Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 52 of 378
Found at i:12979820 original size:17 final size:17
Alignment explanation
Indices: 12979798--12979841 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
12979788 CCTAGACCTC
*
12979798 AAAAATAAAATAAGAAT
1 AAAAATAAAATAAAAAT
12979815 AAAAATAAAATAAAAAT
1 AAAAATAAAATAAAAAT
12979832 AAAAATAAAA
1 AAAAATAAAA
12979842 ATTACTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAAATAAAATAAAAAT
Found at i:12985892 original size:29 final size:29
Alignment explanation
Indices: 12985860--12985918 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
12985850 AGTGCCCATG
12985860 TACATAGGCTTACGTGAAGTATTGATCAT
1 TACATAGGCTTACGTGAAGTATTGATCAT
12985889 TACATAGGCTTACGTGAAGTATTGATCAT
1 TACATAGGCTTACGTGAAGTATTGATCAT
12985918 T
1 T
12985919 CTCATTTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.36
Consensus pattern (29 bp):
TACATAGGCTTACGTGAAGTATTGATCAT
Found at i:12987764 original size:7 final size:7
Alignment explanation
Indices: 12987752--12987777 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12987742 TTTGAGAGTT
12987752 AAATTCC
1 AAATTCC
12987759 AAATTCC
1 AAATTCC
12987766 AAATTCC
1 AAATTCC
12987773 AAATT
1 AAATT
12987778 TTAAAGTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (7 bp):
AAATTCC
Found at i:12991535 original size:7 final size:7
Alignment explanation
Indices: 12991523--12991556 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
12991513 ATCGCAAAGT
12991523 AATAAAA
1 AATAAAA
12991530 AATAAAAA
1 AAT-AAAA
12991538 AATAAAAA
1 AAT-AAAA
12991546 AATAAAA
1 AATAAAA
12991553 AATA
1 AATA
12991557 TAGATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:12991539 original size:8 final size:8
Alignment explanation
Indices: 12991526--12991554 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12991516 GCAAAGTAAT
12991526 AAAAAATA
1 AAAAAATA
12991534 AAAAAATA
1 AAAAAATA
12991542 AAAAAATA
1 AAAAAATA
12991550 AAAAA
1 AAAAA
12991555 TATAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:12992848 original size:43 final size:43
Alignment explanation
Indices: 12992799--12992885 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
12992789 TAAATCGTAT
12992799 TACTTAACAAAATTTCTTACTTGACTTATTTACAATAATTAGA
1 TACTTAACAAAATTTCTTACTTGACTTATTTACAATAATTAGA
*
12992842 TACTTAACAAAATTTCTTACTTGACTTATTTACAATACTTAGA
1 TACTTAACAAAATTTCTTACTTGACTTATTTACAATAATTAGA
12992885 T
1 T
12992886 CACACCAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.43
Consensus pattern (43 bp):
TACTTAACAAAATTTCTTACTTGACTTATTTACAATAATTAGA
Found at i:12996570 original size:39 final size:39
Alignment explanation
Indices: 12996522--12996604 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
12996512 CGTTTTAAAG
* * *
12996522 AAAAACGCCACTAAAGATCGAGTATTAGCAGTGTTTTTA
1 AAAAACGCCACTAAAGATCGAGAATTAGCAGTGCTTTCA
*
12996561 AAAAACGCCACTAAAGATCGAGAATTAGCTGTGCTTTCA
1 AAAAACGCCACTAAAGATCGAGAATTAGCAGTGCTTTCA
12996600 AAAAA
1 AAAAA
12996605 AAACCGCTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (39 bp):
AAAAACGCCACTAAAGATCGAGAATTAGCAGTGCTTTCA
Found at i:12996900 original size:17 final size:17
Alignment explanation
Indices: 12996878--12996914 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
12996868 CCTTTAGCGG
12996878 CGCTTTTTAATAAACGC
1 CGCTTTTTAATAAACGC
12996895 CGCTTTTTAATAAACGC
1 CGCTTTTTAATAAACGC
12996912 CGC
1 CGC
12996915 AAAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (17 bp):
CGCTTTTTAATAAACGC
Found at i:12997339 original size:21 final size:21
Alignment explanation
Indices: 12997313--12997353 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
12997303 TTATCATTAT
*
12997313 AGTTTAAGGTTTACGGTTTAG
1 AGTTTAAGGTTAACGGTTTAG
* *
12997334 AGTTTATGGTTAAGGGTTTA
1 AGTTTAAGGTTAACGGTTTA
12997354 AGGTTTATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.44
Consensus pattern (21 bp):
AGTTTAAGGTTAACGGTTTAG
Found at i:12997359 original size:21 final size:22
Alignment explanation
Indices: 12997327--12997367 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
12997317 TAAGGTTTAC
12997327 GGTTTAGAGTTTATG-GTTAAG
1 GGTTTAGAGTTTATGAGTTAAG
12997348 GGTTTA-AGGTTTATGAGTTA
1 GGTTTAGA-GTTTATGAGTTA
12997368 TTATTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 13 0.72
22 4 0.22
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (22 bp):
GGTTTAGAGTTTATGAGTTAAG
Found at i:12997433 original size:21 final size:22
Alignment explanation
Indices: 12997407--12997455 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
12997397 CAGGGATTAT
12997407 GGTTTAAGGGTT-GGGGTGTAA
1 GGTTTAAGGGTTAGGGGTGTAA
* * *
12997428 GGTTTAAGTGTTAGGGGTTTAG
1 GGTTTAAGGGTTAGGGGTGTAA
12997450 GGTTTA
1 GGTTTA
12997456 TGTTTTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGGTGTAA
Found at i:12997509 original size:14 final size:14
Alignment explanation
Indices: 12997474--12997510 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
12997464 GATTCAAGGT
*
12997474 TTAGGGATTATGGA
1 TTAGGGGTTATGGA
12997488 TTAGGGGTTATGGA
1 TTAGGGGTTATGGA
*
12997502 TTATGGGTT
1 TTAGGGGTT
12997511 TAGGGTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
TTAGGGGTTATGGA
Found at i:12997773 original size:7 final size:7
Alignment explanation
Indices: 12997755--12997813 Score: 64
Period size: 7 Copynumber: 8.3 Consensus size: 7
12997745 TACGAGTTAT
*
12997755 GGTTCAG
1 GGTTTAG
12997762 GGTTTAG
1 GGTTTAG
*
12997769 GGTTTAA
1 GGTTTAG
*
12997776 GGTTTAT
1 GGTTTAG
*
12997783 AGTTTAG
1 GGTTTAG
*
12997790 GGTTCTAT
1 GGTT-TAG
12997798 GGTTTAG
1 GGTTTAG
12997805 GGTTTAG
1 GGTTTAG
12997812 GG
1 GG
12997814 ATTAAAGGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:12997804 original size:15 final size:14
Alignment explanation
Indices: 12997751--12997810 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
12997741 GAGTTACGAG
*
12997751 TTATGGTTCAGGGT
1 TTATGGTTTAGGGT
* *
12997765 TTAGGGTTTAAGGT
1 TTATGGTTTAGGGT
*
12997779 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
12997793 TCTATGGTTTAGGGT
1 T-TATGGTTTAGGGT
12997808 TTA
1 TTA
12997811 GGGATTAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:12997885 original size:313 final size:305
Alignment explanation
Indices: 12997226--12997907 Score: 777
Period size: 313 Copynumber: 2.2 Consensus size: 305
12997216 ATGACTGATT
* * * *
12997226 ATTTTTTAATTTATATGTTAAATATTTTCTTATATAATTGTAAAAGAGATTGTATTAATTTCAAA
1 ATTTTTTAATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAA
* * *
12997291 ATATTGAATTAATTATCATTATAGTTTAAGGTTTACGGTTTAGAGTTTATGGTTAAGGGTTTAAG
66 ATATTGAAGTAATTATCATTATAGTTTAAGGTTTACGGTTTAGAGTATATAGTTAAGGGTTTAAG
* * * *
12997356 GTTTATGAGTTATTATTTTAAGGTTTAGAGATTATAGGGTTCAGGGATTATGGTTTAAGGGTTGG
131 GTTTATGAGTTACTACTTTAAGGTTTAGAGATTATAGGGTTCAGGGACTAGGGTTTAAGGGTTGG
* * * * *
12997421 GGTGTAAGGTTTAAGTGTTAGGGGTTTAGGGTTTATGTTTTATGATTCAAGGTTTAGGGATTATG
196 GGTGTAAGGTTTAAGAGTTAGGGGTTCAGGGTTTAGGGTTTAAGATTCAAGGTTTAGGGATTATG
* ** * * * *
12997486 GATTAGGGGTTATGGATTATGGGTTTAGGGTTTAAATTAATTAGC
261 GATTAGGGGTTAGGGATTAAAGGATTAAGGTATAAATAAATTAGC
*
12997531 ATTTTTTAATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAGTGTTAATTTTAAA
1 ATTTTTTAATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAA
* * *
12997596 ATATTGAAGTAATTATCTTTATAGTTTAGGGTTTATGGTTTACAGATTAATGTATATAGTTAAGA
66 ATATTGAAGTAATTATCATTATAGTTTAAGGTTTACGGTTT--AG----A-GTATATAGTTAAG-
* * * *
12997661 GTTTTAGGGTTTATGAGTTACTACTTTAATGGTTTATGA-ATTAT-GGTTTCAGGG-CTGGGGTT
123 GGTTTAAGGTTTATGAGTTACTACTTTAA-GGTTTA-GAGATTATAGGGTTCAGGGACTAGGGTT
* * * * *
12997723 TAAGGTTTATGGGGT-TAAGAG-TTACGAGTTA-TGGTTCAGGGTTTAGGGTTTAAGGTTTATA-
186 TAAGG-GT-TGGGGTGTAAG-GTTTAAGAGTTAGGGGTTCAGGGTTTAGGGTTTAAGATTCA-AG
* * * * *
12997784 GTTTAGGGTTCTATGGTTTAGGGTTTAGGGATTAAAGGATTAAGG-ATAGATAAATTAGT
247 GTTTAGGGAT-TATGGATTAGGGGTTAGGGATTAAAGGATTAAGGTATAAATAAATTAGC
* *
12997843 ATTTTTTTAATTTATATATTAAATAATTTCATATATAATTGTAAAAGAGATAATATTAATTTTAA
1 A-TTTTTTAATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAA
12997908 TATCTTAAAA
Statistics
Matches: 317, Mismatches: 44, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
305 97 0.31
307 2 0.01
311 1 0.00
312 62 0.20
313 135 0.43
314 18 0.06
315 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (305 bp):
ATTTTTTAATTTATATATTAAATAATTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAA
ATATTGAAGTAATTATCATTATAGTTTAAGGTTTACGGTTTAGAGTATATAGTTAAGGGTTTAAG
GTTTATGAGTTACTACTTTAAGGTTTAGAGATTATAGGGTTCAGGGACTAGGGTTTAAGGGTTGG
