Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 44 of 378
Found at i:10935834 original size:13 final size:14
Alignment explanation
Indices: 10935809--10935842 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
10935799 GAGTTGATTT
10935809 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
10935823 TT-AAAAATAGAAA
1 TTGAAAAACAGAAA
10935836 TTGAAAA
1 TTGAAAA
10935843 GACCTCGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:10935891 original size:88 final size:87
Alignment explanation
Indices: 10935657--10935915 Score: 326
Period size: 89 Copynumber: 2.9 Consensus size: 87
10935647 TTGAAAAGAG
* * * *
10935657 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 GAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGC-ATATGAGTTGATTTTT
*
10935722 GAAAAACATAAATTGGAGAAAATA
65 GAAAAACAGAAATT-GAGAAAATA
**
10935746 GAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
1 GAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCA-TATGAGTTGATTTTT
10935811 GAAAAACAGAAATT-A-AAAATA
65 GAAAAACAGAAATTGAGAAAATA
* *
10935832 GAAATTGAAAAGACCTCGGCATGTGAGCC-GAGGCTCAACTCACCTCTCACGATATGAGTTGATT
1 GAAATTGAAAAGACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGC-ATATGAGTTGA-T
* *
10935896 TTTTGACAAACAGAAGTTGA
61 TTTTGAAAAACAGAAATTGA
10935916 AATTACCTCA
Statistics
Matches: 152, Mismatches: 11, Indels: 13
0.86 0.06 0.07
Matches are distributed among these distances:
86 27 0.18
87 1 0.01
88 31 0.20
89 92 0.61
90 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (87 bp):
GAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCATATGAGTTGATTTTTG
AAAAACAGAAATTGAGAAAATA
Found at i:10936020 original size:72 final size:73
Alignment explanation
Indices: 10935861--10936282 Score: 475
Period size: 75 Copynumber: 5.8 Consensus size: 73
10935851 CATGTGAGCC
* *
10935861 GAGGCTCAACTCACCTCTCACGATATGAGTTGATTTTTTGACAAACAGAAGTTG-AAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAA-TTGAAAATTACCTC
10935925 AGCGTGTCCT
64 AGCGTGTCCT
* * *
10935935 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTCGAAAACGGAGA-TCAAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGA-ATTGAAAATTACCTCA
10935998 GCGTGTCCT
65 GCGTGTCCT
*
10936007 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAAA-TACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAA-ACAG-AATTGAAAATTACCT
* *
10936071 CAACGTGTCTT
63 CAGCGTGTCCT
* * * * * *
10936082 GAGGCTCAACTCACTTCTTGCAGTATGAGTTGA-ATTTTG-AAACAGAA-TAAAAATTATCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAATTGAAAATTACCTCAG
*
10936144 CGTGTCCC
66 CGTGTCCT
* *
10936152 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAATAATTGAAAA-TACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA-AAAC-AGAATTGAAAATTACCT
* *
10936216 CAGCGTGCCCC
63 CAGCGTGTCCT
* * * * *
10936227 GAGGCTCAATTCACCTATAGCAATATGAATTGA-TTTTTGAAAACATAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACA-GAATTGAAAA
10936283 ACCGAAATCG
Statistics
Matches: 297, Mismatches: 36, Indels: 32
0.81 0.10 0.09
Matches are distributed among these distances:
69 5 0.02
70 43 0.14
71 6 0.02
72 78 0.26
73 20 0.07
74 42 0.14
75 92 0.31
76 11 0.04
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAATTGAAAATTACCTCAG
CGTGTCCT
Found at i:10936192 original size:145 final size:146
Alignment explanation
Indices: 10935862--10936268 Score: 545
Period size: 145 Copynumber: 2.8 Consensus size: 146
10935852 ATGTGAGCCG
* * *
10935862 AGGCTCAACTCACCTCTCACGATATGAGTTGA-TTTTTTGACAAACAGAAGTTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCA
* * *
10935926 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTCGAAAACGGAGATCAAAA
66 GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTTT-G-AAACAGAGATAAAAA
**
10935990 TTACCTCAGCGTGTCCTG
129 TTACCTCAGCGTGTCCCA
*
10936008 AGGCTCAACTCACCTCTCACAATATGAGTTGATTATTTTGA-AAGACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAA-ACAGAAATTGAAAATACCTC
* * * * *
10936072 AACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTGAAACAGA-ATAAAAAT
65 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTTTGAAACAGAGATAAAAAT
*
10936136 TATCTCAGCGTGTCCCA
130 TACCTCAGCGTGTCCCA
*
10936153 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACA-ATAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGA-AATTGAAAATACCTC
* * * * * *
10936217 AGCGTGCCCCGAGGCTCAATTCACCTATAGCAATATGAATTGATTTTTGAAA
65 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTTTGAAA
10936269 ACATAAATTG
Statistics
Matches: 229, Mismatches: 27, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
144 1 0.00
145 119 0.52
146 41 0.18
147 63 0.28
148 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (146 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTTTGAAACAGAGATAAAAATT
ACCTCAGCGTGTCCCA
Found at i:10948762 original size:27 final size:28
Alignment explanation
Indices: 10948696--10948787 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 28
10948686 CGTACATACT
*
10948696 ATATATATACATATAATATAGTTATTAAGA
1 ATATATATACA-AT-ATATAGATATTAAGA
* *
10948726 AAATACATACAATATATA-ATATTAAGA
1 ATATATATACAATATATAGATATTAAGA
* *
10948753 ATATATATACAATACATATGGTATTAAGA
1 ATATATATACAATATATA-GATATTAAGA
10948782 A-ATATA
1 ATATATA
10948788 GTATTATAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 23 0.43
28 10 0.19
29 11 0.21
30 9 0.17
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (28 bp):
ATATATATACAATATATAGATATTAAGA
Found at i:10948875 original size:23 final size:21
Alignment explanation
Indices: 10948840--10948882 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
10948830 TTTTAAAAAA
*
10948840 AAAATACTGATAATAGTAATAGT
1 AAAATACTAATAA-A-TAATAGT
*
10948863 AAAATATTAATAAATAATAG
1 AAAATACTAATAAATAATAG
10948883 ATATAGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (21 bp):
AAAATACTAATAAATAATAGT
Found at i:10949311 original size:3 final size:3
Alignment explanation
Indices: 10949303--10949350 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
10949293 ATACTAGTAC
* *
10949303 TAA TAA TAA TAG TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10949351 AAAATATATG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10949315 original size:15 final size:15
Alignment explanation
Indices: 10949292--10949350 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
10949282 AATGAAAATC
* *
10949292 AATACTAGTACTAAT
1 AATAATAGTAATAAT
*
10949307 AATAATAGTAGTAAT
1 AATAATAGTAATAAT
*
10949322 AATAATAATAATAAT
1 AATAATAGTAATAAT
*
10949337 AATAATAATAATAA
1 AATAATAGTAATAA
10949351 AAAATATATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (15 bp):
AATAATAGTAATAAT
Found at i:10949428 original size:13 final size:13
Alignment explanation
Indices: 10949412--10949450 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 13
10949402 GATATAATAT
10949412 AATAATATATAAA
1 AATAATATATAAA
10949425 AATAATAGTGATAAA
1 AATAATA-T-ATAAA
10949440 AATAATATATA
1 AATAATATATA
10949451 TATATATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (13 bp):
AATAATATATAAA
Found at i:10950121 original size:2 final size:2
Alignment explanation
Indices: 10950101--10950139 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
10950091 TCTTTTCTTT
* *
10950101 TA TA TA TT TA TGA TG TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA
10950140 AAATCAGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10950169 original size:5 final size:5
Alignment explanation
Indices: 10950155--10950188 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
10950145 AGCAGATTCG
10950155 AAAA- AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
10950189 GATATAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:10951703 original size:42 final size:42
Alignment explanation
Indices: 10951643--10951723 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
10951633 GTTTTAAACA
10951643 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
1 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
* * *
10951685 GATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGA
1 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGA
10951724 TCAGTGTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (42 bp):
GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
Found at i:10952202 original size:42 final size:42
Alignment explanation
Indices: 10952142--10952222 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
10952132 GTTTTAAACA
10952142 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
1 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
* * *
10952184 GATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGA
1 GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGA
10952223 TCAGTGTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (42 bp):
GATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTGAACG
Found at i:10952294 original size:499 final size:499
Alignment explanation
Indices: 10951356--10952356 Score: 2002
Period size: 499 Copynumber: 2.0 Consensus size: 499
10951346 CTTTTTATTT
10951356 TTCAGTTTTGGTTGAAATTAATTTTTAATATTTAATATTAAGTATTTTTAAGATAATAATGAAAA
1 TTCAGTTTTGGTTGAAATTAATTTTTAATATTTAATATTAAGTATTTTTAAGATAATAATGAAAA
10951421 TTGTTACTTCAACATTAACTTTTTTTTTATGTTTAATTTTCATTGAATTTTGTGATTCCACTTTG
66 TTGTTACTTCAACATTAACTTTTTTTTTATGTTTAATTTTCATTGAATTTTGTGATTCCACTTTG
10951486 CAATTTGTTAGTCTCTAAAAATGGTAAAATTTCAAGATTAGGCCCAATATTTTGTTAAAAATATG
131 CAATTTGTTAGTCTCTAAAAATGGTAAAATTTCAAGATTAGGCCCAATATTTTGTTAAAAATATG
10951551 ATATTTGTTAGTTTTTCATTCCTTCTAAAACTTTAGAAATTTTTTCAAATTGCATTAGAGGAAAT
196 ATATTTGTTAGTTTTTCATTCCTTCTAAAACTTTAGAAATTTTTTCAAATTGCATTAGAGGAAAT
10951616 TCTGTTTAGGAGTTTGAGTTTTAAACAGATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTG
261 TCTGTTTAGGAGTTTGAGTTTTAAACAGATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTG
10951681 AACGGATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGATCAGTGTGATTTTTCCGATTAA
326 AACGGATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGATCAGTGTGATTTTTCCGATTAA
10951746 TTCTATTTTTAGATTATTTCAAAAGAGCAATACCAATTGAGTTCTACATTCCTTATTCGAGTGTA
391 TTCTATTTTTAGATTATTTCAAAAGAGCAATACCAATTGAGTTCTACATTCCTTATTCGAGTGTA
10951811 CGATTACACCAATCAGAGTGAATTCGTATCTAAGATAATGATTC
456 CGATTACACCAATCAGAGTGAATTCGTATCTAAGATAATGATTC
10951855 TTCAGTTTTGGTTGAAATTAATTTTTAATATTTAATATTAAGTATTTTTAAGATAATAATGAAAA
1 TTCAGTTTTGGTTGAAATTAATTTTTAATATTTAATATTAAGTATTTTTAAGATAATAATGAAAA
10951920 TTGTTACTTCAACATTAACTTTTTTTTTATGTTTAATTTTCATTGAATTTTGTGATTCCACTTTG
66 TTGTTACTTCAACATTAACTTTTTTTTTATGTTTAATTTTCATTGAATTTTGTGATTCCACTTTG
10951985 CAATTTGTTAGTCTCTAAAAATGGTAAAATTTCAAGATTAGGCCCAATATTTTGTTAAAAATATG
131 CAATTTGTTAGTCTCTAAAAATGGTAAAATTTCAAGATTAGGCCCAATATTTTGTTAAAAATATG
10952050 ATATTTGTTAGTTTTTCATTCCTTCTAAAACTTTAGAAATTTTTTCAAATTGCATTAGAGGAAAT
196 ATATTTGTTAGTTTTTCATTCCTTCTAAAACTTTAGAAATTTTTTCAAATTGCATTAGAGGAAAT
10952115 TCTGTTTAGGAGTTTGAGTTTTAAACAGATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTG
261 TCTGTTTAGGAGTTTGAGTTTTAAACAGATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTG
10952180 AACGGATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGATCAGTGTGATTTTTCCGATTAA
326 AACGGATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGATCAGTGTGATTTTTCCGATTAA
10952245 TTCTATTTTTAGATTATTTCAAAAGAGCAATACCAATTGAGTTCTACATTCCTTATTCGAGTGTA
391 TTCTATTTTTAGATTATTTCAAAAGAGCAATACCAATTGAGTTCTACATTCCTTATTCGAGTGTA
10952310 CGATTACACCAATCAGAGTGAATTCGTATCTAAGATAATGATTC
456 CGATTACACCAATCAGAGTGAATTCGTATCTAAGATAATGATTC
10952354 TTC
1 TTC
10952357 CATGGCACAA
Statistics
Matches: 502, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
499 502 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (499 bp):
TTCAGTTTTGGTTGAAATTAATTTTTAATATTTAATATTAAGTATTTTTAAGATAATAATGAAAA
TTGTTACTTCAACATTAACTTTTTTTTTATGTTTAATTTTCATTGAATTTTGTGATTCCACTTTG
