Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 43 of 378
Found at i:10593911 original size:21 final size:21
Alignment explanation
Indices: 10593887--10593971 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
10593877 CATTATAGTT
*
10593887 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
10593908 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
* *
10593929 TATGAGCTAACTATGGTTTAAGATA
1 TATG-G-T--TTAGGGTTTAAGATA
10593954 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
10593972 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 32 0.63
22 1 0.02
23 2 0.04
24 1 0.02
25 15 0.29
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:10593946 original size:46 final size:46
Alignment explanation
Indices: 10593894--10593987 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
10593884 GTTTATGGTT
*
10593894 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGCTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGCTAAC
*
10593940 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGCTAAC
10593986 TA
1 TA
10593988 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.03, G:0.27, T:0.41
Consensus pattern (46 bp):
TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGCTAAC
Found at i:10593959 original size:14 final size:14
Alignment explanation
Indices: 10593894--10593962 Score: 57
Period size: 14 Copynumber: 4.6 Consensus size: 14
10593884 GTTTATGGTT
10593894 TATGGTTTAAGATA
1 TATGGTTTAAGATA
* * *
10593908 TATGGTTTAGGGTT
1 TATGGTTTAAGATA
* *
10593922 TAAGGTTTATGAGCTAA
1 TATGGTTTA--AGAT-A
10593939 CTATGGTTTAAGATA
1 -TATGGTTTAAGATA
10593954 TATGGTTTA
1 TATGGTTTA
10593963 GGGTTTAAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
14 28 0.67
15 1 0.02
16 5 0.12
18 8 0.19
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (14 bp):
TATGGTTTAAGATA
Found at i:10594144 original size:7 final size:7
Alignment explanation
Indices: 10594035--10594145 Score: 57
Period size: 7 Copynumber: 15.6 Consensus size: 7
10594025 TTATGATTAA
10594035 TTAGGGT
1 TTAGGGT
*
10594042 TTAATGG-
1 TT-AGGGT
10594049 TTAGGG-
1 TTAGGGT
*
10594055 TTAGAGT
1 TTAGGGT
*
10594062 TTAAGGT
1 TTAGGGT
*
10594069 GTAAGGGT
1 -TTAGGGT
*
10594077 TTGGGGT
1 TTAGGGT
*
10594084 TAAGGGT
1 TTAGGGT
*
10594091 TAAGGGT
1 TTAGGGT
*
10594098 TTAGAGT
1 TTAGGGT
*
10594105 TTAGTGT
1 TTAGGGT
10594112 TTATGGG-
1 TTA-GGGT
*
10594119 ATAGGGGT
1 TTA-GGGT
*
10594127 TAAGAGGT
1 TTAG-GGT
10594135 TTAGGGT
1 TTAGGGT
10594142 TTAG
1 TTAG
10594146 ATTAATTAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
6 8 0.10
7 53 0.68
8 17 0.22
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (7 bp):
TTAGGGT
Found at i:10594256 original size:22 final size:22
Alignment explanation
Indices: 10594231--10594288 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
10594221 AGTTTTAAGA
10594231 GGATAGGGGTTAGGCGTTAAAG
1 GGATAGGGGTTAGGCGTTAAAG
* *
10594253 GGATAAGGGTTAGGCGTTAAGG
1 GGATAGGGGTTAGGCGTTAAAG
*
10594275 GGATAGAGGTTAGG
1 GGATAGGGGTTAGG
10594289 GGTTTATGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.47, T:0.22
Consensus pattern (22 bp):
GGATAGGGGTTAGGCGTTAAAG
Found at i:10594299 original size:7 final size:7
Alignment explanation
Indices: 10594289--10594392 Score: 59
Period size: 7 Copynumber: 14.7 Consensus size: 7
10594279 AGAGGTTAGG
10594289 GGTTTAT
1 GGTTTAT
10594296 GGTTTAT
1 GGTTTAT
*
10594303 GAGTTAAT
1 G-GTTTAT
** *
10594311 ATTTTAA
1 GGTTTAT
10594318 GGTTTAT
1 GGTTTAT
*
10594325 GGATTAT
1 GGTTTAT
10594332 GGTTTAT
1 GGTTTAT
*
10594339 GGATTAT
1 GGTTTAT
*
10594346 -GTGTTAG
1 GGT-TTAT
*
10594353 GGTTTAA
1 GGTTTAT
*
10594360 GGTTTAG
1 GGTTTAT
*
10594367 GGGTTAT
1 GGTTTAT
* *
10594374 GTGTTAAG
1 G-GTTTAT
10594382 GGTTTA-
1 GGTTTAT
10594388 GGTTT
1 GGTTT
10594393 TAAGGGTTAA
Statistics
Matches: 72, Mismatches: 21, Indels: 9
0.71 0.21 0.09
Matches are distributed among these distances:
6 6 0.08
7 55 0.76
8 11 0.15
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:10594373 original size:28 final size:28
Alignment explanation
Indices: 10594332--10594401 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
10594322 TATGGATTAT
* *
10594332 GGTTTATGGATTATGTGTT-AGGGTTTAA
1 GGTTTAAGGGTTATGTGTTAAGGGTTT-A
*
10594360 GGTTTAGGGGTTATGTGTTAAGGGTTTA
1 GGTTTAAGGGTTATGTGTTAAGGGTTTA
10594388 GGTTTTAAGGGTTA
1 GG-TTTAAGGGTTA
10594402 AGGGATATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (28 bp):
GGTTTAAGGGTTATGTGTTAAGGGTTTA
Found at i:10594383 original size:15 final size:15
Alignment explanation
Indices: 10594342--10594400 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
10594332 GGTTTATGGA
10594342 TTATGTGTT-AGGGT
1 TTATGTGTTAAGGGT
* * *
10594356 TTAAG-GTTTAGGGG
1 TTATGTGTTAAGGGT
10594370 TTATGTGTTAAGGGT
1 TTATGTGTTAAGGGT
* *
10594385 TTAGGTTTTAAGGGT
1 TTATGTGTTAAGGGT
10594400 T
1 T
10594401 AAGGGATATG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.08
14 12 0.33
15 21 0.58
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.46
Consensus pattern (15 bp):
TTATGTGTTAAGGGT
Found at i:10594439 original size:36 final size:36
Alignment explanation
Indices: 10594349--10594439 Score: 121
Period size: 36 Copynumber: 2.5 Consensus size: 36
10594339 GGATTATGTG
* *
10594349 TTAGGGTTTAAGGTTTAGGGGTTATGTGTTAAGGGT
1 TTAGGGTTTAAGGTTTAAGGGATATGTGTTAAGGGT
* * *
10594385 TTAGGTTTTAAGGGTTAAGGGATATGTGTTATGGGT
1 TTAGGGTTTAAGGTTTAAGGGATATGTGTTAAGGGT
10594421 TTAGGGTTT-AGGATTTAAG
1 TTAGGGTTTAAGG-TTTAAG
10594440 ATTTAGGGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 3 0.06
36 44 0.94
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (36 bp):
TTAGGGTTTAAGGTTTAAGGGATATGTGTTAAGGGT
Found at i:10594776 original size:74 final size:75
Alignment explanation
Indices: 10594656--10594873 Score: 337
Period size: 68 Copynumber: 3.0 Consensus size: 75
10594646 TGGCTTCCAA
* *
10594656 ATTATAACAAATAAAAAT-AATATGAAAATTAAGAGATTAGTGGCG-TTTTTAAAAAAACACCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
10594719 AAAAAACACT
66 AAAAAACACT
* *
10594729 ATTATAACAAATAAAAATAAATATGAAAATTAAAAGATTAGTGGCGTTTTTTTAAAAAATGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
10594794 AAAAAACAC-
66 AAAAAACACT
10594803 --TAT----AATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
10594862 AAAAAACACT
66 AAAAAACACT
10594872 AT
1 AT
10594874 GAAAACGACA
Statistics
Matches: 134, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
68 63 0.47
72 3 0.02
73 18 0.13
74 26 0.19
75 24 0.18
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.27
Consensus pattern (75 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
AAAAAACACT
Found at i:10597010 original size:23 final size:22
Alignment explanation
Indices: 10596955--10597010 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
10596945 CTATTACGTA
*
10596955 GATATAACTGC-TTGGAGACAC
1 GATATAACTGCAGTGGAGACAC
***
10596976 GATATGTTTGCAAGTGGAGACAC
1 GATATAACTGC-AGTGGAGACAC
10596999 GATATAACTGCA
1 GATATAACTGCA
10597011 TAATTTGGCT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 17 0.65
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (22 bp):
GATATAACTGCAGTGGAGACAC
Found at i:10599271 original size:16 final size:17
Alignment explanation
Indices: 10599250--10599281 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10599240 ACTTGTGGGG
10599250 GAATATGGAG-TCAACT
1 GAATATGGAGTTCAACT
10599266 GAATATGGAGTTCAAC
1 GAATATGGAGTTCAAC
10599282 ATTTTGGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (17 bp):
GAATATGGAGTTCAACT
Found at i:10599668 original size:43 final size:43
Alignment explanation
Indices: 10599603--10599787 Score: 289
Period size: 43 Copynumber: 4.3 Consensus size: 43
10599593 GATCATTATT
* * * *
10599603 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
10599646 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
10599689 TTTAGCGGCGTTTGCCAAAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
10599732 TTTAGCGGCGTTTACGAAAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
10599775 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
10599788 TTTTCGAAAA
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 132 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:10601457 original size:15 final size:15