GGTGTAAGGTTTAAGAGTTAGGGGTTCAGGGTTTAGGGTTTAAGATTCAAGGTTTAGGGATTATG
GATTAGGGGTTAGGGATTAAAGGATTAAGGTATAAATAAATTAGC
Found at i:12997973 original size:13 final size:14
Alignment explanation
Indices: 12997949--12997985 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
12997939 GAAAAAAATG
12997949 AAATTATTTAGATT
1 AAATTATTTAGATT
12997963 AAATT-TTTAGATT
1 AAATTATTTAGATT
*
12997976 AAACTATTTA
1 AAATTATTTA
12997986 AGAGATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (14 bp):
AAATTATTTAGATT
Found at i:12998064 original size:19 final size:19
Alignment explanation
Indices: 12998042--12998081 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
12998032 AATTGATAAC
*
12998042 AAATAAAAATTAAATACAA
1 AAATAAAAATGAAATACAA
*
12998061 AAATAAAAATGAAATATAA
1 AAATAAAAATGAAATACAA
12998080 AA
1 AA
12998082 TGGAGATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (19 bp):
AAATAAAAATGAAATACAA
Found at i:12998366 original size:19 final size:18
Alignment explanation
Indices: 12998344--12998391 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
12998334 CCCGTAATAG
*
12998344 ATTTTCCCCAATTCACTAT
1 ATTTTCCCCAA-TCACTAA
*
12998363 A-TTTCCCCTAATCTCTAA
1 ATTTTCCCC-AATCACTAA
12998381 ATTTTCCCCAA
1 ATTTTCCCCAA
12998392 ATCCCTAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTTCCCCAATCACTAA
Found at i:12998394 original size:19 final size:19
Alignment explanation
Indices: 12998344--12998399 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
12998334 CCCGTAATAG
* *
12998344 ATTTTCCCCAATTCACTAT
1 ATTTTCCCCAAATCACTAA
* *
12998363 A-TTTCCCCTAATCTCTAA
1 ATTTTCCCCAAATCACTAA
*
12998381 ATTTTCCCCAAATCCCTAA
1 ATTTTCCCCAAATCACTAA
12998400 GCATCCGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTTCCCCAAATCACTAA
Found at i:12998535 original size:20 final size:20
Alignment explanation
Indices: 12998510--12998548 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12998500 ATGAAGGTTC
*
12998510 AGTTTTCTTGTTATGTCATT
1 AGTTTTCTTGTTATATCATT
12998530 AGTTTTCTTGTTATATCAT
1 AGTTTTCTTGTTATATCAT
12998549 CCAACCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.10, G:0.13, T:0.59
Consensus pattern (20 bp):
AGTTTTCTTGTTATATCATT
Found at i:13000772 original size:23 final size:24
Alignment explanation
Indices: 13000727--13000772 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
13000717 ATTATTGTTG
*
13000727 AAATATTCTCATCCGTTTTATCAC
1 AAATATTATCATCCGTTTTATCAC
*
13000751 AAATATTATCATTC-TTTTATCA
1 AAATATTATCATCCGTTTTATCA
13000773 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.46
Consensus pattern (24 bp):
AAATATTATCATCCGTTTTATCAC
Found at i:13001075 original size:48 final size:48
Alignment explanation
Indices: 13001023--13001185 Score: 118
Period size: 48 Copynumber: 3.2 Consensus size: 48
13001013 TTTTGTCTAC
13001023 TTTTATTTTATTTTTAAATTACCTAATCAAATTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATCAAATTAAATTGTATTTAAAG
* ** ** *
13001071 TTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACGAA--AAATAT-T-TTGTCTAC
1 TTTTATTTT--AT-TTTTA----A-ATTA-CCTAATCA--AATTAAAT-TGTATT-TAAAG
*
13001128 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATCAAATTAAATTGTATTTAAAG
13001176 TTTTATTTTA
1 TTTTATTTTA
13001186 AATATTTTAT
Statistics
Matches: 85, Mismatches: 13, Indels: 34
0.64 0.10 0.26
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
48 31 0.36
49 5 0.06
50 3 0.04
51 5 0.06
54 5 0.06
55 3 0.04
56 5 0.06
57 22 0.26
58 1 0.01
59 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (48 bp):
TTTTATTTTATTTTTAAATTACCTAATCAAATTAAATTGTATTTAAAG
Found at i:13001103 original size:105 final size:105
Alignment explanation
Indices: 13000913--13001381 Score: 803
Period size: 105 Copynumber: 4.4 Consensus size: 105
13000903 ATTTTAAATG
* **
13000913 TTTTATTTTATTTTTAAATTACTTAATTAAATTAAATCATATTTAAAGTTTTATTTTAAATATAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT--A-A-A-
* *
13000978 TATTTTATTTTATTTTATTTTAATTATGAAAAATATTTTGTCTAC
61 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
13001023 TTTTATTTTATTTTTAAATTACCTAATCAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
13001088 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
13001128 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
13001193 TATTTTATTTTATTTTAATCATGAAAAATATTTTGTCTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
* *
13001233 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATAGTATTTAAAGTTTTATTTTAAATGTTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
13001298 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
13001338 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
13001382 TTAAATATTG
Statistics
Matches: 346, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
105 290 0.84
106 1 0.00
107 1 0.00
108 1 0.00
110 53 0.15
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
Found at i:13001299 original size:14 final size:13
Alignment explanation
Indices: 13001274--13001315 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
13001264 TTAAATAGTA
13001274 TTTAAAGTTTTAT
1 TTTAAAGTTTTAT
13001287 TTTAAATGTTTTAT
1 TTTAAA-GTTTTAT
13001301 TTT--A-TTTTAT
1 TTTAAAGTTTTAT
13001311 TTTAA
1 TTTAA
13001316 TCACGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.35
12 1 0.04
13 6 0.23
14 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (13 bp):
TTTAAAGTTTTAT
Found at i:13001618 original size:9 final size:9
Alignment explanation
Indices: 13001603--13001693 Score: 102
Period size: 9 Copynumber: 10.4 Consensus size: 9
13001593 TATATCGTAT
13001603 CTTACATAA
1 CTTACATAA
*
13001612 TTTACATAA
1 CTTACATAA
*
13001621 -TTCAGATAA
1 CTT-ACATAA
13001630 CTTACATAA
1 CTTACATAA
*
13001639 TTTACATAA
1 CTTACATAA
13001648 CTTACATAA
1 CTTACATAA
13001657 --TACATAA
1 CTTACATAA
13001664 CTTACATAA
1 CTTACATAA
13001673 --TATCATAA
1 CTTA-CATAA
13001681 CTTACATAA
1 CTTACATAA
13001690 CTTA
1 CTTA
13001694 ATTATACTTA
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
7 9 0.13
8 7 0.10
9 50 0.71
10 4 0.06
ACGTcount: A:0.45, C:0.18, G:0.01, T:0.36
Consensus pattern (9 bp):
CTTACATAA
Found at i:13001717 original size:51 final size:51
Alignment explanation
Indices: 13001613--13001719 Score: 121
Period size: 51 Copynumber: 2.1 Consensus size: 51
13001603 CTTACATAAT
* * *
13001613 TTACATAATTCAGATAACTTACATAATTTACATAACTTACATAATACATAAC
1 TTACATAATTCA-ATAACTTACATAACTTACATAACTTACATAATAAACAAC
*
13001665 TTACATAATATC-ATAACTTACATAACTTA-ATTATACTTATA-AATAAACAAC
1 TTACATAAT-TCAATAACTTACATAACTTACA-TA-ACTTACATAATAAACAAC
13001716 TTAC
1 TTAC
13001720 CCGTGTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
50 1 0.02
51 30 0.62
52 15 0.31
53 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.36
Consensus pattern (51 bp):
TTACATAATTCAATAACTTACATAACTTACATAACTTACATAATAAACAAC
Found at i:13006718 original size:13 final size:14
Alignment explanation
Indices: 13006702--13006730 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13006692 TTATAAATAT
13006702 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
13006715 TTATAATGGTTTAA
1 TTATAATGGTTTAA
13006729 TT
1 TT
13006731 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:13007186 original size:15 final size:15
Alignment explanation
Indices: 13007138--13007187 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
13007128 AACTTAGAGC
*
13007138 GGAGGCAGCAGAGAG
1 GGAGGCAGCAGCGAG
*
13007153 GGAGGCAGCGGC-A-
1 GGAGGCAGCAGCGAG
*
13007166 -GCGGCAGCAGCGAG
1 GGAGGCAGCAGCGAG
13007180 GGAGGCAG
1 GGAGGCAG
13007188 AGCAGAGTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
12 9 0.33
13 1 0.04
14 1 0.04
15 16 0.59
ACGTcount: A:0.26, C:0.20, G:0.54, T:0.00
Consensus pattern (15 bp):
GGAGGCAGCAGCGAG
Found at i:13007683 original size:43 final size:43
Alignment explanation
Indices: 13007503--13007685 Score: 224
Period size: 43 Copynumber: 4.3 Consensus size: 43
13007493 GCAGGAAGGG
* * * *
13007503 CTTTTAGCCAGCGCTTTTACAACAAATGCCGCTAAAA-CCATGA
1 CTTTTAG-CGGCGCTTTTCCTACAAACGCCGCTAAAAGCCATGA
* * * *
13007546 CTTTTAGTGGTGCTTTTCTTACAAACGCCCCTAAAAGCCATGA
1 CTTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAAGCCATGA
* * * *
13007589 CTTTTAGAGGCGCTTTTCCTATAAACGCTGCAAAAAGCCATGA
1 CTTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAAGCCATGA
* *
13007632 CTTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAGCCATGA
1 CTTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAAGCCATGA
13007675 CTTTTAGCGGC
1 CTTTTAGCGGC
13007686 ATTTTTTTAG
