36
23 30 0.28
24 23 0.21
25 15 0.14
26 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.28
Consensus pattern (23 bp):
GGGTTCGCATAAATACATATATA
Found at i:10222941 original size:22 final size:22
Alignment explanation
Indices: 10222914--10222970 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
10222904 ACACAAATAT
10222914 ATAGGGTTCGCATGAATAACAC
1 ATAGGGTTCGCATGAATAACAC
10222936 ATAGGGTTCGCATGAATAACAC
1 ATAGGGTTCGCATGAATAACAC
10222958 ATAGGGTTCGCAT
1 ATAGGGTTCGCAT
10222971 AACAATACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (22 bp):
ATAGGGTTCGCATGAATAACAC
Found at i:10225511 original size:17 final size:15
Alignment explanation
Indices: 10225490--10225520 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10225480 TTTGGTTTCA
10225490 TATATATTATGAGCC
1 TATATATTATGAGCC
10225505 TATATATTATGAGCC
1 TATATATTATGAGCC
10225520 T
1 T
10225521 GTTTCATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (15 bp):
TATATATTATGAGCC
Found at i:10225782 original size:25 final size:25
Alignment explanation
Indices: 10225753--10225807 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
10225743 ATATGATATC
10225753 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
10225778 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
*
10225803 GATGT
1 AATGT
10225808 CTATGTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (25 bp):
AATGTATAATGAATTTGGACAAATT
Found at i:10226492 original size:13 final size:13
Alignment explanation
Indices: 10226474--10226511 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
10226464 TTTTACTCTT
10226474 GATTTTA-TAAAAA
1 GATTTTACT-AAAA
10226487 GATTTTACTAAAA
1 GATTTTACTAAAA
*
10226500 GATTTTGCTAAA
1 GATTTTACTAAA
10226512 TTTATGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 22 0.96
14 1 0.04
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (13 bp):
GATTTTACTAAAA
Found at i:10228276 original size:13 final size:13
Alignment explanation
Indices: 10228258--10228284 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10228248 GCTCAGTAGG
10228258 GACACGCCCGTGT
1 GACACGCCCGTGT
10228271 GACACGCCCGTGT
1 GACACGCCCGTGT
10228284 G
1 G
10228285 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:10232202 original size:13 final size:13
Alignment explanation
Indices: 10232184--10232208 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10232174 TGTGGGTGCA
10232184 CACGGCCGTGTCG
1 CACGGCCGTGTCG
10232197 CACGGCCGTGTC
1 CACGGCCGTGTC
10232209 TTGCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:10244924 original size:15 final size:15
Alignment explanation
Indices: 10244904--10244939 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
10244894 GTCCATTTAA
10244904 TTTTTAATTTATTTT
1 TTTTTAATTTATTTT
*
10244919 TTTTTAGTTTATTTT
1 TTTTTAATTTATTTT
10244934 TATTTT
1 T-TTTT
10244940 TGCATTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (15 bp):
TTTTTAATTTATTTT
Found at i:10246109 original size:41 final size:40
Alignment explanation
Indices: 10246021--10246114 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 40
10246011 AAAAATAAGC
10246021 ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
1 ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
* *
10246061 ATGAGCGGCGCTTAT-ATGAGAAACGCCGCTATA-GTTTGACC
1 ATTAGCGGCGCTTATCA-G-GAAACGCCGCTATATG-TTGACA
*
10246102 GTTAGCGGCGCTT
1 ATTAGCGGCGCTT
10246115 TAGGTAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.02
40 16 0.34
41 30 0.64
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
Found at i:10246499 original size:14 final size:14
Alignment explanation
Indices: 10246446--10246490 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
10246436 TTAATTATCA
*
10246446 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
10246460 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
*
10246474 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
10246488 TTA
1 TTA
10246491 AGGTGTAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:10246637 original size:22 final size:25
Alignment explanation
Indices: 10246575--10246623 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
10246565 TAAAATTTAA
*
10246575 GGGTTAGGGGTTAATGATTAGGGTC
1 GGGTTAGGGGTTAAGGATTAGGGTC
10246600 GGGTTAGGGGTTAAGGATTAGGGT
1 GGGTTAGGGGTTAAGGATTAGGGT
10246624 GTGTAGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.47, T:0.31
Consensus pattern (25 bp):
GGGTTAGGGGTTAAGGATTAGGGTC
Found at i:10247838 original size:159 final size:156
Alignment explanation
Indices: 10247550--10247894 Score: 444
Period size: 159 Copynumber: 2.2 Consensus size: 156
10247540 AGATTACTGC
* * *
10247550 CGTTTTTTAAAAAAACGCCGCAAAAAACAGTATAGTTTAAAGAAAACGGCGTCGTTTTAGTTGGA
1 CGTTTTTT-AAAAAACGCCGCAAAAAACAGTATAGTTTAAAGAAAACGACGCCGTTTTAGTTAGA
* * *
10247615 TAGGGGATTAGTGGCGTTTTGAAAAATGCCGTAACAGAATTAAAGTGTACTGGAAGCGTTGTCGT
65 TAGGGGATTAGTGGCGTTTTGAAAAATGCCGCAAAAGAATTAAAGTGTACTGGAAGCGTCGTCGT
10247680 TTTAGTTGAATATATAGGGGATTAGCAG
130 TTTAGTTGAATATATA-GGGATTAGCAG
* *
10247708 CGTTTTTCTAAAAAACACCGCAAAAGACAGTATTAGTTTAAAGAAAACGACGCCGTTTTAGTATA
1 CGTTTTT-TAAAAAACGCCGCAAAAAACAGTA-TAGTTTAAAGAAAACGACGCCGTTTTAGT-TA
*** * *
10247773 G-TAGTTTATTAGTGGCGCTTTT-AAAAATGCCGCAAAAGAATTAAAGTTTACTGTACA-CGTCG
63 GATAGGGGATTAGTGGCG-TTTTGAAAAATGCCGCAAAAGAATTAAAGTGTACTGGA-AGCGTCG
*
10247835 TCGTTTTAGTTGAATATATAGGGATTAGCGG
126 TCGTTTTAGTTGAATATATAGGGATTAGCAG
* * *
10247866 CATTTTTTTAATAAACGCCGCAAATAACA
1 C-GTTTTTTAAAAAACGCCGCAAAAAACA
10247895 TTAATGCTTA
Statistics
Matches: 162, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
158 56 0.35
159 99 0.61
160 7 0.04
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (156 bp):
CGTTTTTTAAAAAACGCCGCAAAAAACAGTATAGTTTAAAGAAAACGACGCCGTTTTAGTTAGAT
AGGGGATTAGTGGCGTTTTGAAAAATGCCGCAAAAGAATTAAAGTGTACTGGAAGCGTCGTCGTT
TTAGTTGAATATATAGGGATTAGCAG
Found at i:10249618 original size:8 final size:8
Alignment explanation
Indices: 10249605--10249655 Score: 93
Period size: 8 Copynumber: 6.4 Consensus size: 8
10249595 TGATTATGAT
10249605 AATAGTGG
1 AATAGTGG
10249613 AATAGTGG
1 AATAGTGG
10249621 AATAGTGG
1 AATAGTGG
*
10249629 AATAGTGT
1 AATAGTGG
10249637 AATAGTGG
1 AATAGTGG
10249645 AATAGTGG
1 AATAGTGG
10249653 AAT
1 AAT
10249656 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (8 bp):
AATAGTGG
Found at i:10250503 original size:48 final size:48
Alignment explanation
Indices: 10250451--10250612 Score: 134
Period size: 48 Copynumber: 3.3 Consensus size: 48
10250441 TTTTGTCTAC
10250451 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
** ** * * * ** *
10250499 TTTTATTTTATTTTATTTTATTTTATTTTAATCACGAA-AAAACTT-T-TGTCTAC
1 TTTTATTTTA---T-TTTTAAATTA-CCTAATTA--AATTAAA-TTGTATTTAAAG
10250552 TTTTATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
10250599 TTTTATTTTATTTT
1 TTTTATTTTATTTT
10250613 ATTTTATTTT
Statistics
Matches: 82, Mismatches: 20, Indels: 24
0.65 0.16 0.19
Matches are distributed among these distances:
45 4 0.05
46 4 0.05
47 18 0.22
48 21 0.26
51 1 0.01
52 8 0.10
53 18 0.22
54 4 0.05
55 4 0.05
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.58
Consensus pattern (48 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
Found at i:10250507 original size:5 final size:5
Alignment explanation
Indices: 10250499--10250528 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
10250489 GTATTTAAAG
10250499 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