Alignment explanation
Indices: 10601439--10601467 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10601429 GACTCCATTT
10601439 TATTAGGATAATTAA
1 TATTAGGATAATTAA
10601454 TATTAGGATAATTA
1 TATTAGGATAATTA
10601468 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (15 bp):
TATTAGGATAATTAA
Found at i:10601471 original size:12 final size:13
Alignment explanation
Indices: 10601437--10601479 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 13
10601427 AAGACTCCAT
10601437 TTTATTAGGATAA
1 TTTATTAGGATAA
10601450 TTAATATTAGGATAA
1 TT--TATTAGGATAA
*
10601465 -TTATTAGGATTA
1 TTTATTAGGATAA
10601477 TTT
1 TTT
10601480 CAATTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 10 0.38
13 4 0.15
14 1 0.04
15 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TTTATTAGGATAA
Found at i:10601512 original size:10 final size:10
Alignment explanation
Indices: 10601493--10601524 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
10601483 TTTTAAAATT
10601493 TTAT-TTTAA
1 TTATCTTTAA
10601502 TTATCTTTAA
1 TTATCTTTAA
10601512 TTATCTTTAA
1 TTATCTTTAA
10601522 TTA
1 TTA
10601525 ATTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:10602115 original size:19 final size:20
Alignment explanation
Indices: 10602087--10602125 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
10602077 TGGAAGCTGG
*
10602087 AATCTTGCCACATAA-AAAC
1 AATCTCGCCACATAAGAAAC
10602106 AATCTCGCCACATAAGAAAC
1 AATCTCGCCACATAAGAAAC
10602126 TTTCTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.46, C:0.28, G:0.08, T:0.18
Consensus pattern (20 bp):
AATCTCGCCACATAAGAAAC
Found at i:10606695 original size:10 final size:10
Alignment explanation
Indices: 10606680--10606739 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
10606670 TAATTTTAGG
10606680 ATTTAT-TTT
1 ATTTATCTTT
10606689 CATTTATCTTT
1 -ATTTATCTTT
10606700 ATTTATCTTT
1 ATTTATCTTT
*
10606710 AATTATCTTT
1 ATTTATCTTT
10606720 ATTTAT-TTGT
1 ATTTATCTT-T
10606730 ATTTATCTTT
1 ATTTATCTTT
10606740 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:10607431 original size:17 final size:18
Alignment explanation
Indices: 10607399--10607432 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10607389 TTTTCCTTAT
10607399 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
10607417 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
10607433 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:10610875 original size:21 final size:20
Alignment explanation
Indices: 10610843--10610881 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10610833 ATAAATAATA
*
10610843 TAAACAAATCAAATTTGAAT
1 TAAACAAATCAAAATTGAAT
*
10610863 TAAATCAATTCAAAATTGA
1 TAAA-CAAATCAAAATTGA
10610882 TTCAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
TAAACAAATCAAAATTGAAT
Found at i:10619906 original size:17 final size:17
Alignment explanation
Indices: 10619884--10619920 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
10619874 CTAAATAAGA
10619884 AAACATCTTAGAATAAT
1 AAACATCTTAGAATAAT
10619901 AAACATCTTAGAATAAT
1 AAACATCTTAGAATAAT
10619918 AAA
1 AAA
10619921 GAATACAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (17 bp):
AAACATCTTAGAATAAT
Found at i:10623786 original size:19 final size:19
Alignment explanation
Indices: 10623762--10623799 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10623752 ATGAAAATAA
*
10623762 AACAAAATTTAGGGATTTT
1 AACAAAATTCAGGGATTTT
10623781 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
10623800 TCTTATATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:10632150 original size:24 final size:24
Alignment explanation
Indices: 10632105--10632157 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
10632095 TATAATTTAT
10632105 TTATTAAAAAACTATACATATATTA
1 TTATTAAAAAAC-ATACATATATTA
* *
10632130 TTATTAAAAATAC-TACTTATATTT
1 TTATTAAAAA-ACATACATATATTA
10632154 TTAT
1 TTAT
10632158 CATATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 13 0.52
25 10 0.40
26 2 0.08
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATTAAAAAACATACATATATTA
Found at i:10632268 original size:13 final size:13
Alignment explanation
Indices: 10632240--10632292 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 13
10632230 ATTATCTTAC
*
10632240 ATTTTAAATATATT
1 ATTTTATAT-TATT
10632254 ATTTTATATTATT
1 ATTTTATATTATT
10632267 ATTATTTCATATTATT
1 A-T-TTT-ATATTATT
10632283 ATTTATATAT
1 ATTT-TATAT
10632293 GGTTATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 5 0.15
14 15 0.44
15 5 0.15
16 9 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTATATTATT
Found at i:10632271 original size:16 final size:16
Alignment explanation
Indices: 10632250--10632285 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
10632240 ATTTTAAATA
*
10632250 TATTATTTTATATTAT
1 TATTATTTCATATTAT
10632266 TATTATTTCATATTAT
1 TATTATTTCATATTAT
10632282 TATT
1 TATT
10632286 TATATATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:10632338 original size:24 final size:23
Alignment explanation
Indices: 10632311--10632368 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 23
10632301 TATTTGTGCT
10632311 TATATTATATATTAATATATATAC
1 TATATTATATATT-ATATATATAC
* *
10632335 TATA-CAT-TATT-TTTATATAC
1 TATATTATATATTATATATATAC
10632355 -ATATTATATATTAT
1 TATATTATATATTAT
10632369 TCTAGATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 4 0.14
22 5 0.18
23 2 0.07
24 4 0.14
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (23 bp):
TATATTATATATTATATATATAC
Found at i:10632369 original size:24 final size:25
Alignment explanation
Indices: 10632311--10632369 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
10632301 TATTTGTGCT
*
10632311 TATATTATATATTAATATATATACTA
1 TATATTAT-TATTAATATACATACTA
* * *
10632337 TACATTATT-TTTATATACATATTA
1 TATATTATTATTAATATACATACTA
10632361 TATATTATT
1 TATATTATT
10632370 CTAGATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 20 0.71
25 1 0.04
26 7 0.25
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATTATTATTAATATACATACTA
Found at i:10632399 original size:20 final size:19
Alignment explanation
Indices: 10632342--10632412 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
10632332 TACTATACAT
10632342 TATTTTTATATACATATTATA
1 TATTTTT-TATAC-TATTATA
* * * *
10632363 TATTATTCTAGATTATTATGT
1 TATT-TTTTATACTATTAT-A
10632384 TATTTTTTATACTATTATA
1 TATTTTTTATACTATTATA
10632403 TATTTTTTAT
1 TATTTTTTAT
10632413 CCGTATATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 10 0.25
20 17 0.43
21 11 0.28
22 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (19 bp):
TATTTTTTATACTATTATA
Found at i:10632924 original size:34 final size:34
Alignment explanation
Indices: 10632872--10632949 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
10632862 TGTACATTGA
* * *
10632872 TATTGTATTACTTTTTTTTTTGTATGTCATGCAG
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAG
*
10632906 TATTTTATTACTTCTTTTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAG
*
10632940 TATTTAATTA
1 TATTTTATTA
10632950 TTGCAATGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.60
Consensus pattern (34 bp):
TATTTTATTACTTCTTTTTTTGTATATCATGCAG
Found at i:10636501 original size:15 final size:15
Alignment explanation
Indices: 10636465--10636514 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
10636455 GATATTCTTT
10636465 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
10636479 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
10636495 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
10636508 TTTGCAT
1 TTTGCAT
10636515 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:10645306 original size:212 final size:210
Alignment explanation
Indices: 10644529--10645309 Score: 1400
Period size: 210 Copynumber: 3.7 Consensus size: 210
10644519 TCATCGGGGT
10644529 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
*
10644594 TTGGCTTTCACGTGTTTACGATGAAGCAAATGTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
* *
10644659 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTTACCTTCAGA
10644724 TTTTTACGCTGAAGC
196 TTTTTACGCTGAAGC
10644739 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
* * *