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 21 0.18
43 97 0.82
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAAGCCATGA
Found at i:13008045 original size:20 final size:21
Alignment explanation
Indices: 13008017--13008057 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
13008007 CAACTCTTAA
*
13008017 ATTATTATTTAATTA-AAATT
1 ATTAATATTTAATTATAAATT
*
13008037 ATTAATATTTATTTATAAATT
1 ATTAATATTTAATTATAAATT
13008058 TTCTGTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTAATATTTAATTATAAATT
Found at i:13014665 original size:78 final size:74
Alignment explanation
Indices: 13014583--13014726 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 74
13014573 GTAACCAAAA
* * * *
13014583 TTTGAGAATATTATTTAATTGTATTCTAAAAATAATAATATATAATAAATTCAAGAAAAAACTAA
1 TTTGAAAATATTAGTCAATTGTATTCT--AAA-AATAATATATAATAAATTAAAG-AAAAACTAA
13014648 AAAAAATCCGATT
62 AAAAAATCCGATT
*
13014661 TTTGAAAATGTTAGTCAATTGTATTCTAAAAATAATATATAATAAATTAAAGAAAAACTAAAAAA
1 TTTGAAAATATTAGTCAATTGTATTCTAAAAATAATATATAATAAATTAAAGAAAAACTAAAAAA
13014726 A
66 A
13014727 CCCAACTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
74 14 0.23
75 21 0.34
76 3 0.05
78 23 0.38
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (74 bp):
TTTGAAAATATTAGTCAATTGTATTCTAAAAATAATATATAATAAATTAAAGAAAAACTAAAAAA
AATCCGATT
Found at i:13014744 original size:75 final size:77
Alignment explanation
Indices: 13014599--13014744 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 77
13014589 AATATTATTT
* * * * *
13014599 AATTGTATTCTAAAAATAATAATATATAATAAATTCAAGAAAAAACTAAAAAAAATCCGATTTTT
1 AATTGTATTCT-AAAATAATAATATATAATAAATTAAAGAAAAAACTAAAAAAAACCCAATTCTA
*
13014664 GAAAATGTTAGTC
65 AAAAATGTTAGTC
13014677 AATTGTATTCT-AAA-AATAATATATAATAAATTAAAG-AAAAACT-AAAAAAACCCAACTTCCT
1 AATTGTATTCTAAAATAATAATATATAATAAATTAAAGAAAAAACTAAAAAAAACCCAA-TT-CT
13014738 AAAAAAT
64 AAAAAAT
13014745 TACAATAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
73 10 0.17
74 9 0.15
75 27 0.45
76 3 0.05
78 11 0.18
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.29
Consensus pattern (77 bp):
AATTGTATTCTAAAATAATAATATATAATAAATTAAAGAAAAAACTAAAAAAAACCCAATTCTAA
AAAATGTTAGTC
Found at i:13018027 original size:26 final size:26
Alignment explanation
Indices: 13017994--13018047 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
13017984 TTTTAATACT
* *
13017994 TTAAAATGCTATATGAT-TTTTGTTG
1 TTAAAATGATATATGATATTTTGGTG
*
13018019 TTAAGAATGATATTTGATATTTTGGTG
1 TTAA-AATGATATATGATATTTTGGTG
13018046 TT
1 TT
13018048 TAAACAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 11 0.46
27 9 0.38
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.52
Consensus pattern (26 bp):
TTAAAATGATATATGATATTTTGGTG
Found at i:13024171 original size:2 final size:2
Alignment explanation
Indices: 13024159--13024189 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13024149 TCGCTTCGCT
*
13024159 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13024190 TATGGCACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:13025695 original size:7 final size:7
Alignment explanation
Indices: 13025676--13025737 Score: 115
Period size: 7 Copynumber: 8.7 Consensus size: 7
13025666 ACTAAACACC
13025676 ATTAAAA
1 ATTAAAA
13025683 ATTTAAAA
1 A-TTAAAA
13025691 ATTAAAA
1 ATTAAAA
13025698 ATTAAAA
1 ATTAAAA
13025705 ATTAAAA
1 ATTAAAA
13025712 ATTAAAA
1 ATTAAAA
13025719 ATTAAAA
1 ATTAAAA
13025726 ATTAAAA
1 ATTAAAA
13025733 ATTAA
1 ATTAA
13025738 CATCTTAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 47 0.87
8 7 0.13
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATTAAAA
Found at i:13027105 original size:7 final size:7
Alignment explanation
Indices: 13027093--13027122 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
13027083 GCATAAAACC
13027093 ATGAATG
1 ATGAATG
13027100 ATGAATG
1 ATGAATG
13027107 ATGAATG
1 ATGAATG
13027114 ATGAATG
1 ATGAATG
13027121 AT
1 AT
13027123 AATACATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (7 bp):
ATGAATG
Found at i:13027920 original size:31 final size:29
Alignment explanation
Indices: 13027864--13027922 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
13027854 ATATTTTTAT
* *
13027864 GTGTTGGAAATATATTATTGTAAATAAAA
1 GTGTTGGAAATAAATTAGTGTAAATAAAA
13027893 GTGTTGGAAACTAAATTAAGTGTAAATAAA
1 GTGTTGGAAA-TAAATT-AGTGTAAATAAA
13027923 TAAAGCAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 5 0.19
31 11 0.42
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.34
Consensus pattern (29 bp):
GTGTTGGAAATAAATTAGTGTAAATAAAA
Found at i:13028956 original size:98 final size:97
Alignment explanation
Indices: 13028842--13029027 Score: 282
Period size: 98 Copynumber: 1.9 Consensus size: 97
13028832 CAAGGCTATG
* *
13028842 AAATTATTAAGAGCATTTAATAAGCTCAACCTCTGAGTTTTATAATTCGATGAATTCATCAAGTC
1 AAATTATTAAGAGCATTTAATAAGCTCAACCTCTCAGTTTTATAATTCAATGAATTCATCAAGTC
13028907 TATCTCAATAAAACCACCCAAACACTGGAATT
66 TATCTCAATAAAACCACCCAAACACTGGAATT
* * *
13028939 AAATTCATTAAGAGCATTTAATATGCTCAACCTTTCAGTTTTATAATTCAATGAATTCATTAAGT
1 AAATT-ATTAAGAGCATTTAATAAGCTCAACCTCTCAGTTTTATAATTCAATGAATTCATCAAGT
* * **
13029004 CTGTCTCACTAGGACCACCCAAAC
65 CTATCTCAATAAAACCACCCAAAC
13029028 TCTAGGCTAT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
97 5 0.06
98 74 0.94
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (97 bp):
AAATTATTAAGAGCATTTAATAAGCTCAACCTCTCAGTTTTATAATTCAATGAATTCATCAAGTC
TATCTCAATAAAACCACCCAAACACTGGAATT
Found at i:13030409 original size:8 final size:8
Alignment explanation
Indices: 13030391--13030428 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
13030381 TTTAAGAGAT
13030391 TAATAATTA
1 TAATAA-TA
13030400 TAATAATA
1 TAATAATA
*
13030408 TAATAGT-
1 TAATAATA
13030415 TAATAATA
1 TAATAATA
13030423 TAATAA
1 TAATAA
13030429 AAGAATAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 14 0.54
9 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (8 bp):
TAATAATA
Found at i:13030450 original size:21 final size:20
Alignment explanation
Indices: 13030424--13030466 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
13030414 TTAATAATAT
* *
13030424 AATAAAAGAATAAAGAAATGA
1 AATAAAAAAAAAAAGAAA-GA
13030445 AATAAAAAAAAAAAGAAAGA
1 AATAAAAAAAAAAAGAAAGA
13030465 AA
1 AA
13030467 GAAGGCACGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (20 bp):
AATAAAAAAAAAAAGAAAGA
Found at i:13033134 original size:26 final size:26
Alignment explanation
Indices: 13033060--13033137 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
13033050 ATTCGCTCAT
* * *
13033060 GGTCCTTCGACCAACTCAAACTCAAG
1 GGTCCTCCAACCAACTCAAACTTAAG
13033086 GGTCCTCCAACCAACTCAAACTTAAG
1 GGTCCTCCAACCAACTCAAACTTAAG
* *
13033112 GGTCCTCTAACCCACTCAAACTTAAG
1 GGTCCTCCAACCAACTCAAACTTAAG
13033138 CTTACTAGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.32, C:0.35, G:0.13, T:0.21
Consensus pattern (26 bp):
GGTCCTCCAACCAACTCAAACTTAAG
Found at i:13034219 original size:38 final size:38
Alignment explanation
Indices: 13034140--13034219 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
13034130 TAGTAGAGGA
* * ** *
13034140 TTTTCCTTAACAGAAAATATTCTACAACAGTCAAAGGT
1 TTTTCCTCAACAAAAAATATTCTACAACAGAAAAAGAT
*
13034178 TTTTCCTCAATCAAAAAATATTCTACAACA-AAAAATAT
1 TTTTCCTCAA-CAAAAAATATTCTACAACAGAAAAAGAT
13034216 TTTT
1 TTTT
13034220 AAAAAATATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 17 0.49
39 18 0.51
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.35
Consensus pattern (38 bp):
TTTTCCTCAACAAAAAATATTCTACAACAGAAAAAGAT
Found at i:13039293 original size:49 final size:49
Alignment explanation
Indices: 13039221--13039367 Score: 294
Period size: 49 Copynumber: 3.0 Consensus size: 49
13039211 GTTTTTCATT
13039221 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
13039270 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
13039319 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
13039368 TGTCGATGAA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 98 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (49 bp):
CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
Found at i:13041837 original size:26 final size:26
Alignment explanation
Indices: 13041808--13041860 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13041798 TATATTAAAT
13041808 AATTTTTTATTTAATATTTAATATAC
1 AATTTTTTATTTAATATTTAATATAC
13041834 AATTTTTTATTTAATATTTAATATAC
1 AATTTTTTATTTAATATTTAATATAC
13041860 A
1 A
13041861 TATAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
AATTTTTTATTTAATATTTAATATAC