10250529 ATCACGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10250522 original size:58 final size:57
Alignment explanation
Indices: 10250451--10250679 Score: 179
Period size: 58 Copynumber: 4.2 Consensus size: 57
10250441 TTTTGTCTAC
10250451 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGT-TTTAAAGTTTTATTTTA
** * * ** * *
10250509 TTTTATTTTA-TTTTATTTTA-ATCACGAAA--AAA--CTTTT---G-TCTACTTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTTTTAAAGTTTTA-TTTTA
* * *
10250557 --TT---TTA-TTTTAAATTACCTAATTAAATTAAATTGT-ATTTAAAGTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAA-TTAAAT-TGTTTTAAAGTTTTATTTTA
*
10250609 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGT-TTTAAAGTTTTATTTTA
10250667 -TTTATTTTATTTT
1 TTTTATTTTATTTT
10250680 AATGCCGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 41
0.68 0.11 0.21
Matches are distributed among these distances:
43 11 0.08
44 5 0.04
46 2 0.02
47 5 0.04
48 6 0.05
49 3 0.02
51 3 0.02
52 7 0.05
53 3 0.02
54 5 0.04
56 6 0.05
57 28 0.22
58 46 0.35
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (57 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTTTTAAAGTTTTATTTTA
Found at i:10250615 original size:100 final size:101
Alignment explanation
Indices: 10250441--10250622 Score: 357
Period size: 100 Copynumber: 1.8 Consensus size: 101
10250431 GTTTAAAATA
10250441 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
10250506 TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
10250542 TTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
10250606 TTATTTTATTTTATTTT
66 TTATTTTATTTTATTTT
10250623 TAAATTACCT
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
100 61 0.75
101 20 0.25
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (101 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
Found at i:10250653 original size:29 final size:29
Alignment explanation
Indices: 10250563--10250657 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
10250553 TTTATTTTAT
10250563 TTTAAATTACCTAATTAAATTAAATTGTA
1 TTTAAATTACCTAATTAAATTAAATTGTA
* ** ** *
10250592 TTTAAAGTT---TTATTTTATTTTATTTTA
1 TTTAAA-TTACCTAATTAAATTAAATTGTA
10250619 TTTTTAAATTACCTAATTAAATTAAATTGTA
1 --TTTAAATTACCTAATTAAATTAAATTGTA
10250650 TTTAAATT
1 TTTAAATT
10250658 TTTATTTTAT
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
27 12 0.25
28 2 0.04
29 20 0.42
30 2 0.04
31 12 0.25
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.55
Consensus pattern (29 bp):
TTTAAATTACCTAATTAAATTAAATTGTA
Found at i:10250661 original size:100 final size:99
Alignment explanation
Indices: 10250455--10250764 Score: 270
Period size: 95 Copynumber: 3.1 Consensus size: 99
10250445 GTCTACTTTT
10250455 ATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTA-
1 ATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAT
** * * *
10250519 TTTTATTTTAATCACGAA-AAAACTT---TTGTCTACTTT-T
65 TTTTAAATT-A-C-CTAATTAAA-TTAAATTG--TA-TTTAA
10250556 ATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATT
1 ATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATT
10250621 TTTAAATTACCTAATTAAATTAAATTGTATTTAA
66 TTTAAATTACCTAATTAAATTAAATTGTATTTAA
* * * * * ** * * *
10250655 ATTTTTATTTT--ATT---TATTTTATTTTAA-TGCCGA-AAAAACTTTT-GTCTACTTTTATTT
1 A-TTTTATTTTAAATTACCTAATTAAATTAAATTG--TATTTAAAGTTTTATTTTA-TTTTATTT
10250712 TATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
62 TATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
10250750 AGTTTTATTTTAAAT
1 A-TTTTATTTTAAAT
10250765 ATTTTATTTT
Statistics
Matches: 181, Mismatches: 16, Indels: 28
0.80 0.07 0.12
Matches are distributed among these distances:
94 5 0.03
95 72 0.40
96 1 0.01
97 2 0.01
98 11 0.06
99 7 0.04
100 67 0.37
101 16 0.09
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (99 bp):
ATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATT
TTTAAATTACCTAATTAAATTAAATTGTATTTAA
Found at i:10250671 original size:57 final size:58
Alignment explanation
Indices: 10250552--10250679 Score: 233
Period size: 58 Copynumber: 2.2 Consensus size: 58
10250542 TTTTGTCTAC
10250552 TTTTATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
*
10250609 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
10250667 -TTTATTTTATTTT
1 TTTTATTTTATTTT
10250680 AATGCCGAAA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
57 23 0.33
58 46 0.67
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (58 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
Found at i:10250757 original size:95 final size:98
Alignment explanation
Indices: 10250609--10250839 Score: 328
Period size: 105 Copynumber: 2.3 Consensus size: 98
10250599 TTTTATTTTA
10250609 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-TTTT-TATTTTA-TTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATATTTTATTTTA
*
10250671 TTTTATTTTAATGC-CGAA-AAAACTTTTGTCTAC
66 TTTTATTTTAAT-CAAGAAGAAAA-TTTTGTCTAC
10250704 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TTTT--ATATTT
*
10250769 TATTTTATTTTATTTTAATCAAGAAGAATATTTTGTCTAC
59 TATTTTATTTTATTTTAATCAAGAAGAAAATTTTGTCTAC
10250809 TTTTATTTTATTTTTAAATTACCTAATTAAA
1 TTTTATTTTATTTTTAAATTACCTAATTAAA
10250840 AATAACCGAT
Statistics
Matches: 122, Mismatches: 2, Indels: 14
0.88 0.01 0.10
Matches are distributed among these distances:
95 47 0.39
101 4 0.03
104 8 0.07
105 60 0.49
106 3 0.02
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (98 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATATTTTATTTTA
TTTTATTTTAATCAAGAAGAAAATTTTGTCTAC
Found at i:10250821 original size:152 final size:152
Alignment explanation
Indices: 10250454--10250774 Score: 448
Period size: 153 Copynumber: 2.1 Consensus size: 152
10250444 TGTCTACTTT
* ** * *
10250454 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTA
1 TATTTTATTTTTAAATTACCTAATCAAAAGAAATTGTATGTAAA-----CTTTTATTTTA-TTTA
10250519 TTTTATTTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAATT
60 TTTTATTTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAATT
**
10250584 AAATTGTATTTAAAGTTTTATTTTATTT
125 AAATTGTATTTAAAGTTTTATTTTATAA
* ** * *
10250612 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTATTTATTTTAT
1 TATTTTATTTTTAAATTACCTAATCAAAAGAAATTGTATGTAAACTTTTATTTTATTTATTTTAT
10250677 TTTAATGC-CGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAAT
66 TTTAAT-CACGAAAAAACTTTTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAATTAAAT
10250741 TGTATTTAAAGTTTTATTTTA-AA
129 TGTATTTAAAGTTTTATTTTATAA
10250764 TATTTTATTTT
1 TATTTTATTTT
10250775 ATTTTATTTT
Statistics
Matches: 158, Mismatches: 3, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
152 56 0.35
153 58 0.37
158 44 0.28
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (152 bp):
TATTTTATTTTTAAATTACCTAATCAAAAGAAATTGTATGTAAACTTTTATTTTATTTATTTTAT
TTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAATTAAATTG
TATTTAAAGTTTTATTTTATAA
Found at i:10251054 original size:10 final size:9
Alignment explanation
Indices: 10251038--10251144 Score: 67
Period size: 9 Copynumber: 11.7 Consensus size: 9
10251028 AAATATATAT
*
10251038 CATATTTTA
1 CATAATTTA
10251047 CATAATTTA
1 CATAATTTA
*
10251056 CATAACTTA
1 CATAATTTA
10251065 CATAA--TA
1 CATAATTTA
*
10251072 AATAAATATATA
1 CAT-AAT-T-TA
10251084 TCAT-ATCTTA
1 -CATAAT-TTA
*
10251094 CACAATTTA
1 CATAATTTA
**
10251103 CATAATTCG
1 CATAATTTA
* *
10251112 GATAACTTA
1 CATAATTTA
10251121 CATAATTTA