10644804 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGTATTGTTAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
*
10644869 ACAAATCGAAGTCTAGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTTACCTTCAGA
10644934 TTTTTACGCTGAAGC
196 TTTTTACGCTGAAGC
*
10644949 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAACAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
* *
10645014 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
*
10645079 ACAAATCGAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTCACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTTACCTTCAGA
*
10645144 TTTTTACGTTGAAGC
196 TTTTTACGCTGAAGC
* * *
10645159 AGATCCAAGATGACAAATCTTATCTCTCTGTATTCAAAGCAGGGAGCAGATCGAAGATATAGCTG
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTC--GGCGGGGAGCAGATCGAAGATATAGCTG
*
10645224 ATTTGGCTTTCACTTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGA
64 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGA
10645289 GAACAAATCGAAGTCTGGCAT
129 GAACAAATCGAAGTCTGGCAT
10645310 CTCTACATTC
Statistics
Matches: 550, Mismatches: 19, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
210 442 0.80
212 108 0.20
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (210 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTTACCTTCAGA
TTTTTACGCTGAAGC
Found at i:10647327 original size:24 final size:25
Alignment explanation
Indices: 10647281--10647334 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
10647271 TATAATTTAT
10647281 TTATTAAAAATACTATACATATATTA
1 TTATTAAAAATAC-ATACATATATTA
* *
10647307 TTATTAAAAATAC-TACTTATATTT
1 TTATTAAAAATACATACATATATTA
10647331 TTAT
1 TTAT
10647335 CATATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.50
26 13 0.50
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTAAAAATACATACATATATTA
Found at i:10647446 original size:16 final size:15
Alignment explanation
Indices: 10647417--10647462 Score: 67
Period size: 16 Copynumber: 3.0 Consensus size: 15
10647407 ATTATCTTAC
10647417 ATTTTAATTA-TATT
1 ATTTTAATTATTATT
10647431 ATTTTATATTATTATT
1 ATTTTA-ATTATTATT
10647447 ATTTTACATTATTATT
1 ATTTTA-ATTATTATT
10647463 TATATATGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 6 0.21
15 4 0.14
16 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTAATTATTATT
Found at i:10647524 original size:24 final size:24
Alignment explanation
Indices: 10647497--10647548 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
10647487 TTATATTATA
*
10647497 TATTAATATATATATACTATACAT
1 TATTAATATATACATACTATACAT
** * *
10647521 TATTTTTATATACATATTATATAT
1 TATTAATATATACATACTATACAT
10647545 TATT
1 TATT
10647549 CTAGATTATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTAATATATACATACTATACAT
Found at i:10647591 original size:19 final size:19
Alignment explanation
Indices: 10647521--10647593 Score: 56
Period size: 22 Copynumber: 3.5 Consensus size: 19
10647511 TACTATACAT
10647521 TATTTTTATATACATATTATA
1 TATTTTT-TATAC-TATTATA
* * *
10647542 TATTATTCTAGATTATTATGTTA
1 TATT-TTTTATACTATTA---TA
*
10647565 TTTTTTTTATACTATTATA
1 TATTTTTTATACTATTATA
10647584 TATTTTTTAT
1 TATTTTTTAT
10647594 CCGTATATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 11 0.28
20 5 0.12
21 7 0.17
22 12 0.30
23 5 0.12
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTTTTTATACTATTATA
Found at i:10648096 original size:33 final size:34
Alignment explanation
Indices: 10648054--10648130 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
10648044 TGTACATTGA
* *
10648054 TATTGTATTACTT-TTTTTTTGTATGTCATGCAC
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAC
*
10648087 TATTTTATTACTTCTTTTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAC
*
10648121 TATTTAATTA
1 TATTTTATTA
10648131 TTGCAATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 12 0.31
34 27 0.69
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.60
Consensus pattern (34 bp):
TATTTTATTACTTCTTTTTTTGTATATCATGCAC
Found at i:10649678 original size:19 final size:19
Alignment explanation
Indices: 10649654--10649691 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10649644 ATGAAAATAA
10649654 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
10649673 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
10649692 TCTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:10653811 original size:27 final size:27
Alignment explanation
Indices: 10653749--10653859 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
10653739 AGCATGGCTG
* *
10653749 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
10653775 CCAAATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
10653803 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
10653830 CCAGATCA-ATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
10653856 CCAG
1 CCAG
10653860 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 24 0.34
27 34 0.48
28 13 0.18
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:10653855 original size:53 final size:54
Alignment explanation
Indices: 10653749--10653859 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 54
10653739 AGCATGGCTG
* *
10653749 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAAAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAAAGCCA
* * * *
10653803 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CA-ATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAAAGCCA
10653856 CCAG
1 CCAG
10653860 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 20 0.40
54 13 0.26
55 17 0.34
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAAAGCCA
Found at i:10659785 original size:20 final size:20
Alignment explanation
Indices: 10659757--10659798 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
10659747 AAATAAACAC
* *
10659757 ATAATTATTCATCTAATATT
1 ATAACTATTCAACTAATATT
10659777 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
10659797 AT
1 AT
10659799 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:10667659 original size:20 final size:18
Alignment explanation
Indices: 10667622--10667659 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
10667612 ATAATGCAAT
10667622 TTATATTAATTAAAATTA
1 TTATATTAATTAAAATTA
10667640 TTATATTATATTATAAATTA
1 TTATATTA-ATTA-AAATTA
10667660 AATCAAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATATTAATTAAAATTA
Found at i:10667785 original size:3 final size:3
Alignment explanation
Indices: 10667777--10667823 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
10667767 ATGAATTAAA
*
10667777 TAT TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAT TAAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T-AT TAT TAT
10667822 TA
1 TA
10667824 ACTAATACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 29 0.76
4 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:10668903 original size:23 final size:23
Alignment explanation
Indices: 10668877--10668965 Score: 124
Period size: 23 Copynumber: 3.9 Consensus size: 23
10668867 CTGAGTGCCG
**
10668877 TTCTGGTGCATTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
10668900 TTCTGGTGTGTTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
*
10668923 TTCTGGTGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
* * *
10668946 TTTTGGTTTGTTTGGTTGGA
1 TTCTGGTGTGTTTGGGTGGA
10668966 ATCCGTGTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.09, C:0.04, G:0.36, T:0.51
Consensus pattern (23 bp):
TTCTGGTGTGTTTGGGTGGATTA
Found at i:10670523 original size:44 final size:46
Alignment explanation
Indices: 10670402--10670524 Score: 119
Period size: 48 Copynumber: 2.7 Consensus size: 46
10670392 CATGATATAC
* * * * *
10670402 ATAACATATATAA-AAATAAATAAATATTATATAATAAAATGTAAT
1 ATAATATATATAATTAATAAATATATAATATAAAATAAAATGTAAT
* * *
10670447 ATAAATATATAAGAATT-ATAATAGATATAATATAAAATAACATGTAA-
1 AT-AATATAT-ATAATTAATAA-ATATATAATATAAAATAAAATGTAAT
10670494 AT-ATATATATAATTAATAAATATATAATATA
1 ATAATATATATAATTAATAAATATATAATATA
10670525 TGTGAAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
44 16 0.25
45 12 0.19
46 6 0.10
47 9 0.14
48 20 0.32
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (46 bp):
ATAATATATATAATTAATAAATATATAATATAAAATAAAATGTAAT
Found at i:10670538 original size:18 final size:18
Alignment explanation