CAATTTGTTAGTCTCTAAAAATGGTAAAATTTCAAGATTAGGCCCAATATTTTGTTAAAAATATG
ATATTTGTTAGTTTTTCATTCCTTCTAAAACTTTAGAAATTTTTTCAAATTGCATTAGAGGAAAT
TCTGTTTAGGAGTTTGAGTTTTAAACAGATCTATTTGTAACCCCTCCAAATTTTCCTAAGAATTG
AACGGATCTGTTTGTAATCCCTCCAAATTTTCCTGAGAATTGATCAGTGTGATTTTTCCGATTAA
TTCTATTTTTAGATTATTTCAAAAGAGCAATACCAATTGAGTTCTACATTCCTTATTCGAGTGTA
CGATTACACCAATCAGAGTGAATTCGTATCTAAGATAATGATTC
Found at i:10957732 original size:6 final size:6
Alignment explanation
Indices: 10957721--10957751 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
10957711 CAAATATTGT
*
10957721 GGCAGG GGCAGG GGCAGG GACAGG GGCAGG G
1 GGCAGG GGCAGG GGCAGG GGCAGG GGCAGG G
10957752 TCGGTCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.19, C:0.16, G:0.65, T:0.00
Consensus pattern (6 bp):
GGCAGG
Found at i:10963882 original size:4 final size:4
Alignment explanation
Indices: 10963875--10964553 Score: 344
Period size: 4 Copynumber: 173.5 Consensus size: 4
10963865 AACTAAAGAA
* * * * * * * *
10963875 AGAG AGAG AGGG AGAG GGAG GGAG GGAG AGGG AGGG AGGG AGAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * *
10963923 AGAG GGAG GGAG AGAG GGAG GGAG AGGG AGGG AGAG AGGG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10963971 GGAG AGAG GGAG GGAG GGAG AGAG AGAG GGAG GGAG AGAG GGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * *
10964019 AGGG AGAG AGGG AGAG AGGG AGAG AGAG AGAG AG-G AGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10964066 AGGG AGGG AGGG AGAG GGAG GGAG AGAG GGAG AGGG A-AG -GA- AG-G
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10964110 AGAG GGAG GGAG GGAG GGAG AGAG AGAG AGAG GGAG AGGG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * * *
10964158 AGGG AGAG GGA- AG-G AGGG AGAG GGAG GGAG GGAG GGAG GGAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10964204 AGGG AGAG AGGG AGGG AGAG AGGG AGGG AGGG AGAG GGAG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * *
10964252 AGAG AGAA AGAG GGAG GGAG GGAG GGAG AGAG GGAG AGAG GGAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * *
10964300 AGGG AGAG GGAG AGAG GGAG GGAG GGAG GGAG AGAG AGAG GGAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10964348 AGGG AGGG AGGG AGAG -GAG AGAG GGAG AGGG AGGG A-AA AG-G AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
10964393 GGAG A-AG -GGG AGGG AGAG GGAG AGGG AAAG -GA- AGGG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * *
10964437 AGGG AGGG AGGG AGAG AGAG AGAG -GGG AGGG AGAG AGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * *
10964484 GGGG AGAG GGAG AGAG AGAG AGAG AGAG GGAG AGAG AGAG AGGG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* *
10964532 AGAG AGGG AGGG AGAG AGAG AG
1 AGAG AGAG AGAG AGAG AGAG AG
10964554 TGATCTAGAT
Statistics
Matches: 545, Mismatches: 115, Indels: 30
0.79 0.17 0.04
Matches are distributed among these distances:
3 24 0.04
4 521 0.96
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (4 bp):
AGAG
Found at i:10963899 original size:8 final size:8
Alignment explanation
Indices: 10963888--10964545 Score: 459
Period size: 8 Copynumber: 84.9 Consensus size: 8
10963878 GAGAGAGGGA
10963888 GAGGGAGG
1 GAGGGAGG
10963896 GAGGGA--
1 GAGGGAGG
10963902 GAGGGAGG
1 GAGGGAGG
*
10963910 GAGGGAGA
1 GAGGGAGG
10963918 GAGGGA--
1 GAGGGAGG
10963924 GAGGGAGG
1 GAGGGAGG
*
10963932 GAGAGAGG
1 GAGGGAGG
10963940 GAGGGA--
1 GAGGGAGG
10963946 GAGGGAGG
1 GAGGGAGG
*
10963954 GAGAGAGG
1 GAGGGAGG
10963962 GAGGGA--
1 GAGGGAGG
*
10963968 GAGGGAGA
1 GAGGGAGG
10963976 GAGGGAGG
1 GAGGGAGG
*
10963984 GAGGGAGA
1 GAGGGAGG
*
10963992 GAGAGAGG
1 GAGGGAGG
*
10964000 GAGGGAGA
1 GAGGGAGG
10964008 GAGGGAGAG
1 GAGGGAG-G
*
10964017 AGAGGGAGA
1 -GAGGGAGG
*
10964026 GAGGGAGA
1 GAGGGAGG
*
10964034 GAGGGAGA
1 GAGGGAGG
* *
10964042 GAGAGAGA
1 GAGGGAGG
*
10964050 GA-GGAGA
1 GAGGGAGG
*
10964057 GAGGGAGA
1 GAGGGAGG
10964065 GAGGGAGG
1 GAGGGAGG
10964073 GAGGGA--
1 GAGGGAGG
10964079 GAGGGAGG
1 GAGGGAGG
*
10964087 GAGAGAGG
1 GAGGGAGG
10964095 GA--GAGG
1 GAGGGAGG
*
10964101 GAAGGAAGG
1 G-AGGGAGG
10964110 AGAGGGAGG
1 -GAGGGAGG
10964119 GAGGGAGG
1 GAGGGAGG
* *
10964127 GAGAGAGA
1 GAGGGAGG
*
10964135 GAGAGAGG
1 GAGGGAGG
10964143 GA--GAGG
1 GAGGGAGG
*
10964149 GAGGGAGA
1 GAGGGAGG
10964157 GAGGGA--
1 GAGGGAGG
*
10964163 GAGGGAAG
1 GAGGGAGG
10964171 GAGGGA--
1 GAGGGAGG
10964177 GAGGGAGG
1 GAGGGAGG
10964185 GAGGGAGG
1 GAGGGAGG
10964193 GAGGGA--
1 GAGGGAGG
10964199 GAGGGAGG
1 GAGGGAGG
*
10964207 GAGAGAGG
1 GAGGGAGG
*
10964215 GAGGGAGA
1 GAGGGAGG
10964223 GAGGGAGG
1 GAGGGAGG
10964231 GAGGGA--
1 GAGGGAGG
*
10964237 GAGGGAGA
1 GAGGGAGG
* *
10964245 GAGAGAGA
1 GAGGGAGG
* **
10964253 GAGAGAAA
1 GAGGGAGG
10964261 GAGGGAGG
1 GAGGGAGG
10964269 GAGGGAGG
1 GAGGGAGG
*
10964277 GAGAGAGG
1 GAGGGAGG
*
10964285 GAGAGAGG
1 GAGGGAGG
10964293 GA--GAGG
1 GAGGGAGG
10964299 GAGGGA--
1 GAGGGAGG
*
10964305 GAGGGAGA
1 GAGGGAGG
10964313 GAGGGAGG
1 GAGGGAGG
10964321 GAGGGAGG
1 GAGGGAGG
* *
10964329 GAGAGAGA
1 GAGGGAGG
10964337 GAGGGA--
1 GAGGGAGG
10964343 GAGGGAGG
1 GAGGGAGG
10964351 GAGGGAGG
1 GAGGGAGG
*
10964359 GAGAGGAGA
1 GAG-GGAGG
10964368 GAGGGA--
1 GAGGGAGG
10964374 GAGGGAGG
1 GAGGGAGG
**
10964382 GA-AAAGG
1 GAGGGAGG
10964389 AGAGGGA-G
1 -GAGGGAGG
*
10964397 AAGGGGAGG
1 GA-GGGAGG
*
10964406 GAGAGG-GA
1 GAG-GGAGG
10964414 GAGGGAAAGG
1 GAGGG--AGG
* *
10964424 AAGGGAGA
1 GAGGGAGG
*
10964432 GAGAGAGG
1 GAGGGAGG
10964440 GAGGGAGG
1 GAGGGAGG
* *
10964448 GAGAGAGA
1 GAGGGAGG
*
10964456 GAGAG-GG
1 GAGGGAGG
*
10964463 GAGGGAGA
1 GAGGGAGG
*
10964471 GAGAGAGG
1 GAGGGAGG
*
10964479 GAGAGGGGG
1 GAG-GGAGG
*
10964488 AGAGGGAGA
1 -GAGGGAGG
* *
10964497 GAGAGAGA
1 GAGGGAGG
*
10964505 GAGAGAGG
1 GAGGGAGG
*
10964513 GAGAGAGAGA
1 GAG-G-GAGG
10964523 GAGGGAGG
1 GAGGGAGG
*
10964531 GAGAGAGG
1 GAGGGAGG
10964539 GAGGGAG
1 GAGGGAG
10964546 AGAGAGAGTG
Statistics
Matches: 531, Mismatches: 70, Indels: 98
0.76 0.10 0.14
Matches are distributed among these distances:
6 89 0.17
7 18 0.03
8 374 0.70
9 28 0.05
10 22 0.04
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (8 bp):
GAGGGAGG
Found at i:10963913 original size:22 final size:22
Alignment explanation
Indices: 10963888--10964547 Score: 519
Period size: 22 Copynumber: 30.0 Consensus size: 22
10963878 GAGAGAGGGA
10963888 GAGGGAGGGAGGGAGAGG-GAGG
1 GAGGGAGGGAGGGAG-GGAGAGG
*
10963910 GAGGGAGAGAGGGA----GAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10963928 GAGGGAGAGAGGGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10963950 GAGGGAGAGAGGGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10963972 GAGAGAGGGAGGGAGGGAGAGAG
1 GAGGGAGGGAGGGAGGGAGAG-G
* *
10963995 AGAGGGAGGGAGAGAGGGAGAGA
1 -GAGGGAGGGAGGGAGGGAGAGG
*
10964018 GAGGGAGAGAGGGA--GAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
* * *
10964038 GAGAGAGAGAGAGAGGAGAGAGG
1 GAGGGAGGGAGGGAGG-GAGAGG
*
10964061 GAGAGAGGGAGGGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10964083 GAGGGAGAGAGGGAGAGGGAAGGAAGG
1 GAGGGAGGGA-GG-GAGGG-A-G-AGG
10964110 AGAGGGAGGGAGGGAGGGAGAGAG
1 -GAGGGAGGGAGGGAGGGAGAG-G
*
10964134 AGAGAGAGGGAGAGGGAGGGAGAGAG
1 -GAGGGA-GG-GAGGGAGGGAGAG-G
* *
10964160 G-GAGAGGGAAGGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
10964181 GAGGGAGGGAGGGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10964203 GAGGGAGAGAGGGAGGGAGA--
1 GAGGGAGGGAGGGAGGGAGAGG
*
10964223 GAGGGAGGGAGGGAGAGGGAGAGA
1 GAGGGAGGGA-GG-GAGGGAGAGG
* * **
10964247 GAGAGAGAGAGAAAGAGG-GAGG
1 GAGGGAGGGAGGGAG-GGAGAGG
*
10964269 GAGGGAGGGAGAGAGGGAGAGAG
1 GAGGGAGGGAGGGAGGGAGAG-G
* *
10964292 G-GAGAGGGAGGGAGAGG-GAGA
1 GAGGGAGGGAGGGAG-GGAGAGG
10964313 GAGGGAGGGAGGGAGGGAGAGAG
1 GAGGGAGGGAGGGAGGGAGAG-G
10964336 AGAGGGA--GAGGGA-GG-GAGG
1 -GAGGGAGGGAGGGAGGGAGAGG
*
10964355 GAGGGAGAGGAGAGAGGGAGAGG
1 GAGGGAG-GGAGGGAGGGAGAGG
** *
10964378 GAGGGA-AAAGGAGAGGGAGA-A
1 GAGGGAGGGAGG-GAGGGAGAGG
10964399 G-GGGAGGGA--GAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
* *
10964418 GAAAGGAAGGGA--GAGAGAGAGG
1 G--AGGGAGGGAGGGAGGGAGAGG
* *
10964440 GAGGGAGGGAGAGAGAGAGAGGG
1 GAGGGAGGGAGGGAGGGAGA-GG
* *
10964463 GAGGGAGAGAGAGAGGGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
* *
10964485 G-GGAGAGGGA--GAGAGAGAGA
1 GAGG-GAGGGAGGGAGGGAGAGG
* * *
10964505 GAGAGAGGGAGAGAGAGAGAGG
1 GAGGGAGGGAGGGAGGGAGAGG
*
10964527 GAGGGAGAGAGGGAGGGAGAG
1 GAGGGAGGGAGGGAGGGAGAG
10964548 AGAGAGTGAT
Statistics
Matches: 532, Mismatches: 57, Indels: 98
0.77 0.08 0.14
Matches are distributed among these distances:
18 32 0.06
19 2 0.00
20 56 0.11
21 23 0.04
22 265 0.50
23 64 0.12
24 50 0.09
25 5 0.01
26 21 0.04
27 5 0.01
28 9 0.02
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (22 bp):
GAGGGAGGGAGGGAGGGAGAGG
Found at i:10964552 original size:18 final size:18
Alignment explanation
Indices: 10963878--10964553 Score: 565
Period size: 18 Copynumber: 39.4 Consensus size: 18
10963868 TAAAGAAAGA
*
10963878 GAGAGAGGGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10963896 GAGGGAGAGGGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
*
10963914 GAGAGAGGGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
10963932 GAGAGAG-G-GAGGGAGAG
1 GAGAGAGAGAGAGGGAG-G
*
10963949 G-GAGGGAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
*
10963966 GAGAGGGAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
10963984 GAGGGAGAGAGAGAGGGAGG
1 GA--GAGAGAGAGAGGGAGG
* *
10964004 GAGAGAGGGAGAGAGAGG
1 GAGAGAGAGAGAGGGAGG
*
10964022 GAGAGAG-G-GAGAGAGG
1 GAGAGAGAGAGAGGGAGG
10964038 GAGAGAGAGAGA--GAGG
1 GAGAGAGAGAGAGGGAGG
*
10964054 AGAGAGGGAGAGAGGGA-G
1 -GAGAGAGAGAGAGGGAGG
10964072 G-GAG-G-GAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964087 GAGAGAGGGAGAGGGAAG
1 GAGAGAGAGAGAGGGAGG
*
10964105 GA-AGGAGAGGGAGGGAGG
1 GAGA-GAGAGAGAGGGAGG
10964123 GAG-G-GAGAGA--GA--
1 GAGAGAGAGAGAGGGAGG
*
10964135 GAGAGAGGGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964153 GAGAGAGGGAGAGGGAAG
1 GAGAGAGAGAGAGGGAGG
* *
10964171 GAGGGAGAGGGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
*
10964189 GAG-G-GAG-G-GAGAGG
1 GAGAGAGAGAGAGGGAGG
10964203 GAG-G-GAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
10964219 GAGAGAG-G-GAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964235 GAGAG-G-GAGAGAGAGA
1 GAGAGAGAGAGAGGGAGG
*
10964251 GAGAGAGAAAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964269 GAG-G-GAGGGAGAGAGG
1 GAGAGAGAGAGAGGGAGG
*
10964285 GAGAGAGGGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
*
10964303 GAGAGGGAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964321 GAGGGAGGGAGAGAGAGAGG
1 GA--GAGAGAGAGAGGGAGG
* *
10964341 GAGAGGGAGGGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
10964359 GAGAG-GAGAGAGGGAGAG
1 GAGAGAGAGAGAGGGAG-G
* *
10964377 G-GAGGGA-AAAGGAGAGG
1 GAGAGAGAGAGAGG-GAGG
*
10964394 GAGA-AG-GGGAGGGAGAG
1 GAGAGAGAGAGAGGGAG-G
* * *
10964411 G-GAGAGGGA-AAGGAAG
1 GAGAGAGAGAGAGGGAGG
10964427 G-GAGAGAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964444 GAGGGAGAGAGAGAGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964462 G-GAGGGAGAGAGAGAGG
1 GAGAGAGAGAGAGGGAGG
* *
10964479 GAGAGGGGGAGAGGGA--
1 GAGAGAGAGAGAGGGAGG
*
10964495 GAGAGAGAGAGAGAGAGG
1 GAGAGAGAGAGAGGGAGG
10964513 GAGAGAGAGAGAGGGAGG
1 GAGAGAGAGAGAGGGAGG
*
10964531 GAGAGAG-G-GAGGGAGA
1 GAGAGAGAGAGAGGGAGG
10964547 GAGAGAG
1 GAGAGAG
10964554 TGATCTAGAT
Statistics
Matches: 549, Mismatches: 62, Indels: 96
0.78 0.09 0.14
Matches are distributed among these distances:
12 3 0.01
13 1 0.00
14 27 0.05
15 7 0.01
16 131 0.24
17 82 0.15
18 262 0.48
19 2 0.00
20 34 0.06
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (18 bp):
GAGAGAGAGAGAGGGAGG
Found at i:10966437 original size:13 final size:13
Alignment explanation
Indices: 10966399--10966439 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
10966389 TTTATTATGG