1 CATAATTTA
*
10251130 CATAACTTA
1 CATAATTTA
10251139 CATAAT
1 CATAAT
10251145 ACATAAATAT
Statistics
Matches: 74, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
7 4 0.05
8 2 0.03
9 57 0.77
10 4 0.05
11 3 0.04
12 2 0.03
13 2 0.03
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAATTTA
Found at i:10251065 original size:18 final size:18
Alignment explanation
Indices: 10251044--10251144 Score: 80
Period size: 18 Copynumber: 5.5 Consensus size: 18
10251034 ATATCATATT
10251044 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
* *
10251062 TTACATAA--TAAATAAA
1 TTACATAATTTACATAAC
* * *
10251078 TATATATCATATCTTACACAAT
1 T-TACAT-A-AT-TTACATAAC
***
10251100 TTACATAATTCGGATAAC
1 TTACATAATTTACATAAC
10251118 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
10251136 TTACATAAT
1 TTACATAAT
10251145 ACATAAATAT
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 37 0.60
19 3 0.05
20 1 0.02
21 4 0.06
22 6 0.10
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.38
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:10252900 original size:27 final size:28
Alignment explanation
Indices: 10252870--10252959 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
10252860 TTTAGTTTAC
10252870 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
10252897 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
10252924 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
10252951 TAAAATTAC
1 TAAAATTAC
10252960 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:10252968 original size:27 final size:26
Alignment explanation
Indices: 10252894--10252969 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
10252884 TACCCTTAGT
* *
10252894 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
10252921 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
10252948 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
10252970 CGATTTACAG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:10252975 original size:53 final size:54
Alignment explanation
Indices: 10252870--10252975 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
10252860 TTTAGTTTAC
*
10252870 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTG
* * *
10252924 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGTACCC-CGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-TACCCTCGATTT
10252976 ACAGAATTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
53 14 0.30
54 32 0.70
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTG
Found at i:10252986 original size:53 final size:53
Alignment explanation
Indices: 10252872--10252987 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 53
10252862 TAGTTTACTA
* **
10252872 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTAC
* *
10252925 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGTACCC-CGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-TACCCTCGATTTAC
10252978 AGAATTACCG
1 A-AATTACCG
10252988 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
53 24 0.44
54 30 0.56
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTAC
Found at i:10253010 original size:27 final size:27
Alignment explanation
Indices: 10252965--10253390 Score: 447
Period size: 27 Copynumber: 15.8 Consensus size: 27
10252955 ATTACTAAAG
*
10252965 TACCCC-GATTTACAGAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
10252991 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
10253018 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
10253045 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
10253072 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
10253099 TACCCCTGATTTA-TTAAATTATCGTTT
1 TACCCCTGATTTACAT-AATTACCGTTT
* *
10253126 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
10253153 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
10253180 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
10253207 TACCCCTAATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
10253234 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
10253261 TA-CCCTCGATTTAC-TGAATTACTGTTT
1 TACCCCT-GATTTACAT-AATTACCGTTT
* * * **
10253288 TACCCTTGATTTATAGAATTACTATTT
1 TACCCCTGATTTACATAATTACCGTTT
* * * *
10253315 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* **
10253342 TACCCTTGATTTAC-TGAATTATTGTTT
1 TACCCCTGATTTACAT-AATTACCGTTT
*
10253369 TA-CCCTCGATTTACAAAATTAC
1 TACCCCT-GATTTACATAATTAC
10253391 TAAAATACCC
Statistics
Matches: 345, Mismatches: 41, Indels: 27
0.84 0.10 0.07
Matches are distributed among these distances:
26 22 0.06
27 312 0.90
28 11 0.03
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCCTGATTTACATAATTACCGTTT
Found at i:10253075 original size:81 final size:81
Alignment explanation
Indices: 10252965--10253390 Score: 551
Period size: 81 Copynumber: 5.3 Consensus size: 81
10252955 ATTACTAAAG
10252965 TACCC-CGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
10253029 TACAT-AATTATCGTTT
66 TAC-TGAATTATCGTTT
*
10253045 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
* *
10253110 TATTAAATTATCGTTT
66 TACTGAATTATCGTTT
*
10253126 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
10253191 TACAT-AATTATCGTTT
66 TAC-TGAATTATCGTTT
* * * * * *
10253207 TACCC-CTAATTTACATAATTATCGTTTTA-CCCTCGACTTACAGAATTACCGTTTTA-CCCTCG
1 TACCCTC-GATTTACAGAATTACCGTTTTACCCCT-AATTTACATAATTACCGTTTTACCCCT-G
10253269 ATTTACTGAATTA-CTGTTT
63 ATTTACTGAATTATC-GTTT
* * ** * * * * * *
10253288 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
*
10253353 TACTGAATTATTGTTT
66 TACTGAATTATCGTTT
*
10253369 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
10253391 TAAAATACCC
Statistics
Matches: 308, Mismatches: 26, Indels: 23
0.86 0.07 0.06
Matches are distributed among these distances:
80 17 0.06
81 284 0.92
82 7 0.02
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
TACTGAATTATCGTTT
Found at i:10253428 original size:81 final size:81
Alignment explanation
Indices: 10253262--10253434 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 81
10253252 TTACCGTTTT
* * * ***
10253262 ACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTT
1 ACCCTCGATTTACTGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
* ****
10253327 ATAGAATTACTGTTTT
66 ATAGAATTACCGAAAA
* *
10253343 ACCCTTGATTTACTGAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT-AGTT
1 ACCCTCGATTTACTGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGA-TT
*
10253407 TGT-GAAATTACCGAAAA
65 TATAG-AATTACCGAAAA
*
10253424 ACCCTCAATTT
1 ACCCTCGATTT
10253435 GTAAAATTAC
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
80 2 0.03
81 72 0.97
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (81 bp):
ACCCTCGATTTACTGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
ATAGAATTACCGAAAA
Found at i:10253544 original size:27 final size:27
Alignment explanation
Indices: 10253378--10253544 Score: 113
Period size: 27 Copynumber: 6.1 Consensus size: 27
10253368 TTACCCTCGA
*
10253378 TTTACAAAATTACTAAAATACCCTTAG
1 TTTACAAAATTACTGAAATACCCTTAG
*** * * * *
10253405 TTTGTGAAATTACCGAAAAACCCTCAA
1 TTTACAAAATTACTGAAATACCCTTAG
** ** * *
10253432 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTACAAAATTACTGAAATACCCTTAG
* * *
10253459 TTTACAAAGTTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTT-AG
* *
10253487 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTAG
10253515 TTTACAAAATTACTGAAATACCCTTAG
1 TTTACAAAATTACTGAAATACCCTTAG