Found at i:13057461 original size:2 final size:2
Alignment explanation
Indices: 13057454--13057487 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
13057444 ATATCAAACA
*
13057454 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13057488 CATTTCCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:13057652 original size:13 final size:13
Alignment explanation
Indices: 13057634--13057659 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13057624 TTAAGTCAAA
13057634 ATATGGTTTTGGT
1 ATATGGTTTTGGT
13057647 ATATGGTTTTGGT
1 ATATGGTTTTGGT
13057660 CTCCCTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
ATATGGTTTTGGT
Found at i:13058439 original size:2 final size:2
Alignment explanation
Indices: 13058432--13058462 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13058422 GAGAAAACTT
13058432 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13058463 TGCTTTGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13061386 original size:17 final size:17
Alignment explanation
Indices: 13061364--13061396 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13061354 CTCCGATTAC
13061364 AAAAAACAAAATTTAAA
1 AAAAAACAAAATTTAAA
*
13061381 AAAAAACAATATTTAA
1 AAAAAACAAAATTTAA
13061397 TAGTATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAACAAAATTTAAA
Found at i:13066979 original size:18 final size:18
Alignment explanation
Indices: 13066948--13066982 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13066938 AGCAAATTTT
13066948 GAAAAAAAAAAAAGAAAA
1 GAAAAAAAAAAAAGAAAA
* *
13066966 GAAAAGAAAGAAAGAAA
1 GAAAAAAAAAAAAGAAA
13066983 GACTTAGACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAAAAAGAAAA
Found at i:13070515 original size:24 final size:24
Alignment explanation
Indices: 13070486--13070542 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
13070476 ATTAGGAGGA
* * *
13070486 GGAGGTGGTGGAGGGTTTGGTGGT
1 GGAGGTGGAGGAGGGCTAGGTGGT
13070510 GGAGGTGGAGGAGGGCTAGGTGGT
1 GGAGGTGGAGGAGGGCTAGGTGGT
*
13070534 GGAGCTGGA
1 GGAGGTGGA
13070543 TTTGGTGGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.14, C:0.04, G:0.61, T:0.21
Consensus pattern (24 bp):
GGAGGTGGAGGAGGGCTAGGTGGT
Found at i:13070578 original size:18 final size:18
Alignment explanation
Indices: 13070557--13070595 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
13070547 GTGGGGGCGC
* *
13070557 TGGTGCTGGTGGTGGCCT
1 TGGTGCAGGTGGTGGACT
*
13070575 TGGTGGAGGTGGTGGACT
1 TGGTGCAGGTGGTGGACT
13070593 TGG
1 TGG
13070596 AGGAGGAGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.10, G:0.54, T:0.31
Consensus pattern (18 bp):
TGGTGCAGGTGGTGGACT
Found at i:13070600 original size:18 final size:18
Alignment explanation
Indices: 13070564--13070607 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
13070554 CGCTGGTGCT
* *
13070564 GGTGGTGGCCTTGGTGGA
1 GGTGGTGGACTTGGAGGA
13070582 GGTGGTGGACTTGGAGGA
1 GGTGGTGGACTTGGAGGA
*
13070600 GGAGGTGG
1 GGTGGTGG
13070608 TGGAGGGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.07, G:0.59, T:0.23
Consensus pattern (18 bp):
GGTGGTGGACTTGGAGGA
Found at i:13070639 original size:18 final size:20
Alignment explanation
Indices: 13070597--13070651 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 20
13070587 TGGACTTGGA
*
13070597 GGAGGAGGTGGTGGAGGGTTC
1 GGAGGAGGTGGTGG-TGGTTC
13070618 GGAGGAGGTGGTGGTGG-T-
1 GGAGGAGGTGGTGGTGGTTC
*
13070636 GGAGTAGGTGGTGGTG
1 GGAGGAGGTGGTGGTG
13070652 CTGGTGGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 15 0.47
19 1 0.03
20 2 0.06
21 14 0.44
ACGTcount: A:0.13, C:0.02, G:0.64, T:0.22
Consensus pattern (20 bp):
GGAGGAGGTGGTGGTGGTTC
Found at i:13070673 original size:24 final size:24
Alignment explanation
Indices: 13070576--13070670 Score: 84
Period size: 24 Copynumber: 4.0 Consensus size: 24
13070566 TGGTGGCCTT
* **
13070576 GGTGGAGGTGGTGGACTTGGAGGA
1 GGTGGTGGTGGTGGGTTTGGAGGA
* * *
13070600 GGAGGTGGTGGAGGGTTCGGAGGA
1 GGTGGTGGTGGTGGGTTTGGAGGA
* * *
13070624 GGTGGTGGTGGTGGAG-TAGGTGGT
1 GGTGGTGGTGGTGG-GTTTGGAGGA
*
13070648 GGTGCTGGTGGTGGGTTTGGAGG
1 GGTGGTGGTGGTGGGTTTGGAGG
13070671 TGGGGCAGGA
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
23 1 0.02
24 53 0.96
25 1 0.02
ACGTcount: A:0.12, C:0.03, G:0.61, T:0.24
Consensus pattern (24 bp):
GGTGGTGGTGGTGGGTTTGGAGGA
Found at i:13070716 original size:18 final size:18
Alignment explanation
Indices: 13070678--13070735 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
13070668 AGGTGGGGCA
* *
13070678 GGAGCAGGAGCTGGAGGT
1 GGAGCTGGAGGTGGAGGT
* *
13070696 GGA-CTAGGTGGTGGTGGT
1 GGAGCT-GGAGGTGGAGGT
13070714 GGAGCTGGAGGTGGAGGT
1 GGAGCTGGAGGTGGAGGT
13070732 GGAG
1 GGAG
13070736 GCGGCTTCGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.91
19 2 0.06
ACGTcount: A:0.17, C:0.07, G:0.59, T:0.17
Consensus pattern (18 bp):
GGAGCTGGAGGTGGAGGT
Found at i:13070726 original size:15 final size:15
Alignment explanation
Indices: 13070683--13070730 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
13070673 GGGCAGGAGC
13070683 AGGAGCTGGAGGTGG
1 AGGAGCTGGAGGTGG
** * *
13070698 ACTAGGTGGTGGTGG
1 AGGAGCTGGAGGTGG
*
13070713 TGGAGCTGGAGGTGG
1 AGGAGCTGGAGGTGG
13070728 AGG
1 AGG
13070731 TGGAGGCGGC
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.06, G:0.58, T:0.19
Consensus pattern (15 bp):
AGGAGCTGGAGGTGG
Found at i:13070789 original size:30 final size:30
Alignment explanation
Indices: 13070744--13070823 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
13070734 AGGCGGCTTC
* *
13070744 GGTGGAGGAGGTGGGTTTGGCGGTGGAGCT
1 GGTGCAGGTGGTGGGTTTGGCGGTGGAGCT
* *
13070774 GGTGCAGGTGGTGGGTTCGGTGGTGGAGCT
1 GGTGCAGGTGGTGGGTTTGGCGGTGGAGCT
* *
13070804 GGTGCAGGTAGTGGGCTTGG
1 GGTGCAGGTGGTGGGTTTGG
13070824 AGGAGGACTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.09, C:0.09, G:0.57, T:0.25
Consensus pattern (30 bp):
GGTGCAGGTGGTGGGTTTGGCGGTGGAGCT
Found at i:13074413 original size:5 final size:5
Alignment explanation
Indices: 13074403--13074428 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13074393 GTTTTTAATC
13074403 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
13074429 TTACATTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:13077035 original size:19 final size:19
Alignment explanation
Indices: 13077011--13077048 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
13077001 AAGTTAATAA
13077011 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGGTGGG
13077030 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGGTGGG
13077049 TGACAGTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32
Consensus pattern (19 bp):
CAAATTTGATTACGGTGGG
Found at i:13077146 original size:31 final size:31
Alignment explanation
Indices: 13077108--13077181 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
13077098 AAATATATTA
13077108 GATTTGATTCGAACTGAATCCTATCTCACTT
1 GATTTGATTCGAACTGAATCCTATCTCACTT
*
13077139 GATTTGATTCGAACTGAATTCTATCTCACTT
1 GATTTGATTCGAACTGAATCCTATCTCACTT
* *
13077170 GACTCGATTCGA
1 GATTTGATTCGA
13077182 TAAAATTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (31 bp):
GATTTGATTCGAACTGAATCCTATCTCACTT
Found at i:13093978 original size:5 final size:5
Alignment explanation
Indices: 13093968--13094000 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
13093958 CGATTTATAA
13093968 AAAAT AAAAT AAAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAA
13094001 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 17 0.65
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:13093983 original size:11 final size:11
Alignment explanation
Indices: 13093967--13094000 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
13093957 CCGATTTATA
13093967 AAAAATAAAAT
1 AAAAATAAAAT
13093978 AAAAATAAAAT
1 AAAAATAAAAT
13093989 -AAAAT-AAAT
1 AAAAATAAAAT
13093998 AAA
1 AAA
13094001 GAACACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.18
10 7 0.32
11 11 0.50
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:13094649 original size:13 final size:13
Alignment explanation
Indices: 13094631--13094658 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13094621 CCAAAACAGG
13094631 TTTTTAGCGGCGT
1 TTTTTAGCGGCGT
13094644 TTTTTAGCGGCGT
1 TTTTTAGCGGCGT
13094657 TT
1 TT
13094659 GAATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.29, T:0.50
Consensus pattern (13 bp):
TTTTTAGCGGCGT
Found at i:13094713 original size:39 final size:40
Alignment explanation
Indices: 13094664--13094752 Score: 135
Period size: 39 Copynumber: 2.2 Consensus size: 40