*
10966399 TTTCAATTTAATCT
1 TTTC-ATTTAATTT
10966413 TTTCATTTAATTT
1 TTTCATTTAATTT
*
10966426 TTTTATTTAATTT
1 TTTCATTTAATTT
10966439 T
1 T
10966440 AAAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 21 0.84
14 4 0.16
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTCATTTAATTT
Found at i:10977382 original size:24 final size:24
Alignment explanation
Indices: 10977346--10977399 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
10977336 TTTTTTTAAA
* * *
10977346 ATATATAGTATTTATTAGTATAAT
1 ATATTTAGAATTTATTAGCATAAT
10977370 ATATTTAGAATTTATTAGCATAAT
1 ATATTTAGAATTTATTAGCATAAT
10977394 ATATTT
1 ATATTT
10977400 GACATTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (24 bp):
ATATTTAGAATTTATTAGCATAAT
Found at i:10984725 original size:40 final size:40
Alignment explanation
Indices: 10984680--10984768 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
10984670 CAGTTTTTGT
*
10984680 TGGCACTTAGTGTGCGATACGACATAGCTCCAGCTGTATA
1 TGGCACTTAGTGTGCGATACGACATAGCTCCAGCTATATA
* *
10984720 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATACGACATAGCTCCAGCTATATA
10984760 TGGCACTTA
1 TGGCACTTA
10984769 ATATGGAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATACGACATAGCTCCAGCTATATA
Found at i:10984787 original size:40 final size:40
Alignment explanation
Indices: 10984680--10984796 Score: 128
Period size: 40 Copynumber: 2.9 Consensus size: 40
10984670 CAGTTTTTGT
* * * * *
10984680 TGGCACTTAGTGTGCGATACGACATAGCTCCAGCTGTATA
1 TGGCACTTAATATGCGATTCGACATAGCTTCAGCTATATA
* *
10984720 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAATATGCGATTCGACATAGCTTCAGCTATATA
* * *
10984760 TGGCACTTAATATG-GAATTTGAGATAGCTTCGGCTAT
1 TGGCACTTAATATGCG-ATTCGACATAGCTTCAGCTAT
10984797 TTACGACACT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 67 0.99
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (40 bp):
TGGCACTTAATATGCGATTCGACATAGCTTCAGCTATATA
Found at i:10986688 original size:2 final size:2
Alignment explanation
Indices: 10986668--10986710 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
10986658 TCATTTATGC
* *
10986668 AT AT TT AT AT CT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10986709 AT
1 AT
10986711 CAATTCATCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:10987248 original size:30 final size:30
Alignment explanation
Indices: 10987212--10987268 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10987202 TTTCAGGATC
10987212 CACACGGGCTAGG-CACACGCCCATGTGATT
1 CACACGGGC-AGGCCACACGCCCATGTGATT
*
10987242 CACACGGGCAGGCCACATGCCCATGTG
1 CACACGGGCAGGCCACACGCCCATGTG
10987269 CCAGCCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACGGGCAGGCCACACGCCCATGTGATT
Found at i:10988844 original size:25 final size:24
Alignment explanation
Indices: 10988787--10988858 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 24
10988777 CGAGTTGCCA
* **
10988787 TATATCAGGAAGTTCAAGCGAGCC
1 TATATCAGGAAGCTCAAAAGAGCC
*
10988811 -ATATGAGGAAGCTCACAAAGAGCC
1 TATATCAGGAAGCTCA-AAAGAGCC
*
10988835 TATATCAGGATGCTCATAAAGAGC
1 TATATCAGGAAGCTCA-AAAGAGC
10988859 TGCGGTATGT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 13 0.33
24 6 0.15
25 20 0.51
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
TATATCAGGAAGCTCAAAAGAGCC
Found at i:10990154 original size:22 final size:22
Alignment explanation
Indices: 10990126--10990169 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10990116 TAACAAAATT
10990126 TTCATACCTCATTCCTATCATA
1 TTCATACCTCATTCCTATCATA
10990148 TTCATACCTCATTCCTATCATA
1 TTCATACCTCATTCCTATCATA
10990170 ATGCAGAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (22 bp):
TTCATACCTCATTCCTATCATA
Found at i:10990496 original size:5 final size:6
Alignment explanation
Indices: 10990481--10990521 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
10990471 ATTATATATT
*
10990481 TTTTTA TTTTTA TTTTTA TTTTTAGA TTTTTA TTGTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTT
10990522 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 25 0.81
8 6 0.19
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:10990502 original size:20 final size:20
Alignment explanation
Indices: 10990486--10990535 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
10990476 ATATTTTTTT
*
10990486 ATTTTTATTTTTATTTTTAG
1 ATTTTTATTGTTATTTTTAG
*
10990506 ATTTTTATTGTTATTTATTAA
1 ATTTTTATTGTTATTT-TTAG
10990527 ATTATTTAT
1 ATT-TTTAT
10990536 AATTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 15 0.58
21 6 0.23
22 5 0.19
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (20 bp):
ATTTTTATTGTTATTTTTAG
Found at i:10992971 original size:23 final size:23
Alignment explanation
Indices: 10992896--10993044 Score: 88
Period size: 23 Copynumber: 6.5 Consensus size: 23
10992886 GAGCTGATGG
* *
10992896 ATAGTAAGCTCTAATGAGATGAA
1 ATAGTAAGCTCTAATGAGCTAAA
** * ***
10992919 ACGGTAAGCTCTATTGAGC-CGG
1 ATAGTAAGCTCTAATGAGCTAAA
* *
10992941 ATCGGTAAGCTCCAATGAGCTAAA
1 AT-AGTAAGCTCTAATGAGCTAAA
* ** *
10992965 ATAGTAAGCTCTTACAAGCT-GA
1 ATAGTAAGCTCTAATGAGCTAAA
*
10992987 ATCAGTAAGCTATAATGAGCTAAA
1 AT-AGTAAGCTCTAATGAGCTAAA
* * *
10993011 ATAGTAAGCTCTTACGAGCT-GA
1 ATAGTAAGCTCTAATGAGCTAAA
10993033 ATCAGTAAGCTC
1 AT-AGTAAGCTC
10993045 ATACGAGCTG
Statistics
Matches: 93, Mismatches: 28, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
22 7 0.08
23 81 0.87
24 5 0.05
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (23 bp):
ATAGTAAGCTCTAATGAGCTAAA
Found at i:10992972 original size:46 final size:46
Alignment explanation
Indices: 10992898--10993044 Score: 161
Period size: 46 Copynumber: 3.2 Consensus size: 46
10992888 GCTGATGGAT
* * ** ** *
10992898 AGTAAGCTCTAATGAGATGAAACGGTAAGCTC-TATTGAGCCGGATC
1 AGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTA-CAAGCCGAATC
* * *
10992944 GGTAAGCTCCAATGAGCTAAAATAGTAAGCTCTTACAAGCTGAATC
1 AGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTACAAGCCGAATC
* * *
10992990 AGTAAGCTATAATGAGCTAAAATAGTAAGCTCTTACGAGCTGAATC
1 AGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTACAAGCCGAATC
10993036 AGTAAGCTC
1 AGTAAGCTC
10993045 ATACGAGCTG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 83 0.98
47 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (46 bp):
AGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTACAAGCCGAATC
Found at i:10993049 original size:23 final size:23
Alignment explanation
Indices: 10992967--10993054 Score: 99
Period size: 23 Copynumber: 3.8 Consensus size: 23
10992957 GAGCTAAAAT
* *
10992967 AGTAAGCTCTTACAAGCTGAATC
1 AGTAAGCTCATACGAGCTGAATC
* *
10992990 AGTAAGCT-ATAATGAGCTAAAAT-
1 AGTAAGCTCAT-ACGAGCT-GAATC
*
10993013 AGTAAGCTCTTACGAGCTGAATC
1 AGTAAGCTCATACGAGCTGAATC
10993036 AGTAAGCTCATACGAGCTG
1 AGTAAGCTCATACGAGCTG
10993055 TGGTGAGTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
22 4 0.08
23 45 0.85
24 4 0.08
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCATACGAGCTGAATC
Found at i:11004581 original size:10 final size:10
Alignment explanation
Indices: 11004566--11004594 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
11004556 GTTTTATACT
11004566 TAGGAGAGCA
1 TAGGAGAGCA
11004576 TAGGAGAGCA
1 TAGGAGAGCA
11004586 TAGGAGAGC
1 TAGGAGAGC
11004595 GAAAGGAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.41, T:0.10
Consensus pattern (10 bp):
TAGGAGAGCA
Found at i:11005497 original size:25 final size:25
Alignment explanation
Indices: 11005469--11005527 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
11005459 ACTTAGGGAT
11005469 CTCACGATAGGTACACTTGCCTACC
1 CTCACGATAGGTACACTTGCCTACC
11005494 CTCACGATAGGTACACTTGCCTACC
1 CTCACGATAGGTACACTTGCCTACC
11005519 CTCACGATA
1 CTCACGATA
11005528 ATAGTTAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (25 bp):
CTCACGATAGGTACACTTGCCTACC
Found at i:11008524 original size:15 final size:15
Alignment explanation
Indices: 11008504--11008533 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11008494 AAATGCATAG
11008504 AAATAAGCCATATTC
1 AAATAAGCCATATTC
11008519 AAATAAGCCATATTC
1 AAATAAGCCATATTC
11008534 GCATGGCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATAAGCCATATTC
Found at i:11009020 original size:2 final size:2
Alignment explanation
Indices: 11009008--11009047 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
11008998 TATCACATAA
* *
11009008 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11009048 CACCAACAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:11015177 original size:25 final size:25
Alignment explanation
Indices: 11015148--11015195 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11015138 TTATAATATG
* * *
11015148 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11015173 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11015196 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11015264 original size:20 final size:20
Alignment explanation
Indices: 11015239--11015297 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
11015229 TAAATATGGT
11015239 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
11015259 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
11015279 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
11015298 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:11015378 original size:23 final size:24
Alignment explanation
Indices: 11015348--11015442 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
11015338 GAGGAAGTGA
11015348 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
11015371 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11015395 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
11015419 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11015443 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:11015416 original size:47 final size:49
Alignment explanation
Indices: 11015349--11015442 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
11015339 AGGAAGTGAA
*
11015349 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
11015396 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
11015443 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:11015685 original size:38 final size:38
Alignment explanation
Indices: 11015634--11015796 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
11015624 CGTTTACAGT
11015634 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
11015672 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
11015703 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
11015741 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
11015779 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
11015797 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:11015696 original size:31 final size:31
Alignment explanation
Indices: 11015658--11015773 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
11015648 AGTATTATGA
11015658 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
11015689 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
11015725 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
11015758 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
11015774 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:11015710 original size:69 final size:69
Alignment explanation
Indices: 11015634--11015773 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
11015624 CGTTTACAGT
11015634 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
11015699 ATGA
66 ATGA
*
11015703 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
11015768 ATGA
66 ATGA
11015772 AA
1 AA
11015774 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:11023530 original size:25 final size:25
Alignment explanation
Indices: 11023501--11023548 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11023491 TTATAATATG
* * *
11023501 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