10253542 TTT
1 TTT
10253545 GTAGATTTAC
Statistics
Matches: 107, Mismatches: 27, Indels: 12
0.73 0.18 0.08
Matches are distributed among these distances:
27 82 0.77
28 8 0.07
29 17 0.16
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTAG
Found at i:10253662 original size:27 final size:27
Alignment explanation
Indices: 10253600--10253662 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
10253590 CCCTATTAGC
*
10253600 TAAAAAGACCGTAAAGCCCCTGTAGGG
1 TAAAATGACCGTAAAGCCCCTGTAGGG
* *
10253627 TAAAGTGACCGTAATA-CCCCTGTATGG
1 TAAAATGACCGTAA-AGCCCCTGTAGGG
10253654 TAAAATGAC
1 TAAAATGAC
10253663 GAATATGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGTAAAGCCCCTGTAGGG
Found at i:10254848 original size:25 final size:25
Alignment explanation
Indices: 10254820--10254867 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10254810 TTATACCATG
* *
10254820 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
10254845 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
10254868 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:10254970 original size:20 final size:20
Alignment explanation
Indices: 10254910--10254970 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
10254900 ATAAATATGG
*
10254910 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
10254930 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
10254950 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
10254970 T
1 T
10254971 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:10255047 original size:24 final size:24
Alignment explanation
Indices: 10255020--10255162 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
10255010 GAGGAAGTGA
10255020 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
10255044 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
10255068 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
10255091 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
10255115 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
10255139 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
10255163 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:10255113 original size:47 final size:47
Alignment explanation
Indices: 10255020--10255162 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
10255010 GAGGAAGTGA
10255020 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
10255068 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
10255115 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
10255163 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:10255136 original size:71 final size:72
Alignment explanation
Indices: 10255020--10255163 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
10255010 GAGGAAGTGA
*
10255020 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
10255083 CCAGTTAT
65 CCAGTTAT
** * *
10255091 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
10255156 CAGTTAT
66 CAGTTAT
10255163 A
1 A
10255164 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:10255389 original size:31 final size:31
Alignment explanation
Indices: 10255354--10255417 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
10255344 CGTTTACAGT
10255354 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
10255385 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
10255416 AA
1 AA
10255418 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:10260494 original size:13 final size:14
Alignment explanation
Indices: 10260478--10260506 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10260468 TTATAAATAT
10260478 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
10260491 TTATAATGGTTTAA
1 TTATAATGGTTTAA
10260505 TT
1 TT
10260507 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:10260945 original size:21 final size:21
Alignment explanation
Indices: 10260918--10260970 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
10260908 TTAGAGAAGC
*
10260918 GGCAGCAGCGAGAGAGGCAGC
1 GGCAGCAGCGAGAGAGGCAGA
*
10260939 TGCAGCAGCGAGAGAGGCAGA
1 GGCAGCAGCGAGAGAGGCAGA
10260960 GGCAGCAGCGA
1 GGCAGCAGCGA
10260971 TGGCAGTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.45, T:0.02
Consensus pattern (21 bp):
GGCAGCAGCGAGAGAGGCAGA
Found at i:10261256 original size:30 final size:31
Alignment explanation
Indices: 10261222--10261286 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
10261212 TGTATTTTTT
* *
10261222 ATGCTACATTTGCT-TTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTTTAGGTTGGATTTA
* *
10261252 ATGCTATATTTTCTGTTTTAGGTTGGATTTA
1 ATGCTACATTTGCTGTTTTAGGTTGGATTTA
10261283 ATGC
1 ATGC
10261287 AGGAAAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTAGGTTGGATTTA
Found at i:10262080 original size:13 final size:13
Alignment explanation
Indices: 10262039--10262102 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
10262029 ACACTTAAAT
*
10262039 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
* *
10262052 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
10262065 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
**
10262078 TTTTCCACCA-CAC
1 TTTT-CAAAAGCAC
10262091 TTTTCAAAAGCA
1 TTTTCAAAAGCA
10262103 ATGAAGAACA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
12 3 0.08
13 34 0.85
14 3 0.08
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:10265179 original size:28 final size:28
Alignment explanation
Indices: 10265145--10265246 Score: 120
Period size: 28 Copynumber: 3.6 Consensus size: 28
10265135 CTTACACCCG
10265145 ATCTCGCACACATAGTGCTCGGTTAATA
1 ATCTCGCACACATAGTGCTCGGTTAATA
* **
10265173 ATTTCGCACACATAGTGC-C--TTACACCCG
1 ATCTCGCACACATAGTGCTCGGTTA-A--TA
*
10265201 ATCTCGCACACATAGTGCTCGGTTACTA
1 ATCTCGCACACATAGTGCTCGGTTAATA
10265229 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
10265247 ATATATTCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 52 0.85
29 1 0.02
31 3 0.05
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGGTTAATA
Found at i:10265199 original size:56 final size:56
Alignment explanation
Indices: 10265124--10265246 Score: 219
Period size: 56 Copynumber: 2.2 Consensus size: 56
10265114 AATTTTGCAT
* *
10265124 ACACACAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATTTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCGC
*
10265180 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTACTAATCTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCGC
10265236 ACACATAGTGC
1 ACACATAGTGC
10265247 ATATATTCAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (56 bp):
ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCGC
Found at i:10272607 original size:16 final size:16
Alignment explanation
Indices: 10272583--10272613 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10272573 TGTCAACATC
*
10272583 GTGAGGCATAAAAATA
1 GTGACGCATAAAAATA
10272599 GTGACGCATAAAAAT
1 GTGACGCATAAAAAT
10272614 TTGTAAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.23, T:0.19
Consensus pattern (16 bp):
GTGACGCATAAAAATA
Found at i:10277370 original size:31 final size:28
Alignment explanation
Indices: 10277334--10277395 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
10277324 ATATACTATT
10277334 AAAATA-ATGAAATTACATTTTTCCTATCATA
1 AAAATATAT-AAATTA-ATTTTTCCT-TCA-A
*
10277365 AAAATATATAATTTAATTTTTCCTTCAA
1 AAAATATATAAATTAATTTTTCCTTCAA
10277393 AAA
1 AAA
10277396 GATTCTAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 4 0.14