Indices: 10670515--10670580 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
10670505 ATTAATAAAT
*
10670515 ATATAATATATGTGAAAA
1 ATATAATATATATGAAAA
10670533 ATATAATAATATAT-AAAA
1 ATATAAT-ATATATGAAAA
* *
10670551 ATAGTGATA-ATTTGAGAAA
1 ATA-TAATATATATGA-AAA
*
10670570 ATATTATATAT
1 ATATAATATAT
10670581 TATACATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 3 0.08
18 20 0.51
19 16 0.41
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (18 bp):
ATATAATATATATGAAAA
Found at i:10672484 original size:119 final size:119
Alignment explanation
Indices: 10672263--10673503 Score: 2061
Period size: 119 Copynumber: 10.4 Consensus size: 119
10672253 CTTGAGTCTA
* * * * * ** * * * *
10672263 TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTTTTTATAAACACAAGAATA
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTG-TTCCTTGTAAGCACAAGGATG
* ** * * ***
10672328 CCAAATCATCTTGGATCTGTTTCAGCATAAACTTCTGAAGGT-TAGATTTGCTATA
65 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAA-GTCTAGATCTGCTGCC
* *
10672383 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
10672448 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
**
10672502 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
10672567 CAAATCATCTTGGATCTGCTTCAATATAAACATCTAAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
10672621 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
**
10672686 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGTA
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
* *
10672740 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
10672805 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTACTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
* * *
10672859 TTTGAGAACATCTGAGAGTCGAATCTGCTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
10672924 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
10672978 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
10673043 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
*
10673097 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
**
10673162 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGTA
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
* * *
10673216 TTTGAGAACGTCTGAGAGTCAAATATACTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
10673281 CAAATCATCTTGGATCTGTTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
10673335 TTTGAGAACGTCTGGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
1 TTTGAGAACGTCT-GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
*
10673400 CCAAATCATCTTGGATCTCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTACC
65 CCAAATCATCTTGGA--TCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
*
10673457 TTTGAGAACGTCTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCC
10673504 CAAATCATCT
Statistics
Matches: 1058, Mismatches: 59, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
118 2 0.00
119 872 0.82
120 100 0.09
121 33 0.03
122 51 0.05
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGCC
Found at i:10685644 original size:44 final size:46
Alignment explanation
Indices: 10685523--10685645 Score: 119
Period size: 48 Copynumber: 2.7 Consensus size: 46
10685513 CATGATATAC
* * * * *
10685523 ATAACATATATAA-AAATAAATAAATATTATATAATAAAATGTAAT
1 ATAATATATATAATTAATAAATATATAATATAAAATAAAATGTAAT
* * *
10685568 ATAAATATATAAGAATT-ATAATAGATATAATATAAAATAACATGTAA-
1 AT-AATATAT-ATAATTAATAA-ATATATAATATAAAATAAAATGTAAT
10685615 AT-ATATATATAATTAATAAATATATAATATA
1 ATAATATATATAATTAATAAATATATAATATA
10685646 TGTGAAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
44 16 0.25
45 12 0.19
46 6 0.10
47 9 0.14
48 20 0.32
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (46 bp):
ATAATATATATAATTAATAAATATATAATATAAAATAAAATGTAAT
Found at i:10685659 original size:18 final size:18
Alignment explanation
Indices: 10685636--10685701 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
10685626 ATTAATAAAT
*
10685636 ATATAATATATGTGAAAA
1 ATATAATATATATGAAAA
10685654 ATATAATAATATAT-AAAA
1 ATATAAT-ATATATGAAAA
* *
10685672 ATAGTGATA-ATTTGAGAAA
1 ATA-TAATATATATGA-AAA
*
10685691 ATATTATATAT
1 ATATAATATAT
10685702 TATACATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 3 0.08
18 20 0.51
19 16 0.41
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (18 bp):
ATATAATATATATGAAAA
Found at i:10693927 original size:13 final size:13
Alignment explanation
Indices: 10693909--10693935 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10693899 GGGGTTGTTT
10693909 ATTAAACTAATTA
1 ATTAAACTAATTA
10693922 ATTAAACTAATTA
1 ATTAAACTAATTA
10693935 A
1 A
10693936 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:10693932 original size:9 final size:9
Alignment explanation
Indices: 10693920--10693953 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10693910 TTAAACTAAT
10693920 TAATTAAAC
1 TAATTAAAC
10693929 TAATTAAA-
1 TAATTAAAC
10693937 TAATTAAAC
1 TAATTAAAC
*
10693946 TAAGTAAA
1 TAATTAAA
10693954 GAGAAAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:10693942 original size:17 final size:17
Alignment explanation
Indices: 10693920--10693953 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10693910 TTAAACTAAT
*
10693920 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
10693937 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
10693954 GAGAAAAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:10696864 original size:6 final size:6
Alignment explanation
Indices: 10696855--10696899 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
10696845 TAATAAAATT
* * *
10696855 AAATGA AAATAA AAATAA AAAGAA GAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
10696900 GATAAGAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:10696885 original size:18 final size:17
Alignment explanation
Indices: 10696836--10696898 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 17
10696826 TATGCCTTTC
*
10696836 AAAAGAAAATAATAAAATT
1 AAAAGAAAAT-A-AAAATA
*
10696855 AAATGAAAATAAAAATA
1 AAAAGAAAATAAAAATA
10696872 AAAAGAAGAATAAAAATA
1 AAAAGAA-AATAAAAATA
*
10696890 AAAATAAAA
1 AAAAGAAAA
10696899 AGATAAGAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 13 0.33
18 17 0.44
19 9 0.23
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (17 bp):
AAAAGAAAATAAAAATA
Found at i:10702272 original size:13 final size:13
Alignment explanation
Indices: 10702254--10702280 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10702244 GAGGTTGTTT
10702254 ATTAAACTAATTA
1 ATTAAACTAATTA
10702267 ATTAAACTAATTA
1 ATTAAACTAATTA
10702280 A
1 A
10702281 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:10702277 original size:9 final size:9
Alignment explanation
Indices: 10702265--10702298 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10702255 TTAAACTAAT
10702265 TAATTAAAC
1 TAATTAAAC
10702274 TAATTAAA-
1 TAATTAAAC
10702282 TAATTAAAC
1 TAATTAAAC
*
10702291 TAAGTAAA
1 TAATTAAA
10702299 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:10702287 original size:17 final size:17
Alignment explanation
Indices: 10702265--10702298 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10702255 TTAAACTAAT
*
10702265 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
10702282 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
10702299 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:10706897 original size:20 final size:21
Alignment explanation
Indices: 10706872--10706912 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10706862 CTTAGTTCAT
10706872 ATCTAACT-AAGGAACAAAAC
1 ATCTAACTGAAGGAACAAAAC
* *
10706892 ATCTAATTGAAGTAACAAAAC
1 ATCTAACTGAAGGAACAAAAC
10706913 GTTTACATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.54, C:0.17, G:0.10, T:0.20
Consensus pattern (21 bp):
ATCTAACTGAAGGAACAAAAC
Found at i:10714018 original size:46 final size:47
Alignment explanation
Indices: 10713958--10714185 Score: 268
Period size: 46 Copynumber: 5.0 Consensus size: 47
10713948 TTTAACATGA
* * * * *
10713958 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* * * * * *
10714004 TGCTATAGTATCTTTTAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* * *
10714050 TGCCATGGTATCTTTCAACTATTGTCTTATTCA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* *