11023526 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
11023549 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11023617 original size:20 final size:20
Alignment explanation
Indices: 11023592--11023650 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
11023582 TAAATATGGT
11023592 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
11023612 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
11023632 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
11023651 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:11023731 original size:23 final size:24
Alignment explanation
Indices: 11023701--11023795 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
11023691 GAGGAAGTGA
11023701 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
11023724 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11023748 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
11023772 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11023796 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:11023769 original size:47 final size:49
Alignment explanation
Indices: 11023702--11023795 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
11023692 AGGAAGTGAA
*
11023702 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
11023749 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
11023796 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:11024038 original size:38 final size:38
Alignment explanation
Indices: 11023987--11024149 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
11023977 CGTTTACAGT
11023987 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
11024025 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
11024056 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
11024094 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
11024132 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
11024150 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:11024049 original size:31 final size:31
Alignment explanation
Indices: 11024011--11024126 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
11024001 AGTATTATGA
11024011 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
11024042 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
11024078 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
11024111 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
11024127 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:11024063 original size:69 final size:69
Alignment explanation
Indices: 11023987--11024126 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
11023977 CGTTTACAGT
11023987 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
11024052 ATGA
66 ATGA
*
11024056 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
11024121 ATGA
66 ATGA
11024125 AA
1 AA
11024127 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:11037103 original size:54 final size:54
Alignment explanation
Indices: 11037021--11037175 Score: 215
Period size: 53 Copynumber: 2.9 Consensus size: 54
11037011 AGGGAAGGAA
*
11037021 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTGTAAAAAAAAAT-AAAAGG
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACT-CAAAAAAAAATGAAAAGG
* * *
11037075 GCCAAAGTGTAAACCCGCAAAGGGCACTTTGAGAC-CAAATAAAAATGGAAAGG
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTCAAAAAAAAATGAAAAGG
* *
11037128 GCCAAGGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAATAAAAA
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTCAA-AA-AAAAA
11037176 AGGGAAAAAG
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
52 9 0.10
53 37 0.42
54 37 0.42
55 1 0.01
56 5 0.06
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.14
Consensus pattern (54 bp):
GCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTCAAAAAAAAATGAAAAGG
Found at i:11038744 original size:44 final size:43
Alignment explanation
Indices: 11038696--11038796 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
11038686 ATCGGCAATG
**
11038696 GAGCAGATTGAAGCCCCAAGCCTTATCTTTCTGAGGTAGCAAGA
1 GAGCAGATTGAAG-AACAAGCCTTATCTTTCTGAGGTAGCAAGA
* ** * *
11038740 GAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTGGCAAGA
1 GAGCAGATTGAAGAACAAGCCTTATCTTTCTGAGGTAGCAAGA
* *
11038783 AAGCAGACTGAAGA
1 GAGCAGATTGAAGA
11038797 TTGAAGATCT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 35 0.74
44 12 0.26
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.23
Consensus pattern (43 bp):
GAGCAGATTGAAGAACAAGCCTTATCTTTCTGAGGTAGCAAGA
Found at i:11038771 original size:43 final size:45
Alignment explanation
Indices: 11038717--11038820 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 45
11038707 AGCCCCAAGC
* **
11038717 CTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
* *
11038760 CTTATCTTTCTGAGGTGGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
**
11038805 CTTATCTCCCTGAGGT
1 CTTATCTTTCTGAGGT
11038821 TGCAGCGGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
43 35 0.67
44 2 0.04
45 15 0.29
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (45 bp):
CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:11038951 original size:176 final size:175
Alignment explanation
Indices: 11038273--11039058 Score: 860
Period size: 176 Copynumber: 4.5 Consensus size: 175
11038263 TGGTGAAAAC
* * *
11038273 TGAAGATCTCATCTCCCTGAAGTTGCAGCAGAGCAGATCGAAGATGGTGAATCTTATCTCCATGT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGTAGATCGAAGATGGCGAATCTTATCTCCATGT
* * *
11038338 ATTGGCAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAGGTAACAATAGAGCAGGTTGAA
66 ATCGGCAATGGAGCAGATTTTACCA-CAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
* * * * * * *
11038403 GAATTGAGTCTTATCTCCCTAAGGTTGTAATGAAGTAGACTGAA-AA
130 GAA-TGAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
* * * * ** *
11038449 TCACAGA--ATAACCCCCT-AAGTAACAGTAGAGTAGATCGAAGATGGCGAATCTTATCTCCATG
1 TGA-AGATCTTATCTCCCTGAAGTTGCAGCAGAGTAGATCGAAGATGGCGAATCTTATCTCCATG
* *
11038511 TATCGGTAATGGAGCA-AATTTA--A-AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
65 TATCGGCAATGGAGCAGATTTTACCACAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
* * *
11038572 GAGT-AAGTCTTATCTTCTTAAGGTAGTAAGGAAGCAGACT-AAGAAT
130 GAATGAA-TCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAG-AT
* * * * * *
11038618 TGAAGATTTTATCTCCCTAAAGTTGCAGCGGAGCAGATTATTGAAGATGGC-AAGTCTTATCTCT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGTAG---ATCGAAGATGGCGAA-TCTTATCTCC
** * *
11038682 ATGTATCGGCAATGGAGCAGATTGAAGCCCCAAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGG
62 ATGTATCGGCAATGGAGCAGATTTTA-CCAC-AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
* * * * *
11038747 TTGAAGAATGAGTCTTATCTTTCTGAGGTGGCAAGAAAGCAGACTGAAGAT
125 TTGAAGAATGAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
* * * * *
11038798 TGAAGATCTTATCTCCCTGAGGTTGCAGCGGAGTGGATCGAAAATGGTGAATCTTATCTCCATGT
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGTAGATCGAAGATGGCGAATCTTATCTCCATGT
* *
11038863 ATCGGCAATAGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGATCAGGTTGAA
66 ATCGGCAATGGAGCAGATTTTACCAC-AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
* *
11038928 GAATGAATTTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGAT
130 GAATGAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
* * * * * *
11038974 TGAAAATCTTATTTCCCTGAAGTTGTAGCAGAGCT-GATCGAAGAAGGCAAATCTTATATCCATG
1 TGAAGATCTTATCTCCCTGAAGTTGCAGCAGAG-TAGATCGAAGATGGCGAATCTTATCTCCATG
11039038 TA-CAGGCAATGGAGCAGATTT
65 TATC-GGCAATGGAGCAGATTT
11039059 AAGCCAGTCC
Statistics
Matches: 508, Mismatches: 80, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
167 3 0.01
168 32 0.06
169 41 0.08
170 7 0.01
171 13 0.03
173 7 0.01
174 92 0.18
175 10 0.02
176 152 0.30
177 45 0.09
178 2 0.00
180 100 0.20
181 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (175 bp):
TGAAGATCTTATCTCCCTGAAGTTGCAGCAGAGTAGATCGAAGATGGCGAATCTTATCTCCATGT
ATCGGCAATGGAGCAGATTTTACCACAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
AATGAATCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
Found at i:11038971 original size:43 final size:43
Alignment explanation
Indices: 11038894--11038977 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
11038884 ACCACTAGCC
* **
11038894 TTATCTCTCTGAGGTAGCAAGAGATCAGGTTGAAGAATGAATT
1 TTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGAATGAATT
*
11038937 TTATCT-TCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAA
1 TTATCTCT-CTGAGGTAGCAAGAG-AGCAGACTGAAGAATGAA
11038978 AATCTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.27
Consensus pattern (43 bp):
TTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGAATGAATT
Found at i:11044645 original size:26 final size:26
Alignment explanation
Indices: 11044615--11044696 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
11044605 ATGCTCAATT
11044615 ACAGTCATACATA-TCATAGGGGTATA
1 ACAGTCAT-CATACTCATAGGGGTATA
* **
11044641 TCAGTCATTTTACCTCATAGGGGTATA
1 ACAGTCATCATA-CTCATAGGGGTATA
* *
11044668 ACAGTCA-CTTTACCTCATAAGGGTATA
1 ACAGTCATC-ATA-CTCATAGGGGTATA
11044695 AC
1 AC
11044697 GATCATTCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.04
26 7 0.15
27 38 0.81
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (26 bp):
ACAGTCATCATACTCATAGGGGTATA
Found at i:11044661 original size:27 final size:27
Alignment explanation
Indices: 11044628--11044696 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
11044618 GTCATACATA
* *
11044628 TCATAGGGGTATATCAGTCATTTTACC
1 TCATAGGGGTATAACAGTCACTTTACC
11044655 TCATAGGGGTATAACAGTCACTTTACC
1 TCATAGGGGTATAACAGTCACTTTACC
*
11044682 TCATAAGGGTATAAC
1 TCATAGGGGTATAAC
11044697 GATCATTCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCACTTTACC
Found at i:11045287 original size:20 final size:20
Alignment explanation
Indices: 11045262--11045302 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
11045252 TTAACACTTA
11045262 ATTCCCAACTAATAATTATT
1 ATTCCCAACTAATAATTATT
11045282 ATTCCCAACTAATAATTATT
1 ATTCCCAACTAATAATTATT
11045302 A
1 A
11045303 CCTGCTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTCCCAACTAATAATTATT
Found at i:11052309 original size:27 final size:27
Alignment explanation
Indices: 11052258--11052330 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
11052248 ATTATACATA
* * * *
11052258 TCATAGGGGTATATCAATCATTTTATC
1 TCATAGGGGTATAACAGTCACTTTACC
*
11052285 TCATAGGGGTATAACAGTTACTTTACC
1 TCATAGGGGTATAACAGTCACTTTACC
* *
11052312 T-TTAGGAGTATAACAGTCA
1 TCATAGGGGTATAACAGTCA
11052331 TTTCATCAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 15 0.39
27 23 0.61
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCACTTTACC
Found at i:11056103 original size:23 final size:23
Alignment explanation
Indices: 11056072--11056211 Score: 91
Period size: 23 Copynumber: 6.1 Consensus size: 23
11056062 GACAATAAAT
11056072 TCTAATGAGCTGAAACGGTAAGC
1 TCTAATGAGCTGAAACGGTAAGC
* * **
11056095 TCTATTGAGTTGAATTGGTAAGC
1 TCTAATGAGCTGAAACGGTAAGC
* * * **
11056118 TCCAATAAGTTGAAATAGTAAGC
1 TCTAATGAGCTGAAACGGTAAGC
* * * *
11056141 TCTTACGAGCTGAATCCGTAAGC
1 TCTAATGAGCTGAAACGGTAAGC
* ***
11056164 TCCAATGAGCTGAAATAATAAGC
1 TCTAATGAGCTGAAACGGTAAGC
* * * *
11056187 TCTTACGAGCTGAATCAGTAAGC
1 TCTAATGAGCTGAAACGGTAAGC
11056210 TC
1 TC
11056212 ATAGAGCTGT
Statistics
Matches: 87, Mismatches: 30, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 87 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (23 bp):
TCTAATGAGCTGAAACGGTAAGC
Found at i:11056139 original size:46 final size:46
Alignment explanation
Indices: 11056112--11056211 Score: 164
Period size: 46 Copynumber: 2.2 Consensus size: 46
11056102 AGTTGAATTG
*
11056112 GTAAGCTCCAATAAGTTGAAATAGTAAGCTCTTACGAGCTGAATCC