29 3 0.10
30 9 0.31
31 11 0.38
32 2 0.07
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (28 bp):
AAAATATATAAATTAATTTTTCCTTCAA
Found at i:10278382 original size:60 final size:60
Alignment explanation
Indices: 10278309--10278425 Score: 234
Period size: 60 Copynumber: 1.9 Consensus size: 60
10278299 ATAGAAGAAA
10278309 TTATCCAAATAATTGGAATCATATTTTTCAACGTCAAATTTTTCCCACCATTTCGTTTTC
1 TTATCCAAATAATTGGAATCATATTTTTCAACGTCAAATTTTTCCCACCATTTCGTTTTC
10278369 TTATCCAAATAATTGGAATCATATTTTTCAACGTCAAATTTTTCCCACCATTTCGTT
1 TTATCCAAATAATTGGAATCATATTTTTCAACGTCAAATTTTTCCCACCATTTCGTT
10278426 CTAAAATTTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (60 bp):
TTATCCAAATAATTGGAATCATATTTTTCAACGTCAAATTTTTCCCACCATTTCGTTTTC
Found at i:10280386 original size:25 final size:26
Alignment explanation
Indices: 10280349--10280400 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
10280339 TCAAACATGC
10280349 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
10280375 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
10280400 A
1 A
10280401 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:10281923 original size:26 final size:26
Alignment explanation
Indices: 10281885--10281968 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
10281875 CATGAAATTC
10281885 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
10281911 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
10281937 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
10281963 TTATCA
1 TTATCA
10281969 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:10286100 original size:25 final size:26
Alignment explanation
Indices: 10286063--10286114 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
10286053 TCAAACATGC
10286063 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
10286089 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
10286114 A
1 A
10286115 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:10287633 original size:26 final size:26
Alignment explanation
Indices: 10287595--10287678 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
10287585 CATGAAATTC
10287595 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
10287621 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
10287647 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
10287673 TTATCA
1 TTATCA
10287679 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:10289211 original size:138 final size:138
Alignment explanation
Indices: 10289005--10289373 Score: 533
Period size: 138 Copynumber: 2.6 Consensus size: 138
10288995 TTTGACATGA
* * * *
10289005 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGTTGCCATGGTATCTT
** * * * **
10289069 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCA
61 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
10289134 TTTCATATCAGGT
126 TTTCATATCAGGT
10289147 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
10289212 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
10289277 TATTAGGT
131 TATCAGGT
* * * * *
10289285 TGTCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
10289350 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTACACATTTCATATCA
10289374 GAGAGCACAC
Statistics
Matches: 209, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
137 5 0.02
138 179 0.86
139 1 0.00
141 1 0.00
142 23 0.11
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:10289374 original size:46 final size:46
Alignment explanation
Indices: 10289053--10289374 Score: 500
Period size: 46 Copynumber: 7.0 Consensus size: 46
10289043 TTTCTGTCAT
* * * *
10289053 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
* *
10289099 GTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
* * * *
10289145 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
* *
10289191 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
* *
10289237 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
*
10289283 GTTGTCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
*
10289329 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
10289375 AGAGCACACT
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 257 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
Found at i:10291552 original size:16 final size:18
Alignment explanation
Indices: 10291523--10291563 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
10291513 TCATCCTTTC
10291523 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
10291540 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
10291557 TTACTTT
1 TTTCTTT
10291564 ATATATGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:10293077 original size:26 final size:27
Alignment explanation
Indices: 10293027--10293080 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
10293017 TTATACCATG
*
10293027 TATATAATTTTATAAATATTATATATA
1 TATATAATTTTATAAATATAATATATA
10293054 TATATATATTTT-T-AATATAATATATA
1 TATATA-ATTTTATAAATATAATATATA
10293080 T
1 T
10293081 TGTATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 13 0.52
27 7 0.28
28 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TATATAATTTTATAAATATAATATATA
Found at i:10293086 original size:29 final size:27
Alignment explanation
Indices: 10293024--10293097 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
10293014 ACATTATACC
*
10293024 ATGTATATA-ATTTTATAAATATTATAT
1 ATGTATATATATTTT-TAAATAATATAT
*
10293051 ATATATATATATTTTTAATATAATATAT
1 ATGTATATATATTTTTAA-ATAATATAT
* *
10293079 ATTGTATACATACTTTTAA
1 A-TGTATATATATTTTTAA
10293098 CATCATCATG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 11 0.28
28 14 0.36
29 14 0.36
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (27 bp):
ATGTATATATATTTTTAAATAATATAT
Found at i:10293594 original size:3 final size:3
Alignment explanation
Indices: 10293588--10293637 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
10293578 TTTTTCTTTC
10293588 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10293636 TT
1 TT
10293638 TATCATTGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10305968 original size:44 final size:44
Alignment explanation
Indices: 10305905--10306152 Score: 139
Period size: 44 Copynumber: 5.5 Consensus size: 44
10305895 GCCACATCAG
* * *
10305905 ATCTCCTTGAAATTTCAGTGGAGTTGATTGAAGTCACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTTGATTGAAGTCACAAGTCTT
** *
10305949 ATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAGAT-ATTCAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTTGATTGAAG-TCA--CAAGTCTT
* * *
10305994 ATTTCCCTGAAGTTGCAGTGGAACAGATTGGAGCTGAA-TTAC-AGATCTT
1 ATCTCCCTGAAGTTGCAGTGG---AG-TT-GA-TTGAAGTCACAAG-TCTT
* * * * * *
10306043 ATCTCCCTGAGGTTGCAGTGGAGAAT-ATCGAAGCCATTAA-CCTT
1 ATCTCCCTGAAGTTGCAGTGGAG-TTGATTGAAGTCA-CAAGTCTT
** * * **
10306087 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTTGATTGAAGTCACAAGTCTT
* *
10306131 ATCTCCTTGAAGTCGCAGTGGA
1 ATCTCCCTGAAGTTGCAGTGGA
10306153 ACAGACTAAA
Statistics
Matches: 158, Mismatches: 29, Indels: 34
0.71 0.13 0.15
Matches are distributed among these distances:
43 5 0.03
44 84 0.53
45 25 0.16
46 8 0.05
47 1 0.01
48 3 0.02
49 25 0.16
50 2 0.01
51 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGTTGATTGAAGTCACAAGTCTT
Found at i:10306195 original size:45 final size:45
Alignment explanation
Indices: 10306087--10306339 Score: 131
Period size: 45 Copynumber: 5.6 Consensus size: 45
10306077 CATTAACCTT
* * ** * * *