13094654 CGTTTGAATG
13094664 AAAAACGCCGCTAAAGAACAAGCATTAGCGGCGCTTTT-A
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGGCGCTTTTCA
* ***
13094703 AAAAATGCCGCTAAAGATTGAGCATTAGCGGCGCTTTTCA
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGGCGCTTTTCA
13094743 AAAAACGCCG
1 AAAAACGCCG
13094753 TTAATGCTCG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 34 0.77
40 10 0.23
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.19
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAACAAGCATTAGCGGCGCTTTTCA
Found at i:13094771 original size:40 final size:40
Alignment explanation
Indices: 13094664--13094786 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 40
13094654 CGTTTGAATG
* *
13094664 AAAAACGCCGCTAAAGAACAAGCATTAGCGGCGCTTTT-A
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTCA
* *
13094703 AAAAATGCCGCTAAAGATTGAGCATTAGCGGCGCTTTTCA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTCA
* * * * * * *
13094743 AAAAACGCCGTTAATGCTCGATCTTTAGCGCCGCTTTACA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTCA
13094783 AAAA
1 AAAA
13094787 CACCGCAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 34 0.49
40 36 0.51
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTCA
Found at i:13095196 original size:15 final size:14
Alignment explanation
Indices: 13095178--13095212 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
13095168 ATTATTTTAA
*
13095178 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
13095192 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
13095207 GGTTTA
1 GGTTTA
13095213 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:13095198 original size:22 final size:22
Alignment explanation
Indices: 13095139--13095217 Score: 54
Period size: 22 Copynumber: 3.6 Consensus size: 22
13095129 ATTTACAGTA
*
13095139 TATGG-TTAAGGGTTTAATGTT
1 TATGGATTAAGGGTTTAAGGTT
****
13095160 TAT-GAGTTATTATTTTAAGGTT
1 TATGGA-TTAAGGGTTTAAGGTT
* * *
13095182 TATGGATTATGGGTTTAGGGAT
1 TATGGATTAAGGGTTTAAGGTT
*
13095204 TATGGTTTAAGGGT
1 TATGGATTAAGGGT
13095218 GGTTTAAGGG
Statistics
Matches: 43, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 37 0.86
23 2 0.05
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (22 bp):
TATGGATTAAGGGTTTAAGGTT
Found at i:13095234 original size:25 final size:25
Alignment explanation
Indices: 13095193--13095240 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
13095183 ATGGATTATG
13095193 GGTTTAGGGATTATGGTTTAAGGGT
1 GGTTTAGGGATTATGGTTTAAGGGT
*
13095218 GGTTTAAGGG-TTGTGGTTTAAGG
1 GGTTT-AGGGATTATGGTTTAAGG
13095241 TTTAAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (25 bp):
GGTTTAGGGATTATGGTTTAAGGGT
Found at i:13095307 original size:7 final size:7
Alignment explanation
Indices: 13095297--13095331 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
13095287 AAGATTTATA
13095297 GTTTAGG
1 GTTTAGG
13095304 GTTTAGG
1 GTTTAGG
*
13095311 GATTAGG
1 GTTTAGG
13095318 AGTTTAGG
1 -GTTTAGG
13095326 GTTTAG
1 GTTTAG
13095332 ATTAATTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:13095511 original size:15 final size:15
Alignment explanation
Indices: 13095493--13095540 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
13095483 ATTATTTTAA
13095493 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
13095508 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
13095522 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
13095537 GGTT
1 GGTT
13095541 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:13095513 original size:22 final size:21
Alignment explanation
Indices: 13095488--13095537 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
13095478 GAGTTATTAT
*
13095488 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
13095510 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
13095531 TTTAAGG
1 TTTAAGG
13095538 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:13095531 original size:7 final size:7
Alignment explanation
Indices: 13095425--13095534 Score: 53
Period size: 7 Copynumber: 15.4 Consensus size: 7
13095415 TTAATTATCA
*
13095425 TTATAGT
1 TTATGGT
*
13095432 TTAGGGT
1 TTATGGT
*
13095439 TTATGAT
1 TTATGGT
*
13095446 TTAGGGT
1 TTATGGT
*
13095453 ATATGGT
1 TTATGGT
*
13095460 TTATAGT
1 TTATGGT
**
13095467 TTAAAGT
1 TTATGGT
*
13095474 GTATGAGTT
1 TTATG-G-T
13095483 ATTAT--T
1 -TTATGGT
*
13095489 TTAAGGT
1 TTATGGT
*
13095496 TTATGGA
1 TTATGGT
13095503 TTATGGGT
1 TTAT-GGT
* *
13095511 TTAGGGA
1 TTATGGT
13095518 TTATGGT
1 TTATGGT
13095525 TTATGGT
1 TTATGGT
13095532 TTA
1 TTA
13095535 AGGGTTGGGG
Statistics
Matches: 74, Mismatches: 23, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
5 3 0.04
6 1 0.01
7 60 0.81
8 6 0.08
9 1 0.01
10 3 0.04
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (7 bp):
TTATGGT
Found at i:13095546 original size:14 final size:15
Alignment explanation
Indices: 13095529--13095569 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
13095519 TATGGTTTAT
13095529 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
13095543 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
13095558 GG-TTAAGGGTTA
1 GGTTTAAGGGTTA
13095570 AGTGTTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.44, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:13095560 original size:21 final size:21
Alignment explanation
Indices: 13095522--13095561 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13095512 TAGGGATTAT
* *
13095522 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGCTTAAGGGTTGG
*
13095543 GGTTTAAGGCTTAGGGGTT
1 GGTTTAAGGCTTAAGGGTT
13095562 AAGGGTTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.42, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGCTTAAGGGTTGG
Found at i:13102648 original size:10 final size:10
Alignment explanation
Indices: 13102633--13102657 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13102623 TTTTATGACC
13102633 TTTATAATAT
1 TTTATAATAT
13102643 TTTATAATAT
1 TTTATAATAT
13102653 TTTAT
1 TTTAT
13102658 TTTTTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTATAATAT
Found at i:13102710 original size:41 final size:41
Alignment explanation
Indices: 13102665--13102745 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
13102655 TATTTTTTTT
* * *
13102665 TAAATTTTATGACCTTTAGCGGCGTTTTTGGGAAAAGCGCC
1 TAAATGTTATAACCTTTAGCGGCGTTTGTGGGAAAAGCGCC
13102706 TAAATGTTATAACCTTTAGCGGCGTTTGTGGGAAAAGCGC
1 TAAATGTTATAACCTTTAGCGGCGTTTGTGGGAAAAGCGC
13102746 TGCTAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (41 bp):
TAAATGTTATAACCTTTAGCGGCGTTTGTGGGAAAAGCGCC
Found at i:13103716 original size:3 final size:3
Alignment explanation
Indices: 13103708--13103754 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
13103698 ACCCTCTCTT
13103708 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13103755 TCTCCATCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13104100 original size:20 final size:20
Alignment explanation
Indices: 13104072--13104109 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
13104062 TTATTTCATA
*
13104072 TTAATTATAAAAATAAATTT
1 TTAACTATAAAAATAAATTT
13104092 TTAACTATAAAAATAAAT
1 TTAACTATAAAAATAAAT
13104110 AAAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAACTATAAAAATAAATTT
Found at i:13104296 original size:6 final size:6
Alignment explanation
Indices: 13104285--13104313 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13104275 AAGAATTATC
13104285 AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
13104314 TGAAAATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:13104530 original size:21 final size:22
Alignment explanation
Indices: 13104504--13104547 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
13104494 AAAAACGATT
13104504 CCTTGGG-GTGCACTTTACTGA
1 CCTTGGGAGTGCACTTTACTGA
13104525 CCTTGGGAGTGCACTTTACTGA
1 CCTTGGGAGTGCACTTTACTGA
13104547 C
1 C
13104548 GTGAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (22 bp):
CCTTGGGAGTGCACTTTACTGA
Found at i:13104662 original size:29 final size:30
Alignment explanation
Indices: 13104609--13104665 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
13104599 AAAAAAAATT
*
13104609 ATTTTTTAAAAATATTATAAAAATAAACTA
1 ATTTTTTAAAAATATTACAAAAATAAACTA
* *
13104639 ATTTTTTTAAAAT-TTACAAGAATAAAC
1 ATTTTTTAAAAATATTACAAAAATAAAC
13104666 CTTAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (30 bp):
ATTTTTTAAAAATATTACAAAAATAAACTA
Found at i:13105194 original size:6 final size:6
Alignment explanation