1 GTAAGCTCCAATAAGCTGAAATAGTAAGCTCTTACGAGCTGAATCC
* * *
11056158 GTAAGCTCCAATGAGCTGAAATAATAAGCTCTTACGAGCTGAATCA
1 GTAAGCTCCAATAAGCTGAAATAGTAAGCTCTTACGAGCTGAATCC
11056204 GTAAGCTC
1 GTAAGCTC
11056212 ATAGAGCTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (46 bp):
GTAAGCTCCAATAAGCTGAAATAGTAAGCTCTTACGAGCTGAATCC
Found at i:11061835 original size:32 final size:30
Alignment explanation
Indices: 11061777--11061874 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 30
11061767 TAAGATTATT
11061777 TTTATATTAATT--TTAATATTTA-AAATACAA
1 TTTATATTAATTACTTAA-ATTTATAAAT--AA
*
11061807 TTTATA-TATTTTACTTAAATTTATAAATAA
1 TTTATATTA-ATTACTTAAATTTATAAATAA
* *
11061837 TTTATATTAATTACTTAAAATTATTTAA-AA
1 TTTATATTAATTACTTAAATTTA-TAAATAA
11061867 TTTATATT
1 TTTATATT
11061875 TCATATACAT
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
29 2 0.03
30 38 0.66
31 10 0.17
32 8 0.14
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (30 bp):
TTTATATTAATTACTTAAATTTATAAATAA
Found at i:11065886 original size:131 final size:131
Alignment explanation
Indices: 11065645--11065893 Score: 401
Period size: 131 Copynumber: 1.9 Consensus size: 131
11065635 TAATCATTCA
* **
11065645 AAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAACAATTCGCGGAATCGTGCCCTAACGTGT
*
11065710 TGGGTTGCAATATCGTGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
66 TGGGTTGCAATATCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
11065775 T
131 T
* *
11065776 AAAATTCTTCAAAATGAAGACGAGATTCGATATTTAACAATTCGCGGAATCTTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAACAATTCGCGGAATCGTGCCCTAACGTGT
* * *
11065841 TGGGTTGCAATTTCGCGTTTGCTC-AAAGTAATCGAGTATCCCTTCAAAATTTC
66 TGGGTTGCAATATCGCGTTTGCTCGAAA-TAATCGAATATCACTTCAAAATTTC
11065894 CTTTCATATC
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
130 3 0.03
131 105 0.97
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAACAATTCGCGGAATCGTGCCCTAACGTGT
TGGGTTGCAATATCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
T
Found at i:11066159 original size:131 final size:130
Alignment explanation
Indices: 11065952--11066252 Score: 297
Period size: 130 Copynumber: 2.3 Consensus size: 130
11065942 TTGACAATTC
* * * * * * * *
11065952 GAGAATCATGCCCTATTGTGCTGGGTTGTGATTTCTTTTTTGCTCAAAACGATTGAACATTCCTT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTCTTATTGGCTCAAAACAATTGAACATCCCTT
* **
11066017 TACATTCTCACTTATGTTT-ATAAAAAAAAC-TTAAAAACAAAGACGATGTTCAATATTTCGCGA
66 TACATTCTCACTCACATTTCAT---AAAAACTTTAAAAACAAAGACGATGTTCAATATTTCGCGA
11066080 TTT
128 TTT
* *
11066083 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTT-TTCATTGGTTCGAAACAATTGAACATCCCT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTCTT-ATTGGCTCAAAACAATTGAACATCCCT
* * * ** * * * *
11066147 TTGGA-ATT-TCACTCACATTTCCTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGCGA
65 TT--ACATTCTCACTCACATTTCATAAAAACTTTAAAAACAAAGACGATGTTCAATATTTCGCGA
11066210 TTT
128 TTT
* *
11066213 GAGAATCGAGCCCTATCGTGTTGGGTTGCGCTTTCTTATT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTCTTATT
11066253 TGTCCAAAAT
Statistics
Matches: 140, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
129 5 0.04
130 66 0.47
131 64 0.46
132 4 0.03
133 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (130 bp):
GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTCTTATTGGCTCAAAACAATTGAACATCCCTT
TACATTCTCACTCACATTTCATAAAAACTTTAAAAACAAAGACGATGTTCAATATTTCGCGATTT
Found at i:11077934 original size:44 final size:44
Alignment explanation
Indices: 11077856--11078373 Score: 646
Period size: 44 Copynumber: 11.8 Consensus size: 44
11077846 CGAATCCTGT
* ** *
11077856 AGATTTGACATCTCTGTATTGGTGGAGAGCAGATCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* * * * *
11077900 AGATTTGGCATCTCTGTATCGACAGGGAGTAGATCGAAGATAAC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* **
11077944 AGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATTAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* *
11077988 -GTATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGATAGC
1 AG-ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
*
11078032 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC-AAGGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA-GATAGC
*
11078076 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* * * *
11078120 AAATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAGGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* *
11078164 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* * * *
11078208 AGATTTGGCATCTCTGTGTTGACATAGAACAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* * * * * *
11078252 AGGTTTGGCGTCTCTATATTGGCAGAGAGTAGATCAAAAATAGC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
* ** *
11078296 AGATTTGGCATCTCTGTGTTGATAGAGAGCAGATCAAAGAT-GAC
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAG-C
* *
11078340 GGATTTGGCATCTCTGTACTGGCAGAGAGCAGAT
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
11078374 AAAGAATAAC
Statistics
Matches: 412, Mismatches: 57, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
43 4 0.01
44 405 0.98
45 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
Found at i:11080221 original size:2 final size:2
Alignment explanation
Indices: 11080204--11080248 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
11080194 ATTTATATTA
* *
11080204 AT AT AC AT AT -T AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11080245 AT AT
1 AT AT
11080249 TTCTAAACCT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11080916 original size:2 final size:2
Alignment explanation
Indices: 11080911--11080939 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11080901 CTTGTCAACC
11080911 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11080940 CTAGCTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11081499 original size:131 final size:132
Alignment explanation
Indices: 11081316--11081565 Score: 394
Period size: 131 Copynumber: 1.9 Consensus size: 132
11081306 TAATCATTCA
* * * *
11081316 AAAATTCTTCAAAAACGAAGACGAAATTCGATGTTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAATTCTTCAAAAACGAAGACGAAATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACATA
**
11081381 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTT
11081446 TT
131 TT
* *
11081448 AAAATTCTTC-AAAACGAAGACGAGATTCGATATTTAGCAATTCGTGAAATCGTGCCCTAACATA
1 AAAATTCTTCAAAAACGAAGACGAAATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACATA
* * *
11081512 TTGGGTTGCAATTTCACGTTTGCTCAAAGTAATCGAGTATCCCTTCAAAATTTC
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTC
11081566 CTTTCATATC
Statistics
Matches: 107, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
131 97 0.91
132 10 0.09
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (132 bp):
AAAATTCTTCAAAAACGAAGACGAAATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACATA
TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTT
TT
Found at i:11081958 original size:130 final size:130
Alignment explanation
Indices: 11081723--11081961 Score: 311
Period size: 130 Copynumber: 1.8 Consensus size: 130
11081713 AAAATACTTA
* *
11081723 AAAAAGAAGGCGATGTTCAATATTTCGCGATTTGAGAATTGTGCCCTATCGTGCTGGGTTGCGCT
1 AAAAAGAAGGCGATGTTCAATATTTCGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCT
* * * *
11081788 TTTTCATTGGTTCGAAACAATTGAACATCCCTTTGGAATTTCACTCACATTTCCTAAAATCTTTC
66 TTTTCATTGGTCCAAAACAATCGAACATCCCTTTGAAATTTCACTCACATTTCCTAAAATCTTTC
* ** * * *
11081853 AAAATGAAGGCGATGTTTGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGTTGGGTTGCGCT
1 AAAAAGAAGGCGATGTTCAATATTTCGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCT
* * *
11081918 TTCTT-ATTTGTCCAAAATAATCGAATATCTCC-TTGAAATTTCAC
66 TT-TTCATTGGTCCAAAACAATCGAACATC-CCTTTGAAATTTCAC
11081962 ACGTATTTTA
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
130 88 0.96
131 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (130 bp):
AAAAAGAAGGCGATGTTCAATATTTCGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCT
TTTTCATTGGTCCAAAACAATCGAACATCCCTTTGAAATTTCACTCACATTTCCTAAAATCTTTC
Found at i:11082820 original size:31 final size:30
Alignment explanation
Indices: 11082785--11082877 Score: 82
Period size: 31 Copynumber: 3.1 Consensus size: 30
11082775 AGTATAAATG
11082785 TGAAAATATGAATGATTAAAGGGTATGGAAA
1 TGAAAAT-TGAATGATTAAAGGGTATGGAAA
** * *
11082816 TGAAAACTTGACCGATTATAGGGTAT-GATA
1 TGAAAA-TTGAATGATTAAAGGGTATGGAAA
* * *
11082846 TGCAAATGTGAATGA-TACAGGGTATGAAAA
1 TGAAAAT-TGAATGATTAAAGGGTATGGAAA
11082876 TG
1 TG
11082878 TAATAGTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
29 10 0.20
30 17 0.35
31 21 0.43
32 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.27
Consensus pattern (30 bp):
TGAAAATTGAATGATTAAAGGGTATGGAAA
Found at i:11084460 original size:22 final size:21
Alignment explanation
Indices: 11084435--11084487 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
11084425 GATTTGATAC
11084435 ATTTACTAT-TTTCTTTCTCATT
1 ATTT-CTATATTTCTTT-TCATT
*
11084457 ATTTCTTTATTTCTTTTCATTTT
1 ATTTCTATATTTCTTTTCA--TT
11084480 ATTTCTAT
1 ATTTCTAT
11084488 CATTATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 6 0.23
22 11 0.42
23 9 0.35
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTCTATATTTCTTTTCATT
Found at i:11089878 original size:18 final size:18
Alignment explanation
Indices: 11089855--11089909 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
11089845 CTTGGCCTAT
*
11089855 TGCAGTAATAGTAAGCAG
1 TGCAGTAACAGTAAGCAG
* *
11089873 TGCAGTAACAGCAAACAG
1 TGCAGTAACAGTAAGCAG
*
11089891 TGCTGTAACAGTAAGCAG
1 TGCAGTAACAGTAAGCAG
11089909 T
1 T
11089910 ATGCAAGTCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAAGCAG
Found at i:11093312 original size:21 final size:21
Alignment explanation
Indices: 11093282--11093321 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
11093272 ATTGCTTTTA
*
11093282 ATGTCACGACACAGCCTTATG
1 ATGTCACGACACACCCTTATG
*
11093303 ATGTCGCGACACACCCTTA
1 ATGTCACGACACACCCTTA
11093322 AAGACACCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (21 bp):
ATGTCACGACACACCCTTATG
Found at i:11093809 original size:131 final size:131
Alignment explanation
Indices: 11093664--11093928 Score: 512
Period size: 131 Copynumber: 2.0 Consensus size: 131
11093654 TGTGATCAAA
* *
11093664 CTCTGTGAGGATTCTACATTCATTTCCAATACAAACCAAACTTCTTCTAAACTTTATACTCTTGA
1 CTCTATGAGGATTCTACATTCAGTTCCAATACAAACCAAACTTCTTCTAAACTTTATACTCTTGA
11093729 ATTATTATTTATGTTTATTCTTTCTATCAAGCTTATATTGTTTATGAGATCCATGAGGAACTAAT
66 ATTATTATTTATGTTTATTCTTTCTATCAAGCTTATATTGTTTATGAGATCCATGAGGAACTAAT
11093794 C
131 C
11093795 CTCTATGAGGATTCTACATTCAGTTCCAATACAAACCAAACTTCTTCTAAACTTTATACTCTTGA
1 CTCTATGAGGATTCTACATTCAGTTCCAATACAAACCAAACTTCTTCTAAACTTTATACTCTTGA
11093860 ATTATTATTTATGTTTATTCTTTCTATCAAGCTTATATTGTTTATGAGATCCATGAGGAACTAAT
66 ATTATTATTTATGTTTATTCTTTCTATCAAGCTTATATTGTTTATGAGATCCATGAGGAACTAAT
11093925 C
131 C
11093926 CTC
1 CTC
11093929 CTGTAGGGGA
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 132 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.42
Consensus pattern (131 bp):
CTCTATGAGGATTCTACATTCAGTTCCAATACAAACCAAACTTCTTCTAAACTTTATACTCTTGA
ATTATTATTTATGTTTATTCTTTCTATCAAGCTTATATTGTTTATGAGATCCATGAGGAACTAAT
C
Found at i:11098160 original size:28 final size:30
Alignment explanation
Indices: 11098118--11098176 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
11098108 TGTCCAAAAT
*
11098118 TATTTAATTAGTATTTAAATTT-T-TTTAA
1 TATTTAATTAATATTTAAATTTATATTTAA
* *
11098146 TATTTAGTTAATATTTGAATTTATATTTAA
1 TATTTAATTAATATTTAAATTTATATTTAA
11098176 T
1 T
11098177 GACATATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 19 0.73
29 1 0.04
30 6 0.23
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (30 bp):
TATTTAATTAATATTTAAATTTATATTTAA