10306087 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAA-ACCA-CAAGTCTT
1 ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAGA-TAGCAAATCTC
* * * *
10306131 ATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGATAGCAAATCTT
1 ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAGATAGCAAATCTC
* * * **
10306176 ATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTC
1 ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAG--AT--AGCA-A-ATCTC
* * * ** * * * *
10306227 ATCTCTCTAAAGTTGCAATAGAGTAGA-T-CA-ACA-CAAGTCTT
1 ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAGATAGCAAATCTC
* * *
10306268 ATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGATAGCAAATCTC
1 ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAGATAGCAAATCTC
* *
10306313 ATTTCCCTGAAGTTGCAGTGGAACAGA
1 ATCTCCCTAAAGTTGCAGTGGAACAGA
10306340 TTGAAGCTAT
Statistics
Matches: 159, Mismatches: 38, Indels: 23
0.72 0.17 0.10
Matches are distributed among these distances:
41 26 0.16
42 2 0.01
43 2 0.01
44 31 0.19
45 65 0.41
46 1 0.01
47 2 0.01
49 3 0.02
50 2 0.01
51 25 0.16
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (45 bp):
ATCTCCCTAAAGTTGCAGTGGAACAGACTAAAGATAGCAAATCTC
Found at i:10306262 original size:137 final size:137
Alignment explanation
Indices: 10306121--10306414 Score: 462
Period size: 137 Copynumber: 2.1 Consensus size: 137
10306111 AGGTTAAAAC
* *
10306121 CACAAGTCTTATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGATAGCAAATCTTATTTCCCTAA
1 CACAAGTCTTATCTCCTTGAAGTCGCAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTAA
** *
10306186 AGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTCATCTCTCTAAAGTTGCAATAGAGT
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGT
10306251 AGATCAA
131 AGATCAA
* * * *
10306258 CACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGATAGCAAATCTCATTTCCCTGA
1 CACAAGTCTTATCTCCTTGAAGTCGCAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTAA
*
10306323 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAATAGAGT
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGT
10306388 AGATCAA
131 AGATCAA
* ** *
10306395 AACAAACCCTATCTCCTTGA
1 CACAAGTCTTATCTCCTTGA
10306415 GATTGCAGTG
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
137 142 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (137 bp):
CACAAGTCTTATCTCCTTGAAGTCGCAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTAA
AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGT
AGATCAA
Found at i:10306333 original size:182 final size:181
Alignment explanation
Indices: 10305939--10306339 Score: 434
Period size: 182 Copynumber: 2.2 Consensus size: 181
10305929 TGATTGAAGT
* * ** * * * *
10305939 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAGATATTCAATCTTATTTCCCTGA
1 CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGCAATCTTATTTCCCTAA
* * * * * * * *
10306004 AGTTGCAGTGGAACAGATTGGAGCTGAATTACAGATCTTATCTCCCTGAGGTTGCAGTGGAGAAT
66 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAGAAG
* **
10306069 ATCGAAGCCATTAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAC
131 ATCGAAGCCA-TAACCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAAC
* * * *
10306121 CACAAGTCTTATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGATA-GCAAATCTTATTTCCCTA
1 CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGC-AATCTTATTTCCCTA
* *
10306185 AAGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTCATCTCTCTAAAGTTGCAATAGAG
65 AAGTTGCAGTGGAACAGATTGAAGC--TAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAG
* **
10306250 TAGATC-AA-CACA-AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGA-
128 AAGATCGAAGC-CATAACCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAA-AC
* *
10306302 TAGCAAATCTCATTTCCCTGAAGTTGCAGTGGAACAGA
1 CA-CAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGA
10306340 TTGAAGCTAT
Statistics
Matches: 183, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
181 35 0.19
182 110 0.60
183 4 0.02
184 34 0.19
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (181 bp):
CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGCAATCTTATTTCCCTAA
AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAGAAG
ATCGAAGCCATAACCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAAC
Found at i:10308073 original size:2 final size:2
Alignment explanation
Indices: 10308059--10308113 Score: 73
Period size: 2 Copynumber: 29.5 Consensus size: 2
10308049 TATATAATTT
*
10308059 TA TA AA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10308099 TA -A TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA T
10308114 TGTGTACATA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
1 4 0.09
2 43 0.91
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10308628 original size:3 final size:3
Alignment explanation
Indices: 10308622--10308661 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
10308612 TCTTTCTTAC
10308622 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10308662 TATCATTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10313336 original size:92 final size:92
Alignment explanation
Indices: 10313224--10313499 Score: 462
Period size: 92 Copynumber: 3.0 Consensus size: 92
10313214 TTTCTGTCAT
*
10313224 GTTGCCATGGTATCTTTCAACCATGGTCTTATTTTTTTCATGTCACATTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCA
**
10313289 ACCATGGTCTTATTCATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
10313316 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCA
*
10313381 ACCATGGTCTTACACATTTCATATCAC
66 ACCATGGTCTTACACATTTCATATCAG
** * * **
10313408 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCA
10313473 ACCATGGTCTTACACATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
10313500 AGAGCACACT
Statistics
Matches: 173, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 173 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (92 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCA
ACCATGGTCTTACACATTTCATATCAG
Found at i:10313385 original size:138 final size:138
Alignment explanation
Indices: 10313176--10313484 Score: 449
Period size: 138 Copynumber: 2.2 Consensus size: 138
10313166 TTTGACATGA
* * * **
10313176 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCTGTCACATTGCCATGGTATCTTT
**** * **
10313241 CAACCATGGTCTTATTTTTTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTATTCAT
62 CAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACAT
10313306 TTCATATCAGGT
127 TTCATATCAGGT
10313318 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACATTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TGTCACATTGCCATGGTATCTTTCAA
*
10313382 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
10313447 ATATCAGGT
130 ATATCAGGT
10313456 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
10313485 CACATTTCAT
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
137 5 0.03
138 123 0.80
139 1 0.01
141 1 0.01
142 23 0.15
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCACATTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:10313499 original size:46 final size:46
Alignment explanation
Indices: 10313224--10313498 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
10313214 TTTCTGTCAT
**** *
10313224 GTTGCCATGGTATCTTTCAACCATGGTCTTATTTTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* ** *
10313270 ATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