10714096 TGCTATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
*
10714142 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAG
10714186 AGAGCACACT
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 5 0.03
46 156 0.97
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
Found at i:10714116 original size:92 final size:92
Alignment explanation
Indices: 10713958--10714185 Score: 305
Period size: 92 Copynumber: 2.5 Consensus size: 92
10713948 TTTAACATGA
* * * * *
10713958 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCTATAGTATCTTTTAA
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCA-TTTCATATCAGGTTGCTATAGTATCTTTCAA
** * *
10714022 CCATGGTCTTATTCTTTTCATGTCACGT
65 CCATGGTCTTACACATTTCATATCACGT
* * *
10714050 TGCCATGGTATCTTTCAACTATTGTCTTATTCATTTCATATCAGGTTGCTATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCATATCAGGTTGCTATAGTATCTTTCAAC
*
10714115 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCACGT
* *
10714142 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCATATCAG
10714186 AGAGCACACT
Statistics
Matches: 118, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
91 4 0.03
92 114 0.97
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCATATCAGGTTGCTATAGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGT
Found at i:10716286 original size:14 final size:11
Alignment explanation
Indices: 10716250--10716281 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
10716240 CTTTATATAC
10716250 TAATAAAATAT
1 TAATAAAATAT
10716261 TAATAAAATAT
1 TAATAAAATAT
10716272 TAATAAAATA
1 TAATAAAATA
10716282 ATATTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:10717883 original size:30 final size:30
Alignment explanation
Indices: 10717849--10717906 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
10717839 CACGGCCATG
10717849 ACACACGGGCATGTGGACTACCCGTGTGTC
1 ACACACGGGCATGTGGACTACCCGTGTGTC
* *
10717879 ACACACGGGCATGTGGATTGCCCGTGTG
1 ACACACGGGCATGTGGACTACCCGTGTG
10717907 GAACTGCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGACTACCCGTGTGTC
Found at i:10719969 original size:11 final size:11
Alignment explanation
Indices: 10719949--10719987 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
10719939 AAATAGAACT
*
10719949 AAAAATAAAAG
1 AAAAAGAAAAG
10719960 AAAAAGAAAAAG
1 AAAAAG-AAAAG
10719972 AAAAAGAAAAG
1 AAAAAGAAAAG
10719983 CAAAA
1 -AAAA
10719988 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:10719987 original size:6 final size:6
Alignment explanation
Indices: 10719955--10719981 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10719945 AACTAAAAAT
10719955 AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAA
10719982 GCAAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:10719987 original size:12 final size:11
Alignment explanation
Indices: 10719949--10719987 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10719939 AAATAGAACT
*
10719949 AAAAATAAAAG
1 AAAAAGAAAAG
10719960 AAAAAGAAAAAG
1 AAAAAG-AAAAG
10719972 AAAAAGAAAAG
1 AAAAAGAAAAG
*
10719983 CAAAA
1 AAAAA
10719988 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:10721114 original size:27 final size:27
Alignment explanation
Indices: 10721076--10721134 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
10721066 CGCTGAGTAT
10721076 ACACTCAGTGGTATTTCTATAATCTGA
1 ACACTCAGTGGTATTTCTATAATCTGA
10721103 ACACTCAGTGGTATTTCTATAATCTGA
1 ACACTCAGTGGTATTTCTATAATCTGA
10721130 ACACT
1 ACACT
10721135 TAAACAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (27 bp):
ACACTCAGTGGTATTTCTATAATCTGA
Found at i:10721336 original size:18 final size:18
Alignment explanation
Indices: 10721271--10721465 Score: 106
Period size: 18 Copynumber: 10.3 Consensus size: 18
10721261 AGCAATTAAT
*
10721271 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
10721291 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* *
10721308 CAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
*
10721326 CAGTCAGTTATTC-GATAA
1 CAATCAGTTATTCAG-TAA
* *
10721344 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
*
10721362 TAATCAGTTATTCAGTATCAA
1 CAATCAGTTATTCAG--T-AA
* *
10721383 TCAATTGATTGGTTATCCAGTAA
1 -CAA-TCA---GTTATTCAGTAA
* *
10721406 CAGTCAATTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* * *
10721424 AAATCAGATATACAGTAA
1 CAATCAGTTATTCAGTAA
* *
10721442 CAATTAAATTATTCAGTAA
1 CAA-TCAGTTATTCAGTAA
10721461 CAATC
1 CAATC
10721466 GATCTTTCTA
Statistics
Matches: 129, Mismatches: 34, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
17 14 0.11
18 71 0.55
19 14 0.11
20 9 0.07
21 4 0.03
22 4 0.03
23 4 0.03
24 1 0.01
26 8 0.06
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.33
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:10731241 original size:26 final size:26
Alignment explanation
Indices: 10731182--10731244 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
10731172 TCACATATAT
10731182 TCATAAAT-CAATTCAATATAATCAA
1 TCATAAATCCAATTCAATATAATCAA
* *
10731207 T-ATTCAATCCAATTCAA-ATAATCATC
1 TCA-TAAATCCAATTCAATATAATCA-A
10731233 TCATAAATCCAA
1 TCATAAATCCAA
10731245 CAATTTAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 1 0.03
25 12 0.39
26 17 0.55
27 1 0.03
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.32
Consensus pattern (26 bp):
TCATAAATCCAATTCAATATAATCAA
Found at i:10731782 original size:16 final size:17
Alignment explanation
Indices: 10731765--10731826 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 17
10731755 TATTTATCAT
10731765 ATAAATATCTTATAAT-
1 ATAAATATCTTATAATA
* *
10731781 ATAATTAT-TTAT-TTA
1 ATAAATATCTTATAATA
10731796 ATAAATATCTTTTATAAATA
1 ATAAATATC--TTAT-AATA
10731816 ATAAATATCTT
1 ATAAATATCTT
10731827 TTATACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 1 0.03
15 11 0.31
16 7 0.19
18 6 0.17
20 11 0.31
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAAATATCTTATAATA
Found at i:10731817 original size:20 final size:20
Alignment explanation
Indices: 10731794--10731831 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
10731784 ATTATTTATT
10731794 TAATAAATATCTTTTATAAA
1 TAATAAATATCTTTTATAAA
10731814 TAATAAATATCTTTTATA
1 TAATAAATATCTTTTATA
10731832 CATGTATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATAAATATCTTTTATAAA
Found at i:10737223 original size:16 final size:17
Alignment explanation
Indices: 10737196--10737230 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
10737186 AAGTAATTTA
*
10737196 AAAAGATAAATAAAGAT
1 AAAAGATAAATAAAAAT
10737213 AAAAG-TAAATAAAAAT
1 AAAAGATAAATAAAAAT
10737229 AA
1 AA
10737231 TAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
AAAAGATAAATAAAAAT
Found at i:10752533 original size:16 final size:16
Alignment explanation
Indices: 10752482--10752551 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 16
10752472 CACTTTAATA
*
10752482 TTAAATTAATATAATAC
1 TTAAATTAATAT-ATAT
10752499 TTAAGTATTAGAT-TATAT
1 TTAA--ATTA-ATATATAT
10752517 TTAATATTAA-ATATA-
1 TTAA-ATTAATATATAT
10752532 TTAAATTAATATAATAT
1 TTAAATTAATAT-ATAT
10752549 TTA
1 TTA
10752552 CCTACAAGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
14 5 0.11
15 6 0.13
16 8 0.18
17 12 0.27
18 7 0.16
19 5 0.11
20 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (16 bp):
TTAAATTAATATATAT
Found at i:10756226 original size:22 final size:22
Alignment explanation
Indices: 10756198--10756243 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
10756188 TTGGAATTGT
10756198 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
10756220 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
10756242 AG
1 AG
10756244 TATTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (22 bp):
AGACACCATAATAATCTTTCTA
Found at i:10757535 original size:22 final size:22
Alignment explanation
Indices: 10757511--10757554 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
10757501 TATGAAGTAA
*
10757511 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
10757534 TTTCCAAAATTATATATTTTA
1 TTTACAAAATTATATATTTTA
10757555 GCATGTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:10770968 original size:40 final size:40
Alignment explanation
Indices: 10770883--10771033 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