Found at i:11098344 original size:20 final size:20
Alignment explanation
Indices: 11098321--11098374 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
11098311 GTTCAAAAAA
11098321 TTATACATTTTTTAATTA-AT
1 TTATA-ATTTTTTAATTATAT
*
11098341 TTAT-ATTTTTTAA-AATAT
1 TTATAATTTTTTAATTATAT
*
11098359 TTTTAATTTTTTAATT
1 TTATAATTTTTTAATT
11098375 TATGTCCATC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.04
18 14 0.50
19 9 0.32
20 4 0.14
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATAATTTTTTAATTATAT
Found at i:11099209 original size:14 final size:15
Alignment explanation
Indices: 11099185--11099218 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
11099175 TTTATATATT
11099185 TTTATAAATTTTGAA
1 TTTATAAATTTTGAA
11099200 TTTA-AAATTTTGAA
1 TTTATAAATTTTGAA
*
11099214 GTTAT
1 TTTAT
11099219 TTGTTAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TTTATAAATTTTGAA
Found at i:11099688 original size:11 final size:11
Alignment explanation
Indices: 11099672--11099697 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11099662 TAAAATAATT
11099672 ATTTTATTATA
1 ATTTTATTATA
11099683 ATTTTATTATA
1 ATTTTATTATA
11099694 ATTT
1 ATTT
11099698 AATTTCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTATTATA
Found at i:11100573 original size:16 final size:16
Alignment explanation
Indices: 11100552--11100582 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11100542 TAATCACTTA
11100552 TTTTATCTTTTTTAAT
1 TTTTATCTTTTTTAAT
*
11100568 TTTTATTTTTTTTAA
1 TTTTATCTTTTTTAA
11100583 ATTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATCTTTTTTAAT
Found at i:11101376 original size:24 final size:26
Alignment explanation
Indices: 11101329--11101380 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11101319 GTTCAAAGTG
11101329 GCGGGCAAAAAATATAAAAGAATTGA
1 GCGGGCAAAAAATATAAAAGAATTGA
11101355 GCGGGCAAAAAATAT-AAA-AATTGA
1 GCGGGCAAAAAATATAAAAGAATTGA
11101379 GC
1 GC
11101381 ATCCATCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 8 0.31
25 3 0.12
26 15 0.58
ACGTcount: A:0.52, C:0.10, G:0.23, T:0.15
Consensus pattern (26 bp):
GCGGGCAAAAAATATAAAAGAATTGA
Found at i:11106212 original size:2 final size:2
Alignment explanation
Indices: 11106207--11106347 Score: 282
Period size: 2 Copynumber: 70.5 Consensus size: 2
11106197 TATATATATA
11106207 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11106249 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11106291 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11106333 TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG T
11106348 CTCAAGTCAA
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 139 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:11111123 original size:15 final size:15
Alignment explanation
Indices: 11111105--11111135 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
11111095 TTCATAATTT
11111105 TTTTTTAAATTTTTA
1 TTTTTTAAATTTTTA
11111120 TTTTTTAAATTTTTA
1 TTTTTTAAATTTTTA
11111135 T
1 T
11111136 AAATTACGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTTAAATTTTTA
Found at i:11111751 original size:31 final size:31
Alignment explanation
Indices: 11111716--11111799 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
11111706 ATTAACAACC
*
11111716 CAATGACTTAAATAAAAACTTTTGAATAGTT
1 CAATGACTTAAATAAAAACTTTTCAATAGTT
* *
11111747 CAATGACTTAAATGAAAACTTATCAATAGTT
1 CAATGACTTAAATAAAAACTTTTCAATAGTT
* * * *
11111778 TAGTGA-TTAAATTATAACTTTT
1 CAATGACTTAAATAAAAACTTTT
11111800 TTTAGTTAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 13 0.29
31 32 0.71
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTTCAATAGTT
Found at i:11120803 original size:21 final size:21
Alignment explanation
Indices: 11120773--11120812 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
11120763 CAATCTATTA
*
11120773 TGTTTGTAGGTTTATAAAAAT
1 TGTTTATAGGTTTATAAAAAT
11120794 TGTTTATAGGTTTATAAAA
1 TGTTTATAGGTTTATAAAA
11120813 TATGTATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.47
Consensus pattern (21 bp):
TGTTTATAGGTTTATAAAAAT
Found at i:11125191 original size:749 final size:744
Alignment explanation
Indices: 11123053--11126045 Score: 5283
Period size: 749 Copynumber: 4.0 Consensus size: 744
11123043 AATTTCGTTA
11123053 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
1 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
* *
11123118 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATATAAAATTAT
66 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATACAAAAATAT
*
11123183 GGATTATATTAGTAGATAATCTAAACATATCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
131 GGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
* *
11123248 CGACTAATATGTCGTCATCATATCTAAGGAGAGATACCTTGTTTTGGGTATCAAAGTGATAACTA
196 AGACTAATATGTCGTCATCATATCTAAGAAGAGATACCTTGTTTTGGGTATCAAAGTGATAACTA
* * *
11123313 CTAAAAGGTAAATATATAGATGTGATTGATTTGACTAGTGGTACATTAAATATGAGCCAAGTAGA
261 CTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCCAAGTAGA
*
11123378 ATAGATTCTAGATCCATTTATGGATTTATTCACTTGTAACATTCATAGTGTGGCATACTTTAATC
326 ATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACATTCATAGTGTGGCATACTTTAATC
11123443 CTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGAGTTCA
391 CTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGAGTTCA
*
11123508 AATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTGCAGTATGTAGCATCATTCT
456 AATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAGCATCATTCT
* *
11123573 ACAATAGTGGAATTCATAGCCCAATAAAGGGTAAA-AGATATCCTCTCATCAGTATTACATGATA
521 ACAATAGTGGAATTCATAGCCCAATAAAGGGTAAATA-ATATCCTCTCATCGGCATTACATGATA
* *
11123637 GTTGATAAGTAAAACATGGTCATCAGTCATTTGTCTTTGTGATAAATGATTAAGTTACTATTTGA
585 GTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTACTATTTGA
* *
11123702 TAGTAGTTGACTTATTATAGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATATAGG
650 TAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATATTGG
*
11123767 GAGAACAAATTTATCCTAAAAAGATTAAGG
715 GAGAACAAATTTATCCTAAAGAGATTAAGG
*
11123797 ATATCTTTGTATGTTGTCCTCAACGATTTTGTATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
1 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
* *
11123862 TTA-TATATCTAACGTTTAACTAAAATTAAGTAGTATTACATGGTCGAATCTTAATACAAAAATA
66 TTAGT-TATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATACAAAAATA
*
11123926 TAGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGA
130 TGGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGA
*
11123991 AAGACTAATATGTCGTCATCATATCTAATG-AGAGATACCTTGTTTTAGGTATCAAAGTTCAAAG
195 AAGACTAATATGTCGTCATCATATCTAA-GAAGAGATACCTTGTTTT-GG-GT---A--TCAAAG
11124055 TGATAACTACTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAG
252 TGATAACTACTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAG
* *
11124120 CCAAGTAGAATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACGTTCATAGTATGGCAT
317 CCAAGTAGAATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACATTCATAGTGTGGCAT
*
11124185 ACTTTAATCCTGAGTGGATAATGGACAATGTATGCACAACTATCTACTTTAGTGTAAATGAAAGC
382 ACTTTAATCCTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGC
*
11124250 CTGAGTTCAAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATTACTTCTACAGTATGTAG
447 CTGAGTTCAAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAG
* *
11124315 CATCATTCTACAATAGTGGAATTCATAGCCCGATAAAGGGTAAATGATATCCTCTCATCGGCATT
512 CATCATTCTACAATAGTGGAATTCATAGCCCAATAAAGGGTAAATAATATCCTCTCATCGGCATT
*
11124380 ATATGATAGTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTA
577 ACATGATAGTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTA
*
11124445 CTATTTGATAGTAGTTGACTTATTACGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAAT
642 CTATTTGATAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAAT
11124510 TATATTGGGAGAACAAATTTATCCTAAAGAGATTAAGG
707 TATATTGGGAGAACAAATTTATCCTAAAGAGATTAAGG
* *
11124548 ATATCTTTGTATGTTGTCCTTAACGATTTTGCATGCAAAGCAAAATGAAAGAAAGTATTGGCTCA
1 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
* *
11124613 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTATGTAGTCGAATCGTAATACAAAAATAT
66 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATACAAAAATAT
*
11124678 GGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGACCGAGAAAATAAATTGAA
131 GGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
11124743 AGACTAATATGTCGTCATCATATCTAAGAAGAGATACCTTGTTTTGGGTATCAAAGTGATAACTA
196 AGACTAATATGTCGTCATCATATCTAAGAAGAGATACCTTGTTTTGGGTATCAAAGTGATAACTA
* *
11124808 CTAAAAGGTAAAGTAAAGATATAGATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCTAA
261 CTAAAA-G----GTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCCAA
* **
11124873 GTAGAATAGATTCTAAATCCATTTATGGATTTATTCACTTGTGATGTTCATAGTGTGGCATACTT
321 GTAGAATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACATTCATAGTGTGGCATACTT
* *
11124938 TTATCATGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGA
386 TAATCCTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGA
* *
11125003 GTTCAAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTGCGGTATGTAGCATC
451 GTTCAAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAGCATC
* *
11125068 ATTCTACAATAATGGAATTCATAGCCAAATAAAGGGTAAATAATATCCTCTCATCGGCATTACAT
516 ATTCTACAATAGTGGAATTCATAGCCCAATAAAGGGTAAATAATATCCTCTCATCGGCATTACAT
*
11125133 GATAGTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATAATTAAATTACTAT
581 GATAGTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTACTAT
11125198 TTGATAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATA
646 TTGATAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATA
11125263 TTGGGAGAACAAATTTATCCTAAAGAGATTAAGG
711 TTGGGAGAACAAATTTATCCTAAAGAGATTAAGG
11125297 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
1 ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
* *
11125362 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGATCGAATCGTAATACAAAATTAT
66 TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATACAAAAATAT
*
11125427 GGATTATATTAGAAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
131 GGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
11125492 AGACTAATATGTCGTCATCATATCTAA-AGAGAGATACCTTGTTTTGGGTATCAAAGTGATAACT
196 AGACTAATATGTCGTCATCATATCTAAGA-AGAGATACCTTGTTTTGGGTATCAAAGTGATAACT
11125556 ACTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCCAAGTAG
260 ACTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCCAAGTAG
* *
11125621 AATAGATTCTAGATCTATTTATGGATTTATTCACTTGTGACATTCATAGTGTGACATACTTTAAT
325 AATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACATTCATAGTGTGGCATACTTTAAT
11125686 CCTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGAGTTC
390 CCTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGAGTTC
11125751 AAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAGCATCATTC
455 AAATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAGCATCATTC
** *
11125816 TACAATAGTGGAATTCATAGCCCAATAAAGGGTAAACGATATCCTCTCATAGGCATTACATGATA
520 TACAATAGTGGAATTCATAGCCCAATAAAGGGTAAATAATATCCTCTCATCGGCATTACATGATA
*
11125881 GTTGATAAGTAAAACATGGCCATTAGTCATTTGTCTTTGTGATAAATGATTAAATTACTATTTGA
585 GTTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTACTATTTGA
*
11125946 TAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATATTAG
650 TAGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATATTGG
* *
11126011 GAGAAAAAATTTATCCAAAAGAGATTAAGG
715 GAGAACAAATTTATCCTAAAGAGATTAAGG
11126041 ATATC
1 ATATC
11126046 CTATGAGGGT
Statistics
Matches: 2145, Mismatches: 86, Indels: 36
0.95 0.04 0.02
Matches are distributed among these distances:
743 1 0.00
744 710 0.33
745 4 0.00
746 2 0.00
748 2 0.00
749 717 0.33
750 3 0.00
751 705 0.33
752 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (744 bp):
ATATCTTTGTATGTTGTCCTCAACGATTTTGCATGCAAAGCAAAATGAAAGAAAATATTGGCTCA