** * *
10313316 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
10313362 ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
10313408 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
10313454 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
10313499 GAGAGCACAC
Statistics
Matches: 213, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 213 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:10315597 original size:15 final size:15
Alignment explanation
Indices: 10315577--10315614 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
10315567 AATTTTTCCC
*
10315577 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
10315592 TTTTTCCTTCCTTCT
1 TTTTTCCTTCCTTCT
10315607 TTCTTTCC
1 TT-TTTCC
10315615 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:10315689 original size:2 final size:2
Alignment explanation
Indices: 10315682--10315723 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
10315672 CCTTTTACTT
10315682 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10315724 ACTTAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10316569 original size:6 final size:6
Alignment explanation
Indices: 10316558--10316584 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10316548 GTTCTTCTAT
10316558 TTTTCC TTTTCC TTTTCC TTTTCC TTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTT
10316585 GTCTCTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTCC
Found at i:10318644 original size:7 final size:7
Alignment explanation
Indices: 10318622--10318655 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
10318612 ATTGATTAAT
10318622 ATTTAGAA
1 ATTTAG-A
10318630 ATTTTAGA
1 A-TTTAGA
10318638 ATTTAGA
1 ATTTAGA
10318645 ATTTAGA
1 ATTTAGA
10318652 ATTT
1 ATTT
10318656 TCTTATGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 17 0.68
8 3 0.12
9 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (7 bp):
ATTTAGA
Found at i:10318708 original size:12 final size:12
Alignment explanation
Indices: 10318691--10318717 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10318681 GAAAATAGGG
10318691 TTTTAGCGGCGT
1 TTTTAGCGGCGT
10318703 TTTTAGCGGCGT
1 TTTTAGCGGCGT
10318715 TTT
1 TTT
10318718 ATCAAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:10318897 original size:41 final size:41
Alignment explanation
Indices: 10318813--10319073 Score: 452
Period size: 41 Copynumber: 6.4 Consensus size: 41
10318803 GTTTTTTTAC
* * *
10318813 TAAAACGCCTCTAAAAA-CGGATCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
**
10318853 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAAG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
10318894 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
10318935 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
*
10318976 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
*
10319017 TAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
10319058 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
10319074 GTCATAGAAC
Statistics
Matches: 209, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
40 16 0.08
41 193 0.92
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
Found at i:10318921 original size:82 final size:82
Alignment explanation
Indices: 10318748--10319073 Score: 449
Period size: 82 Copynumber: 4.0 Consensus size: 82
10318738 TTTTAAAATA
* * * * * ** * *
10318748 CAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGTTAAAAA-CAGAGCAACAGCGGCGTTTTTTTA
1 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCG--CTTTCA
* *
10318812 CTAAAACGCCTCTAAAAA-
64 GTAAAACGCCGCTAAAAAC
* * * *
10318830 CGGATCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAAGT
1 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCAGT
10318895 AAAACGCCGCTAAAAAC
66 AAAACGCCGCTAAAAAC
* *
10318912 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCAGT
10318977 AAAACGCCGCTAAAAAC
66 AAAACGCCGCTAAAAAC
* *
10318994 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCAGT
10319059 AAAACGCCGCTAAAA
66 AAAACGCCGCTAAAA
10319074 GTCATAGAAC
Statistics
Matches: 222, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 20 0.09
82 188 0.85
83 14 0.06
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (82 bp):
CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCAGT
AAAACGCCGCTAAAAAC
Found at i:10318962 original size:123 final size:122
Alignment explanation
Indices: 10318748--10319073 Score: 492
Period size: 123 Copynumber: 2.7 Consensus size: 122
10318738 TTTTAAAATA
* * * ** * **
10318748 CAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGTTAAAAA-CAGAGCAACAGCGGCGTTTTTTTA
1 CAGAGCATTAGCGGCGCTTTAAGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCG--CTTTCG
* * * *
10318812 CTAAAACGCCTCTAAAAACGGATCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
64 GTAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
*
10318871 CAGAGCATTAGCGGCGCTTTAAGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 CAGAGCATTAGCGGCGCTTTAAGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
10318936 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
66 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
*
10318994 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 CAGAGCATTAGCGGCGCTTTAAGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
10319059 AAAACGCCGCTAAAA
66 AAAACGCCGCTAAAA
10319074 GTCATAGAAC
Statistics
Matches: 186, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
122 19 0.10
123 153 0.82
124 14 0.08
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (122 bp):
CAGAGCATTAGCGGCGCTTTAAGTAAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
Found at i:10319323 original size:36 final size:39
Alignment explanation
Indices: 10319253--10319328 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
10319243 ATAGTTTAAG
* * *
10319253 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
10319292 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
10319328 A
1 A
10319329 GTAATTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:10323233 original size:134 final size:132
Alignment explanation
Indices: 10323011--10323262 Score: 459
Period size: 134 Copynumber: 1.9 Consensus size: 132
10323001 TGGTGATTCC
10323011 ATTTTGGTTATTTAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCAACTTATGTGTTTAGTGT
1 ATTTTGGTTATTTAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCAACTTATGTGTTTAGTGT
*
10323076 GGACTTAGATTGATTTAAGAGTTTATTGCTGTTTTGTTGCTCACGTTTTATATAATAAAATTGTT
66 GGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGTT
10323141 AT
131 AT
* *
10323143 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGACGTTATTTTGGTCTG-TTTTCATGTTTCTAT-CAACTTATGTGTTTAGT
10323208 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
64 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
10323263 TGTTGAATTC
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
132 29 0.25
133 15 0.13
134 71 0.62
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.52
Consensus pattern (132 bp):
ATTTTGGTTATTTAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCAACTTATGTGTTTAGTGT
GGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGTT
AT
Found at i:10324408 original size:21 final size:21
Alignment explanation
Indices: 10324379--10324418 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
10324369 GTTTTTATAT
*
10324379 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