10770873 AATTGAATGA
* * *
10770883 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
10770923 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
10770964 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
10771003 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
10771034 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:10771047 original size:40 final size:40
Alignment explanation
Indices: 10770920--10771049 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
10770910 ATGCTGGAAA
* * * *
10770920 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
10770960 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
10771000 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
10771040 TTATATCCGG
1 TTATATCCGG
10771050 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:10775106 original size:3 final size:3
Alignment explanation
Indices: 10775098--10775137 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
10775088 TATGAGAGTA
10775098 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
10775138 TATTAATATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10775837 original size:12 final size:12
Alignment explanation
Indices: 10775797--10775830 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
10775787 TTATCTACAA
*
10775797 TACAAATATAAG
1 TACAAATATAAC
10775809 TACAAA-ATAAC
1 TACAAATATAAC
10775820 TACAAATATAA
1 TACAAATATAA
10775831 TTCCAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (12 bp):
TACAAATATAAC
Found at i:10776321 original size:21 final size:20
Alignment explanation
Indices: 10776276--10776329 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
10776266 ATTTTTTAAC
*
10776276 AAAAATTGTA-AAAAAAATA
1 AAAAATTGTATAAATAAATA
10776295 AAAAATCT-TATAAATAAATA
1 AAAAAT-TGTATAAATAAATA
10776315 AATAAATTGTATAAA
1 AA-AAATTGTATAAA
10776330 GACCCAAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 8 0.27
20 12 0.40
21 10 0.33
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (20 bp):
AAAAATTGTATAAATAAATA
Found at i:10776561 original size:2 final size:2
Alignment explanation
Indices: 10776549--10776593 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
10776539 AGATCATTAA
10776549 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10776590 AT AT
1 AT AT
10776594 GTTTTATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10807853 original size:68 final size:68
Alignment explanation
Indices: 10807757--10807961 Score: 225
Period size: 68 Copynumber: 3.0 Consensus size: 68
10807747 AGTGTAAGTG
* * * *
10807757 TGAG-TATAGGAGTGTTCTCTAGCCAATGTGAGATTAAAATTAACTTTTAGTGAAAATAGTGTAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
10807821 AAA
66 AAA
* * *
10807824 TGAGCTATGGGAGTATTCTCTAGTCAATGT-AGAATAAAAATTAACTTTTGAATGAAAGTAGTGA
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAG-ATTAAAATTAACTTTT-AATGAAAATAGTGA
*
10807888 AGAAG
64 AGAAA
* * * * * * * * *
10807893 CGAGCTACAAGTGTATTCTCTAATCAATGTGAGATTAAATTTAAATTTTAATGAAAATTGCGAAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
10807958 AAA
66 AAA
10807961 T
1 T
10807962 TACACTTACT
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
67 6 0.05
68 52 0.46
69 52 0.46
70 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.32
Consensus pattern (68 bp):
TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
AAA
Found at i:10807914 original size:69 final size:68
Alignment explanation
Indices: 10807766--10807960 Score: 212
Period size: 69 Copynumber: 2.9 Consensus size: 68
10807756 GTGAGTATAG
* * * * *
10807766 GAGTGTTCTCTAGCCAATGTGAGATTAAAATTAACTTTTAGTGAAAATAGTGTAGAAATGAGCTA
1 GAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAGAAACGAGCTA
***
10807831 TGG
66 CAA
* * *
10807834 GAGTATTCTCTAGTCAATGT-AGAATAAAAATTAACTTTTGAATGAAAGTAGTGAAGAAGCGAGC
1 GAGTATTCTCTAGTCAATGTGAG-ATTAAAATTAACTTTT-AATGAAAATAGTGAAGAAACGAGC
10807898 TACAA
64 TACAA
* * * * * *
10807903 GTGTATTCTCTAATCAATGTGAGATTAAATTTAAATTTTAATGAAAATTGCGAAGAAA
1 GAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAGAAA
10807961 TTACACTTAC
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
67 2 0.02
68 48 0.46
69 52 0.50
70 2 0.02
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (68 bp):
GAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAGAAACGAGCTA
CAA
Found at i:10808127 original size:51 final size:51
Alignment explanation
Indices: 10808055--10808160 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
10808045 ATTTTTAATG
**
10808055 AAATAATGAAGAAGTGAGCTATAAGAGTATT-TCATAGTCAATGTGGAAATA
1 AAATAATGAAGAAGTGAGCTATAAGAGTATTCTC-TAGTCAACATGGAAATA
* * *
10808106 AAATAATTGAA-AAGTGTGCTATGAGAGTATTCTCTAGTCAACATGGAATTA
1 AAATAA-TGAAGAAGTGAGCTATAAGAGTATTCTCTAGTCAACATGGAAATA
10808157 AAAT
1 AAAT
10808161 TAACTTTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 42 0.88
52 6 0.12
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (51 bp):
AAATAATGAAGAAGTGAGCTATAAGAGTATTCTCTAGTCAACATGGAAATA
Found at i:10808342 original size:36 final size:36
Alignment explanation
Indices: 10808295--10808367 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
10808285 TATATATATA
10808295 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
10808331 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
10808367 T
1 T
10808368 CTAGAAAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (36 bp):
TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
Found at i:10812743 original size:2 final size:2
Alignment explanation
Indices: 10812736--10812763 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10812726 ATTGATTTTA
10812736 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10812764 GGTGCATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10813150 original size:2 final size:2
Alignment explanation
Indices: 10813143--10813174 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10813133 TTAAAACACA
10813143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10813175 GTTTATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10818072 original size:18 final size:18
Alignment explanation
Indices: 10818049--10818104 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
10818039 AAAAAAAGGA
10818049 AAATTAAATAATAAATTT
1 AAATTAAATAATAAATTT
10818067 AAATT--AT-A-AAATTT
1 AAATTAAATAATAAATTT
* *
10818081 ATATTCAAAAAAT-AATTT
1 AAATT-AAATAATAAATTT
10818099 AAATTA
1 AAATTA
10818105 TTCATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 2 0.07
18 15 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAAATAATAAATTT
Found at i:10820634 original size:40 final size:40
Alignment explanation
Indices: 10820579--10820658 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
10820569 GAAAAGAGAA
10820579 AGAAAAATTAAAGAACACATAAATTTTTACGAGGAAACCC
1 AGAAAAATTAAAGAACACATAAATTTTTACGAGGAAACCC
10820619 AGAAAAATTAAAGAACACATAAATTTTTACGAGGAAACCC
1 AGAAAAATTAAAGAACACATAAATTTTTACGAGGAAACCC
10820659 TTTCGGGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (40 bp):
AGAAAAATTAAAGAACACATAAATTTTTACGAGGAAACCC
Found at i:10823950 original size:12 final size:12
Alignment explanation
Indices: 10823929--10823962 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10823919 TATATTTTTT
*
10823929 AAAATTATATAA
1 AAAATAATATAA
10823941 AAAATAATATAA
1 AAAATAATATAA
*
10823953 AAATTAATAT
1 AAAATAATAT
10823963 GGGCTGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:10825910 original size:22 final size:22
Alignment explanation
Indices: 10825880--10825922 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10825870 TCTAATTATG
* *
10825880 AAATTTAAATATTAAAATAAAA
1 AAATATAAATATCAAAATAAAA
*
10825902 AAATATAAATATCAAAGTAAA
1 AAATATAAATATCAAAATAAA
10825923 CTATAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATATAAATATCAAAATAAAA
Found at i:10831953 original size:20 final size:19
Alignment explanation
Indices: 10831910--10831953 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
10831900 ACAATTAAAG
*
10831910 AAAA-CAAATAATAAATAA
1 AAAAGCAAATAAAAAATAA
10831928 ATAAAGCAAATAAAAAATGAA
1 A-AAAGCAAATAAAAAAT-AA
10831949 AAAAG
1 AAAAG
10831954 TCTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 3 0.14
20 15 0.68
21 3 0.14