TTAGTTATCTAACGTTTAACTAAAATTAAGTAGTATTACGTGGTCGAATCGTAATACAAAAATAT
GGATTATATTAGTAGATAATCTAAACATGTCCTTAGTCTAATCAAGATCGAGAAAATAAATTGAA
AGACTAATATGTCGTCATCATATCTAAGAAGAGATACCTTGTTTTGGGTATCAAAGTGATAACTA
CTAAAAGGTAAAGATATAAATGTGATTGATTTGACTAGTAGTACATTAAATATGAGCCAAGTAGA
ATAGATTCTAGATCCATTTATGGATTTATTCACTTGTGACATTCATAGTGTGGCATACTTTAATC
CTGAGTGGATAATGGACAACGTATGCACAACTATCTACTTTAGTGTAAATGAAAGCCTGAGTTCA
AATAGATAAGGAACCTAAAGTTGGTATGTTGGATATATGACTTCTACAGTATGTAGCATCATTCT
ACAATAGTGGAATTCATAGCCCAATAAAGGGTAAATAATATCCTCTCATCGGCATTACATGATAG
TTGATAAGTAAAACATGGCCATCAGTCATTTGTCTTTGTGATAAATGATTAAATTACTATTTGAT
AGTAGTTGACTTATTATGGAAGAAGATGTAGTAGTTACCATGAGATAAAATAGAATTATATTGGG
AGAACAAATTTATCCTAAAGAGATTAAGG
Found at i:11131561 original size:49 final size:47
Alignment explanation
Indices: 11131508--11131620 Score: 138
Period size: 49 Copynumber: 2.4 Consensus size: 47
11131498 AGGTGGAAGA
*
11131508 ATGTGGCAATTTATCTGCAAAACTGGTGGCTTTGTCCATAAATATT-ATT
1 ATGTGGCAGTTTATCTGCAAAACTGGTGGC-TTGTCCA-AAAT-TTGATT
* * * *
11131557 ATGTGGCAGTATATCTACAAAAGTGGTGGCTTGTCCACAATTTGATT
1 ATGTGGCAGTTTATCTGCAAAACTGGTGGCTTGTCCAAAATTTGATT
*
11131604 ATGTGACAGTTTATCTG
1 ATGTGGCAGTTTATCTG
11131621 TATTACCATG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 2 0.04
47 20 0.36
48 7 0.13
49 26 0.47
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.37
Consensus pattern (47 bp):
ATGTGGCAGTTTATCTGCAAAACTGGTGGCTTGTCCAAAATTTGATT
Found at i:11133470 original size:15 final size:15
Alignment explanation
Indices: 11133434--11133471 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
11133424 CATAAAGTCA
*
11133434 TTTCAACCCTTCACT
1 TTTCAAGCCTTCACT
11133449 TTTCAAGCCTTC-CAT
1 TTTCAAGCCTTCAC-T
11133464 TTTCAAGC
1 TTTCAAGC
11133472 ACCTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.05
15 20 0.95
ACGTcount: A:0.21, C:0.34, G:0.05, T:0.39
Consensus pattern (15 bp):
TTTCAAGCCTTCACT
Found at i:11135118 original size:11 final size:11
Alignment explanation
Indices: 11135102--11135126 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11135092 ATCTTTATTA
11135102 TTTAGAACTTG
1 TTTAGAACTTG
11135113 TTTAGAACTTG
1 TTTAGAACTTG
11135124 TTT
1 TTT
11135127 TCAAAGTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (11 bp):
TTTAGAACTTG
Found at i:11141303 original size:26 final size:26
Alignment explanation
Indices: 11141281--11141335 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
11141271 TTTTTATGTG
11141281 TTAAAATATA-TATATTAAATTATTA
1 TTAAAATATAGTATATTAAATTATTA
* * *
11141306 TTATATTATAGTATATTATATTATATA
1 TTAAAATATAGTATATTAAATTAT-TA
11141333 TTA
1 TTA
11141336 TATTATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 12 0.48
27 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TTAAAATATAGTATATTAAATTATTA
Found at i:11141312 original size:5 final size:5
Alignment explanation
Indices: 11141286--11141343 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
11141276 ATGTGTTAAA
* *
11141286 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
11141335 ATATT ATAT
1 ATATT ATAT
11141344 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:11141322 original size:10 final size:9
Alignment explanation
Indices: 11141287--11141344 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
11141277 TGTGTTAAAA
11141287 TATATATAT
1 TATATATAT
*
11141296 TAAAT-TAT
1 TATATATAT
11141304 TAT-TATAT
1 TATATATAT
11141312 TATAGTATAT
1 TATA-TATAT
11141322 TATAT-TA-
1 TATATATAT
11141329 TATATTATAT
1 TATA-TATAT
11141339 TATATA
1 TATATA
11141345 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:11141334 original size:12 final size:12
Alignment explanation
Indices: 11141289--11141344 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
11141279 TGTTAAAATA
*
11141289 TATATATTAAAT
1 TATATATTATAT
11141301 TAT-TATTATATT
1 TATATATTATA-T
11141313 ATAGTATATTATAT
1 -TA-TATATTATAT
11141327 TATATATTATAT
1 TATATATTATAT
11141339 TATATA
1 TATATA
11141345 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:11142682 original size:18 final size:19
Alignment explanation
Indices: 11142659--11142697 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
11142649 ATATATATAT
11142659 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
11142677 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
11142696 AT
1 AT
11142698 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:11143047 original size:39 final size:39
Alignment explanation
Indices: 11142937--11143071 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 39
11142927 GACCTCGAGT
* * * *
11142937 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** * ** * *
11142978 CGATGAGGTACTAGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
11143016 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
11143055 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
11143072 CCATATTGGT
Statistics
Matches: 71, Mismatches: 21, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
38 17 0.24
39 35 0.49
40 4 0.06
41 15 0.21
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:11143215 original size:18 final size:19
Alignment explanation
Indices: 11143194--11143234 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
11143184 AATGAAATAA
11143194 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
11143212 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
11143231 GAAA
1 GAAA
11143235 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:11150086 original size:45 final size:45
Alignment explanation
Indices: 11150022--11150111 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
11150012 TTTACCATTG
*
11150022 CAAGATAATCCATTGTTTGACGAGATTAACAATAATAACCCAGAT
1 CAAGACAATCCATTGTTTGACGAGATTAACAATAATAACCCAGAT
11150067 CAAGACAATCCATTGTTTGACGAGATTAACAATAATAACCCAGAT
1 CAAGACAATCCATTGTTTGACGAGATTAACAATAATAACCCAGAT
11150112 GACTTACCAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (45 bp):
CAAGACAATCCATTGTTTGACGAGATTAACAATAATAACCCAGAT
Found at i:11152145 original size:36 final size:36
Alignment explanation
Indices: 11152105--11152175 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
11152095 TTGTGAACCA
* * *
11152105 TGTTAACTTGGTGAATTATATTATTATTGCGAACTG
1 TGTTAACTTAGTGAATTATATTAATATGGCGAACTG
* * *
11152141 TGTTAATTTAGTGATTTGTATTAATATGGCGAACT
1 TGTTAACTTAGTGAATTATATTAATATGGCGAACT
11152176 ATATTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (36 bp):
TGTTAACTTAGTGAATTATATTAATATGGCGAACTG
Found at i:11152904 original size:34 final size:35
Alignment explanation
Indices: 11152832--11152929 Score: 121
Period size: 34 Copynumber: 2.9 Consensus size: 35
11152822 TGTGGTGTGA
* * *
11152832 ATGAATTATTATATTGAATGAACTGTTA-TATTGT
1 ATGAACTATTATATTGAATGAATTGTTATTATTGC
11152866 ATGAACTATTATATTGAATGAATTGTTATTA-TGC
1 ATGAACTATTATATTGAATGAATTGTTATTATTGC
* *
11152900 ATGAACTGTTAT-TTCATATGAATTGTTATT
1 ATGAACTATTATATTGA-ATGAATTGTTATT
11152930 TTATGCGAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
33 3 0.05
34 52 0.91
35 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (35 bp):
ATGAACTATTATATTGAATGAATTGTTATTATTGC
Found at i:11152912 original size:17 final size:17
Alignment explanation
Indices: 11152829--11152911 Score: 96
Period size: 17 Copynumber: 4.9 Consensus size: 17
11152819 CGATGTGGTG
* *
11152829 TGAATGAATTATTATAT
1 TGAATGAACTGTTATAT
11152846 TGAATGAACTGTTATAT
1 TGAATGAACTGTTATAT
* *
11152863 TGTATGAACTATTATAT
1 TGAATGAACTGTTATAT
*
11152880 TGAATGAATTGTTAT-T
1 TGAATGAACTGTTATAT
*
11152896 ATGCATGAACTGTTAT
1 -TGAATGAACTGTTAT
11152912 TTCATATGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
16 1 0.02
17 55 0.98
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.45
Consensus pattern (17 bp):
TGAATGAACTGTTATAT
Found at i:11152920 original size:17 final size:16
Alignment explanation
Indices: 11152849--11152934 Score: 61
Period size: 17 Copynumber: 5.2 Consensus size: 16
11152839 ATTATATTGA
*
11152849 ATGAACTGTTATATTGT
1 ATGAACTGTTAT-TTAT
*
11152866 ATGAACTATTATATTGA-
1 ATGAACTGTTAT-TT-AT
*
11152883 ATGAATTGTTA-TTAT
1 ATGAACTGTTATTTAT
11152898 GCATGAACTGTTATTTCAT
1 --ATGAACTGTTATTT-AT
*
11152917 ATGAATTGTTATTT-T
1 ATGAACTGTTATTTAT
11152932 ATG
1 ATG
11152935 CGAACTACCT
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
14 1 0.02
15 6 0.11
17 46 0.81
18 2 0.04
19 2 0.04
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (16 bp):
ATGAACTGTTATTTAT
Found at i:11155946 original size:19 final size:19
Alignment explanation
Indices: 11155915--11155958 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
11155905 TTTTAGGTTT
*
11155915 TTTGGGCTGGGTT-ATTGG
1 TTTGGGCTGGGTTGATTAG
11155933 TTTGGGCTTGGGTTGATTAG
1 TTTGGGC-TGGGTTGATTAG
11155953 TTTGGG
1 TTTGGG
11155959 TTTGTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 6 0.26
20 10 0.43
ACGTcount: A:0.07, C:0.05, G:0.43, T:0.45
Consensus pattern (19 bp):
TTTGGGCTGGGTTGATTAG
Found at i:11157717 original size:99 final size:95
Alignment explanation
Indices: 11157608--11157847 Score: 252
Period size: 96 Copynumber: 2.4 Consensus size: 95
11157598 AATTTTAAGG
* *
11157608 TTTTAAGAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATT-ATTAAATTAATTACT-AAT
1 TTTTAAGAAAAAATCAAATAAATTAGGGTTTAG-G---GTTAATTGAGTAAATTAATTA-TAAAT
* * *
11157671 TTTAAAAAATTAGATTATGG-TTTAGTGTTTATGGT
61 TTAAAAAAATTAGATTA-GGATTTAGGGTTTAGGGT
*
11157706 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTAA
1 TTTTAA-GAAAAAATCAAATAAATTAGGGTTTAGGGTTAATTGAGTAAATTAATTATAAATTTAA
11157771 AAAAATTAGATTAGGATTTTAGGGTTTAGGGTTTT
65 AAAAATTAGATTAGGA-TTTAGGGTTTAGGG---T
*
11157806 AGGGTATTTAAGAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 ----T-TTTAAGAAAAAATCAAATAAATTAGGGTTTAGGGTT
11157848 TAGGGTAACT
Statistics
Matches: 122, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
95 9 0.07
96 31 0.25
97 12 0.10
98 7 0.06
99 26 0.21
100 1 0.01
104 31 0.25
105 5 0.04
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (95 bp):
TTTTAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTAATTGAGTAAATTAATTATAAATTTAAA
AAAATTAGATTAGGATTTAGGGTTTAGGGT
Found at i:11157805 original size:15 final size:15
Alignment explanation
Indices: 11157781--11157810 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11157771 AAAAATTAGA
11157781 TTAGGATTTTAGGGT
1 TTAGGATTTTAGGGT
*
11157796 TTAGGGTTTTAGGGT
1 TTAGGATTTTAGGGT
11157811 ATTTAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (15 bp):
TTAGGATTTTAGGGT
Found at i:11157806 original size:96 final size:95
Alignment explanation
Indices: 11157601--11157841 Score: 254
Period size: 104 Copynumber: 2.4 Consensus size: 95
11157591 GTTTTTAAAT
* * *
11157601 TTTAAGGTTTTAAGAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTATTAAATTAATTA
1 TTTAGGGTTTTAAGAAAAAATCAAATAAATTAGGGTTTAGTG--TGTTAATTAGTAAATTAATTA
* *
11157666 CTAATTTTAAAAAATTAGATTATGGTTTAGTG
64 CTAATTTAAAAAAATTAGATTATGGTTTAGGG
* *
11157698 TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAG-G-GTTACTTGAGTAAATTAATT
1 TTTA-GGGTTTTAA-GAAAAAATCAAATAAATTAGGGTTTAGTGTGTTAATT-AGTAAATTAATT
11157761 A-TAAATTTAAAAAAATTAGATTAGGATTTTAGGGTTTAGGG
63 ACT-AATTTAAAAAAATTAGATT---A---T--GGTTTAGGG
11157802 TTTTAGGGTATTTAAGAAAAAATCAAATAAATTAGGGTTT
1 -TTTAGGGT-TTTAAGAAAAAATCAAATAAATTAGGGTTT
11157842 GGGGTTTAGG
Statistics
Matches: 122, Mismatches: 8, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
95 7 0.06
96 30 0.25
97 4 0.03
98 8 0.07
99 27 0.22
102 1 0.01
104 36 0.30
105 9 0.07
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (95 bp):
TTTAGGGTTTTAAGAAAAAATCAAATAAATTAGGGTTTAGTGTGTTAATTAGTAAATTAATTACT
AATTTAAAAAAATTAGATTATGGTTTAGGG
Found at i:11158112 original size:126 final size:126
Alignment explanation
Indices: 11157884--11158304 Score: 621
Period size: 126 Copynumber: 3.3 Consensus size: 126
11157874 TAATCTAAAA