10324400 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
10324419 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:10326133 original size:372 final size:372
Alignment explanation
Indices: 10325448--10326360 Score: 1817
Period size: 372 Copynumber: 2.5 Consensus size: 372
10325438 CTTGTCCATT
*
10325448 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
10325513 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
10325578 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
10325643 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
10325708 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
10325773 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
10325820 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
10325885 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
10325950 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
10326015 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
10326080 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
10326145 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
10326192 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
10326257 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
10326322 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
10326361 TGTTTCAATT
Statistics
Matches: 540, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
372 540 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (372 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:10326475 original size:24 final size:24
Alignment explanation
Indices: 10326448--10326515 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
10326438 ATTATTATTG
*
10326448 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
10326472 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
10326496 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
10326516 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:10326736 original size:15 final size:15
Alignment explanation
Indices: 10326692--10326747 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
10326682 AACGACATGT
10326692 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
10326708 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
10326721 ATATTATTTAATTAA
1 ATATTATTTAATTAA
10326736 ATATTATTTAAT
1 ATATTATTTAAT
10326748 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:10326864 original size:9 final size:9
Alignment explanation
Indices: 10326852--10327076 Score: 152
Period size: 9 Copynumber: 24.6 Consensus size: 9
10326842 TATTTGATAT
*
10326852 CATAATTTA
1 CATAACTTA
10326861 CATAACTTA
1 CATAACTTA
* *
10326870 TATAACATA
1 CATAACTTA
*
10326879 TATAACTTA
1 CATAACTTA
10326888 CATAACTTA
1 CATAACTTA
10326897 CATAAC-TA
1 CATAACTTA
10326905 CATAACTTA
1 CATAACTTA
*
10326914 TATAACTTA
1 CATAACTTA
*
10326923 TATAACTTA
1 CATAACTTA
* *
10326932 GATAA-ATA
1 CATAACTTA
*
10326940 TATAACTTA
1 CATAACTTA
10326949 CATAACTTA
1 CATAACTTA
10326958 CATAATACTTA
1 CAT-A-ACTTA
* *
10326969 AATATATTTTATA
1 CATA-A--CT-TA
*
10326982 TCATAATTTA
1 -CATAACTTA
10326992 CATAACTTA
1 CATAACTTA
10327001 CATAACTTA
1 CATAACTTA
*
10327010 TATAACTTA
1 CATAACTTA
* *
10327019 GATAA-ATA
1 CATAACTTA
* *
10327027 TATAATTTA
1 CATAACTTA
*
10327036 CATAA-ATA
1 CATAACTTA
* * *
10327044 TATATCATA
1 CATAACTTA
*
10327053 TCATAAATTA
1 -CATAACTTA
10327063 CATAACTTA
1 CATAACTTA
10327072 CATAA
1 CATAA
10327077 TACTTAAATA
Statistics
Matches: 176, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
8 25 0.14
9 124 0.70
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:10326908 original size:44 final size:44
Alignment explanation
Indices: 10326852--10327076 Score: 174
Period size: 44 Copynumber: 5.1 Consensus size: 44
10326842 TATTTGATAT
* *
10326852 CATAATTTACATAACTTATATAACATATATAACTTACATAACTTA
1 CATAACTTACATAACTTATATAACATATATAACTTACATAA-ATA
* *
10326897 CATAAC-TACATAACTTATATAACTTATATAACTTAGATAAATA
1 CATAACTTACATAACTTATATAACATATATAACTTACATAAATA
* * * * **
10326940 TATAACTTACATAACTTACAT-A-ATACT-TAAATATA-TTTTATA
1 CATAACTTACATAACTTATATAACATA-TATAACT-TACATAAATA
* * * *
10326982 TCATAATTTACATAACTTACATAACTTATATAACTTAGATAAATA
1 -CATAACTTACATAACTTATATAACATATATAACTTACATAAATA
* * * * * *
10327027 TATAATTTACATAA-ATATATATCATATCATAAATTACATAACTTA
1 CATAACTTACATAACTTATATAACATAT-ATAACTTACATAA-ATA
10327072 CATAA
1 CATAA
10327077 TACTTAAATA
Statistics
Matches: 143, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
42 10 0.07
43 39 0.27
44 73 0.51
45 21 0.15
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (44 bp):
CATAACTTACATAACTTATATAACATATATAACTTACATAAATA
Found at i:10326917 original size:35 final size:35
Alignment explanation
Indices: 10326852--10327076 Score: 197
Period size: 35 Copynumber: 6.4 Consensus size: 35
10326842 TATTTGATAT
* * *
10326852 CATAATTTACATAACTTATATAACATATATAACTTA
1 CATAACTTACATAA-ATATATAACTTATATAACTTA
* *
10326888 CATAACTTACATAACTACATAACTTATATAACTTA
1 CATAACTTACATAAATATATAACTTATATAACTTA
* * *
10326923 TATAACTTAGATAAATATATAACTTACATAACTTA
1 CATAACTTACATAAATATATAACTTATATAACTTA
* ** *
10326958 CATAA--TACTTAAATATAT-TTTATATCATAATTTA
1 CATAACTTACATAAATATATAACT-TAT-ATAACTTA
* * *
10326992 CATAACTTACATAACTTATATAACTTAGATAA-ATA
1 CATAACTTACATAA-ATATATAACTTATATAACTTA
* * * * *
10327027 TATAATTTACATAAATATATATCATATCATAAATTA
1 CATAACTTACATAAATATATAACTTAT-ATAACTTA
10327063 CATAACTTACATAA
1 CATAACTTACATAA
10327077 TACTTAAATA
Statistics
Matches: 150, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
32 1 0.01
33 13 0.09
34 21 0.14
35 70 0.47
36 37 0.25
37 7 0.05
38 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (35 bp):
CATAACTTACATAAATATATAACTTATATAACTTA
Found at i:10327006 original size:61 final size:62
Alignment explanation
Indices: 10326861--10327076 Score: 183
Period size: 61 Copynumber: 3.5 Consensus size: 62
10326851 TCATAATTTA
* *
10326861 CATAACTTATATAACATATATAACTTACATAACTTACATAACTACATAACTTATATAACTTAT
1 CATAACTTACATAACATATATAACTTACATAACTTACATAACTACATAAATTATATAAC-TAT
* * * *
10326924 -ATAACTTAGATAA-ATATATAACTTACATAACTTACATAA-TACTTAAATATATTTTA-TAT
1 CATAACTTACATAACATATATAACTTACATAACTTACATAACTACATAAAT-TATATAACTAT
* * * * * * * * * *
10326983 CATAATTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATAT
1 CATAACTTACATAACATATATAACTTACATAACTTACATAACTACATAAATTATATAACTAT
* * *
10327045 -ATATCATATCATAA-ATTACATAACTTACATAA
1 CATAACTTA-CATAACA-TATATAACTTACATAA
10327077 TACTTAAATA
Statistics
Matches: 124, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
59 3 0.02
60 18 0.15
61 62 0.50
62 41 0.33
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (62 bp):
CATAACTTACATAACATATATAACTTACATAACTTACATAACTACATAAATTATATAACTAT
Found at i:10327124 original size:43 final size:45
Alignment explanation
Indices: 10327028--10327126 Score: 125
Period size: 43 Copynumber: 2.3 Consensus size: 45
10327018 AGATAAATAT
* *
10327028 ATAATTTACATAAATATATATCATATCATAAATTACATAACTTAC
1 ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
* **
10327073 ATAA--TACTTAAATATATATCATATCATACATAAC-TAGTTTAC
1 ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
10327115 A-AATTTACTTAA
1 ATAATTTACTTAA
10327127 CTTACATAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
41 2 0.04
42 7 0.15
43 34 0.72
45 4 0.09
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (45 bp):
ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
Done.