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAGCAAATAAAAAATAA
Found at i:10841961 original size:7 final size:7
Alignment explanation
Indices: 10841949--10841974 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10841939 GTTATAAAGT
10841949 TTTATTC
1 TTTATTC
10841956 TTTATTC
1 TTTATTC
10841963 TTTATTC
1 TTTATTC
10841970 TTTAT
1 TTTAT
10841975 ATACATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTC
Found at i:10847907 original size:1 final size:1
Alignment explanation
Indices: 10847901--10847929 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
10847891 AAAGAGAAGC
10847901 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10847930 CTTCCCATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10851538 original size:108 final size:108
Alignment explanation
Indices: 10851425--10851628 Score: 338
Period size: 108 Copynumber: 1.9 Consensus size: 108
10851415 TGGACTGACG
*
10851425 GATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACTCATGACAATATATGATTGTATGA
1 GATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAA-ACCCATGACAATATATGATTGTATGA
*
10851489 ATGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGGTA
65 ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGGTA
* * *
10851533 GATCACGACATGAGAATGTGTTAGTCCATGTGGTTGAAACCCATGGCAATATATGATTGTATGAA
1 GATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATGACAATATATGATTGTATGAA
*
10851598 TGTTCATGGTGAAGCCTTCAATAATGTGTAG
66 TGTTCATGGTGAAGCCTGCAATAATGTGTAG
10851629 GTCAAACTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
108 87 0.98
109 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (108 bp):
GATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATGACAATATATGATTGTATGAA
TGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGGTA
Found at i:10851644 original size:108 final size:108
Alignment explanation
Indices: 10851425--10851653 Score: 325
Period size: 108 Copynumber: 2.1 Consensus size: 108
10851415 TGGACTGACG
*
10851425 GATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACTCATGACAATATATGATTGTATGAA
1 GATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGAA
* ** * * *
10851490 TGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGGTA
66 TGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGAA
* * *
10851533 GATCACGACATGAGAATGTGTTAGTCCATGTGGTTGAA-ACCCATGGCAATATATGATTGTATGA
1 GATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACCCATGACAATATATGATTGTATGA
* *
10851597 ATGTTCATGGTGAAGCCTTCAATAATGTGTAGGTCAAACTAGAA
65 ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGAA
*
10851641 GATCGCGACATGA
1 GATCACGACATGA
10851654 AATTATGTGC
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
108 105 0.98
109 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (108 bp):
GATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGAA
TGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGAA
Found at i:10851774 original size:29 final size:29
Alignment explanation
Indices: 10851737--10851799 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
10851727 ATTCTGTATG
*
10851737 TTTGCTTGTGCAGCGTGATTTGCTAAGAT
1 TTTGTTTGTGCAGCGTGATTTGCTAAGAT
*
10851766 TTTGTTTGTGTAGCGTGATTTGCTAAGAT
1 TTTGTTTGTGCAGCGTGATTTGCTAAGAT
10851795 TTTGT
1 TTTGT
10851800 GGCAAGTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.16, C:0.10, G:0.27, T:0.48
Consensus pattern (29 bp):
TTTGTTTGTGCAGCGTGATTTGCTAAGAT
Found at i:10852825 original size:42 final size:42
Alignment explanation
Indices: 10852778--10852861 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
10852768 TGAGATAGAC
10852778 AATACCCAGGAAAGAATCCACCTAGACTTCACCTATTATTAT
1 AATACCCAGGAAAGAATCCACCTAGACTTCACCTATTATTAT
10852820 AATACCCAGGAAAGAATCCACCTAGACTTCACCTATTATTAT
1 AATACCCAGGAAAGAATCCACCTAGACTTCACCTATTATTAT
10852862 GAATCTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (42 bp):
AATACCCAGGAAAGAATCCACCTAGACTTCACCTATTATTAT
Found at i:10855303 original size:36 final size:37
Alignment explanation
Indices: 10855256--10855329 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
10855246 CACACGAACC
10855256 TAACCATAAACGACAGT-AAAAAAGGTGTTAAAAAGA
1 TAACCATAAACGACAGTAAAAAAAGGTGTTAAAAAGA
*
10855292 TAACCATAAACGACAGTAAAAAAAGGTGTTAAAGAGA
1 TAACCATAAACGACAGTAAAAAAAGGTGTTAAAAAGA
10855329 T
1 T
10855330 TACAACAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 17 0.47
37 19 0.53
ACGTcount: A:0.54, C:0.11, G:0.18, T:0.18
Consensus pattern (37 bp):
TAACCATAAACGACAGTAAAAAAAGGTGTTAAAAAGA
Found at i:10858293 original size:6 final size:6
Alignment explanation
Indices: 10858275--10858331 Score: 78
Period size: 6 Copynumber: 9.5 Consensus size: 6
10858265 TAAGTCTAAG
* * * *
10858275 AAAATA ATAATA AACATA AACATA AAAATA AAAATA AAAATA GAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
10858323 AAAATA AAA
1 AAAATA AAA
10858332 CAAATAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:10859950 original size:5 final size:5
Alignment explanation
Indices: 10859940--10860055 Score: 55
Period size: 5 Copynumber: 23.2 Consensus size: 5
10859930 GAAGCAGAAT
* **
10859940 AATAA AATAA AATAA AAT-A AAGAA AATAA TAATTTT AATAA GAAT-A
1 AATAA AATAA AATAA AATAA AATAA AATAA -AA-TAA AATAA -AATAA
* * * * *
10859986 AATAG AA-AA TATAA AATAA CAA-AC AA-AA GATAA TAATAA GA-AA AATAA
1 AATAA AATAA AATAA AATAA -AATAA AATAA AATAA -AATAA AATAA AATAA
*
10860034 AGTAA AATAA AATAAA AATAA A
1 AATAA AATAA AAT-AA AATAA A
10860056 GAATTAAAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
4 15 0.18
5 48 0.59
6 18 0.22
7 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:10871089 original size:32 final size:33
Alignment explanation
Indices: 10871048--10871128 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
10871038 AGGGTGTGGC
*
10871048 CGTGTGGG-CCACACAGACTACGAAAAATTGGG
1 CGTGTGGGCCCACACAGACAACGAAAAATTGGG
* * ** *
10871080 CGTGTGGGCCCACATAGACAAGGCCAATTTGGG
1 CGTGTGGGCCCACACAGACAACGAAAAATTGGG
10871113 CGTGTGGGCCCACACA
1 CGTGTGGGCCCACACA
10871129 AGCATGTAGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 8 0.20
33 33 0.80
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.16
Consensus pattern (33 bp):
CGTGTGGGCCCACACAGACAACGAAAAATTGGG
Found at i:10881428 original size:20 final size:21
Alignment explanation
Indices: 10881383--10881447 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
10881373 AATGATGATG
* *
10881383 TTAATGATATTTTATGATTA-T
1 TTAATGAGATATTAT-ATTATT
*
10881404 TTAATTAGATA-TATATTATT
1 TTAATGAGATATTATATTATT
*
10881424 TTAATGAGATATTTTATTATT
1 TTAATGAGATATTATATTATT
10881445 TTA
1 TTA
10881448 TTATTATTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 14 0.38
21 19 0.51
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (21 bp):
TTAATGAGATATTATATTATT
Found at i:10881440 original size:18 final size:20
Alignment explanation
Indices: 10881399--10881447 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
10881389 ATATTTTATG
*
10881399 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
*
10881418 ATTATTTTAATGAGATATTTT
1 ATTATTTTAATGAGATA-TAT
10881439 ATTATTTTA
1 ATTATTTTA
10881448 TTATTATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 4 0.15
20 11 0.42
21 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:10881451 original size:3 final size:3
Alignment explanation
Indices: 10881433--10881481 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
10881423 TTTAATGAGA
*
10881433 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
10881478 TAT T
1 TAT T
10881482 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:10881453 original size:11 final size:11
Alignment explanation
Indices: 10881437--10881475 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
10881427 ATGAGATATT
10881437 TTATTATTTTA
1 TTATTATTTTA
*
10881448 TTATTATTTCA
1 TTATTATTTTA
10881459 TTATTATTTTA
1 TTATTATTTTA
10881470 TTATTA
1 TTATTA
10881476 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:10881461 original size:19 final size:19
Alignment explanation
Indices: 10881433--10881474 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10881423 TTTAATGAGA
*
10881433 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
10881452 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
10881471 TATT
1 TATT