Indices: 13105178--13105207 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
13105168 TAAGTTATAC
13105178 TTTTAA TTTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA -TTTTAA TTTTAA TTTTAA TTTTA
13105208 TATTATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:13105325 original size:18 final size:19
Alignment explanation
Indices: 13105294--13105332 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
13105284 TGATATATCT
13105294 TTTTTAAATATTTACT-TA
1 TTTTTAAATATTTACTATA
13105312 TTTTT-AATATTTTACTATA
1 TTTTTAAATA-TTTACTATA
13105331 TT
1 TT
13105333 CATTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTAAATATTTACTATA
Found at i:13105637 original size:15 final size:15
Alignment explanation
Indices: 13105607--13105635 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13105597 ACTATTAGTA
13105607 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
13105622 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
13105636 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:13106489 original size:21 final size:21
Alignment explanation
Indices: 13106456--13106496 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13106446 TACTTGTTAA
*
13106456 TTTCTACACATGAAAATACAC
1 TTTCAACACATGAAAATACAC
* *
13106477 TTTCAACATATGAAATTACA
1 TTTCAACACATGAAAATACA
13106497 AAGCTACGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.32
Consensus pattern (21 bp):
TTTCAACACATGAAAATACAC
Found at i:13107292 original size:26 final size:26
Alignment explanation
Indices: 13107263--13107316 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13107253 GAGTCAGAGT
13107263 AGCATAGACTTGTAATACTTGGATTC
1 AGCATAGACTTGTAATACTTGGATTC
*
13107289 AGCATAGACTTGTATTACTTGGATTC
1 AGCATAGACTTGTAATACTTGGATTC
13107315 AG
1 AG
13107317 ATGTGTTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (26 bp):
AGCATAGACTTGTAATACTTGGATTC
Found at i:13115629 original size:116 final size:115
Alignment explanation
Indices: 13115426--13115650 Score: 335
Period size: 116 Copynumber: 1.9 Consensus size: 115
13115416 CACATTAATC
*
13115426 AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTATCAGGAGGCCCATTACTGAATATAT
1 AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTATCAAGAGGCCCATTACTGAATATAT
* *
13115491 CACAATCTGACTTGTAAATAACATTTACTAGTAAGATGATCTAATTGTTA
66 CACAATCTGACCTGTAAATAACATCTACTAGTAAGATGATCTAATTGTTA
* * *
13115541 AGTTTAGTTTTTAATATATTGTAGAGGTGAGGCCTCACGTATCAAGAGGCCCATTGCAT-AATAT
1 AGTTTAGCTTTTAAAATATTGTAGAGGTG-GGCCTCACGTATCAAGAGGCCCATTAC-TGAATAT
* * * *
13115605 ATTACAATTTGGCCTGTGAATAACATCTACTAGTAAGATGATCTAA
64 ATCACAATCTGACCTGTAAATAACATCTACTAGTAAGATGATCTAA
13115651 CAATTCTAAA
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
115 27 0.28
116 70 0.71
117 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (115 bp):
AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTATCAAGAGGCCCATTACTGAATATAT
CACAATCTGACCTGTAAATAACATCTACTAGTAAGATGATCTAATTGTTA
Found at i:13118350 original size:6 final size:6
Alignment explanation
Indices: 13118339--13118385 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
13118329 CTAATTTCCC
13118339 TTTTCT TTTTCT TTTTC- -TTTCT TTTTCT CTTTTCT TTCTCTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT TT-T-TCT TTTT
13118386 GTTTCAACCC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
4 4 0.11
6 19 0.53
7 8 0.22
8 5 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:13118364 original size:17 final size:17
Alignment explanation
Indices: 13118340--13118377 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
13118330 TAATTTCCCT
13118340 TTTCTTTTTCT-TTTTC
1 TTTCTTTTTCTCTTTTC
13118356 TTTCTTTTTCTCTTTTC
1 TTTCTTTTTCTCTTTTC
13118373 TTTCT
1 TTTCT
13118378 CTCTTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTTTTTCTCTTTTC
Found at i:13118374 original size:13 final size:13
Alignment explanation
Indices: 13118339--13118384 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
13118329 CTAATTTCCC
13118339 TTTTCT-TTTTC-
1 TTTTCTCTTTTCT
13118350 TTTT-TC-TTTCT
1 TTTTCTCTTTTCT
13118361 TTTTCTCTTTTCT
1 TTTTCTCTTTTCT
*
13118374 TTCTCTCTTTT
1 TTTTCTCTTTT
13118385 TGTTTCAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
10 5 0.17
11 8 0.27
12 2 0.07
13 15 0.50
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTCTTTTCT
Found at i:13118375 original size:29 final size:31
Alignment explanation
Indices: 13118333--13118390 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
13118323 AGAACCCTAA
13118333 TTTCCCTTTTCTTT-T-TCTTTTTCTTTCTT
1 TTTCCCTTTTCTTTCTCTCTTTTTCTTTCTT
* *
13118362 TTTCTCTTTTCTTTCTCTCTTTTTGTTTC
1 TTTCCCTTTTCTTTCTCTCTTTTTCTTTC
13118391 AACCCTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
30 1 0.04
31 11 0.44
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (31 bp):
TTTCCCTTTTCTTTCTCTCTTTTTCTTTCTT
Found at i:13118376 original size:21 final size:21
Alignment explanation
Indices: 13118339--13118385 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
13118329 CTAATTTCCC
*
13118339 TTTTCTTTTTCTTTTTCTTTCT
1 TTTTCTTTTTC-TTTTCTCTCT
13118361 TTTTCTCTTTTC-TTTCTCTCT
1 TTTTCT-TTTTCTTTTCTCTCT
13118382 TTTT
1 TTTT
13118386 GTTTCAACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 6 0.26
23 5 0.22
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTTCTTTTCTCTCT
Found at i:13119474 original size:20 final size:19
Alignment explanation
Indices: 13119436--13119483 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
13119426 TAAATTCTAA
*
13119436 AAAGATAAATACAATTAATT
1 AAAGATAAATACAAATAA-T
13119456 AAAGATAAATA-AAGATAAT
1 AAAGATAAATACAA-ATAAT
*
13119475 AAAAATAAA
1 AAAGATAAA
13119484 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
AAAGATAAATACAAATAAT
Found at i:13119508 original size:27 final size:26
Alignment explanation
Indices: 13119478--13119539 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
13119468 AGATAATAAA
13119478 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
13119505 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
13119532 AATAAAAT
1 AATAAAAT
13119540 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:13124250 original size:19 final size:19
Alignment explanation
Indices: 13124202--13124256 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
13124192 ATAATCTTCA
13124202 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
13124221 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
13124239 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
13124257 AGGTATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:13133192 original size:298 final size:298
Alignment explanation
Indices: 13132762--13133486 Score: 1216
Period size: 298 Copynumber: 2.4 Consensus size: 298
13132752 AAATCGAGGA
* *
13132762 ATCTCTATATTCGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
*
13132827 AAGATGATTTAGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCG
66 AAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCG
*
13132892 GATGTTTTTACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGCAGATCA
131 GATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGCAGATCA
* *
13132957 AAGATATAGTAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTC
196 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTC
*
13133022 TGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 TGTACTGTCAAAGAACAAATCGAAGAAACAGATTTGGC
*
13133060 ATCTCCATATTCGACGGAGAGGAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
* * ** *
13133125 AAGATGATATGGCATCTCTATATTAGACGATGAGCAGATCGAAGACATAGCAGATCTAACTTTCG
66 AAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCG
* * * * *
13133190 GATGTTTTCACATTGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAATGAGTAGATCG
131 GATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGCAGATCA
*
13133255 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTG
196 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTC
* *
13133320 TGTACTGTCAAATAACAAATCGAAGAAATAGATTTGGC
261 TGTACTGTCAAAGAACAAATCGAAGAAACAGATTTGGC
*
13133358 ATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
* * * *
13133423 AAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACACAGTAGATCTGACCTTC
66 AAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTC
13133487 AATGAAGCAG
Statistics
Matches: 395, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
298 395 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (298 bp):
ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCC
AAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCG
GATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGCAGATCA
AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTC
TGTACTGTCAAAGAACAAATCGAAGAAACAGATTTGGC
Found at i:13133277 original size:89 final size:88
Alignment explanation
Indices: 13133110--13133318 Score: 237
Period size: 89 Copynumber: 2.4 Consensus size: 88
13133100 ATCTGACCTT
* *
13133110 CATTGAAGCAGATCCAAGATGATATGGCATCTCTATATTAGACGATGAGCAGATCGAAGACATAG
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACAATGAGCAGATCGAAGACATAG
*
13133175 CAGATCTAACTTTC-GGATGTTTTCA
66 CAGATCTAACTTTCACG-TG-TTT-A
* * *
13133200 CATTGAAGTAGATCCAAGATGATTTGGCATC-CT-TGCGTT-GACAATGAGTAGATCGAAGACAT
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTAT--ATTAGACAATGAGCAGATCGAAGACAT
* **
13133262 AGCAGATTTGGCTTTCACGTGTTTA
64 AGCAGATCTAACTTTCACGTGTTTA
** *
13133287 CGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 CATTGAAGCAGATCCAAGATGATTTGGCATCT
13133319 GTGTACTGTC
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
87 28 0.27
88 4 0.04
89 38 0.37
90 32 0.31
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (88 bp):
CATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACAATGAGCAGATCGAAGACATAG
CAGATCTAACTTTCACGTGTTTA
Found at i:13133452 original size:78 final size:78
Alignment explanation
Indices: 13133350--13133644 Score: 448
Period size: 78 Copynumber: 3.8 Consensus size: 78
13133340 CGAAGAAATA
* ** * *
13133350 GATTTGGCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
13133415 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
13133428 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACACAGTAGATCTGACCTTCAATGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
13133493 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
13133506 GATTTGGCATCTCTGAATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
13133570 AGCAAATCCAAGAT
65 AGCAGATCCAAGAT
* *
13133584 GATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
13133645 GTGTTTACAT
Statistics
Matches: 195, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 193 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:13133779 original size:89 final size:89
Alignment explanation
Indices: 13133674--13133842 Score: 223
Period size: 89 Copynumber: 1.9 Consensus size: 89
13133664 TCCAAGATGA
* * *
13133674 CAGATTTGCCATCTCTGTATTAAACGGGGATCAAATCAG-AGATAACAGATTTGGCATCTATGTA
1 CAGATTTGCCATCTCTGTATTAAACGAGGAGCAAAT-AGAAGATAACAAATTTGGCATCTATGTA
13133738 TCAGACGGGGAGCAGATTGAAGAAG
65 TCAGACGGGGAGCAGATTGAAGAAG
* * * * * *
13133763 CAGATTTGGCATCTCTGTATTAGACGAGGAGCAGATTGAAGATAACAAATTTGGCGTCTCTGTAT
1 CAGATTTGCCATCTCTGTATTAAACGAGGAGCAAATAGAAGATAACAAATTTGGCATCTATGTAT
* *
13133828 TAGATGGGGAGCAGA
66 CAGACGGGGAGCAGA
13133843 CCAAAGATAG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 67 0.99
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (89 bp):
CAGATTTGCCATCTCTGTATTAAACGAGGAGCAAATAGAAGATAACAAATTTGGCATCTATGTAT
CAGACGGGGAGCAGATTGAAGAAG
Found at i:13133850 original size:45 final size:45
Alignment explanation
Indices: 13133658--13133857 Score: 213
Period size: 45 Copynumber: 4.5 Consensus size: 45
13133648 TTTACATCGA
* * * *
13133658 AGCAGATCCAAGATGACAGATTTGCCATCTCTGTATTAAACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * * *
13133703 ATCAAATCAGAGATAACAGATTTGGCATCTATGTATCAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
** * *
13133748 AGCAGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACGAGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
** * * *
13133792 AGCAGATTGAAGATAACAAATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
13133837 AGCAGACCAAAGATAGCAGAT
1 AGCAGATCAAAGATAACAGAT
13133858 ATTGCCTTCC
Statistics
Matches: 126, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
44 40 0.32
45 86 0.68
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (45 bp):
AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:13134302 original size:17 final size:19
Alignment explanation
Indices: 13134205--13134295 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
13134195 ATAATCTTCA
13134205 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
13134224 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
13134243 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
13134260 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
13134278 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
13134296 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:13134321 original size:22 final size:22
Alignment explanation
Indices: 13134205--13134318 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
13134195 ATAATCTTCA
13134205 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
13134224 ATGATATGCAAT-TT--TAGAT
1 ATGATATGCAATCTTAGAAGAT
13134243 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
13134260 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
13134278 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
13134300 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
13134319 GATTTAGTTT
Statistics
Matches: 84, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
17 13 0.15
18 20 0.24
19 31 0.37
22 8 0.10
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:13135286 original size:19 final size:19
Alignment explanation
Indices: 13135262--13135304 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
13135252 GGTTTCAACA
*
13135262 TGCATCATTTTACGAAATG
1 TGCATCATTTTACGAAAAG
13135281 TGCATCATTTTACGAAAAG
1 TGCATCATTTTACGAAAAG
13135300 TGCAT
1 TGCAT
13135305 TAACATGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
TGCATCATTTTACGAAAAG
Found at i:13139256 original size:15 final size:16
Alignment explanation
Indices: 13139223--13139257 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
13139213 TGAAGGAAAC
13139223 AAAATTGAAAAGATGG
1 AAAATTGAAAAGATGG
*
13139239 AAAATTGAAAGGAT-G
1 AAAATTGAAAAGATGG
13139254 AAAA
1 AAAA
13139258 CTAGAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (16 bp):
AAAATTGAAAAGATGG
Found at i:13140544 original size:9 final size:9
Alignment explanation
Indices: 13140526--13140562 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13140516 GTTTGGGGTA
*
13140526 TATTCAAAT
1 TATTCGAAT
13140535 TATTCGAAT
1 TATTCGAAT
*
13140544 TATTCGAGT
1 TATTCGAAT
13140553 TATTCGAAT
1 TATTCGAAT
13140562 T
1 T
13140563 CGAAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:13143916 original size:26 final size:26
Alignment explanation
Indices: 13143851--13143916 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
13143841 TAATATTTAA
13143851 TTTAAACTATTTTATATGTTATTCAT
1 TTTAAACTATTTTATATGTTATTCAT
* *
13143877 TTTAAA-TTTGTTTATATAG-TATTCTT
1 TTTAAACTAT-TTTATAT-GTTATTCAT
*
13143903 TTTAAACTGTTTTA
1 TTTAAACTATTTTA
13143917 ATACATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 29 0.85
27 3 0.09
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (26 bp):
TTTAAACTATTTTATATGTTATTCAT
Found at i:13144097 original size:25 final size:25
Alignment explanation
Indices: 13144056--13144125 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
13144046 AAATTTCTAT
*
13144056 TTTATACGGATTATTTATTTTCAAA-TT
1 TTTATAC--ATTATTTATTTT-AAACTC
* * *
13144083 TTTATATATTGTTTATCTTAAACTC
1 TTTATACATTATTTATTTTAAACTC
13144108 TTTATACATTATTTATTT
1 TTTATACATTATTTATTT
13144126 ATTTTATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
24 3 0.09
25 26 0.74
27 6 0.17
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTATACATTATTTATTTTAAACTC
Found at i:13144161 original size:34 final size:35
Alignment explanation
Indices: 13144123--13144195 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 35
13144113 ACATTATTTA
*
13144123 TTTATTTTATATATATTATTTATATTAAACTT-TT
1 TTTATTTTATATATACTATTTATATTAAACTTCTT
* * *
13144157 TTTATTTTATGTATACTATTTATTTTAAATTTCTT
1 TTTATTTTATATATACTATTTATATTAAACTTCTT
13144192 TTTA
1 TTTA
13144196 CATATTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 28 0.82
35 6 0.18
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (35 bp):
TTTATTTTATATATACTATTTATATTAAACTTCTT
Found at i:13144242 original size:20 final size:21
Alignment explanation
Indices: 13144201--13144249 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
13144191 TTTTACATAT
* *
13144201 TATTATTTTAGACTTTTTATA
1 TATTATTTTAGAATTGTTATA
*
13144222 TGTTATTTTA-AATTGTTATA
1 TATTATTTTAGAATTGTTATA
13144242 TATTATTT
1 TATTATTT
13144250 ATTTTAAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (21 bp):