* *
11157884 AAGCTTCTACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* * * *
11157949 ATGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTATTGAAAG
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
** * * *
11158010 AAGCTTCCATATGGACGCTCTTTTGCTACAGTAATCTCTAAAAAAATAATTTTGAGAAGATGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* *
11158075 CTGCGCAAATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAG
66 CTGCGCAAATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
* *
11158136 AAGC-TCTCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTG
1 AAGCTTC-CACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTG
**
11158200 TCTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
65 TCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
* * * *
11158262 AAGCTCCCACGTGGACGCTTTTTTGCTACAGTGGTTTCTGAAA
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
11158305 TAACTTGGGC
Statistics
Matches: 263, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
125 4 0.02
126 256 0.97
127 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (126 bp):
AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
Found at i:11161530 original size:116 final size:116
Alignment explanation
Indices: 11161318--11162046 Score: 1239
Period size: 116 Copynumber: 6.3 Consensus size: 116
11161308 TTATATATTT
* * *
11161318 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTT-TATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
11161382 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * * *
11161433 ATCACATGAAATAATATAAAAACATTCAAAATATTTCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
**
11161498 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAATATTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
11161549 ATTACATGAAATAATATAAAAA-ATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
11161613 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
11161664 ATTACATGAAATAATATAAAAAAATTCAAAATGTTGCCTTATTTAAAATACTTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
11161729 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
11161780 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTTTTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
11161845 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAA-AGACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACA-ACCTTTTATCTA
*
11161896 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTTTTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
11161961 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
11162012 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
11162047 TGTACAAATA
Statistics
Matches: 582, Mismatches: 28, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
115 162 0.28
116 419 0.72
117 1 0.00
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:11162457 original size:18 final size:18
Alignment explanation
Indices: 11162431--11162473 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
11162421 GACTAGACAA
*
11162431 AGGAAACATATAAA-GGCT
1 AGGATACATA-AAAGGGCT
11162449 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
11162467 AGGATAC
1 AGGATAC
11162474 GTACCTGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:11162574 original size:30 final size:30
Alignment explanation
Indices: 11162529--11162585 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
11162519 TAAACTGTTG
11162529 GGCCCGGTGACTGTGTAGGTC-CTGTTGCTA
1 GGCCCGGTGACTGTGTAGG-CACTGTTGCTA
* *
11162559 GGCCGGGTGATTGTGTAGGCACTGTTG
1 GGCCCGGTGACTGTGTAGGCACTGTTG
11162586 ATGGGTCTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.11, C:0.19, G:0.40, T:0.30
Consensus pattern (30 bp):
GGCCCGGTGACTGTGTAGGCACTGTTGCTA
Found at i:11163100 original size:7 final size:7
Alignment explanation
Indices: 11163090--11163116 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
11163080 GTTAAATAAA
11163090 AAATACT
1 AAATACT
11163097 AAATACT
1 AAATACT
11163104 AAATACT
1 AAATACT
11163111 AAATAC
1 AAATAC
11163117 GAACCACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:11163101 original size:14 final size:14
Alignment explanation
Indices: 11163082--11163115 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
11163072 AAATATTAGT
11163082 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
11163096 TAAATACTAAATAC
1 TAAATAAAAAATAC
11163110 TAAATA
1 TAAATA
11163116 CGAACCACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:11164237 original size:15 final size:15
Alignment explanation
Indices: 11164217--11164247 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11164207 TTTTTATTTT
*
11164217 AAAAAATAAATTTAG
1 AAAAAATAAAGTTAG
11164232 AAAAAATAAAGTTAG
1 AAAAAATAAAGTTAG
11164247 A
1 A
11164248 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAGTTAG
Found at i:11164293 original size:22 final size:22
Alignment explanation
Indices: 11164263--11164306 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
11164253 TTTGAAAAAA
**
11164263 TTAACGAGAGTTTTGAGAAGAAT
1 TTAACGAGAAATTTGAG-AGAAT
11164286 TTAA-GAGAAATTTGAGAGAAT
1 TTAACGAGAAATTTGAGAGAAT
11164307 ATTGAAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30
Consensus pattern (22 bp):
TTAACGAGAAATTTGAGAGAAT
Found at i:11169334 original size:28 final size:27
Alignment explanation
Indices: 11169282--11169334 Score: 63
Period size: 26 Copynumber: 1.9 Consensus size: 27
11169272 TTTTGAATAG
* *
11169282 TTTTGAATAAAATTAGAATATTTTAAA
1 TTTTGAATAAAATAAGAATAATTTAAA
11169309 TTTT-AATAAAATGAAGAAATAATTTA
1 TTTTGAATAAAAT-AAG-AATAATTTA
11169335 TTTCAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 8 0.36
27 6 0.27
28 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (27 bp):
TTTTGAATAAAATAAGAATAATTTAAA
Found at i:11169485 original size:6 final size:6
Alignment explanation
Indices: 11169474--11169504 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
11169464 CCATAATGAT
11169474 TAATTA TAATTA TAATTA TAATTA TAATTA T
1 TAATTA TAATTA TAATTA TAATTA TAATTA T
11169505 TTAGATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATTA
Found at i:11171436 original size:14 final size:14
Alignment explanation
Indices: 11171417--11171446 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
11171407 GTTTTATCCT
11171417 TTTTTTTCTTTTTC
1 TTTTTTTCTTTTTC
11171431 TTTTTTTCTTTTTC
1 TTTTTTTCTTTTTC
11171445 TT
1 TT
11171447 GTGAAGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTTTCTTTTTC
Found at i:11175693 original size:41 final size:41
Alignment explanation
Indices: 11175634--11175785 Score: 119
Period size: 41 Copynumber: 3.5 Consensus size: 41
11175624 CTATCGCTTC
11175634 ACTGCAACTTCA-AGGAGATAGGGTTTGTTTTGATCTGCTCT
1 ACTGCAACTTCAGA-GAGATAGGGTTTGTTTTGATCTGCTCT
* * *
11175675 ACTGCAACTTCAGAGAGAT-GAGATCTGTGATTTATAGCTTCAATCTGTTCC
1 ACTGCAACTTCAGAGAGATAG-GGT-T-TG-TTT-T-G-----ATCTGCTCT
* * * *
11175726 ACTACAACTTCAGGGAAATAAGGTTTGTTTTGATCTGCTCT
1 ACTGCAACTTCAGAGAGATAGGGTTTGTTTTGATCTGCTCT
11175767 ACTGCAACTTCAGAGAGAT
1 ACTGCAACTTCAGAGAGAT
11175786 GAGATCTGTG
Statistics
Matches: 85, Mismatches: 13, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
40 1 0.01
41 42 0.49
42 2 0.02
43 2 0.02
44 3 0.04
45 1 0.01
46 2 0.02
47 1 0.01
48 3 0.04
49 2 0.02
50 1 0.01
51 25 0.29
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (41 bp):
ACTGCAACTTCAGAGAGATAGGGTTTGTTTTGATCTGCTCT
Found at i:11175734 original size:51 final size:49
Alignment explanation
Indices: 11175666--11175922 Score: 170
Period size: 51 Copynumber: 5.4 Consensus size: 49
11175656 GTTTGTTTTG
* *
11175666 ATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCA
1 ATCTGTTCCACTGCAACTTCAGAGAGATGAGATCTGTG-TTTATAGCTT-A
* * * * *
11175717 ATCTGTTCCACTACAACTTCAGGGAAATAAGGT-T-TGTTT-T-G----
1 ATCTGTTCCACTGCAACTTCAGAGAGATGAGATCTGTGTTTATAGCTTA
* *
11175758 ATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTTA
1 ATCTGTTCCACTGCAACTTCAGAGAGATGAGATCTGT-GTTTATAGC-TTA
* * * * *
11175809 ATCTATTCCATTGCAACTTTA-AGGAAATAAGAT-T-TGTTT-T-G----
1 ATCTGTTCCACTGCAACTTCAGA-GAGATGAGATCTGTGTTTATAGCTTA
* * * *
11175850 ATTTGCTCTACTGCAACTTCAGATAGATGAGATCTGTGGTTTATAGCTTCA
1 ATCTGTTCCACTGCAACTTCAGAGAGATGAGATCTGT-GTTTATAGCTT-A
11175901 ATCTGTTCCACTGCAACTTCAG
1 ATCTGTTCCACTGCAACTTCAG
11175923 GAAAATAAGA
Statistics
Matches: 151, Mismatches: 33, Indels: 44
0.66 0.14 0.19
Matches are distributed among these distances:
41 48 0.32
42 3 0.02
43 2 0.01
44 8 0.05
45 2 0.01
46 4 0.03
47 2 0.01
48 7 0.05
49 3 0.02
50 3 0.02
51 69 0.46
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (49 bp):
ATCTGTTCCACTGCAACTTCAGAGAGATGAGATCTGTGTTTATAGCTTA
Found at i:11175795 original size:92 final size:92
Alignment explanation
Indices: 11175633--11175936 Score: 475
Period size: 92 Copynumber: 3.3 Consensus size: 92
11175623 TCTATCGCTT
* * *
11175633 CACTGCAACTTCAAGGAGATAGGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
1 CACTGCAACTTCAAGGAAATAAGATTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
*
11175698 TCTGTGATTTATAGCTTCAATCTGTTC
66 TCTGTGGTTTATAGCTTCAATCTGTTC
* * *
11175725 CACTACAACTTCAGGGAAATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
1 CACTGCAACTTCAAGGAAATAAGATTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
* *
11175790 TCTGTGGTTTATAGCTTTAATCTATTC
66 TCTGTGGTTTATAGCTTCAATCTGTTC
* * * *
11175817 CATTGCAACTTTAAGGAAATAAGATTTGTTTTGATTTGCTCTACTGCAACTTCAGATAGATGAGA
1 CACTGCAACTTCAAGGAAATAAGATTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
11175882 TCTGTGGTTTATAGCTTCAATCTGTTC
66 TCTGTGGTTTATAGCTTCAATCTGTTC
11175909 CACTGCAACTTC-AGGAAAATAAGATTTG
1 CACTGCAACTTCAAGG-AAATAAGATTTG
11175937 CTATCTTTAG
Statistics
Matches: 193, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
91 3 0.02
92 190 0.98
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (92 bp):
CACTGCAACTTCAAGGAAATAAGATTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATGAGA
TCTGTGGTTTATAGCTTCAATCTGTTC
Found at i:11176124 original size:68 final size:68
Alignment explanation
Indices: 11175996--11176124 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
11175986 TTCAATCTAC
* * * *
11175996 TCCGCTGAAACTTCAAAGAGATCTGCTATGACTTCGAGCCGCTCCAATACCTTTTTAGGGAAAAG
1 TCCGCTAAAACTTCAAAGAGATCTGCTATGACTTCGAGCCGCTCCAACACCATTTCAGGGAAAAG
11176061 AGA
66 AGA
* * * * * * *
11176064 TCCGCTAAAACTTCAAGGATATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGA
1 TCCGCTAAAACTTCAAAGAGATCTGCTATGACTTCGAGCCGCTCCAACACCATTTCAGGGA
11176125 GAAGTGATTT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
68 50 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (68 bp):
TCCGCTAAAACTTCAAAGAGATCTGCTATGACTTCGAGCCGCTCCAACACCATTTCAGGGAAAAG
AGA
Found at i:11188026 original size:132 final size:132
Alignment explanation
Indices: 11187760--11188016 Score: 345
Period size: 132 Copynumber: 1.9 Consensus size: 132
11187750 TTGCCTCGCC
* * * * * *
11187760 TTAGAAAACACTAATGAAATTCCGAAGGGATATTCGATTATTTTGAATAAATAGGAGATTGCAAC
1 TTAGAAAACACGAATGAAATTCCAAAGAGATATTCGATTATTTTGAACAAAGAGGAAATTGCAAC
* * * * *
11187825 CCAGCACGATAGGGCACTATTCCCCAAATTGCTAAACATCGAACATTTCCTTCATTTTAAAAAGT
66 CCAACACGATAGGGCACGATTCCCCAAATTACCAAACATCGAACATTACCTTCATTTTAAAAAGT
11187890 TT
131 TT
* *
11187892 TTAGAAAACACGAATGAAATTCTAAAGAGATATTCGATTATTTTGAGCAAACGA-GAAATTGCAA
1 TTAGAAAACACGAATGAAATTCCAAAGAGATATTCGATTATTTTGAACAAA-GAGGAAATTGCAA
* * * *
11187956 CCCAACACGGTAGGGCACGATTCCCCGAATTACCAAACATCGAATATTACCTTCGTTTTAA
65 CCCAACACGATAGGGCACGATTCCCCAAATTACCAAACATCGAACATTACCTTCATTTTAA
11188017 GGAATTTTTA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
132 106 0.99
133 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (132 bp):
TTAGAAAACACGAATGAAATTCCAAAGAGATATTCGATTATTTTGAACAAAGAGGAAATTGCAAC
CCAACACGATAGGGCACGATTCCCCAAATTACCAAACATCGAACATTACCTTCATTTTAAAAAGT
TT
Done.