10881475 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:10883554 original size:23 final size:24
Alignment explanation
Indices: 10883508--10883554 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
10883498 TTAGCCCTCT
* *
10883508 CGAGCTTCCCGTTTTATGGTTCTTG
1 CGAGCTTCCCG-TTTATAGCTCTTG
10883533 CGAGCTTCCCG-TTATAGCTCTT
1 CGAGCTTCCCGTTTATAGCTCTT
10883555 CGGAGCGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
25 11 0.55
ACGTcount: A:0.11, C:0.28, G:0.21, T:0.40
Consensus pattern (24 bp):
CGAGCTTCCCGTTTATAGCTCTTG
Found at i:10883662 original size:23 final size:23
Alignment explanation
Indices: 10883628--10883757 Score: 93
Period size: 23 Copynumber: 5.5 Consensus size: 23
10883618 CCCGATATAT
*
10883628 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
* *
10883651 GGCTTTTTGTGAGCTTCTCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
** * *
10883674 GTGCTCCCT-TGAACTTCCTGATATA
1 G-GCTCTTTGTGAGCTTCCCG--ATA
* * *
10883699 TGACTATCTG-GAGCTTCCCGATA
1 -GGCTCTTTGTGAGCTTCCCGATA
*
10883722 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
*
10883745 TGGTTCTTTGTGA
1 -GGCTCTTTGTGA
10883758 ACTACCTGAT
Statistics
Matches: 80, Mismatches: 20, Indels: 13
0.71 0.18 0.12
Matches are distributed among these distances:
22 5 0.06
23 45 0.56
24 14 0.17
25 15 0.19
26 1 0.01
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCCGATA
Found at i:10898146 original size:17 final size:17
Alignment explanation
Indices: 10898105--10898147 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
10898095 CCCAATTTTA
10898105 TTTTTATTTATATATAT
1 TTTTTATTTATATATAT
* *
10898122 ATTATATTCTAT-TATAT
1 TTTTTATT-TATATATAT
10898139 TTTTTATTT
1 TTTTTATTT
10898148 CTTGCATGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
16 1 0.05
17 17 0.81
18 3 0.14
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTATTTATATATAT
Found at i:10902119 original size:35 final size:36
Alignment explanation
Indices: 10901991--10902122 Score: 151
Period size: 35 Copynumber: 3.6 Consensus size: 36
10901981 TCCTCATTGA
** *
10901991 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
10902026 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
10902066 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
10902101 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
10902123 CTTTGCCATG
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
35 54 0.64
39 3 0.04
40 27 0.32
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:10909581 original size:35 final size:36
Alignment explanation
Indices: 10909453--10909584 Score: 151
Period size: 35 Copynumber: 3.6 Consensus size: 36
10909443 TCCTCATTGA
** *
10909453 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
10909488 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
10909528 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
10909563 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
10909585 CTTTGCCATG
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
35 54 0.64
39 3 0.04
40 27 0.32
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:10922141 original size:27 final size:27
Alignment explanation
Indices: 10922103--10922158 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
10922093 ATTTAAGACT
10922103 TGATGGTTGTGGGGGCATACCCAAAGC
1 TGATGGTTGTGGGGGCATACCCAAAGC
10922130 TGATGGTTGTGGGGGCATACCCAAAGC
1 TGATGGTTGTGGGGGCATACCCAAAGC
10922157 TG
1 TG
10922159 TTCTATGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.38, T:0.23
Consensus pattern (27 bp):
TGATGGTTGTGGGGGCATACCCAAAGC
Found at i:10931805 original size:9 final size:9
Alignment explanation
Indices: 10931780--10931810 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
10931770 AATTTGTGAA
10931780 AAATAAAAT
1 AAATAAAAT
10931789 AGAATAAAAT
1 A-AATAAAAT
10931799 AAATAAAAT
1 AAATAAAAT
10931808 AAA
1 AAA
10931811 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:10932994 original size:52 final size:55
Alignment explanation
Indices: 10932902--10933005 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 55
10932892 AATAACAATG
*
10932902 TTAAAAAACAACTATTAATATTACATAAATATACACACATA-TACATATATATATT
1 TTAAAAAACAACTAATAATATTA-ATAAATATACACACATACTACATATATATATT
** *
10932957 TTAAAAAA-AACATAATAATATT-A-AAATATACGTACATACTATATATATA
1 TTAAAAAACAAC-TAATAATATTAATAAATATACACACATACTACATATATA
10933006 CATATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
52 13 0.30
53 10 0.23
54 3 0.07
55 17 0.40
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.34
Consensus pattern (55 bp):
TTAAAAAACAACTAATAATATTAATAAATATACACACATACTACATATATATATT
Found at i:10933063 original size:27 final size:28
Alignment explanation
Indices: 10932997--10933088 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 28
10932987 CGTACATACT
*
10932997 ATATATATACATATAATATAGTTATTAAGA
1 ATATATATACA-AT-ATATAGATATTAAGA
* *
10933027 AAATACATACAATATATA-ATATTAAGA
1 ATATATATACAATATATAGATATTAAGA
* *
10933054 ATATATATACAATACATATGGTATTAAGA
1 ATATATATACAATATATA-GATATTAAGA
10933083 A-ATATA
1 ATATATA
10933089 GTATTATAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 23 0.43
28 10 0.19
29 11 0.21
30 9 0.17
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (28 bp):
ATATATATACAATATATAGATATTAAGA
Found at i:10933164 original size:15 final size:15
Alignment explanation
Indices: 10933141--10933201 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
10933131 TTTAAAAAAA
* *
10933141 AATACTAATACTAAT
1 AATAGTAATAGTAAT
10933156 AATAGTAATAGTAA-
1 AATAGTAATAGTAAT
*
10933170 AATATTAATA--AAT
1 AATAGTAATAGTAAT
10933183 AATAG-ATATAGTAAT
1 AATAGTA-ATAGTAAT
10933198 AATA
1 AATA
10933202 AAAGCGTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.08
13 7 0.18
14 9 0.24
15 19 0.50
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAGTAATAGTAAT
Found at i:10933473 original size:19 final size:20
Alignment explanation
Indices: 10933431--10933477 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
10933421 CATGGCATAG
10933431 TATATA-AAAAATATACTTGA
1 TATATATAAAAATATAC-TGA
*
10933451 TATATATAAACATATAC-GA
1 TATATATAAAAATATACTGA
10933470 TATATATA
1 TATATATA
10933478 TATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
20 6 0.24
21 9 0.36
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.36
Consensus pattern (20 bp):
TATATATAAAAATATACTGA
Found at i:10933596 original size:3 final size:3
Alignment explanation
Indices: 10933588--10933641 Score: 90
Period size: 3 Copynumber: 17.7 Consensus size: 3
10933578 ATACTAGTAC
*
10933588 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
10933637 TAA TA
1 TAA TA
10933642 TATGCATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10933713 original size:13 final size:13
Alignment explanation
Indices: 10933697--10933735 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 13
10933687 GATATAATAT
10933697 AATAATATATAAA
1 AATAATATATAAA
10933710 AATAATAGTGATAAA
1 AATAATA-T-ATAAA
10933725 AATAATATATA
1 AATAATATATA
10933736 TATCATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (13 bp):
AATAATATATAAA
Found at i:10935582 original size:14 final size:15
Alignment explanation
Indices: 10935549--10935582 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
10935539 ATTGATCTTT
*
10935549 AAAAAATATAAATTG
1 AAAAAACATAAATTG
10935564 AAAAAACATAAATTG
1 AAAAAACATAAATTG
10935579 AAAA
1 AAAA
10935583 TACCTCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAAACATAAATTG
Found at i:10935777 original size:89 final size:86
Alignment explanation
Indices: 10935740--10935910 Score: 236
Period size: 88 Copynumber: 2.0 Consensus size: 86
10935730 TAAATTGGAG
* *
10935740 AAAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
10935805 ATTTTTGAAAAACAGAAATTA
66 ATTTTTGAAAAACAGAAATTA
* * * *
10935826 AAAATAGAAATTGAAAAGACCTCGGCATGTGAGCC-GAGGCTCAACTCACCTCTCACGATATGAG
1 AAAATAGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
10935890 TTGATTTTTTGACAAACAGAA
63 TTGA-TTTTTGAAAAACAGAA
10935911 GTTGAAATTA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
86 27 0.36
88 30 0.41
89 17 0.23
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (86 bp):
AAAATAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAACAGAAATTA
Done.