TATTATTTTAGAATTGTTATA
Found at i:13144251 original size:24 final size:24
Alignment explanation
Indices: 13144224--13144308 Score: 88
Period size: 24 Copynumber: 3.6 Consensus size: 24
13144214 TTTTTATATG
13144224 TTATTTTAAATTGTTATATATTAT
1 TTATTTTAAATTGTTATATATTAT
* *
13144248 TTATTTTAAGTTG--ATTTA-T-T
1 TTATTTTAAATTGTTATATATTAT
* *
13144268 TTATTTTAAATTGTTTTGTATATTAA
1 TTATTTTAAATTG--TTATATATTAT
13144294 TTATTTTAAATTGTT
1 TTATTTTAAATTGTT
13144309 TTACACTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
20 13 0.27
21 1 0.02
22 4 0.08
24 17 0.35
25 1 0.02
26 13 0.27
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (24 bp):
TTATTTTAAATTGTTATATATTAT
Found at i:13144298 original size:46 final size:44
Alignment explanation
Indices: 13144224--13144311 Score: 122
Period size: 46 Copynumber: 2.0 Consensus size: 44
13144214 TTTTTATATG
* *
13144224 TTATTTTAAATTGTTATATATTATTTATTTTAAGTTGATTTATT
1 TTATTTTAAATTGTTATATATTAATTATTTTAAATTGATTTATT
* *
13144268 TTATTTTAAATTGTTTTGTATATTAATTATTTTAAATTGTTTTA
1 TTATTTTAAATTG--TTATATATTAATTATTTTAAATTGATTTA
13144312 CACTATTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 13 0.34
46 25 0.66
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (44 bp):
TTATTTTAAATTGTTATATATTAATTATTTTAAATTGATTTATT
Found at i:13146813 original size:23 final size:23
Alignment explanation
Indices: 13146767--13146813 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
13146757 ATAATTACTT
*
13146767 TCTCTGTCTCTTGACACGCTTTC
1 TCTCTGTCTCTTGACACGCATTC
* *
13146790 TCTCTGTCTTTTGACACTCATTC
1 TCTCTGTCTCTTGACACGCATTC
13146813 T
1 T
13146814 GTTTTTCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.32, G:0.11, T:0.47
Consensus pattern (23 bp):
TCTCTGTCTCTTGACACGCATTC
Found at i:13156668 original size:22 final size:22
Alignment explanation
Indices: 13156638--13156682 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
13156628 TTTAGTTTAA
*
13156638 TTAATATAAAA-TTTCATCCTTT
1 TTAAAATAAAATTTTCAT-CTTT
13156660 TTAAAATAAAATTTTCATCTTT
1 TTAAAATAAAATTTTCATCTTT
13156682 T
1 T
13156683 GACCTATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAAATAAAATTTTCATCTTT
Found at i:13165823 original size:2 final size:2
Alignment explanation
Indices: 13165816--13165841 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13165806 AGATGAGGCT
13165816 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
13165842 AAGCAGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13167306 original size:90 final size:89
Alignment explanation
Indices: 13167153--13167334 Score: 310
Period size: 90 Copynumber: 2.0 Consensus size: 89
13167143 ATCTGAACTT
* *
13167153 CGAATGTTAGACGGTCAACTCCAAGCTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
1 CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCC-TT
*
13167218 TTTTTCGGGCAATTTCAGTTTTCTA
65 TTTTTCAGGCAATTTCAGTTTTCTA
* *
13167243 CGAATGTTACACGGTCAACTCCAAACTATTATCGATCAAACTAGATATTCACTCAATAACCCTTT
1 CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
13167308 TTTTCAGGCAATTTCAGTTTTCTA
66 TTTTCAGGCAATTTCAGTTTTCTA
13167332 CGA
1 CGA
13167335 TTCTAAAACC
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 29 0.33
90 58 0.67
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.34
Consensus pattern (89 bp):
CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
TTTTCAGGCAATTTCAGTTTTCTA
Found at i:13172894 original size:45 final size:45
Alignment explanation
Indices: 13172845--13173060 Score: 220
Period size: 45 Copynumber: 4.8 Consensus size: 45
13172835 TTGGATTGAA
* * *
13172845 AAATGAAAAAGACCATGGTTGAAAGATACCATGGCATTATACCCG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * *
13172890 AAATGAGAAATACCATAGTTGAAAGATACTATGACATTA-AACTG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * * *
13172934 GAATGAATAAGACCATATTTGAAAGATACTATGAAATTATACCGG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * * * *
13172979 AAATGTATAAGACCATAGTTGAAAAATACTATGGCATTAAATCCG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * *
13173024 ATA-CAAATAAGACCATAGTTGAAAGATACTATAACAT
1 AAATGAAA-AAGACCATAGTTGAAAGATACTATGACAT
13173061 CACTTTAGAA
Statistics
Matches: 138, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
44 37 0.27
45 101 0.73
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (45 bp):
AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
Found at i:13172997 original size:89 final size:89
Alignment explanation
Indices: 13172846--13173055 Score: 253
Period size: 89 Copynumber: 2.3 Consensus size: 89
13172836 TGGATTGAAA
* * * ** *
13172846 AATGAAAAAGACCATGGTTGAAAGATACCATGGCATTATACCCGAAATGAGAAATACCATAGTTG
1 AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATGAGAAAGACCATAGTTG
* *
13172911 AAAGATACTATGACATTAAA-CTGG
66 AAAAATACTATGACATTAAATC-CG
* * *
13172935 AATGAATAAGACCATATTTGAAAGATACTATGAAATTATACCGGAAATGTA-TAAGACCATAGTT
1 AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATG-AGAAAGACCATAGTT
*
13172999 GAAAAATACTATGGCATTAAATCCG
65 GAAAAATACTATGACATTAAATCCG
**
13173024 ATACAAATAAGACCATAGTTGAAAGATACTAT
1 A-ATGAATAAGACCATAGTTGAAAGATACTAT
13173056 AACATCACTT
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
89 74 0.72
90 29 0.28
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (89 bp):
AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATGAGAAAGACCATAGTTG
AAAAATACTATGACATTAAATCCG
Found at i:13178101 original size:38 final size:35
Alignment explanation
Indices: 13178031--13178105 Score: 96
Period size: 38 Copynumber: 2.1 Consensus size: 35
13178021 AGTCCAAACC
* * *
13178031 AAGCCCAAAGTATATCACCTAACCTAAAACCCTAA
1 AAGCCCAAACTATATCACCCAACCCAAAACCCTAA
13178066 AAGCCCAATACTATATCAACCCAAGCCCAAAACCCTAA
1 AAGCCCAA-ACTATATC-ACCCAA-CCCAAAACCCTAA
13178104 AA
1 AA
13178106 AACTAATAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 8 0.24
36 7 0.21
37 5 0.15
38 14 0.41
ACGTcount: A:0.47, C:0.33, G:0.05, T:0.15
Consensus pattern (35 bp):
AAGCCCAAACTATATCACCCAACCCAAAACCCTAA
Found at i:13189143 original size:44 final size:44
Alignment explanation
Indices: 13189073--13189283 Score: 149
Period size: 44 Copynumber: 4.7 Consensus size: 44
13189063 CTACCATAGT
* * * * *
13189073 GAATCTTATCTCTCTGAAGTTACAGTGGAGCAAGATGAAGCTAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGCAATATGAAGCTAC
* *
13189117 GAATCTTATATCCCTGAAATTGCAGTGGATCGAAT-TGAAGCCAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGC-AATATGAAGCTAC
* * * * ** **
13189161 -AATTTCTATACCCCT-AAAGTTGCAGTGGGTTGGAATAAAAATATAATGGC
1 GAATCT-TATATCCCTGAAA-TTGCAGT-GG-AGCAATATGAAGCT-A---C
* * *
13189211 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAATATGAAGCTAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGCAATATGAAGCTAC
*
13189255 GAATCTTATATCCTTGAAATTGCAGTGGA
1 GAATCTTATATCCCTGAAATTGCAGTGGA
13189284 TCGGATTAAA
Statistics
Matches: 123, Mismatches: 32, Indels: 24
0.69 0.18 0.13
Matches are distributed among these distances:
43 7 0.06
44 75 0.61
45 7 0.06
46 2 0.02
47 2 0.02
48 8 0.07
49 2 0.02
50 15 0.12
51 5 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
GAATCTTATATCCCTGAAATTGCAGTGGAGCAATATGAAGCTAC
Found at i:13189276 original size:138 final size:138
Alignment explanation
Indices: 13189073--13189407 Score: 571
Period size: 138 Copynumber: 2.4 Consensus size: 138
13189063 CTACCATAGT
* * *
13189073 GAATCTTATCTCTCTGAAGTTACAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCTGAAATT
1 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCTGAAATT
*
13189138 GCAGTGGATCGAATTGAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
66 GCAGTGGATCGAATTAAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
13189203 ATAATGGC
131 ATAATGGC
* *
13189211 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAATATGAAGCTACGAATCTTATATCCTTGAAATT
1 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCTGAAATT
*
13189276 GCAGTGGATCGGATTAAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
66 GCAGTGGATCGAATTAAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
13189341 ATAATGGC
131 ATAATGGC
** * *
13189349 GAATCTTATCTCCCTGGAGTTGCAGTAAAGCAAGATGAAGCTACGAATCCTAAATCCCT
1 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCT
13189408 AATATGGTAA
Statistics
Matches: 184, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 184 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (138 bp):
GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCTGAAATT
GCAGTGGATCGAATTAAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
ATAATGGC
Done.